Metagenome / Metatranscriptome Family F058879

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058879
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	70 residues
Representative Sequence	RISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD
Number of Associated Samples	101
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.49 %
% of genes near scaffold ends (potentially truncated)	97.01 %
% of genes from short scaffolds (< 2000 bps)	85.82 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.507 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.597 % of family members)
Environment Ontology (ENVO)	Unclassified (46.269 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.746 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 38.95% Coil/Unstructured: 61.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF08818	DUF1801	6.72
PF07883	Cupin_2	4.48
PF07992	Pyr_redox_2	2.24
PF14534	DUF4440	2.24
PF12867	DinB_2	2.24
PF00072	Response_reg	1.49
PF00989	PAS	1.49
PF01979	Amidohydro_1	1.49
PF13489	Methyltransf_23	1.49
PF00144	Beta-lactamase	1.49
PF02517	Rce1-like	1.49
PF00884	Sulfatase	1.49
PF09832	DUF2059	1.49
PF04237	YjbR	1.49
PF00501	AMP-binding	0.75
PF00731	AIRC	0.75
PF00903	Glyoxalase	0.75
PF01546	Peptidase_M20	0.75
PF04542	Sigma70_r2	0.75
PF12796	Ank_2	0.75
PF13354	Beta-lactamase2	0.75
PF06445	GyrI-like	0.75
PF12146	Hydrolase_4	0.75
PF14031	D-ser_dehydrat	0.75
PF04794	YdjC	0.75
PF03372	Exo_endo_phos	0.75
PF00248	Aldo_ket_red	0.75
PF02321	OEP	0.75
PF13649	Methyltransf_25	0.75
PF01872	RibD_C	0.75
PF00753	Lactamase_B	0.75
PF07730	HisKA_3	0.75
PF08447	PAS_3	0.75
PF04402	SIMPL	0.75
PF01370	Epimerase	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	6.72
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	6.72
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	6.72
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.49
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.49
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.49
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.49
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	1.49
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.49
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.49
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.75
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.75
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.75
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.75
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.75
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	0.75
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	0.75
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	0.75
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	0.75
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.75
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.75
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.75
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.75
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.51 %
Unclassified	root	N/A	1.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.51 %
Unclassified	root	N/A	1.49 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.51 %
Unclassified	root	N/A	1.49 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	54.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.49 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.49 %
Unclassified	root	N/A	1.49 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	52.24 %
Unclassified	root	N/A	1.49 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.75 %
Candidatus Eremiobacterota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota	0.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	41.04 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.49 %
Unclassified	root	N/A	1.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Chloroflexi incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %
Candidatus Eremiobacteriia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	39.55 %
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	1.49 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.49 %
Unclassified	root	N/A	1.49 %
Candidatus Eremiobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales	0.75 %
Candidatus Chlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	39.55 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.49 %
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	1.49 %
Unclassified	root	N/A	1.49 %
Candidatus Eremiobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales → Candidatus Eremiobacteraceae	0.75 %
Candidatus Chlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	39.55 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.49 %
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	1.49 %
Unclassified	root	N/A	1.49 %
Candidatus Eremiobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales → Candidatus Eremiobacteraceae → Candidatus Eremiobacter	0.75 %
Candidatus Chlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	39.55 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.49 %
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	1.49 %
Unclassified	root	N/A	1.49 %
unclassified Candidatus Eremiobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales → Candidatus Eremiobacteraceae → Candidatus Eremiobacter → unclassified Candidatus Eremiobacter	0.75 %
Candidatus Chlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	39.55 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.49 %
Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	1.49 %
Unclassified	root	N/A	1.49 %
Candidatus Eremiobacter sp. RRmetagenome_bin22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales → Candidatus Eremiobacteraceae → Candidatus Eremiobacter → unclassified Candidatus Eremiobacter → Candidatus Eremiobacter sp. RRmetagenome_bin22	0.75 %
Candidatus Chlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	0.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.75 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10107309	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	816	Open in IMG/M
3300002562\|JGI25382J37095_10128695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	853	Open in IMG/M
3300002562\|JGI25382J37095_10209466	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	588	Open in IMG/M
3300002908\|JGI25382J43887_10125033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → Candidatus Chlorothrix	1333	Open in IMG/M
3300002911\|JGI25390J43892_10011624	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300002916\|JGI25389J43894_1077372	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300004808\|Ga0062381_10353535	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300005171\|Ga0066677_10344489	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	854	Open in IMG/M
3300005171\|Ga0066677_10428316	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	757	Open in IMG/M
3300005172\|Ga0066683_10150769	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300005172\|Ga0066683_10698508	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	602	Open in IMG/M
3300005176\|Ga0066679_10494886	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005180\|Ga0066685_10075663	All Organisms → cellular organisms → Bacteria	2213	Open in IMG/M
3300005184\|Ga0066671_10392819	All Organisms → cellular organisms → Bacteria → FCB group	887	Open in IMG/M
3300005187\|Ga0066675_10460486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	946	Open in IMG/M
3300005444\|Ga0070694_100216857	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300005445\|Ga0070708_100031393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4597	Open in IMG/M
3300005445\|Ga0070708_101992363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300005446\|Ga0066686_10005914	All Organisms → cellular organisms → Bacteria	5918	Open in IMG/M
3300005446\|Ga0066686_10688466	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	691	Open in IMG/M
3300005446\|Ga0066686_10814004	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005446\|Ga0066686_11098030	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	511	Open in IMG/M
3300005450\|Ga0066682_10083299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1989	Open in IMG/M
3300005450\|Ga0066682_10116127	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1690	Open in IMG/M
3300005536\|Ga0070697_100485821	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1079	Open in IMG/M
3300005549\|Ga0070704_100581483	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300005559\|Ga0066700_10685374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	705	Open in IMG/M
3300005598\|Ga0066706_10847739	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	717	Open in IMG/M
3300006034\|Ga0066656_10415050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	872	Open in IMG/M
3300006791\|Ga0066653_10205887	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300006794\|Ga0066658_10527807	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	642	Open in IMG/M
3300006796\|Ga0066665_10430300	All Organisms → cellular organisms → Bacteria → FCB group	1090	Open in IMG/M
3300006796\|Ga0066665_11133033	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	596	Open in IMG/M
3300006797\|Ga0066659_10868374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	752	Open in IMG/M
3300006845\|Ga0075421_100564651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1343	Open in IMG/M
3300006852\|Ga0075433_10474294	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300006854\|Ga0075425_103101664	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300006854\|Ga0075425_103101665	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300006871\|Ga0075434_100099580	All Organisms → cellular organisms → Bacteria	2912	Open in IMG/M
3300007076\|Ga0075435_100596769	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300007076\|Ga0075435_101957782	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300007255\|Ga0099791_10186285	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	976	Open in IMG/M
3300007255\|Ga0099791_10576064	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300007265\|Ga0099794_10530695	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300009012\|Ga0066710_100093593	All Organisms → cellular organisms → Bacteria	3984	Open in IMG/M
3300009012\|Ga0066710_100637934	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1619	Open in IMG/M
3300009089\|Ga0099828_10627851	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300009089\|Ga0099828_11993670	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300009137\|Ga0066709_100985033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → Candidatus Eremiobacteriia → Candidatus Eremiobacterales → Candidatus Eremiobacteraceae → Candidatus Eremiobacter → unclassified Candidatus Eremiobacter → Candidatus Eremiobacter sp. RRmetagenome_bin22	1233	Open in IMG/M
3300009137\|Ga0066709_102739196	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300009806\|Ga0105081_1031573	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300009819\|Ga0105087_1061365	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	635	Open in IMG/M
3300010139\|Ga0127464_1143162	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	666	Open in IMG/M
3300010301\|Ga0134070_10445070	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	518	Open in IMG/M
3300010304\|Ga0134088_10085734	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1474	Open in IMG/M
3300010320\|Ga0134109_10003055	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4218	Open in IMG/M
3300010320\|Ga0134109_10171043	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300010322\|Ga0134084_10020170	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1783	Open in IMG/M
3300010322\|Ga0134084_10458411	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	509	Open in IMG/M
3300010326\|Ga0134065_10000724	All Organisms → cellular organisms → Bacteria	7182	Open in IMG/M
3300010329\|Ga0134111_10233750	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	751	Open in IMG/M
3300010333\|Ga0134080_10582847	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	542	Open in IMG/M
3300010333\|Ga0134080_10597459	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	536	Open in IMG/M
3300010336\|Ga0134071_10716330	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	530	Open in IMG/M
3300010337\|Ga0134062_10052024	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1669	Open in IMG/M
3300010337\|Ga0134062_10401129	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	671	Open in IMG/M
3300011270\|Ga0137391_10092850	All Organisms → cellular organisms → Bacteria	2610	Open in IMG/M
3300011430\|Ga0137423_1199439	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300011430\|Ga0137423_1259447	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012039\|Ga0137421_1131624	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300012199\|Ga0137383_10075074	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2440	Open in IMG/M
3300012200\|Ga0137382_10128167	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300012200\|Ga0137382_10207480	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300012200\|Ga0137382_10408076	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	958	Open in IMG/M
3300012201\|Ga0137365_10033876	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3915	Open in IMG/M
3300012201\|Ga0137365_10542342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	854	Open in IMG/M
3300012203\|Ga0137399_11274842	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300012203\|Ga0137399_11466829	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300012204\|Ga0137374_10038003	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5139	Open in IMG/M
3300012205\|Ga0137362_11379588	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300012206\|Ga0137380_10101621	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300012206\|Ga0137380_11011641	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	710	Open in IMG/M
3300012208\|Ga0137376_10441168	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300012210\|Ga0137378_11550374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	572	Open in IMG/M
3300012211\|Ga0137377_10057382	All Organisms → cellular organisms → Bacteria	3613	Open in IMG/M
3300012211\|Ga0137377_10062783	All Organisms → cellular organisms → Bacteria	3463	Open in IMG/M
3300012211\|Ga0137377_10615715	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1022	Open in IMG/M
3300012211\|Ga0137377_10649213	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300012211\|Ga0137377_11931332	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300012353\|Ga0137367_11084533	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012357\|Ga0137384_11009492	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	669	Open in IMG/M
3300012360\|Ga0137375_10447504	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300012363\|Ga0137390_10058241	All Organisms → cellular organisms → Bacteria	3761	Open in IMG/M
3300012363\|Ga0137390_11042681	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300012582\|Ga0137358_10289652	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300012923\|Ga0137359_10019240	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5779	Open in IMG/M
3300012925\|Ga0137419_10614171	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300012927\|Ga0137416_11579571	Not Available	597	Open in IMG/M
3300012976\|Ga0134076_10562405	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	528	Open in IMG/M
3300014157\|Ga0134078_10116200	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1018	Open in IMG/M
3300015356\|Ga0134073_10066612	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1001	Open in IMG/M
3300018431\|Ga0066655_10066657	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1915	Open in IMG/M
3300018482\|Ga0066669_11255912	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300019997\|Ga0193711_1008480	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300024330\|Ga0137417_1458308	Not Available	1243	Open in IMG/M
3300025910\|Ga0207684_10248540	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1535	Open in IMG/M
3300026298\|Ga0209236_1054788	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300026301\|Ga0209238_1231147	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	546	Open in IMG/M
3300026313\|Ga0209761_1003813	All Organisms → cellular organisms → Bacteria	9974	Open in IMG/M
3300026314\|Ga0209268_1004586	All Organisms → cellular organisms → Bacteria	6201	Open in IMG/M
3300026315\|Ga0209686_1125856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	843	Open in IMG/M
3300026316\|Ga0209155_1262023	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	535	Open in IMG/M
3300026324\|Ga0209470_1189318	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	881	Open in IMG/M
3300026324\|Ga0209470_1214552	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	800	Open in IMG/M
3300026324\|Ga0209470_1304232	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	589	Open in IMG/M
3300026329\|Ga0209375_1172645	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	872	Open in IMG/M
3300026333\|Ga0209158_1178598	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	762	Open in IMG/M
3300026335\|Ga0209804_1339951	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300026343\|Ga0209159_1149905	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300026538\|Ga0209056_10427838	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	783	Open in IMG/M
3300026542\|Ga0209805_1394805	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium RIFCSPLOWO2_12_FULL_68_9	532	Open in IMG/M
3300026557\|Ga0179587_11056098	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300027643\|Ga0209076_1141512	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300027655\|Ga0209388_1071507	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	999	Open in IMG/M
3300027765\|Ga0209073_10449082	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300027775\|Ga0209177_10082656	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	984	Open in IMG/M
3300027882\|Ga0209590_10403652	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	883	Open in IMG/M
3300027903\|Ga0209488_10987932	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300028536\|Ga0137415_10488644	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1038	Open in IMG/M
3300031152\|Ga0307501_10168729	All Organisms → cellular organisms → Bacteria → FCB group	606	Open in IMG/M
3300031720\|Ga0307469_10262313	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300031820\|Ga0307473_10099020	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300031820\|Ga0307473_11368084	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300032180\|Ga0307471_101531040	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.78%
Host-Associated	Host-Associated	5.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.79%
Plants	Host-Associated → Plants	5.22%
Aquatic	Environmental → Aquatic	2.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.22%
Sediment	Environmental → Aquatic → Sediment	2.24%
Freshwater	Environmental → Aquatic → Freshwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.24%
Sand	Environmental → Terrestrial → Soil → Sand	1.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.49%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.49%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	12.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.49%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.49%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300012039	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_101073092	3300002558	Grasslands Soil	VGCEDARIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
JGI25382J37095_101286952	3300002562	Grasslands Soil	LRCELENVGMVTIDGQFTSRSVTSRLDAPVLNALITITNTRGETLFSARESFYWHAPD*
JGI25382J37095_102094661	3300002562	Grasslands Soil	QPFVTFARTGTRDEVGCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
JGI25382J43887_101250331	3300002908	Grasslands Soil	RTGTRDEVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
JGI25390J43892_100116243	3300002911	Grasslands Soil	TGTRDEVGCADARISPASVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
JGI25389J43894_10773722	3300002916	Grasslands Soil	GCADARISPASVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
Ga0062381_103535351	3300004808	Wetland Sediment	PEPYLTFSRTGTRQEAGCADARIGRDAVHLRCELDRVGMVTIEGRFTSAFITSRLDTPVLSALITITNTRGETLYRARESFYWHAPD*
Ga0066677_103444892	3300005171	Soil	RCEFERVGIVVTIDGQFPSRSVTSHLDAQVLNALITVTNTRGEALFRARESFYWHAPD*
Ga0066677_104283162	3300005171	Soil	DARIGQDAVHLRCELDRVGMVTIDGRFTSRFVTSRLDTPVLSALITITNTRGETLYQARESFYWHTPD*
Ga0066683_101507694	3300005172	Soil	GCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0066683_106985082	3300005172	Soil	CEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHTPD*
Ga0066679_104948861	3300005176	Soil	ARISPVAAQLRCEFERVGIVVTIEGQFTSRSVTSRLDAQVLSALITVTNTRGEALFRARESFYWHAPD*
Ga0066685_100756634	3300005180	Soil	HLRCEFERVGIVVTIEGQFPSRTVTSRLDAQVLNAWVTVTNTRGETVFRARESFYWHTPD
Ga0066671_103928191	3300005184	Soil	RDEVGCADARISPVAAHLRCEFERVGIVVTIEGQFTSRSVTSRLDAQVLSALITVTNTRGEALFRARESFYWHAPD*
Ga0066675_104604862	3300005187	Soil	DEVGCADARISPVAAHLRCEFERVGIVVTIDGQFPSRSVTSRLDAQVLNALITVTNTRGEALFRARESFYWHAPD*
Ga0070694_1002168573	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ALAAHLRCEFERVGIVVTIDGQFPQRSVTSRLDAPVLNAWITITNTRGETVFRARESFLWHTPD*
Ga0070708_1000313931	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	HLRCEFERVGIVVSIEGQFPQRSVTSRLDAPVLNATITVTNTRGETVFRARESFLWHTPD
Ga0070708_1019923632	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PFVTFSRPGIRDEVGCADARISPAAVRLRCEFERVGIVVTIDGQFPSRSVTSRLDAPVLNAWITITNTRGETVFRARESFLWHTPD*
Ga0066686_100059141	3300005446	Soil	DARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHEPD*
Ga0066686_106884663	3300005446	Soil	DARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHTPD*
Ga0066686_108140041	3300005446	Soil	DARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0066686_110980301	3300005446	Soil	DARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFHARESFYWHAPD*
Ga0066682_100832992	3300005450	Soil	PAAVHLRCEFERVGMVTIDGQFPSRSVTSSLDAPVLNAMITITNTRGETLFRARESFYWHAPD*
Ga0066682_101161274	3300005450	Soil	AVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARESFYWHEPD*
Ga0070697_1004858212	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AAHLRCEFERVGIVVSIEGQFPQRSVTSRLDAPVLNATITVTNTRGETVFRARESFLWHTPD*
Ga0070704_1005814833	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AAHLRCEFERVGIVVTIDGQFPQRSVTSRLDAPVLNAWITITNTRGETVFRARESFLWHTPD*
Ga0066700_106853742	3300005559	Soil	EPFVTFSRIGTRQEVGCKDARIGPDAVYLRCEFERVGVVTIDGRFPLRSVTSRLDAPVLNALVTFTNTRGETLFRARESFYWHAPD*
Ga0066706_108477391	3300005598	Soil	VGCEDARIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0066656_104150503	3300006034	Soil	AVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHTPD*
Ga0066653_102058873	3300006791	Soil	RDAVRLRCEFERVGVVTIDGRFTSRFVTSQLDAPVLSALITVTNTRGEVLYRARDSFRWHQPE*
Ga0066658_105278072	3300006794	Soil	HLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0066665_104303002	3300006796	Soil	AVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0066665_111330332	3300006796	Soil	CADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHAPD*
Ga0066659_108683741	3300006797	Soil	DARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDALVLDAMVTVTNTRGETLFRARESFYWHEPD*
Ga0075421_1005646511	3300006845	Populus Rhizosphere	CQEARIGRDAVRLRCELERVGMVTIEGRFPSRYVTNRLDTAVLSALITVTNTRGETIYRARDSFRWHEPD*
Ga0075433_104742942	3300006852	Populus Rhizosphere	EVGCADARISPAAVHLRCEIENAGLVATIDGQFTLRTATSRLDAPVLNALVTMTNTRGEVLYSARQSFYWHEPD*
Ga0075425_1031016641	3300006854	Populus Rhizosphere	FSRPGIRDEVGCADARITPTAAHLRCEFERVGIVVSIEGQFPQRSVTSRLDAPVLNATITVTNTRGETVFRARESFLWHTPD*
Ga0075425_1031016651	3300006854	Populus Rhizosphere	FSRPGIRDEVGCADARITPTAAHLRCEFERVGIVVSIEGQFPQRSVTSHLDAPVLNATITVTNTRGETVFRARESFLWHTPD*
Ga0075434_1000995801	3300006871	Populus Rhizosphere	TRQEVGCADARISPAAVHLRCEIENAGLVATIDGQFTLRTATSRLDAPVLNALVTMTNTRGEVLYSARQSFYWHEPD*
Ga0075435_1005967693	3300007076	Populus Rhizosphere	AAHLRCEFERVGIVVTIDGQFPQRSVTSHLDAPVLNATITVTNTRGETVFRARESFLWHTPD*
Ga0075435_1019577823	3300007076	Populus Rhizosphere	VTFSRTGTREQVGCEDARISQLTLHLRCELKSARMATLMVTTIDGQFTSRYATSRLDAPVLNAFITITNPRGEVLYRARESFYWHTPD*
Ga0099791_101862853	3300007255	Vadose Zone Soil	EVGCADARISPAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNAVVTFTNTRGETLFRARESFYWHAPD*
Ga0099791_105760641	3300007255	Vadose Zone Soil	EVGCADARISPAAVHLRCEFERVGVVTIDGQFPRRSVTSRLDAPVLDAVVTMTNTRGETLFRARQPFYWHTPD*
Ga0099794_105306952	3300007265	Vadose Zone Soil	RISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLNAMVTITNTRGETLFRARQPFYWHTPD*
Ga0066710_1000935939	3300009012	Grasslands Soil	ADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVSNTSGETLFRARESFYWHAPD
Ga0066710_1006379342	3300009012	Grasslands Soil	AVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD
Ga0099828_106278512	3300009089	Vadose Zone Soil	AAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHAPD*
Ga0099828_119936702	3300009089	Vadose Zone Soil	AGCADARISPAAVHLRCELERVGMVTIDGQFPSRSVTSRLDAPVLNALITITNTRGETLFRARESFYWHSPD*
Ga0066709_1009850332	3300009137	Grasslands Soil	AVHLRCEFERVGIVTIDGRFTSRFITGRLDTPVLSALITITNTRGETLYRAPESFYWHAPD*
Ga0066709_1027391961	3300009137	Grasslands Soil	VACADARISPAAVHMRCEFERVGTVTIEGQFPSRSVTSSLDAPVLNALVTFTNTRGETLFGARESFYWHAPD*
Ga0105081_10315733	3300009806	Groundwater Sand	RIGTREEAGCAEARIGADAVRLRCELYRVGMVTIEGRFPSRFVTSRLDAPVLSALITVTNTRGEVLYRARDSFRWHAPD*
Ga0105087_10613653	3300009819	Groundwater Sand	IGTRQEAGCADARIGRDAVHLRCELDRVGMVTIDGRFSSRFVTSRLDAPVLSALITITNTRGEILYRARDSFRWHAPD*
Ga0127464_11431621	3300010139	Grasslands Soil	RIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0134070_104450701	3300010301	Grasslands Soil	GCKDARIGPDAVYLRCEFERVGVVTIDGRFPLRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD*
Ga0134088_100857342	3300010304	Grasslands Soil	FARTGTRDEVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD*
Ga0134109_100030551	3300010320	Grasslands Soil	TFSRIGTRQEVGCEDARIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0134109_101710431	3300010320	Grasslands Soil	SPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTMSNTRGETLFSARESFYWHAPD*
Ga0134084_100201701	3300010322	Grasslands Soil	FSRIGTRQEVGCEDARIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0134084_104584111	3300010322	Grasslands Soil	RISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0134065_100007241	3300010326	Grasslands Soil	RIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0134111_102337501	3300010329	Grasslands Soil	DARISPAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNAVVTLTNTRGETLFRARESFYWHEPD*
Ga0134080_105828471	3300010333	Grasslands Soil	RQEVECADARISPAAVHLRCEFERVGVVAIDGQFPSRSVTSSLDAPVLNAMITITNTRGETLFRARESFYWHAPD*
Ga0134080_105974592	3300010333	Grasslands Soil	ADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAVVTVTNTRGETLFRARESFYWHTPD*
Ga0134071_107163301	3300010336	Grasslands Soil	EVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD*
Ga0134062_100520241	3300010337	Grasslands Soil	PEAFVTFSRPGIRDEVGCADAGISTAAVQLRCECESVGIVVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARESFYWHEPD*
Ga0134062_104011291	3300010337	Grasslands Soil	TFSRIGTRQEVGCEDARIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0137391_100928501	3300011270	Vadose Zone Soil	QPSVTFSRIGTRQEEGCEDARISPAAVHLRCELERVGMVTIDGQFTSRSVTSRLDAPVLNALITITNTRGETLFSARESFYWHAPD*
Ga0137423_11994392	3300011430	Soil	AVYLRCEFYRVGWVTIDGRFPSRFATSRLDAPVLSAVITVTNTRGETLYRARDTFRWHEPD*
Ga0137423_12594473	3300011430	Soil	AGCADARIGRDAVYLRCELYRVGMVTIDGRFNSRVVTGRLDMPALSAFITVRNTRGEVLYRARDSFRWHGPD*
Ga0137421_11316242	3300012039	Soil	RISRDAVYLRCEFYRVGWVTIDGRFPSRFATSRLDAPVLSAVITVTNTRGETLYRARDTFRWHEPD*
Ga0137383_100750741	3300012199	Vadose Zone Soil	AAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137382_101281674	3300012200	Vadose Zone Soil	AVHLRCEFERVGIAVTIEGQFPSRTVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137382_102074803	3300012200	Vadose Zone Soil	LRCEFERVGIVVSIDGQFPSRTVTSRLDAQVLNAWVTVTNTRGETLFRARESFYWHAPD*
Ga0137382_104080763	3300012200	Vadose Zone Soil	ADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137365_100338769	3300012201	Vadose Zone Soil	EVGCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137365_105423421	3300012201	Vadose Zone Soil	ISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137399_112748421	3300012203	Vadose Zone Soil	TGTRDEVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAQVLSAWITITNTRGETLFRARESFYWHTPD*
Ga0137399_114668291	3300012203	Vadose Zone Soil	GTRDEVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLDGMVTVTNTRGETLFRARQPFYWHAPE*
Ga0137374_100380031	3300012204	Vadose Zone Soil	LRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
Ga0137362_113795881	3300012205	Vadose Zone Soil	DARISPAAAHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHTPD*
Ga0137380_101016215	3300012206	Vadose Zone Soil	AVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
Ga0137380_110116411	3300012206	Vadose Zone Soil	QDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0137376_104411681	3300012208	Vadose Zone Soil	GTRDEVGCADARISPAAVHLRCEFERVGIAVTIEGQFPSRTVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137378_115503741	3300012210	Vadose Zone Soil	TFSRTGTRQEVGCADARISPAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNAVVTLTNTRGETLFRARESFYWHEPD*
Ga0137377_100573821	3300012211	Vadose Zone Soil	RCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALITITNTRGETLFRARESFYWHAPD*
Ga0137377_100627831	3300012211	Vadose Zone Soil	RCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD*
Ga0137377_106157152	3300012211	Vadose Zone Soil	FVTFSRTGTRDEVGCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137377_106492131	3300012211	Vadose Zone Soil	RCEFERVGIIVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137377_119313322	3300012211	Vadose Zone Soil	GCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137367_110845332	3300012353	Vadose Zone Soil	VYLRCELDRVGVVTIEGRFTSRFATSRLDAPVLSALITITNTRGEILYRARDSFRWHARD
Ga0137384_110094921	3300012357	Vadose Zone Soil	DARISPAAVHLRCEFERVGISVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD*
Ga0137375_104475043	3300012360	Vadose Zone Soil	AVGCGDARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQSFYWHAPD*
Ga0137390_100582413	3300012363	Vadose Zone Soil	PAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNALVTMTNTRGETLFRARESFYWHAPD*
Ga0137390_110426811	3300012363	Vadose Zone Soil	PAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNALVIMTNTRGETLFRARESFYWHAPD*
Ga0137358_102896521	3300012582	Vadose Zone Soil	HLRCEFERVGIMVSIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQPFYWHAPE
Ga0137359_1001924011	3300012923	Vadose Zone Soil	ADARISPAAVHLRCEFERVGITVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHTPD*
Ga0137419_106141712	3300012925	Vadose Zone Soil	TAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAQVLNAWVTVTNTRGETVFRARESFYWHAPD*
Ga0137416_115795711	3300012927	Vadose Zone Soil	HLRCEFERVGIVVTIDGQFPQRSVTSHLDAPVLNAWITITNTRGETVFRARESFYWHAPD
Ga0134076_105624052	3300012976	Grasslands Soil	GTRDEVGCADARIGPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD*
Ga0134078_101162003	3300014157	Grasslands Soil	SVTFSRIGTRQEVGCEDAQIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0134073_100666121	3300015356	Grasslands Soil	VTFSRIGTRQEVGCEDARIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD*
Ga0066655_100666571	3300018431	Grasslands Soil	DARIGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD
Ga0066669_112559122	3300018482	Grasslands Soil	SPVAAHLRCEFERVGIVVTIEGQFPTRSVTSRLDAPVLNAWITITNTRGETVFRARESFYWHAPD
Ga0193711_10084801	3300019997	Soil	RITPAAVHLRCEFERVGIVVTIEGQFPTRTVTSRLDAPVLNAMVTITNTRGETLFRARQPFYWHTPD
Ga0137417_14583082	3300024330	Vadose Zone Soil	ARISPAAVHLRCELERVGTVTIDGQFPSRSVTSRLDAPVLNALITITNTRGETLFRARESFYWHAPD
Ga0207684_102485401	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DARITALAAHLRCEFERVGIVVTIDGQFPQRSVTSRLDAPVLNAWITITNTRGETVFRARESFLWHAPD
Ga0209236_10547881	3300026298	Grasslands Soil	EDARIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD
Ga0209238_12311471	3300026301	Grasslands Soil	IGPDAVHLRCELDRVGMVTIDGRFTSRFVTSRLDQPVLSAWITISNTRGETLYRARDSFVWHAPD
Ga0209761_10038131	3300026313	Grasslands Soil	EDARIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHEPD
Ga0209268_10045861	3300026314	Soil	IGQDAVHLRCEFERVGVVTIDGRFTSRYVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD
Ga0209686_11258561	3300026315	Soil	PGIRDEVGCADARISPVAAYLRCEFERVGIVVTIDGQFPSRSVTSHLDAQVLNALITVTNTRGEALFRARESFYWHAPD
Ga0209155_12620232	3300026316	Soil	GCADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARESFYWHEPD
Ga0209470_11893182	3300026324	Soil	PGIRDEVGCADARITPAAAHLRCEFERVGIVVTIEGQFPSRTVTSRLDAQVLNAWVTVTNTRGETVFRARESFYWHTPD
Ga0209470_12145521	3300026324	Soil	FARTGTRDEVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD
Ga0209470_13042322	3300026324	Soil	RCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD
Ga0209375_11726452	3300026329	Soil	HLRCEFERVGMVTIDGQFPSRSVTSSLDAPVLNAMITITNTRGETLFRARESFYWHAPD
Ga0209158_11785981	3300026333	Soil	SVTFSRIGTRQEVGCEDARIGQDAVHLRCELERVGVVTIDGRFTSRFVTSSLDTPVLSALITITNTRGETLFSARESFYWHAPD
Ga0209804_13399512	3300026335	Soil	RIGSRQEVACEDARIGAAAVHLHCEFERVGTVTIEGQFPLRSVTSRLDAPVLDAWVTFANTRGETLFRARESFYWHAPD
Ga0209159_11499051	3300026343	Soil	LRCEFERVGVVTIDGRFTSRFVTSQLDAPVLSALITVTNTRGEVLYRARDSFRWHQPE
Ga0209056_104278382	3300026538	Soil	CEFERVGIVTIDGQFPSRSVTSRLDAPVLNALVTFTNTSGETLFRARESFYWHAPD
Ga0209805_13948052	3300026542	Soil	GTRQEAGCEDARIGQDAVHLRCELDRVGMVTIDGRFTSRFVTSRLDTPVLSALITITNTRGETLYQARESFYWHTPD
Ga0179587_110560981	3300026557	Vadose Zone Soil	HLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHAPD
Ga0209076_11415122	3300027643	Vadose Zone Soil	RISPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAPVLNALVTVTNTRGETLFRARESFYWHAPD
Ga0209388_10715071	3300027655	Vadose Zone Soil	ARTGTRQEVGCADARISPAAVHLRCEFERVGTVTIEGQFPSRSVTSRLDAPVLNAVVTFTNTRGETLFRARESFYWHAPD
Ga0209073_104490822	3300027765	Agricultural Soil	EFERVGLVVTIDGQFPQRSVTSRLDAPVLNATITVTNTRGETVFRARESFLWHTPD
Ga0209177_100826562	3300027775	Agricultural Soil	GIRDEVGCADARINPTTAHLRCEFERVGLVVTIDGQFPQRSVTSRLDAPVLNATITVTNTRGETVFRARESFLWHTPD
Ga0209590_104036522	3300027882	Vadose Zone Soil	DEVGCADARISPAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNALVTITNTRGETLFSARESFYWHAPD
Ga0209488_109879321	3300027903	Vadose Zone Soil	CGDARISPAAVHLRCEFERVGIMVSIEGQFPSRSVTSRLDAPVLDAMVTVTNTRGETLFRARQSFYWHAPEEAR
Ga0137415_104886441	3300028536	Vadose Zone Soil	EVGCADARISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLDGMVTVTNTRGETLFRARQPFYWHAPE
Ga0307501_101687292	3300031152	Soil	PAAVHLRCEFERVGIMVTIEGQFPSRSVTSRLDAPVLNAMVTVTNTRGETLFRARQPFYWHTPD
Ga0307469_102623131	3300031720	Hardwood Forest Soil	AVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLDAWITVTNTRGETVFRARESFLWHAPD
Ga0307473_100990201	3300031820	Hardwood Forest Soil	CADARISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLDAWITVTNTRGETVFRARESFLWHAPD
Ga0307473_113680841	3300031820	Hardwood Forest Soil	TPAAVHLRCEFERVGIVVTIEGQFPSRSVTSRLDAQVLNAWITITNTRGETVFRARDPFYWHAPD
Ga0307471_1015310402	3300032180	Hardwood Forest Soil	ARISPAAVHLRCEFERVGIVVTIEGQFPSRTVTSRLDAPVLDAWITVTNTRGETVFRARESFLWHAPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058879

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences