Metagenome / Metatranscriptome Family F058471

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058471
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	68 residues
Representative Sequence	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFSD
Number of Associated Samples	121
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.04 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	78.52 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.704 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.593 % of family members)
Environment Ontology (ENVO)	Unclassified (34.074 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.370 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.46% β-sheet: 27.84% Coil/Unstructured: 56.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF01266	DAO	9.63
PF14417	MEDS	8.89
PF00890	FAD_binding_2	8.89
PF02604	PhdYeFM_antitox	4.44
PF03401	TctC	3.70
PF00891	Methyltransf_2	3.70
PF02771	Acyl-CoA_dh_N	3.70
PF07705	CARDB	3.70
PF08327	AHSA1	3.70
PF00697	PRAI	2.96
PF13594	Obsolete Pfam Family	1.48
PF01850	PIN	1.48
PF04909	Amidohydro_2	1.48
PF04828	GFA	1.48
PF03972	MmgE_PrpD	1.48
PF16864	Dimerisation2	1.48
PF00496	SBP_bac_5	0.74
PF04392	ABC_sub_bind	0.74
PF01177	Asp_Glu_race	0.74
PF13276	HTH_21	0.74
PF01035	DNA_binding_1	0.74
PF07978	NIPSNAP	0.74
PF01435	Peptidase_M48	0.74
PF00211	Guanylate_cyc	0.74
PF04222	DUF416	0.74
PF00296	Bac_luciferase	0.74
PF00487	FA_desaturase	0.74
PF00702	Hydrolase	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	4.44
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	4.44
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	3.70
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.70
COG0135	Phosphoribosylanthranilate isomerase	Amino acid transport and metabolism [E]	2.96
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.48
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.48
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.74
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.74
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.74
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.74
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.74
COG3068	Uncharacterized conserved protein YjaG, DUF416 family	Function unknown [S]	0.74
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.74
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.74

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.19 %
Unclassified	root	N/A	34.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.19 %
Unclassified	root	N/A	34.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.70 %
Unclassified	root	N/A	34.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.19 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.96 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	14.07 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	14.07 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Ulvophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	7.41 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
TCBD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade	1.48 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Bryopsidales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales	1.48 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Deltaproteobacteria bacterium RBG_16_50_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Ostreobineae	suborder	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae	1.48 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Deltaproteobacteria bacterium RBG_16_50_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Ostreobiaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae → Ostreobiaceae	1.48 %
Geobacter benzoatilyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Deltaproteobacteria bacterium RBG_16_50_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Ostreobium	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae → Ostreobiaceae → Ostreobium	1.48 %
Geobacter benzoatilyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Deltaproteobacteria bacterium RBG_16_50_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.67 %
uncultured bacterium fosmid pJB190D12_contig II	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2.96 %
Ostreobium quekettii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae → Ostreobiaceae → Ostreobium → Ostreobium quekettii	1.48 %
Geobacter benzoatilyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	1.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Deltaproteobacteria bacterium RBG_16_50_11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001310666	Not Available	830	Open in IMG/M
2170459017\|G14TP7Y02G8Z0E	Not Available	618	Open in IMG/M
3300000787\|JGI11643J11755_11298883	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300001431\|F14TB_100785832	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300003319\|soilL2_10140187	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2549	Open in IMG/M
3300003324\|soilH2_10044880	All Organisms → cellular organisms → Bacteria → Proteobacteria	2725	Open in IMG/M
3300003324\|soilH2_10056077	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300003503\|JGI26141J51220_1008812	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300003997\|Ga0055466_10011526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1730	Open in IMG/M
3300004114\|Ga0062593_100514737	Not Available	1114	Open in IMG/M
3300004463\|Ga0063356_100286208	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300004479\|Ga0062595_100887401	Not Available	749	Open in IMG/M
3300005293\|Ga0065715_10024060	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2144	Open in IMG/M
3300005294\|Ga0065705_10186654	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300005332\|Ga0066388_101537455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1166	Open in IMG/M
3300005336\|Ga0070680_100253674	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300005337\|Ga0070682_100128842	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300005340\|Ga0070689_101327745	Not Available	648	Open in IMG/M
3300005366\|Ga0070659_101025353	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300005434\|Ga0070709_10179854	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300005458\|Ga0070681_10807363	Not Available	855	Open in IMG/M
3300005529\|Ga0070741_10000079	All Organisms → cellular organisms → Bacteria	350167	Open in IMG/M
3300005535\|Ga0070684_101031123	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300005536\|Ga0070697_101982166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	521	Open in IMG/M
3300005545\|Ga0070695_100818811	Not Available	747	Open in IMG/M
3300005546\|Ga0070696_101504331	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005554\|Ga0066661_10208005	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300005557\|Ga0066704_10695394	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae → Ostreobiaceae → Ostreobium → Ostreobium quekettii	641	Open in IMG/M
3300005577\|Ga0068857_100715193	Not Available	952	Open in IMG/M
3300005618\|Ga0068864_100227740	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1723	Open in IMG/M
3300005836\|Ga0074470_10774092	All Organisms → cellular organisms → Bacteria → Proteobacteria	6852	Open in IMG/M
3300005836\|Ga0074470_11163712	Not Available	902	Open in IMG/M
3300005836\|Ga0074470_11393303	All Organisms → cellular organisms → Bacteria → Proteobacteria	11420	Open in IMG/M
3300006163\|Ga0070715_10824400	Not Available	565	Open in IMG/M
3300006358\|Ga0068871_100941790	Not Available	802	Open in IMG/M
3300006755\|Ga0079222_10029742	All Organisms → cellular organisms → Bacteria	2314	Open in IMG/M
3300006804\|Ga0079221_10056972	Not Available	1774	Open in IMG/M
3300006806\|Ga0079220_10005190	All Organisms → cellular organisms → Bacteria	4667	Open in IMG/M
3300006845\|Ga0075421_100037555	All Organisms → cellular organisms → Bacteria	6139	Open in IMG/M
3300006852\|Ga0075433_10053373	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300006852\|Ga0075433_10999721	Not Available	729	Open in IMG/M
3300006854\|Ga0075425_100004414	All Organisms → cellular organisms → Bacteria	14509	Open in IMG/M
3300006854\|Ga0075425_100402613	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300006854\|Ga0075425_101602554	Not Available	734	Open in IMG/M
3300006871\|Ga0075434_100662311	Not Available	1062	Open in IMG/M
3300006904\|Ga0075424_101968768	Not Available	617	Open in IMG/M
3300009094\|Ga0111539_10430251	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300009094\|Ga0111539_12106628	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300009137\|Ga0066709_101690730	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Ulvophyceae → TCBD clade → Bryopsidales → Ostreobineae → Ostreobiaceae → Ostreobium → Ostreobium quekettii	898	Open in IMG/M
3300009147\|Ga0114129_10170114	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2971	Open in IMG/M
3300009147\|Ga0114129_11390682	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300009156\|Ga0111538_10046458	All Organisms → cellular organisms → Bacteria	5574	Open in IMG/M
3300009157\|Ga0105092_10126075	Not Available	1415	Open in IMG/M
3300009162\|Ga0075423_11015700	Not Available	881	Open in IMG/M
3300009177\|Ga0105248_11449198	Not Available	777	Open in IMG/M
3300009553\|Ga0105249_13452756	Not Available	509	Open in IMG/M
3300010040\|Ga0126308_10205712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1266	Open in IMG/M
3300010366\|Ga0126379_10424568	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1384	Open in IMG/M
3300010399\|Ga0134127_10716111	Not Available	1042	Open in IMG/M
3300012200\|Ga0137382_10465480	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300012203\|Ga0137399_10336335	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300012205\|Ga0137362_10155716	All Organisms → cellular organisms → Bacteria → Proteobacteria	1955	Open in IMG/M
3300012362\|Ga0137361_10117379	All Organisms → cellular organisms → Bacteria → Proteobacteria	2340	Open in IMG/M
3300012507\|Ga0157342_1036992	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012519\|Ga0157352_1032167	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300012582\|Ga0137358_10151695	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300012685\|Ga0137397_10054335	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	2879	Open in IMG/M
3300012685\|Ga0137397_10296717	Not Available	1204	Open in IMG/M
3300012882\|Ga0157304_1102733	Not Available	523	Open in IMG/M
3300012918\|Ga0137396_10632298	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012922\|Ga0137394_10006982	All Organisms → cellular organisms → Bacteria	8696	Open in IMG/M
3300012922\|Ga0137394_11339614	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012925\|Ga0137419_10518089	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300012927\|Ga0137416_10097752	All Organisms → cellular organisms → Bacteria → Proteobacteria	2200	Open in IMG/M
3300012930\|Ga0137407_10199772	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300012944\|Ga0137410_10629668	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300013100\|Ga0157373_10515960	Not Available	864	Open in IMG/M
3300013100\|Ga0157373_10716265	Not Available	734	Open in IMG/M
3300013308\|Ga0157375_10724288	Not Available	1147	Open in IMG/M
3300013308\|Ga0157375_11973247	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300014270\|Ga0075325_1005214	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300014300\|Ga0075321_1047885	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300014301\|Ga0075323_1107383	Not Available	606	Open in IMG/M
3300015241\|Ga0137418_10412579	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300015371\|Ga0132258_13702880	Not Available	1043	Open in IMG/M
3300015374\|Ga0132255_100500909	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300016270\|Ga0182036_10765691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	785	Open in IMG/M
3300016341\|Ga0182035_10077511	All Organisms → cellular organisms → Bacteria → Proteobacteria	2362	Open in IMG/M
3300016371\|Ga0182034_10298090	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1291	Open in IMG/M
3300016445\|Ga0182038_10187363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1616	Open in IMG/M
3300017936\|Ga0187821_10448966	Not Available	534	Open in IMG/M
3300018061\|Ga0184619_10144701	Not Available	1083	Open in IMG/M
3300018476\|Ga0190274_10745292	Not Available	1030	Open in IMG/M
3300019878\|Ga0193715_1033811	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300019879\|Ga0193723_1143733	Not Available	645	Open in IMG/M
3300019881\|Ga0193707_1022613	All Organisms → cellular organisms → Bacteria	2077	Open in IMG/M
3300020001\|Ga0193731_1073604	Not Available	892	Open in IMG/M
3300020060\|Ga0193717_1096429	Not Available	942	Open in IMG/M
3300021344\|Ga0193719_10174669	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	922	Open in IMG/M
3300021560\|Ga0126371_11566024	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	786	Open in IMG/M
3300025537\|Ga0210061_1021050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1061	Open in IMG/M
3300025885\|Ga0207653_10397327	Not Available	540	Open in IMG/M
3300025912\|Ga0207707_10706666	Not Available	846	Open in IMG/M
3300025917\|Ga0207660_11079839	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300025925\|Ga0207650_11291520	Not Available	621	Open in IMG/M
3300025930\|Ga0207701_11384227	Not Available	574	Open in IMG/M
3300026051\|Ga0208911_1020073	Not Available	645	Open in IMG/M
3300026095\|Ga0207676_10575083	Not Available	1079	Open in IMG/M
3300027717\|Ga0209998_10081162	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300027765\|Ga0209073_10005740	All Organisms → cellular organisms → Bacteria	3086	Open in IMG/M
3300027787\|Ga0209074_10008358	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300027876\|Ga0209974_10024537	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300027909\|Ga0209382_10245518	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300028536\|Ga0137415_10572513	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium fosmid pJB190D12_contig II	939	Open in IMG/M
3300028807\|Ga0307305_10567989	Not Available	506	Open in IMG/M
3300028828\|Ga0307312_10232365	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300028828\|Ga0307312_10665017	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031421\|Ga0308194_10397153	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → Geobacter benzoatilyticus	502	Open in IMG/M
3300031538\|Ga0310888_10269889	Not Available	962	Open in IMG/M
3300031548\|Ga0307408_100104005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_50_11	2169	Open in IMG/M
3300031744\|Ga0306918_10343016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1158	Open in IMG/M
3300031890\|Ga0306925_10567320	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1202	Open in IMG/M
3300031912\|Ga0306921_10153415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2696	Open in IMG/M
3300031944\|Ga0310884_10463236	Not Available	739	Open in IMG/M
3300031946\|Ga0310910_10335802	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1193	Open in IMG/M
3300032003\|Ga0310897_10112151	Not Available	1100	Open in IMG/M
3300032017\|Ga0310899_10239206	Not Available	820	Open in IMG/M
3300032059\|Ga0318533_10363224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1055	Open in IMG/M
3300032144\|Ga0315910_11620008	Not Available	505	Open in IMG/M
3300032157\|Ga0315912_10480819	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	987	Open in IMG/M
3300032829\|Ga0335070_10037884	All Organisms → cellular organisms → Bacteria	5410	Open in IMG/M
3300033289\|Ga0310914_10566326	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1026	Open in IMG/M
3300033412\|Ga0310810_10003725	All Organisms → cellular organisms → Bacteria	16713	Open in IMG/M
3300033412\|Ga0310810_10016629	All Organisms → cellular organisms → Bacteria → Proteobacteria	8772	Open in IMG/M
3300033475\|Ga0310811_10900687	Not Available	799	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.59%
Host-Associated	Host-Associated	26.67%
Engineered	Engineered	0.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	26.67%
Aquatic	Environmental → Aquatic	5.93%
Solid Waste	Engineered → Solid Waste	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.15%
Sediment	Environmental → Aquatic → Sediment	2.96%
Freshwater	Environmental → Aquatic → Freshwater	1.48%
Marine	Environmental → Aquatic → Marine	1.48%
Roots	Host-Associated → Plants → Roots	0.74%
Grass	Engineered → Solid Waste → Grass	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.30%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.74%
Composting	Engineered → Solid Waste → Grass → Composting	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.74%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.44%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.70%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.22%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003503	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM	Host-Associated	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014300	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D1	Environmental	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026051	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001363929	2001200001	Soil	MDRVAPDVKDITEQEIPGTGQWHQKFTLFMPGDPVTEQPFERTGTKLDLSDPQVRIDLWKTLKDHRFSD
4ZMR_00779010	2170459017	Switchgrass, Maize And Mischanthus Litter	DLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD
JGI11643J11755_112988832	3300000787	Soil	EIAGTGQWHQKFTLFMPGDPETEQPFDRTGIKLDLSDPQVRIDLWKTLKDPRFND*
F14TB_1007858321	3300001431	Soil	MKRIAPEVKDLTEEEIPGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTVRDHRFSD*
soilL2_101401872	3300003319	Sugarcane Root And Bulk Soil	VKRIAPEAKDISEQEIAATGQWHQKFTLFMPGDPATEQPFDRIGSKLDLSDPQIRIDLWKTLRDPRLSD*
soilH2_100448803	3300003324	Sugarcane Root And Bulk Soil	MKRIAPEVKDLAEEEIPGTGQWHQKFTLFMPGDPATEQPFDRIGVKLDLSDLQVRIDLWKTLKDPRFND*
soilH2_100560772	3300003324	Sugarcane Root And Bulk Soil	MKRIAPAIKDFTEEEIFGTGQWHQKFTLFMPGDPATEQPFDRIGSKLDLRDPQVRIDLWKTLRDPRFSD*
JGI26141J51220_10088121	3300003503	Arabidopsis Thaliana Rhizosphere	EQEIAGTGQWHQKFTLFMPGDPETEQPFDRTGIKLDLSDPQVRIDLWKTLKDPRFND*
Ga0055466_100115262	3300003997	Natural And Restored Wetlands	LSEEEITGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLKDDRFGE*
Ga0062593_1005147372	3300004114	Soil	VKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0063356_1002862082	3300004463	Arabidopsis Thaliana Rhizosphere	MKPLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPQVRIDLWKTLKDDRLND*
Ga0062595_1008874011	3300004479	Soil	MKRVAPEVKDLVEEEIRGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTRRDDRFAD*
Ga0065715_100240602	3300005293	Miscanthus Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0065705_101866542	3300005294	Switchgrass Rhizosphere	VLRTTQGAEVKRLAPEVKDLTEVEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFIG*
Ga0066388_1015374552	3300005332	Tropical Forest Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFSD*
Ga0070680_1002536744	3300005336	Corn Rhizosphere	VKRVAPEVKDVTEQEIAGTGQWHQKFTLFMPDDPATEQPFDRIGIKLDLSDPQLRIDLWKTLRDPRFSD*
Ga0070682_1001288422	3300005337	Corn Rhizosphere	LFDDLLLQQTGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0070689_1013277451	3300005340	Switchgrass Rhizosphere	MQGAEVKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0070659_1010253532	3300005366	Corn Rhizosphere	VKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0070709_101798542	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0070681_108073631	3300005458	Corn Rhizosphere	VKRVAPEVKDVTEQEIAGTGQWHQKFTLFMPDDPATEQPFDRIGIKLDLSDPQVRIDLWKTLRDPRFSD*
Ga0070741_1000007949	3300005529	Surface Soil	MKPLAPEIKNLTEEEIPGTGQWHQKFTLFMPGDPSTEQPFDRIGVKLNLSDPQVRIDLWKTLRDPRLSD*
Ga0070684_1010311231	3300005535	Corn Rhizosphere	MQGAEVKRLAPEVKDLTEVEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFIG*
Ga0070697_1019821662	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	KTPMKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTLKDHRFSD*
Ga0070695_1008188111	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VKRVAPEVKDVSEQEIAGTGQWHQKFTLFMPGDPATEQPFDRIGIKLDLSDPQVRIDLWKTLRDPRFSD*
Ga0070696_1015043312	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	RMERVAPDVKDIAEQEIPGTGQWHQKFTLFMPGEPATEQPFDRTGAKLDLLDPQVRIDLWKSLKHSAGSD*
Ga0066661_102080052	3300005554	Soil	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDFWRTLKDHRFGD*
Ga0066704_106953941	3300005557	Soil	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWQTLKDHRFGD*
Ga0068857_1007151932	3300005577	Corn Rhizosphere	VLRTMQGAEVKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0068864_1002277402	3300005618	Switchgrass Rhizosphere	DDLLLQQTGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0074470_107740927	3300005836	Sediment (Intertidal)	MGLVAPDLKDITEEEIPGTGQWHQKFTLFMAGDPDSEQPFDRTGVKLDLTDPQVRIDLWRTLRDPRFDD*
Ga0074470_111637121	3300005836	Sediment (Intertidal)	MEPLAPEVKDITEQETPGTGQWHQKFTLFMPGDPVTEQSFDRTGTRLDLADPQVRIDLWKTLKDDRFDS*
Ga0074470_113933036	3300005836	Sediment (Intertidal)	MEPLAPEVKDVSEQEIPGTGQWRQKFTLFMPGDPVTEQPFDRTGTRLDLSNPQVRIELWKTLKDDRFSD*
Ga0070715_108244001	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD*
Ga0068871_1009417902	3300006358	Miscanthus Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTL
Ga0079222_100297423	3300006755	Agricultural Soil	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDAVSEQPFNRIGTRLDLSDPQVRIDLWK
Ga0079221_100569723	3300006804	Agricultural Soil	LFDDLLLQETGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0079220_100051902	3300006806	Agricultural Soil	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDAVSEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0075421_1000375553	3300006845	Populus Rhizosphere	MKRVAPEVKDVTEEEIPGTGQWHQKFTLFMPGDPATEQPFDRIGTKLDLSDPQVRIDLWKTLKDRRFGD*
Ga0075433_100533734	3300006852	Populus Rhizosphere	MKPVAPEVKDLIEREIAGTGQWHQTFTLFMPGDPATEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFAD*
Ga0075433_109997212	3300006852	Populus Rhizosphere	PEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFGD*
Ga0075425_1000044142	3300006854	Populus Rhizosphere	MKPVAPEVKDLIEREIAGTGQWHQTFTLIMPGDPATEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFAD*
Ga0075425_1004026131	3300006854	Populus Rhizosphere	MERVAPEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFGD*
Ga0075425_1016025542	3300006854	Populus Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGAKLDLSDPRVRIDLWKTLKDNRFAD*
Ga0075434_1006623111	3300006871	Populus Rhizosphere	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFGD*
Ga0075424_1019687681	3300006904	Populus Rhizosphere	GAEVKRLAPEVKDLTEVEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFIG*
Ga0111539_104302513	3300009094	Populus Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGAKLDLSDPRVRIDLWKTLKD
Ga0111539_121066282	3300009094	Populus Rhizosphere	VLRTTQGAEVKRLAPEVKDLTEVEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTL
Ga0066709_1016907301	3300009137	Grasslands Soil	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGDENLRHRRESI*
Ga0114129_101701141	3300009147	Populus Rhizosphere	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDFSDPQVRIDLWKTLKDHRFSD*
Ga0114129_113906822	3300009147	Populus Rhizosphere	MERVAPEVKDVTEEEIPGTGLWHQQFTIFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFGD*
Ga0111538_100464585	3300009156	Populus Rhizosphere	MKPVAPEVKDLIEREIAGTGQWHQTFTLIMPGGPATEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFAD*
Ga0105092_101260752	3300009157	Freshwater Sediment	MKRVAPDVKDISEQEIPGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFSD*
Ga0075423_110157001	3300009162	Populus Rhizosphere	EIPGTGQWHQTFTLFMPGDPVTEQPFNRIGAKLDLSDPRVRIDLWKALKDNRFAD*
Ga0105248_114491981	3300009177	Switchgrass Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTERPFNRIGSKLDLSDPQVRIDLWKTLRDD
Ga0105249_134527561	3300009553	Switchgrass Rhizosphere	LTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0126308_102057122	3300010040	Serpentine Soil	MKSLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGSKLDLADPQVRIDLWKTLKDDRFND*
Ga0126379_104245684	3300010366	Tropical Forest Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDSQVRIDLWKTLKDDRFSD*
Ga0134127_107161111	3300010399	Terrestrial Soil	KDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0137382_104654802	3300012200	Vadose Zone Soil	MQRVAPEVKDLTEEKIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD*
Ga0137399_103363352	3300012203	Vadose Zone Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTLKDHRFGD*
Ga0137362_101557161	3300012205	Vadose Zone Soil	MERVAPEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD*
Ga0137361_101173792	3300012362	Vadose Zone Soil	MERVAPEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWQTLKDHRFGD*
Ga0157342_10369922	3300012507	Arabidopsis Rhizosphere	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKD
Ga0157352_10321672	3300012519	Unplanted Soil	MKRLAPEVKDLTEEEIPGIGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0137358_101516953	3300012582	Vadose Zone Soil	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLRRTLKDHRFGD*
Ga0137397_100543354	3300012685	Vadose Zone Soil	MKRLAPEVKGITEEEIPGTGPWHQKFTLFMRGDPATEQLFDHTGTKLDLSDPQVRIDLWKTLKDHRFSD*
Ga0137397_102967171	3300012685	Vadose Zone Soil	MERVAPEVKDLTEEEISGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFND*
Ga0157304_11027331	3300012882	Soil	VAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0137396_106322981	3300012918	Vadose Zone Soil	MKRVAPEVKDLTEEKIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD*
Ga0137394_100069824	3300012922	Vadose Zone Soil	MERVAPEAKDLTEEEISGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWKTLKDHRFND*
Ga0137394_113396142	3300012922	Vadose Zone Soil	RLAPEVKGITEEEIPGTGPWHQKFTLFMRGDPATEQLFDHTGTKLDLSDPQVRIDLWKTLKDHRSSD*
Ga0137419_105180892	3300012925	Vadose Zone Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDHTGTKLDLSDPQVRIDLWKTLKDHRSSD*
Ga0137416_100977523	3300012927	Vadose Zone Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDHTGTKLDLSDPQVRIDLWKTLKDHRPSD*
Ga0137407_101997721	3300012930	Vadose Zone Soil	EIPGTDQWHQKFTLFMPGDPVTEQPVDRTGTKLDLSDPQVRIDLWKTLKDYRFSD*
Ga0137410_106296682	3300012944	Vadose Zone Soil	MKRLAPEVKGITEEEIPGTGPWHQKFTLFMRGDPATEQLFDHTGTKLDLSDPQVRIDLWKTLKDHRSSD*
Ga0157373_105159602	3300013100	Corn Rhizosphere	DLLLQQTGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0157373_107162652	3300013100	Corn Rhizosphere	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVPEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0157375_107242882	3300013308	Miscanthus Rhizosphere	CMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD*
Ga0157375_119732472	3300013308	Miscanthus Rhizosphere	VKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFI
Ga0075325_10052142	3300014270	Natural And Restored Wetlands	MRPAAPEVKELSEEEITGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLKDDRFGE*
Ga0075321_10478851	3300014300	Natural And Restored Wetlands	KPFEERIRMKRAAPEVKDSIEEEISGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLRDDRFDD*
Ga0075323_11073831	3300014301	Natural And Restored Wetlands	DSIEEEISGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLRDDRFDD
Ga0137418_104125792	3300015241	Vadose Zone Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQVRIDLWKTLKDHRSSD*
Ga0132258_137028802	3300015371	Arabidopsis Rhizosphere	MKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGAKLDLSDPRVRIDLWKALKDNRFAD*
Ga0132255_1005009092	3300015374	Arabidopsis Rhizosphere	MKRLAPEVKDLTEEEIPGTGQWRQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG*
Ga0182036_107656912	3300016270	Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIELWKTLKDDRFSD
Ga0182035_100775114	3300016341	Soil	VKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFSD
Ga0182034_102980904	3300016371	Soil	ALEEFCMKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFSD
Ga0182038_101873634	3300016445	Soil	VKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSHLQVRIDLWKTLKDDRFSD
Ga0187821_104489661	3300017936	Freshwater Sediment	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDAISEQPFNRIGTRLDLSDPQVRIDLWKTLKDDRFIG
Ga0184619_101447012	3300018061	Groundwater Sediment	MKRVAPEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD
Ga0190274_107452921	3300018476	Soil	MKPLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPQVRIDLWKTLRDDRFND
Ga0193715_10338112	3300019878	Soil	MERVAPEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD
Ga0193723_11437331	3300019879	Soil	ERVAPEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD
Ga0193707_10226132	3300019881	Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTLKDHRFGD
Ga0193731_10736041	3300020001	Soil	APEVKDVTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWQTLKDHRFGD
Ga0193717_10964291	3300020060	Soil	MKRVAPEVKDVTEEEIPGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLSAPQVRIDLWKTLKDHRFSD
Ga0193719_101746692	3300021344	Soil	MKRLAPEVKDITEEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTL
Ga0126371_115660242	3300021560	Tropical Forest Soil	MKRVVPEVKDLTEQEIPGTGQWHQTFTLFMPDDPITEQPFNRLGTKLDLSDPQVRI
Ga0210061_10210502	3300025537	Natural And Restored Wetlands	MRPAAPEVKELSEEEITGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLKDDRFGE
Ga0207653_103973271	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	DLLLQQTGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWKTLRDDRFTD
Ga0207707_107066661	3300025912	Corn Rhizosphere	VKRVAPEVKDVTEQEIAGTGQWHQKFTLFMPDDPATEQPFDRIGIKLDLSDPQVRIDLWKTLRDPRFSD
Ga0207660_110798392	3300025917	Corn Rhizosphere	VKRVAPEVKYVTEQEIAGTGQWHQKFTLFMPDDPATEQPFDRIGIKLDLSDPQLRIDLWKTLRDPRFSD
Ga0207650_112915201	3300025925	Switchgrass Rhizosphere	RLPMKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG
Ga0207701_113842272	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKPLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPQVRIDLWKTLKDDRFND
Ga0208911_10200731	3300026051	Natural And Restored Wetlands	MRPAAPEVKELSEEEITGTGQWHQKFTLFMPGDPDTEQPFDRTGIKLDLSDPQVRIDLWKTLKDD
Ga0207676_105750831	3300026095	Switchgrass Rhizosphere	LFDDLLLQQTGICMKRVAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGSKLDLSDPQVRIDLWK
Ga0209998_100811622	3300027717	Arabidopsis Thaliana Rhizosphere	MKRVAPEVKDITEEEIAGTGQWHQKFTLFMVGDPMTEQPFDRTGTKLDLSDARVRIDLWKTLKDPRFSD
Ga0209073_100057402	3300027765	Agricultural Soil	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDAVSEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG
Ga0209074_100083582	3300027787	Agricultural Soil	MKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDAVSEQPFNRIGTRLDLSDPQVRIDLWKTLKDDRFIG
Ga0209974_100245372	3300027876	Arabidopsis Thaliana Rhizosphere	MKRVAPEVKDITEEEIAGTGQWHQKFTLFMAGDPMTEQPFDRTGTKLDLSDARVRIDLWKTLKDPRFSD
Ga0209382_102455183	3300027909	Populus Rhizosphere	MKRVAPEVKDVTEEEIPGTGQWHQKFTLFMPGDPATEQPFDRIGTKLDLSDPQVRIDLWKTLKDRRFGD
Ga0137415_105725132	3300028536	Vadose Zone Soil	MKRLAPEVKDITEEEIPGTGQWHQNFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTL
Ga0307305_105679892	3300028807	Soil	APEVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWRTLKDHRFGD
Ga0307312_102323653	3300028828	Soil	EVKDLTEEEIPGTGLWHQKFTLFMPGDPVTEQPFDRTGTKLDLSDPQVRIDLWQTLKDHRFGD
Ga0307312_106650171	3300028828	Soil	EEEIPGTGQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTLKDHRSGD
Ga0308194_103971531	3300031421	Soil	RLAPEVKDITEEEIPGTSQWHQKFTLFMRGDPATEQLFDRTGTKLDLSDPQIRIDLWKTLKDHRFGD
Ga0310888_102698891	3300031538	Soil	MKRVAPEVKDLTEEEIPGTSQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG
Ga0307408_1001040052	3300031548	Rhizosphere	MKPLAPEVKDISEQEIIGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPRVRIDLWKTLKDDRFND
Ga0306918_103430161	3300031744	Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFSD
Ga0306925_105673201	3300031890	Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQSFNRIGTKLDLSDSQVRIDLWKTLKDDR
Ga0306921_101534152	3300031912	Soil	MKRVAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQSFNRIGTKLDLSDSQVRIDLWKTLKDDRFTD
Ga0310884_104632362	3300031944	Soil	MKPLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPQVRIDLWKTLKDDRLND
Ga0310910_103358022	3300031946	Soil	VKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQSFNRIGTKLDLSDSQVRIDLWKTLKDDRFTD
Ga0310897_101121512	3300032003	Soil	RLPMKRVAPEVKDLTEEEIPGTSQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG
Ga0310899_102392061	3300032017	Soil	MKPLAPEVKDISEQEITGTGQWHQKFTLFMPGDPVTEQPFDRTGTKLDLADPQVRIDLWKTLKD
Ga0318533_103632241	3300032059	Soil	VKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQPFNRVGTKLDLSDPQVRIDLWKTLKDDRFSD
Ga0315910_116200082	3300032144	Soil	MERVAPEIKDIVEHEIPGTGQWHQKFTLFMPGDPVTEQPFDRTGLKLDLSDPRVRIDLWKTLKDDRFGD
Ga0315912_104808192	3300032157	Soil	MKPLAPEVKDMSEQEITGTGQWHQKFTLFMPGDPLTEQPFDRTGTKLDLADPQVRIDLWKALKDDRFSD
Ga0335070_100378847	3300032829	Soil	MERVAPEIKDVIECEIPGTGQWHQKFTLFMPGDPVTEQPFDRTGAKLDLSDPRVRIDLWKTLKDDRFSD
Ga0310914_105663261	3300033289	Soil	VAPEVKDLTEQEIPGTGQWHQTFTLFMPGDPVTEQSFNRIGTKLDLSDSQVRIDLWKTLKDDRFTD
Ga0310810_1000372511	3300033412	Soil	MKRLAPDVKNVFEEEIAGTGQWHQKFTLFMPGDPATEQPFDRLGIKLDLSDPQVRIDLWKTLRDSRFSD
Ga0310810_100166298	3300033412	Soil	VLRTTQGAEVKRLAPEVKDLTEVEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTKLDLSDPQVRIDLWKTLKDDRFIG
Ga0310811_109006872	3300033475	Soil	PMKRLAPEVKDLTEEEIPGTGQWHQTFTLFMPGDPVTEQPFNRIGTRLDLSDPQVRIDLWKTVKDDRFIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058471

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences