Metagenome / Metatranscriptome Family F058487

Basic Information
Family ID	F058487
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	93 residues
Representative Sequence	MARRSGVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALSLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVDTTHQIPNVTLTRAVIRLLNL
Number of Associated Samples	121
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.22 %
% of genes near scaffold ends (potentially truncated)	27.41 %
% of genes from short scaffolds (< 2000 bps)	82.22 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Most Common Taxonomy
Group	Bacteria (60.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.259 % of family members)
Environment Ontology (ENVO)	Unclassified (29.630 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.481 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.39% β-sheet: 25.20% Coil/Unstructured: 50.41%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
d.177.1.1: FAH	d1gtta1	1gtt	0.55014
d.177.1.0: automated matches	d5d2ka_	5d2k	0.53873
d.189.1.0: automated matches	d4hasa_	4has	0.53392
d.177.1.1: FAH	d1nkqa_	1nkq	0.53183
d.92.1.0: automated matches	d4iuwa_	4iuw	0.53081

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF00072	Response_reg	12.59
PF01068	DNA_ligase_A_M	5.93
PF03404	Mo-co_dimer	5.19
PF00753	Lactamase_B	3.70
PF00691	OmpA	2.96
PF02518	HATPase_c	2.22
PF04255	DUF433	1.48
PF13560	HTH_31	1.48
PF05359	DUF748	1.48
PF12850	Metallophos_2	1.48
PF05494	MlaC	1.48
PF14226	DIOX_N	0.74
PF01975	SurE	0.74
PF00571	CBS	0.74
PF00392	GntR	0.74
PF01842	ACT	0.74
PF04972	BON	0.74
PF09335	SNARE_assoc	0.74
PF00589	Phage_integrase	0.74
PF00528	BPD_transp_1	0.74
PF06052	3-HAO	0.74
PF04909	Amidohydro_2	0.74
PF07589	PEP-CTERM	0.74
PF01208	URO-D	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	5.93
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	5.93
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.48
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.48
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	1.48
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.74
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.74
COG0496	Broad specificity polyphosphatase and 5'/3'-nucleotidase SurE	Replication, recombination and repair [L]	0.74
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.74
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.74

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.15 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.41 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.48 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8.89 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	6.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	6.67 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.44 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.74 %
Tepidamorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae	0.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	6.67 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	6.67 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	6.67 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.44 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.74 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	0.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_12683030	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300000550\|F24TB_10587115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1546	Open in IMG/M
3300000559\|F14TC_100001465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	597	Open in IMG/M
3300000956\|JGI10216J12902_105803683	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300002245\|JGIcombinedJ26739_100833947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	803	Open in IMG/M
3300003347\|JGI26128J50194_1007353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	710	Open in IMG/M
3300003911\|JGI25405J52794_10123841	Not Available	584	Open in IMG/M
3300004139\|Ga0058897_10812338	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1350	Open in IMG/M
3300004156\|Ga0062589_100992256	Not Available	783	Open in IMG/M
3300004463\|Ga0063356_100013818	All Organisms → cellular organisms → Bacteria → Proteobacteria	7374	Open in IMG/M
3300004479\|Ga0062595_100076651	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300005174\|Ga0066680_10137072	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300005293\|Ga0065715_10072444	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005295\|Ga0065707_10208229	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300005332\|Ga0066388_103334223	Not Available	820	Open in IMG/M
3300005341\|Ga0070691_10776914	Not Available	581	Open in IMG/M
3300005437\|Ga0070710_10387850	All Organisms → cellular organisms → Bacteria → Proteobacteria	933	Open in IMG/M
3300005445\|Ga0070708_100003573	All Organisms → cellular organisms → Bacteria	12188	Open in IMG/M
3300005467\|Ga0070706_100612612	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300005471\|Ga0070698_100755516	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300005563\|Ga0068855_102417011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	524	Open in IMG/M
3300005568\|Ga0066703_10398678	Not Available	826	Open in IMG/M
3300005586\|Ga0066691_10170958	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300005713\|Ga0066905_100002890	All Organisms → cellular organisms → Bacteria → Proteobacteria	6598	Open in IMG/M
3300005875\|Ga0075293_1002916	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1581	Open in IMG/M
3300005876\|Ga0075300_1023949	Not Available	788	Open in IMG/M
3300005881\|Ga0075294_1038684	Not Available	512	Open in IMG/M
3300005937\|Ga0081455_10001029	All Organisms → cellular organisms → Bacteria → Proteobacteria	35164	Open in IMG/M
3300006047\|Ga0075024_100449758	Not Available	665	Open in IMG/M
3300006163\|Ga0070715_10200848	All Organisms → cellular organisms → Bacteria → Proteobacteria	1013	Open in IMG/M
3300006755\|Ga0079222_10410330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	948	Open in IMG/M
3300006804\|Ga0079221_10489860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	794	Open in IMG/M
3300006806\|Ga0079220_10422708	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300006854\|Ga0075425_100461052	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300006914\|Ga0075436_100257330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1244	Open in IMG/M
3300007255\|Ga0099791_10328823	Not Available	730	Open in IMG/M
3300007265\|Ga0099794_10237595	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300009038\|Ga0099829_10034029	All Organisms → cellular organisms → Bacteria	3661	Open in IMG/M
3300009038\|Ga0099829_10442626	Not Available	1076	Open in IMG/M
3300009089\|Ga0099828_10096877	All Organisms → cellular organisms → Bacteria	2544	Open in IMG/M
3300009143\|Ga0099792_10910164	Not Available	583	Open in IMG/M
3300009148\|Ga0105243_12611269	Not Available	545	Open in IMG/M
3300010047\|Ga0126382_10065655	All Organisms → cellular organisms → Bacteria	2200	Open in IMG/M
3300010362\|Ga0126377_11097803	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300011270\|Ga0137391_11109194	Not Available	639	Open in IMG/M
3300012202\|Ga0137363_10642624	Not Available	897	Open in IMG/M
3300012203\|Ga0137399_10130328	All Organisms → cellular organisms → Bacteria	1987	Open in IMG/M
3300012205\|Ga0137362_10153830	Not Available	1968	Open in IMG/M
3300012205\|Ga0137362_10743027	Not Available	842	Open in IMG/M
3300012211\|Ga0137377_10156279	Not Available	2186	Open in IMG/M
3300012211\|Ga0137377_11247620	Not Available	673	Open in IMG/M
3300012349\|Ga0137387_10843852	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012355\|Ga0137369_10214235	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300012361\|Ga0137360_11886345	Not Available	503	Open in IMG/M
3300012363\|Ga0137390_11061080	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300012685\|Ga0137397_10043464	All Organisms → cellular organisms → Bacteria	3214	Open in IMG/M
3300012906\|Ga0157295_10025716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1224	Open in IMG/M
3300012912\|Ga0157306_10091115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	864	Open in IMG/M
3300012922\|Ga0137394_10036498	All Organisms → cellular organisms → Bacteria	4015	Open in IMG/M
3300012929\|Ga0137404_10975192	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300012929\|Ga0137404_11136053	Not Available	717	Open in IMG/M
3300012944\|Ga0137410_10020270	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4574	Open in IMG/M
3300015077\|Ga0173483_10131885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1081	Open in IMG/M
3300015241\|Ga0137418_11009220	Not Available	601	Open in IMG/M
3300015264\|Ga0137403_10893171	Not Available	739	Open in IMG/M
3300015371\|Ga0132258_12293281	Not Available	1354	Open in IMG/M
3300017936\|Ga0187821_10078494	Not Available	1201	Open in IMG/M
3300017993\|Ga0187823_10074464	Not Available	975	Open in IMG/M
3300017994\|Ga0187822_10024305	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300017997\|Ga0184610_1068333	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300018000\|Ga0184604_10020435	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300018027\|Ga0184605_10153116	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300018028\|Ga0184608_10412221	Not Available	585	Open in IMG/M
3300018052\|Ga0184638_1128391	Not Available	924	Open in IMG/M
3300018053\|Ga0184626_10101016	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1222	Open in IMG/M
3300018054\|Ga0184621_10067231	Not Available	1227	Open in IMG/M
3300018075\|Ga0184632_10098083	Not Available	1284	Open in IMG/M
3300018075\|Ga0184632_10334984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300018076\|Ga0184609_10042738	Not Available	1910	Open in IMG/M
3300018078\|Ga0184612_10043236	Not Available	2341	Open in IMG/M
3300018422\|Ga0190265_10121216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	2499	Open in IMG/M
3300018429\|Ga0190272_10078005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2039	Open in IMG/M
3300018429\|Ga0190272_10558414	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300018429\|Ga0190272_13150965	Not Available	513	Open in IMG/M
3300019458\|Ga0187892_10003929	All Organisms → cellular organisms → Bacteria → Proteobacteria	26092	Open in IMG/M
3300020003\|Ga0193739_1014147	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
3300020003\|Ga0193739_1155935	Not Available	542	Open in IMG/M
3300020006\|Ga0193735_1137925	Not Available	647	Open in IMG/M
3300020170\|Ga0179594_10415996	Not Available	510	Open in IMG/M
3300020580\|Ga0210403_10238978	Not Available	1491	Open in IMG/M
3300021073\|Ga0210378_10330537	Not Available	570	Open in IMG/M
3300021088\|Ga0210404_10208290	Not Available	1051	Open in IMG/M
3300021171\|Ga0210405_10359892	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300021406\|Ga0210386_11542553	Not Available	553	Open in IMG/M
3300021432\|Ga0210384_10059625	Not Available	3450	Open in IMG/M
3300021972\|Ga0193737_1057595	Not Available	552	Open in IMG/M
3300022726\|Ga0242654_10026815	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300023066\|Ga0247793_1006172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1625	Open in IMG/M
3300025905\|Ga0207685_10819116	Not Available	514	Open in IMG/M
3300025910\|Ga0207684_10005007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	12350	Open in IMG/M
3300025910\|Ga0207684_10268421	All Organisms → cellular organisms → Bacteria	1472	Open in IMG/M
3300025910\|Ga0207684_10444562	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300025912\|Ga0207707_10342441	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300025915\|Ga0207693_10266435	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300026005\|Ga0208285_1003731	Not Available	993	Open in IMG/M
3300026285\|Ga0209438_1139177	Not Available	645	Open in IMG/M
3300026360\|Ga0257173_1049138	Not Available	595	Open in IMG/M
3300026371\|Ga0257179_1017596	Not Available	807	Open in IMG/M
3300026482\|Ga0257172_1016120	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300026514\|Ga0257168_1003028	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2577	Open in IMG/M
3300026514\|Ga0257168_1077225	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300026535\|Ga0256867_10018752	Not Available	2977	Open in IMG/M
3300026793\|Ga0207441_104456	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300027552\|Ga0209982_1017678	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300027617\|Ga0210002_1018952	Not Available	1102	Open in IMG/M
3300027651\|Ga0209217_1075253	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	987	Open in IMG/M
3300027846\|Ga0209180_10018571	All Organisms → cellular organisms → Bacteria	3665	Open in IMG/M
3300028814\|Ga0307302_10479695	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300028819\|Ga0307296_10535196	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300028828\|Ga0307312_10300775	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300028884\|Ga0307308_10469957	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031152\|Ga0307501_10088149	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10058172	Not Available	1014	Open in IMG/M
3300031229\|Ga0299913_10181175	All Organisms → cellular organisms → Bacteria → Proteobacteria	2083	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1054354	Not Available	960	Open in IMG/M
3300031716\|Ga0310813_10115553	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300031720\|Ga0307469_10382174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1195	Open in IMG/M
3300031720\|Ga0307469_11381759	Not Available	671	Open in IMG/M
3300031944\|Ga0310884_10540868	Not Available	689	Open in IMG/M
3300032180\|Ga0307471_100054248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3333	Open in IMG/M
3300032180\|Ga0307471_100888238	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300032180\|Ga0307471_102407454	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300032421\|Ga0310812_10580376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	502	Open in IMG/M
3300033513\|Ga0316628_101506443	Not Available	896	Open in IMG/M
3300034257\|Ga0370495_0127299	Not Available	800	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.37%
Host-Associated	Host-Associated	9.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.52%
Aquatic	Environmental → Aquatic	11.85%
Plants	Host-Associated → Plants	9.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.78%
Sediment	Environmental → Aquatic → Sediment	8.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.22%
Freshwater	Environmental → Aquatic → Freshwater	2.96%
Cave	Environmental → Terrestrial → Cave	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.78%
Loam	Environmental → Terrestrial → Soil → Loam	14.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.22%
Sand	Environmental → Terrestrial → Soil → Sand	1.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.22%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.48%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.74%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.07%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.96%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.48%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.48%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.48%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.74%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005876	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401	Environmental	Open in IMG/M
3300005881	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_202	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026005	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300026793	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 (SPAdes)	Environmental	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0087.00008350	2162886012	Miscanthus Rhizosphere	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSIHGLDGLTDVLRAGRVPISEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL
F24TB_105871152	3300000550	Soil	MGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGVTLTPAVIRLLGF*
F14TC_1000014651	3300000559	Soil	MGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGVTL
JGI10216J12902_1058036834	3300000956	Soil	MPMARRSVGRLYITRLRPAVDPVGAEYLLTFGSPTTSEVNLNLGSVRGLDTLTEVLRAAHVSIREIERAWCTLNADTVHEIAGVTLTPTVLRMLAL*
JGIcombinedJ26739_1008339471	3300002245	Forest Soil	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
JGI26128J50194_10073532	3300003347	Arabidopsis Thaliana Rhizosphere	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGL*
JGI25405J52794_101238411	3300003911	Tabebuia Heterophylla Rhizosphere	MARRSTMGRLYITRLRPAVDPVRAEYLLTFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPIGEIERAWSTLAADTMHEIPGVILTPAVLRILGL*
Ga0058897_108123381	3300004139	Forest Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL*
Ga0062589_1009922561	3300004156	Soil	VDPVNAEYLLTFGSPSSAEIALSLGSVRGLDGLTEVLRAGRVPLDEIEKAWRVLAVDIRHQIPNVTLTRALMRLLNL*
Ga0063356_1000138188	3300004463	Arabidopsis Thaliana Rhizosphere	MARRTNVGRVYVVRLRPAVDPVNAEYLLTFGSPSSAEIALSLGSVRGLDGLTEVLRAGRVPLDEIEKAWRVLAVDIRHQIPNVTLTRALMRLLNL*
Ga0062595_1000766512	3300004479	Soil	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSIHGLDGLTDVLRAGRVPISEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
Ga0066680_101370721	3300005174	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAEDIKHQIPDVRLTRALIRLLNL*
Ga0065715_100724442	3300005293	Miscanthus Rhizosphere	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSIHGLDGLTDVLRAGRVPISEIEKAWRVLAVETTHQIPNVMLTRALLRLLNX*
Ga0065707_102082292	3300005295	Switchgrass Rhizosphere	MAGRNSVGRLYIVRLRPAADPVNAEYLLTFGSPSSAEIALDLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITHQIPSITLTRAVIRLLNF*
Ga0066388_1033342232	3300005332	Tropical Forest Soil	MARRSGVGRLYITRLRPAVDPVGAEYLLTFGSPTTSEINLNLGSVRGLDGLTEVLRAARVPLEEIERAWRVLAADTQHYVSNVTLTRAVLRLLGL*
Ga0070691_107769142	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSTAGRLYITRLRPAQDPVGATYLLTFGSAGSREIALSLGSVRGLDGLTEVLRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRAMMRRLDL*
Ga0070710_103878501	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETMHQIPNVMLTRALLRLLNL*
Ga0070708_10000357311	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVSEIEKAWRVLAVDIMHQVPGIRLTRALIRLLNL*
Ga0070706_1006126122	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPRRSSVGRLYIRRLRSAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL*
Ga0070698_1007555162	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPRRSSVGRLYIRRLRPAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL*
Ga0068855_1024170111	3300005563	Corn Rhizosphere	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILG
Ga0066703_103986781	3300005568	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPDIRLTRALIRLLNL*
Ga0066691_101709581	3300005586	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDI
Ga0066905_1000028909	3300005713	Tropical Forest Soil	MARLAMGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGVTLTPAVIRLLGL*
Ga0075293_10029164	3300005875	Rice Paddy Soil	MARRSSVGRLYIARVRPAVDPVNAEYVLAFGSPGTREIAFSLGSIRGLDGLTDVLRAGRVPVSEIEKAWRVLAVEMTHLIPNVTLTPALIRLLGL*
Ga0075300_10239492	3300005876	Rice Paddy Soil	MASGTRLASPMARRSTAGRLYITRLRPAQDPVGATYLLTFGSAGSREIALSLGSVRGLDGLTEVLRAGRVPTGEIEKAWRVLVVETTHQVPNVALTRALMRRLDL*
Ga0075294_10386842	3300005881	Rice Paddy Soil	MARRRSVGRLYITRVRPAVDPVNAEYVLAFGSPGTREIAFSLGSIRGLDGLTDVLRAGRVPVSEIEKAWRVLAVEMTHLI
Ga0081455_1000102921	3300005937	Tabebuia Heterophylla Rhizosphere	MGRLYITRLRPAVDPVRAEYLLTFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPIGEIERAWSTLAADTMHEIPGVILTPAVLRILGL*
Ga0075024_1004497581	3300006047	Watersheds	MARRSSVGRLYIVRLRPAVDPVNAEYLLTYGAPATTEIALNLGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEITHQIPNVTLTRAVIRLLNL*
Ga0070715_102008481	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPVSEIEKAWRVLAVETMHQIPNVMLTRALLRLLNL*
Ga0079222_104103303	3300006755	Agricultural Soil	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSIHGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
Ga0079221_104898602	3300006804	Agricultural Soil	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSATGDITLNLGSIHGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
Ga0079220_104227082	3300006806	Agricultural Soil	MARRSTVGRLYITRIRPAQDPVDATYLLTFGSAGSRDIALSLGSVRGLDGLTGILRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRAMMRRLDL*
Ga0075425_1004610522	3300006854	Populus Rhizosphere	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
Ga0075436_1002573301	3300006914	Populus Rhizosphere	RHYADPQMARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL*
Ga0099791_103288231	3300007255	Vadose Zone Soil	MARRSSVGRLYIRRLRPAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLL
Ga0099794_102375952	3300007265	Vadose Zone Soil	MARRSSVGRLYIRRLRPAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL*
Ga0099829_100340296	3300009038	Vadose Zone Soil	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPVKEIEKAWRVLAVEFRHQIPNVMLTRALIQLLNL*
Ga0099829_104426261	3300009038	Vadose Zone Soil	MARCSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL*
Ga0099828_100968773	3300009089	Vadose Zone Soil	MARRSIVGRLYIVRFRPAVDPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPVKEIEKAWRVLAVEFRHQIPNVMLTRALIQLLNL*
Ga0099792_109101642	3300009143	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL*
Ga0105243_126112691	3300009148	Miscanthus Rhizosphere	VRLRPAADPVNAEYLLTFGSPSSAEIALDLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITHQIPSITLTRAVIRLLNF*
Ga0126382_100656551	3300010047	Tropical Forest Soil	MARRLAMGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGV
Ga0126377_110978032	3300010362	Tropical Forest Soil	MARRSVGRLYITRLRPAVDPVGAEYLLTFGSPTTSEVNLNLGSVRGLDTLTEVLRAAHVSIREIERAWCTLAADTVHEIAGVTLTPTVLRMLAL*
Ga0137391_111091941	3300011270	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLKDVLRAGRVPVNEIEKAWRVLAVDIMHQIPDIRLTRALIRLLNL*
Ga0137363_106426241	3300012202	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIKHQIPDVRLTRALIRLLNL*
Ga0137399_101303282	3300012203	Vadose Zone Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNITLTRAVIRLLNF*
Ga0137362_101538302	3300012205	Vadose Zone Soil	MARRSNVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIKHQIPDVRLTRALIRLLNL*
Ga0137362_107430271	3300012205	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPGIRLPRALIRLLNL*
Ga0137377_101562793	3300012211	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPDVRLTRALIRLLNL*
Ga0137377_112476202	3300012211	Vadose Zone Soil	MARRSSVGRLYIRRLRPAVDPVNAEYLLTFGSPKTSEIALNLGTVRGLDGLTSVPRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL*
Ga0137387_108438522	3300012349	Vadose Zone Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDLTHQIQSMTLTRAVI
Ga0137369_102142353	3300012355	Vadose Zone Soil	MPGRDSGGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPLNEIERAWRVLAADITHQVPNITLTSAVIRLLNL*
Ga0137360_118863451	3300012361	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGI
Ga0137390_110610801	3300012363	Vadose Zone Soil	MARRSSVGRLYIRRPRPAVDPVNAEYLLSFGSPRTSEIALNLGTVRGLDGLITVFRAGRVSLNEIETAWRVLAVEITHQIPNVMLTRAGIQLLNL*
Ga0137397_100434642	3300012685	Vadose Zone Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFDDPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNITLTRAVIRLLNF*
Ga0157295_100257162	3300012906	Soil	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSGRGLDTLTDLLRAARVPIGEIQRAWSALVSDTVHEIAGVTLTPAAIRILGL*
Ga0157306_100911153	3300012912	Soil	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTL
Ga0137394_100364984	3300012922	Vadose Zone Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNVTLTRAVIRLLNF*
Ga0137404_109751922	3300012929	Vadose Zone Soil	MAGRNSVGRLYIVRLRPAADPVNAEYLLTFGSPSSAEIALDLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITHQIPNVTLTRAVIRLLNF*
Ga0137404_111360532	3300012929	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIM
Ga0137410_100202701	3300012944	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYFLTFGSPSIAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL*
Ga0173483_101318851	3300015077	Soil	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVT
Ga0137418_110092201	3300015241	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKARRVLAVDIMHQIPDIKPTRALIRLLNL*
Ga0137403_108931712	3300015264	Vadose Zone Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL
Ga0132258_122932811	3300015371	Arabidopsis Rhizosphere	AQDPVTATYLLTFGSPGSRDIALSLGSVRGLDGLTEVLRAGRVPTGEIEKAWRVLAVETSHQVPNVALTRAMMRRLDL*
Ga0187821_100784943	3300017936	Freshwater Sediment	MARRSTVGRLYITRIRPAQDPVDATYLLTFGSAGSRDIALSLGSVRGLDGLTGILRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRAMMRRLDL
Ga0187823_100744643	3300017993	Freshwater Sediment	VGRLYITRIRPAQDPVDATYLLTFGSPGSRDIALSLGSVRGLDGLTGILRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRALMRRLDL
Ga0187822_100243053	3300017994	Freshwater Sediment	MARRSTVGRLYITRIRPAQDPVDATYLLTFGSPGSRDIALSLGSVRGLDGLTGILRAGRVSTGEIEKAWRVLAVETTHQVPNVALTRALMRRLDL
Ga0184610_10683331	3300017997	Groundwater Sediment	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGPPSTAEIALNLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVEFRHQIPNVTLTRALIQLLNL
Ga0184604_100204351	3300018000	Groundwater Sediment	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQISNITLTRAVIRLLNF
Ga0184605_101531161	3300018027	Groundwater Sediment	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNITLTRAVIRLLNF
Ga0184608_104122211	3300018028	Groundwater Sediment	MARRSAVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALSLGSIRGLDGLTDVLRAGRVPVNEIEKAWRVLAVDTTHQIPNVTLTRAVIRLLNL
Ga0184638_11283911	3300018052	Groundwater Sediment	MARRRGVGRLYIVRLRPAADPVNAEYLLSFGSPSTAEVALNLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVEFRHLIPNVTLTPALIRLLNL
Ga0184626_101010161	3300018053	Groundwater Sediment	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPVKEIEKAWRVLAVEFRHQIPNVTLTRALIQLLNL
Ga0184621_100672312	3300018054	Groundwater Sediment	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPSITLTRAVIRLLNF
Ga0184632_100980832	3300018075	Groundwater Sediment	MARRRGVGRLYIVRLRPAADPVNAEYLLSFGSPSTAEVALNLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVEFRHLIPSVTLTPALIRLLNL
Ga0184632_103349841	3300018075	Groundwater Sediment	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPVDEIEKAWRVLAVELRHQIPNVTLTHALIRLLNL
Ga0184609_100427382	3300018076	Groundwater Sediment	MARRSSVGRLYIVRLRPATDPVNARYLLTFGSRSTDEIALNLGSVRGLDGVTDVLRAGRVPVDEIEKAWRVLAVELRHQIPNVTLTHALIRLLNL
Ga0184612_100432365	3300018078	Groundwater Sediment	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGPPSTAEIALNLGSVRGLDGLTDVLRAGRVPVKEIEKAWRVLAVEFRHQIPNVTLTRALIQLLNL
Ga0190265_101212164	3300018422	Soil	MARRRNAGRLYIMRLRPATDPVTAEYLLTFGSRSTAEIALNLGSVRGLDGLTDVLRAGRVPVGEIEKAWRVLAVEITHQIPNVTLTRAVIQLLNL
Ga0190272_100780054	3300018429	Soil	MARRTSIGRLYIVRLRPATDPVNAEYLLTFGSPSAAETALNLGSVRGLDGLTDVLRAGRVPLGEIEKAWRVLAVEFRHQVPNVTLTRALIRLLNL
Ga0190272_105584141	3300018429	Soil	MARRSGVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALSLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVDTTHQIPNVTLTRAVIRLLNL
Ga0190272_131509651	3300018429	Soil	MARRSSVGRLYIVRFRPATDPVSAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGRVPVREIEKAWRVLAVEFRHQVPNVTLTRALIQLLNL
Ga0187892_1000392922	3300019458	Bio-Ooze	MLIAMARRPAVGRLYITRLRPAVDPVSAEYLLTFGSPARSEVALLLGSVRGLDSLTAVLRAARVPVDEIERAWRVLAVDTSHEIASATLTRAVIRVLDL
Ga0193739_10141471	3300020003	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSAAEIALSLGSVRGLDGLTDVLRAGRVPVNEIEKAWRVLAVDTTHQISNVTLTRAVIRVLNL
Ga0193739_11559351	3300020003	Soil	MARRRGVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPVNEIEKAWRVLAVEFRHLIPNVTLTPALIRLLNL
Ga0193735_11379251	3300020006	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPINEIERAWRVLAVDITHQISNITLTRAVIRLLNF
Ga0179594_104159961	3300020170	Vadose Zone Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNVTLTRAVIRLLNF
Ga0210403_102389782	3300020580	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTYGAPATTEIALNLGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEITHQIPNVTLTRAVIRLLNL
Ga0210378_103305371	3300021073	Groundwater Sediment	MARRSSVGRLYIVRLRPATDPVNARYLLTFGSRSTDEIALNLGSVRGLDGVTDVLRAGRVPVDEIEKAWRVLAVELRHQIPNVTLTHALIRL
Ga0210404_102082903	3300021088	Soil	GRLYIVRLRPAVDPVNAEYLLTYGAPATTEIALNLGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEITHQIPNVTLTRAVIRLLNL
Ga0210405_103598921	3300021171	Soil	PQMARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPVSEIEKAWRVLAVETMHQIPNVMLTRALLRLLNL
Ga0210386_115425532	3300021406	Soil	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPVSEIEKAWRVLAVETMHQIPNVMLTRALLRLLNL
Ga0210384_100596255	3300021432	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPTTAEIALHFGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEIMHQIPNVTLTSAVIRRLNL
Ga0193737_10575951	3300021972	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITHQIPSITLTRAVIRLLNF
Ga0242654_100268151	3300022726	Soil	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETMHQIPNVMLTRALLRL
Ga0247793_10061723	3300023066	Soil	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGL
Ga0207685_108191161	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPVSEIEKAWRVLAVETMHQIPNVMLTRALLR
Ga0207684_100050072	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVSEIEKAWRVLAVDIMHQVPGIRLTRALIRLLNL
Ga0207684_102684213	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSSVGRLYIRRLRSAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL
Ga0207684_104445622	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSSVGRLYIRRLRPAVDPVSAEYLLTFGSPKTSEIALNLGTVRGLDGLTTVLRAGRVSLSEIETAWRVLAVEITHQIPNVMLTRAVIQLLNL
Ga0207707_103424413	3300025912	Corn Rhizosphere	MARRSGVGRMYITRLRPAVDPVGAEYLLTFGSGRSSEIALNLGSVKGLDTLTDIFRAGHVPVAEIERAWRVLATE
Ga0207693_102664352	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MARRSRLGRLRVTRVRPAVDPVSAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL
Ga0208285_10037313	3300026005	Rice Paddy Soil	MASGTRLASPMARRSTAGRLYITRLRPAQDPVGATYLLTFGSAGSREIALSLGSVRGLDGLTEVLRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRAMMRRLDL
Ga0209438_11391771	3300026285	Grasslands Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL
Ga0257173_10491381	3300026360	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGGVPVNEIEKAWRVLAVDIMHQIPGIRLTRAL
Ga0257179_10175961	3300026371	Soil	MARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIKHQIPDVRLTRALIRLLNL
Ga0257172_10161203	3300026482	Soil	MARRSSVGRLYIRRLRPAVDPVNAEYLLTFGSPTTSEIALNLGTVRGLDGLTSVLRAGRVSLSAIETAWRVLAVEITHQIPNVTLTRAVIQLLNL
Ga0257168_10030284	3300026514	Soil	SMARRSSVGRLYIVRLRPAVDPVNAEYLLTFGSPSTAEIALNLGSVHGLDGLTDVLRAGRVPVNEIEKAWRVLAVDIMHQIPGIRLTRALIRLLNL
Ga0257168_10772252	3300026514	Soil	MARRSSVGRLYIRRLRPAVDPVNAEYLLSFGSPRTSEIALNLGTVRGLDGLITVFRAGRVSLNEIETAWRVLAVEITHQIPNVMLTRAGIQLLNL
Ga0256867_100187523	3300026535	Soil	MARRSGVGRLYIVRLRPAADPVSAEYLLTFGSPSAAEIALNLGSVRGLDVLTDVLRAGRVPVSEIEKAWRVLAVDFRHQIPNVTLTRALIRLLNL
Ga0207441_1044562	3300026793	Soil	PGGPHGYATSMARRSAMGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGL
Ga0209982_10176781	3300027552	Arabidopsis Thaliana Rhizosphere	SMARRSAMGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGL
Ga0210002_10189523	3300027617	Arabidopsis Thaliana Rhizosphere	MGRLYITRLRPAVDPVRAEYLLTFGSPITSEVNLNLGSVRGLDTLTDLLRAARVPIGEIERAWSALVSDTVHEIAGVTLTPAAIRILGLSTTAMTK
Ga0209217_10752533	3300027651	Forest Soil	MARRSRLGRLRVTRIRPAVDPVNAEYLVTFGSSATGDITLNLGSVYGLDGLTDVLRAGRVPLSEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL
Ga0209180_100185716	3300027846	Vadose Zone Soil	MARRSSVGRLYIVRFRPAVDPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGRVPVKEIEKAWRVLAVEFRHQIPNVMLTRALIQLLNL
Ga0307302_104796951	3300028814	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITHQIPSIT
Ga0307296_105351961	3300028819	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSSAEIALDLGSVRGLDGLTDVLRAGYVPVNEIERAWRVLAVDITH
Ga0307312_103007752	3300028828	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSSAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDLTHQIQSMTLTRAVIRLLNF
Ga0307308_104699572	3300028884	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEVALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDLTHQIQSMTLTRAVIRLLNF
Ga0307501_100881492	3300031152	Soil	MAGRSSVGRLYIVRLRPAADPVNAEYLLTFGSPSTAEIALNLGSVRGLDGLTDVLRAGHVPVNEIERAWRVLAVDITHQIPNITLTRAVIRLLNF
(restricted) Ga0255310_100581721	3300031197	Sandy Soil	ITRIRPAQDPVDATYLLTFGSPGSRDIALSLGSVRGLDGLTGVLRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRALMRRLDL
Ga0299913_101811753	3300031229	Soil	MARRSGVGRLYIVRLHPAADPVSAEYLLTFGSPSAAEIALNLGSVRGLDVLTDVLRAGRVPVSEIEKAWRVLAVDFRHQIPNVTLTRALIRLLNL
(restricted) Ga0255312_10543541	3300031248	Sandy Soil	PAQDPVDATYLLTFGSPGSRDIALSLGSVRGLDGLTGVLRAGRVPTGEIEKAWRVLAVETTHQVPNVALTRALMRRLDL
Ga0310813_101155534	3300031716	Soil	MARRSTTGRLYITRLRPAQDPVNATYLLTFGSPGSRDIALSLGSVRGLDGLTEVLRAGRVATGEIEKAWRVLAVETTHQVPNVALTRAMMRRLDL
Ga0307469_103821742	3300031720	Hardwood Forest Soil	MGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGVTLTPAVIRLLGL
Ga0307469_113817592	3300031720	Hardwood Forest Soil	VDPVNAEYLLTYGAPATTEIALNLGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEITHQIPNVALTRAVIRLLNL
Ga0310884_105408682	3300031944	Soil	MASGTRLASPMARRSTAGRLYITRLRPAQDPVGATYLLTFGSAGSREIALSLGSVRGLDGLTEVLRAGRVPTGEIEKAWRVLAVETTHQVPSVALTRAMMRRLDL
Ga0307471_1000542483	3300032180	Hardwood Forest Soil	MALCCFAMARRSSVGRLYIVRLRPVVDPVNAEYLLTYGAPATTEIALNLGSVRGLDELTDVLRAGRVPVSEIEKAWRVLAVEITHQIPNVTLTRAVIRLLNL
Ga0307471_1008882381	3300032180	Hardwood Forest Soil	RSRLGRLRVTRIRPAVDPVNAEYLVTFGSSGTGDITLNLGSIHGLDGLTDVLRAGRVPISEIEKAWRVLAVETTHQIPNVMLTRALLRLLNL
Ga0307471_1024074541	3300032180	Hardwood Forest Soil	SRGPPPGLSRRAPRVYATPMARRLAMGRLYITRLRPAVDPVRAEYLLIFGSPTTAEVNLNLGSVRGLDTLTEVLRAARVPLGEIERAWSALVNDTVHEITGVTLTPAVIRLLGL
Ga0310812_105803762	3300032421	Soil	MARRSTTGRLYITRLRPAQDPVNATYLLTFGSPGSRDIALSLGSVRGLDGLTEVLRAGRVATGEIEKAWRVLAVETTHQVPN
Ga0316628_1015064431	3300033513	Soil	MARRSTVGRLYITRLRPAQDPVNATYFLTFGSPGTREVALSLGSVRGLDGLTDVLRAGRVPTGEIEKAWRVLAVETTHQVPNVTLTRAMMRRLDL
Ga0370495_0127299_440_727	3300034257	Untreated Peat Soil	MARSRAVGRLYIVRFRPAADPVNAEYLLTFGSPSTAEATLNLGSVLGLDGLTDVLRAGRVPVNEIEKAWRVLAVEYRHLIPNVTLTPALLRLLNT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters