Metagenome / Metatranscriptome Family F059317

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059317
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	74 residues
Representative Sequence	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Number of Associated Samples	116
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.82 %
% of genes near scaffold ends (potentially truncated)	27.61 %
% of genes from short scaffolds (< 2000 bps)	72.39 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.806 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.179 % of family members)
Environment Ontology (ENVO)	Unclassified (25.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.791 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.86% β-sheet: 3.88% Coil/Unstructured: 58.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF02633	Creatininase	14.93
PF02894	GFO_IDH_MocA_C	13.43
PF02515	CoA_transf_3	4.48
PF01266	DAO	2.99
PF00496	SBP_bac_5	2.24
PF12680	SnoaL_2	2.24
PF13416	SBP_bac_8	2.24
PF00753	Lactamase_B	2.24
PF01019	G_glu_transpept	1.49
PF01547	SBP_bac_1	1.49
PF00106	adh_short	0.75
PF02627	CMD	0.75
PF00501	AMP-binding	0.75
PF01979	Amidohydro_1	0.75
PF00027	cNMP_binding	0.75
PF00528	BPD_transp_1	0.75
PF00296	Bac_luciferase	0.75
PF14534	DUF4440	0.75
PF15617	C-C_Bond_Lyase	0.75
PF04214	DUF411	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	14.93
COG0673	Predicted dehydrogenase	General function prediction only [R]	13.43
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	4.48
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.49
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.75
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.75
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.75
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.55 %
Unclassified	root	N/A	10.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.55 %
Unclassified	root	N/A	10.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.81 %
Unclassified	root	N/A	10.45 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.75 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	35.07 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	29.85 %
Unclassified	root	N/A	10.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.75 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	35.07 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.42 %
Unclassified	root	N/A	10.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	35.07 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.93 %
Unclassified	root	N/A	10.45 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.75 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	25.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.93 %
Unclassified	root	N/A	10.45 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.75 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.93 %
Unclassified	root	N/A	10.45 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.75 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.93 %
Unclassified	root	N/A	10.45 %
Xanthomonas hortorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas hortorum	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.75 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725003\|GPWSG_F5G3JLY01EDTV2	Not Available	532	Open in IMG/M
2088090015\|GPICI_8692307	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2900	Open in IMG/M
3300002122\|C687J26623_10030468	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300002245\|JGIcombinedJ26739_100193541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1923	Open in IMG/M
3300002886\|JGI25612J43240_1004544	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1885	Open in IMG/M
3300002914\|JGI25617J43924_10054883	All Organisms → cellular organisms → Bacteria → Proteobacteria	1452	Open in IMG/M
3300003324\|soilH2_10183646	All Organisms → cellular organisms → Bacteria → Proteobacteria	5995	Open in IMG/M
3300003995\|Ga0055438_10039182	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300004156\|Ga0062589_100344097	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300004479\|Ga0062595_102260635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	535	Open in IMG/M
3300005174\|Ga0066680_10819273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas hortorum	559	Open in IMG/M
3300005330\|Ga0070690_100204602	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300005330\|Ga0070690_100843983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	713	Open in IMG/M
3300005331\|Ga0070670_100060111	All Organisms → cellular organisms → Bacteria	3262	Open in IMG/M
3300005333\|Ga0070677_10293612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	823	Open in IMG/M
3300005341\|Ga0070691_10044189	All Organisms → cellular organisms → Bacteria	2112	Open in IMG/M
3300005345\|Ga0070692_10000565	All Organisms → cellular organisms → Bacteria → Proteobacteria	11582	Open in IMG/M
3300005347\|Ga0070668_101128881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	708	Open in IMG/M
3300005354\|Ga0070675_101358212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300005406\|Ga0070703_10021262	All Organisms → cellular organisms → Bacteria	1895	Open in IMG/M
3300005406\|Ga0070703_10615967	Not Available	502	Open in IMG/M
3300005439\|Ga0070711_100827000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	787	Open in IMG/M
3300005444\|Ga0070694_100001370	All Organisms → cellular organisms → Bacteria → Proteobacteria	14254	Open in IMG/M
3300005445\|Ga0070708_100104030	All Organisms → cellular organisms → Bacteria → Proteobacteria	2603	Open in IMG/M
3300005445\|Ga0070708_102092707	Not Available	523	Open in IMG/M
3300005467\|Ga0070706_101854931	Not Available	547	Open in IMG/M
3300005468\|Ga0070707_100179755	All Organisms → cellular organisms → Bacteria → Proteobacteria	2062	Open in IMG/M
3300005518\|Ga0070699_101005514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	765	Open in IMG/M
3300005526\|Ga0073909_10615932	Not Available	537	Open in IMG/M
3300005529\|Ga0070741_10005844	All Organisms → cellular organisms → Bacteria	26889	Open in IMG/M
3300005542\|Ga0070732_10219818	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300005546\|Ga0070696_100151729	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300005546\|Ga0070696_100670377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	843	Open in IMG/M
3300005549\|Ga0070704_100844168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300005586\|Ga0066691_10041013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2443	Open in IMG/M
3300005875\|Ga0075293_1015828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300005875\|Ga0075293_1026113	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300005879\|Ga0075295_1032114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300005883\|Ga0075299_1007473	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300006172\|Ga0075018_10015007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2925	Open in IMG/M
3300006358\|Ga0068871_100121307	All Organisms → cellular organisms → Bacteria → Proteobacteria	2208	Open in IMG/M
3300006358\|Ga0068871_100231169	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300006755\|Ga0079222_10036604	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300006806\|Ga0079220_10513208	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300006852\|Ga0075433_10008820	All Organisms → cellular organisms → Bacteria → Proteobacteria	8045	Open in IMG/M
3300006852\|Ga0075433_10063542	All Organisms → cellular organisms → Bacteria	3234	Open in IMG/M
3300006854\|Ga0075425_101344000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	809	Open in IMG/M
3300006914\|Ga0075436_100351427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1062	Open in IMG/M
3300007258\|Ga0099793_10233069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	887	Open in IMG/M
3300007265\|Ga0099794_10040469	All Organisms → cellular organisms → Bacteria	2216	Open in IMG/M
3300009088\|Ga0099830_10547228	Not Available	947	Open in IMG/M
3300009089\|Ga0099828_12045224	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	500	Open in IMG/M
3300009162\|Ga0075423_10373900	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1495	Open in IMG/M
3300009162\|Ga0075423_11723449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300009822\|Ga0105066_1170964	Not Available	505	Open in IMG/M
3300010400\|Ga0134122_10296027	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1387	Open in IMG/M
3300010401\|Ga0134121_10431898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1198	Open in IMG/M
3300011269\|Ga0137392_10030896	All Organisms → cellular organisms → Bacteria	3883	Open in IMG/M
3300011271\|Ga0137393_11675854	Not Available	525	Open in IMG/M
3300012202\|Ga0137363_10853613	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	773	Open in IMG/M
3300012205\|Ga0137362_10043225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3640	Open in IMG/M
3300012208\|Ga0137376_10425955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1152	Open in IMG/M
3300012361\|Ga0137360_10993170	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300012362\|Ga0137361_10809776	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	852	Open in IMG/M
3300012362\|Ga0137361_11592121	Not Available	574	Open in IMG/M
3300012896\|Ga0157303_10105574	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	690	Open in IMG/M
3300012917\|Ga0137395_10231864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1293	Open in IMG/M
3300012927\|Ga0137416_10248545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1452	Open in IMG/M
3300012931\|Ga0153915_10080650	All Organisms → cellular organisms → Bacteria → Proteobacteria	3410	Open in IMG/M
3300012931\|Ga0153915_10849853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1059	Open in IMG/M
3300012931\|Ga0153915_13205101	Not Available	531	Open in IMG/M
3300014326\|Ga0157380_10406898	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1293	Open in IMG/M
3300015077\|Ga0173483_10143113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1047	Open in IMG/M
3300017936\|Ga0187821_10004585	All Organisms → cellular organisms → Bacteria → Proteobacteria	4583	Open in IMG/M
3300017993\|Ga0187823_10146048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	743	Open in IMG/M
3300017994\|Ga0187822_10185624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300018422\|Ga0190265_10260792	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300019877\|Ga0193722_1116091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300019881\|Ga0193707_1035565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1620	Open in IMG/M
3300020070\|Ga0206356_10466032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	743	Open in IMG/M
3300020199\|Ga0179592_10189595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300021086\|Ga0179596_10733982	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300021406\|Ga0210386_11320665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	607	Open in IMG/M
3300022533\|Ga0242662_10282217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300025905\|Ga0207685_10237697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	875	Open in IMG/M
3300025906\|Ga0207699_10297807	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1125	Open in IMG/M
3300025910\|Ga0207684_10010037	All Organisms → cellular organisms → Bacteria → Proteobacteria	8342	Open in IMG/M
3300025910\|Ga0207684_10348778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1274	Open in IMG/M
3300025922\|Ga0207646_10871576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	800	Open in IMG/M
3300025926\|Ga0207659_10318697	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1282	Open in IMG/M
3300025944\|Ga0207661_10251818	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1570	Open in IMG/M
3300025986\|Ga0207658_10476231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1109	Open in IMG/M
3300026005\|Ga0208285_1002725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1092	Open in IMG/M
3300026005\|Ga0208285_1019786	Not Available	552	Open in IMG/M
3300026320\|Ga0209131_1102119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1510	Open in IMG/M
3300026335\|Ga0209804_1319250	Not Available	524	Open in IMG/M
3300026359\|Ga0257163_1019346	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1054	Open in IMG/M
3300026480\|Ga0257177_1040883	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300026482\|Ga0257172_1023738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1090	Open in IMG/M
3300026489\|Ga0257160_1102869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300026514\|Ga0257168_1038960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1029	Open in IMG/M
3300026515\|Ga0257158_1039460	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	851	Open in IMG/M
3300026535\|Ga0256867_10227318	Not Available	676	Open in IMG/M
3300026551\|Ga0209648_10017101	All Organisms → cellular organisms → Bacteria → Proteobacteria	6325	Open in IMG/M
3300026551\|Ga0209648_10384951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	935	Open in IMG/M
3300027324\|Ga0209845_1004780	All Organisms → cellular organisms → Bacteria	2335	Open in IMG/M
3300027645\|Ga0209117_1020954	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300027651\|Ga0209217_1153070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300027727\|Ga0209328_10067737	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1093	Open in IMG/M
3300027842\|Ga0209580_10155471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300027873\|Ga0209814_10011368	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3509	Open in IMG/M
3300027894\|Ga0209068_10005407	All Organisms → cellular organisms → Bacteria → Proteobacteria	6028	Open in IMG/M
3300027910\|Ga0209583_10477562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	611	Open in IMG/M
3300027952\|Ga0209889_1032101	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300028047\|Ga0209526_10017230	All Organisms → cellular organisms → Bacteria	5019	Open in IMG/M
3300028792\|Ga0307504_10187160	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300028885\|Ga0307304_10157704	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	950	Open in IMG/M
3300028889\|Ga0247827_10673025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	671	Open in IMG/M
3300030006\|Ga0299907_10092422	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300030336\|Ga0247826_10183504	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1415	Open in IMG/M
3300030620\|Ga0302046_10439957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300031229\|Ga0299913_10170500	All Organisms → cellular organisms → Bacteria	2150	Open in IMG/M
3300031720\|Ga0307469_10010018	All Organisms → cellular organisms → Bacteria	4577	Open in IMG/M
3300031720\|Ga0307469_10304507	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1314	Open in IMG/M
3300031720\|Ga0307469_10568548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300031720\|Ga0307469_11003196	Not Available	780	Open in IMG/M
3300031820\|Ga0307473_10024400	All Organisms → cellular organisms → Bacteria	2528	Open in IMG/M
3300032205\|Ga0307472_100304025	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1284	Open in IMG/M
3300033412\|Ga0310810_10000417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43885	Open in IMG/M
3300033432\|Ga0326729_1002824	All Organisms → cellular organisms → Bacteria	3532	Open in IMG/M
3300033433\|Ga0326726_10074972	All Organisms → cellular organisms → Bacteria	2989	Open in IMG/M
3300033513\|Ga0316628_100031393	All Organisms → cellular organisms → Bacteria → Proteobacteria	5210	Open in IMG/M
3300033513\|Ga0316628_100046793	All Organisms → cellular organisms → Bacteria → Proteobacteria	4447	Open in IMG/M
3300034817\|Ga0373948_0001050	All Organisms → cellular organisms → Bacteria	3725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.31%
Host-Associated	Host-Associated	12.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.85%
Plants	Host-Associated → Plants	12.69%
Aquatic	Environmental → Aquatic	7.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.19%
Freshwater	Environmental → Aquatic → Freshwater	4.48%
Sediment	Environmental → Aquatic → Sediment	2.24%
Peat	Environmental → Terrestrial → Peat	1.49%
Roots	Host-Associated → Plants → Roots	1.49%
Marine	Environmental → Aquatic → Marine	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.25%
Loam	Environmental → Terrestrial → Soil → Loam	20.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.22%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.24%
Sand	Environmental → Terrestrial → Soil → Sand	2.24%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.49%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.49%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.37%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.22%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.24%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.24%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.49%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.49%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.75%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.22%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.48%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	4.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.99%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.24%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.24%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.24%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.24%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.49%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.49%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.49%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005883	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026005	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033432	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fraction	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_02143120	2067725003	Soil	ARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP
GPICI_02828010	2088090015	Soil	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP
C687J26623_100304681	3300002122	Soil	MPTTCVSTPRALRRRPLGRALLVAAVCGLLAGCAGLPQGPTYTDAELQAICERQGGWWRGKLIAGYCEYQTASLSQAP*
JGIcombinedJ26739_1001935412	3300002245	Forest Soil	MMTTVDRTKGYARRLVLGALLAAAAGGLLSACSSMPPGPTYTEDELRVICERRGGWWRGNLVPGLCEYQTASNQAP*
JGI25612J43240_10045442	3300002886	Grasslands Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
JGI25617J43924_100548832	3300002914	Grasslands Soil	MMTVETTKSIARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEFQTASNQAP*
soilH2_101836463	3300003324	Sugarcane Root And Bulk Soil	MTTVDRTKSRTRRLVLGVLLAAAAGGLVTGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0055438_100391822	3300003995	Natural And Restored Wetlands	MATTRTTRSRAPRRLLAGVLLASGTGGLLGGCAGWPHEPTYTDAELQAICERRGGWWRGELIPGYCEYQTASSTQTP*
Ga0062589_1003440972	3300004156	Soil	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0062595_1022606351	3300004479	Soil	MTTVKTTKGYARTLVLGALLAAAAGAALSGCASMPQGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0066680_108192731	3300005174	Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0070690_1002046021	3300005330	Switchgrass Rhizosphere	ARRLVLGALLAAAAGSLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0070690_1008439832	3300005330	Switchgrass Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGTLIPG
Ga0070670_1000601114	3300005331	Switchgrass Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGNL
Ga0070677_102936122	3300005333	Miscanthus Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0070691_100441891	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	ARISRASTGEREGMTIVDTTTHMARRLVLGALLAAAGGSLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP*
Ga0070692_100005656	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYHTAFSQSP*
Ga0070668_1011288811	3300005347	Switchgrass Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIP
Ga0070675_1013582122	3300005354	Miscanthus Rhizosphere	MTTVRATKGHARRLVLGGLLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0070703_100212621	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVDSMKGAGRRLVLGALLAAAAGGLLTACSSMPIGPTYTEDELRVICERHGGWWRGRLIPGFCEYQTASIYQSP*
Ga0070703_106159671	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0070711_1008270001	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQAP*
Ga0070694_10000137012	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTIVDTTTHMARRLVLGALLAAAAGSLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP*
Ga0070708_1001040303	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKGMARRLVLGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0070708_1020927072	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GSTRISRVSTGEGMMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0070706_1018549311	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	CISRVSTGEGMMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0070707_1001797552	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKGMARRLVLGALLAATAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0070699_1010055142	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0073909_106159322	3300005526	Surface Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPARAYTQDELRVICERRGGWWRGNLIPGYCEYQTAANQAP*
Ga0070741_100058442	3300005529	Surface Soil	MTTGKATKGYARRLVLGGLLAAAAGGVLAGCASMPQGPTYTEEELKAICERRGGWWRGNLIPGFCEYQTASTQAP*
Ga0070732_102198182	3300005542	Surface Soil	MTIVDTMKPMARRVVLGALLAAAAGGLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP*
Ga0070696_1001517292	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDTIKGLARRLLLAALLAVAVGGLLSACSTMPPGPTYTDDELRVICERRGGWWRGNLIPGYCEYQTASTQTP*
Ga0070696_1006703771	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VVVTIGGPCASQEHGPESEMMTTVDRTKGYARRLVLGALLAAAAGGLLSACSSMPPGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0070704_1008441681	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASN
Ga0066691_100410133	3300005586	Soil	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0075293_10158282	3300005875	Rice Paddy Soil	MPTIERSCRRIVLTVLLGAAAGGLFAACSALPQGPTYTEEELRAACERHGGWWRGSLIPGYCEFQTANQAP*
Ga0075293_10261131	3300005875	Rice Paddy Soil	MPTIERSCRRIVLTALLGAAAGGLFAACSSLPQGPTYTEAELRAACERHGGWWRGSLIPGYCEYQSASLTQAP*
Ga0075295_10321142	3300005879	Rice Paddy Soil	MTIVDTTTHMARRLVLGALLAAAAGSLLTACSSMPPGPTYTEDELRVICERRGGWWRGNLIPGYCEYQT
Ga0075299_10074733	3300005883	Rice Paddy Soil	MPTIERSCRRIVLTVLLGAAAGGLFAACSALPQGPTYTEEELRAACERHGGWWRGSLIPGYCEFQTADQAP*
Ga0075018_100150072	3300006172	Watersheds	MTTVSTMKGAGRRLLLVALLAAAAGGLLTACSSMPVAPTYTEDELRIACQRRGGWWRGSLIAGYCEFQSASLTQSP*
Ga0068871_1001213072	3300006358	Miscanthus Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGTLIPGYCEYQTAFSQSP*
Ga0068871_1002311692	3300006358	Miscanthus Rhizosphere	MTTVETTKGYARSLVLGALLAAAAGAALSGCASMPQGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAFSQSP*
Ga0079222_100366043	3300006755	Agricultural Soil	MTTVDRTKSRARRLVLGVLLAAAAGGLVAGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTASNQSP*
Ga0079220_105132082	3300006806	Agricultural Soil	MTIVDTTTHKARRLVLGALLAAAAGGLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP*
Ga0075433_100088209	3300006852	Populus Rhizosphere	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQAP*
Ga0075433_100635421	3300006852	Populus Rhizosphere	MTTVRATKGHARRLVLGGLLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGN
Ga0075425_1013440002	3300006854	Populus Rhizosphere	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASSQAP*
Ga0075436_1003514272	3300006914	Populus Rhizosphere	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEG
Ga0099793_102330692	3300007258	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEFQTASNQAP*
Ga0099794_100404694	3300007265	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPQGPTYTEDELRVICERRGGWWRGNLIPGFCEFQTASNQAP*
Ga0099830_105472282	3300009088	Vadose Zone Soil	MVRRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEFQTASNQAP*
Ga0099828_120452241	3300009089	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPG
Ga0075423_103739001	3300009162	Populus Rhizosphere	MMTVETTKSLVRRLVLGALLAAAAGGFLSACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQA
Ga0075423_117234491	3300009162	Populus Rhizosphere	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQA
Ga0105066_11709641	3300009822	Groundwater Sand	MPIAQRLPGGAFIAVGVFALLAGCAGLPQGPTYTDAELRAICERRGGWWRGEVIAGYCEYQSASLREAP*
Ga0134122_102960272	3300010400	Terrestrial Soil	MTTMDTIKGLARRLLLAALLAVAVGGLLSACSTMPPGPTYTDDELRVICERRGGWWRGNLIPGYCEYQTASTQTP*
Ga0134121_104318982	3300010401	Terrestrial Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPGPTYTQDELRVICERRGGWWRGNLIPGLCEYQTASNQAP*
Ga0137392_100308965	3300011269	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0137393_116758541	3300011271	Vadose Zone Soil	MMTVETTKSMVRRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEFQTASNQAP*
Ga0137363_108536132	3300012202	Vadose Zone Soil	MARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEYQTAANQAP*
Ga0137362_100432252	3300012205	Vadose Zone Soil	MARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0137376_104259552	3300012208	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGLCEYQTASNQAP*
Ga0137360_109931702	3300012361	Vadose Zone Soil	MARRLVLGALLAAAAGGFLGACSSLPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0137361_108097762	3300012362	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0137361_115921212	3300012362	Vadose Zone Soil	MARRLVLGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP*
Ga0157303_101055741	3300012896	Soil	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPG
Ga0137395_102318642	3300012917	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQ
Ga0137416_102485452	3300012927	Vadose Zone Soil	MARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP*
Ga0153915_100806501	3300012931	Freshwater Wetlands	MTTVGTTKSARRRLVLGALLVAAAGGLLTACGSMPPGRTYTEDELRIICERRGGWWRGNLIPG
Ga0153915_108498532	3300012931	Freshwater Wetlands	MTTVGTTNRARRRLLLGALLVAAAGGLLTACSSMPPGPTYTEDELRIICERRGGWWRGNLIPGYCEFQSASLSQSP*
Ga0153915_132051011	3300012931	Freshwater Wetlands	MCAIKGSCLRIVLAALLSAAAGGLFAACSSLPQGPTYTEEELRAACERHGGWWRGSLIPGYCEYQLANEAP*
Ga0157380_104068981	3300014326	Switchgrass Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWRRGNLIPGYCEYQTAFSQSP*
Ga0173483_101431132	3300015077	Soil	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFS
Ga0187821_100045855	3300017936	Freshwater Sediment	MTIVDTTKHMARRLVLGALLAAGAGGFLTACSSMPPGPTYTEDELRVICERRGGWWRGNLIPGYCEYQTAANQAP
Ga0187823_101460482	3300017993	Freshwater Sediment	STGEREGMTIVDTTKPMARRVVLGLLLAAAAGDLLTACSSMPPGPTYTEDELKVICERRGGWWRGTLIPGYCEYQTAANQAP
Ga0187822_101856241	3300017994	Freshwater Sediment	REGMTIVDTTKPMARRVVLGLLLAAAAGDLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP
Ga0190265_102607921	3300018422	Soil	MRTGQVVAPRAPRRRLGGALLALAVCALLTGCAGLPQGPTYTEPELKAICERQGGWWRGNLIKDYCEYQTASAQAP
Ga0193722_11160912	3300019877	Soil	MMTVETTKSMARRLVLGALLAAAAGGLLSACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGLCEYQTASNQAP
Ga0193707_10355652	3300019881	Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGLCEYQTASNQAP
Ga0206356_104660322	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP
Ga0179592_101895952	3300020199	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Ga0179596_107339822	3300021086	Vadose Zone Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEFQTASNQAP
Ga0210386_113206651	3300021406	Soil	DHRGSTRISRVSTGEGMMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQAP
Ga0242662_102822172	3300022533	Soil	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTAS
Ga0207685_102376971	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGLCEYQTASNQAP
Ga0207699_102978071	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	GNPSPRPPVVTTGGSTRISRVSTGEGMMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Ga0207684_100100375	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVDSMKGAGRRLVLGALLAAAAGGLLTACSSMPIGPTYTEDELRVICERHGGWWRGRLIPGFCEYQTASIYQSP
Ga0207684_103487782	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKGMARRLVLGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP
Ga0207646_108715762	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVETTKGMARRLVLGALLAATAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQAP
Ga0207659_103186972	3300025926	Miscanthus Rhizosphere	MTTVRATKGHARRLVLGGLLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAFSQSP
Ga0207661_102518181	3300025944	Corn Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGHL
Ga0207658_104762312	3300025986	Switchgrass Rhizosphere	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGTLIPGYCEYQTAFSQSP
Ga0208285_10027251	3300026005	Rice Paddy Soil	MPTIERSCRRIVLTVLLGAAAGGLFAACSALPQGPTYTEEELRAACERHGGWWRGSLIPGYCEFQTANQAP
Ga0208285_10197862	3300026005	Rice Paddy Soil	MPTIERSCRRIVLTALLGAAAGGLFAACSSLPQGPTYTEAELRAACERHGGWWRGSLIPGYCEYQSASLTQAP
Ga0209131_11021191	3300026320	Grasslands Soil	TTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Ga0209804_13192501	3300026335	Soil	MMTVETTKGMARRLVLGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGNLIEGFCEFQTASSQ
Ga0257163_10193462	3300026359	Soil	TKSMARRLVLGALLAAAAGAFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGLCEYQTASNQAP
Ga0257177_10408831	3300026480	Soil	RFPASREPLSTSPGCDHWGSTRISRVSTGEGMMTVETTKSMARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Ga0257172_10237382	3300026482	Soil	MMTVETTKSMARRLVLGALLAAAAGAFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGLCEYQTASNQAP
Ga0257160_11028691	3300026489	Soil	MMTVETTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNL
Ga0257168_10389602	3300026514	Soil	MMTVETTKSMARRLVLGALLAAAAGGFFGACSSLPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTAANQAP
Ga0257158_10394602	3300026515	Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTQDELRVICERRGGWWRGNLIPNLCEYQTASNQAP
Ga0256867_102273181	3300026535	Soil	MIARTTTTRFPRRLLAGALLAAGVGGLLGGCAGLPQGPTYTDAELKAICERQGGWWRGELIAGYCEYQTASISQAP
Ga0209648_100171013	3300026551	Grasslands Soil	MMTVETTKSIARRLVLGALLAAAAGGFLGACSSLPPAPTYTQDELRVICERRGGWWRGNLIPGFCEFQTASNQAP
Ga0209648_103849512	3300026551	Grasslands Soil	MMTVETTKSMARRLVLGALLAAAAGGFFGACSSLPQGPTYTEDELRVICERRGGWWRGNLTPGFCEYQTAANQAP
Ga0209845_10047803	3300027324	Groundwater Sand	MPITQRLLGGALIAAGLCALLAGCAGLPQGPTYTDAELRAICERRGGWWRGEVIAGYCEYQTASITQAP
Ga0209117_10209544	3300027645	Forest Soil	MMTVETTKSMARRLVLGALLAAAAGAFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGLCE
Ga0209217_11530702	3300027651	Forest Soil	MTVETTKSRARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQT
Ga0209328_100677371	3300027727	Forest Soil	MMTVETTKSRARRLVLGALLAAAAGGFLGACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASN
Ga0209580_101554712	3300027842	Surface Soil	MTIVDTMKPMARRVVLGALLAAAAGGLLTACSSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP
Ga0209814_100113683	3300027873	Populus Rhizosphere	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQAP
Ga0209068_100054075	3300027894	Watersheds	MTTVSTMKGAGRRLLLVALLAAAAGGLLTACSSMPVAPTYTEDELRIACQRRGGWWRGSLIPGYCEFQSASLTQSP
Ga0209583_104775621	3300027910	Watersheds	MTTVSTMKGAGRRLLLVALLAAAAGGLLTACSSMPVAPTYTEDELRIACQRRGGWWRGSLIPGYCEFQSASLIEAP
Ga0209889_10321012	3300027952	Groundwater Sand	MPITQRLLGGALIAAGLCALLAGCAGLPQGPTYTEAELQVICERRGGWWRGALIAGYCEYQSASLREAP
Ga0209526_100172303	3300028047	Forest Soil	MMTTVDRTKGYARRLVLGALLAAAAGGLLSACSSMPPGPTYTEDELRVICERRGGWWRGNLVPGLCEYQTASNQAP
Ga0307504_101871601	3300028792	Soil	MTTVTAMKSAGRRLLVVALLAAAAGGLLSACSSMPPGPTYTEDELRVICERRGGWWRGNLIPGHCEFQSASLVQSP
Ga0307304_101577041	3300028885	Soil	MTTVNGTKGYARRLVVGALLAAAAGGVLTGCASMPQGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTASNQAP
Ga0247827_106730251	3300028889	Soil	RRLVLGALLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGTLIPGYCEYQTAFSQSP
Ga0299907_100924222	3300030006	Soil	MIARTTTTWFPRRLLAGALLAAGVGGLLGGCAGLPQGPTYTDAELKAICERQGGWWRGELIAGYCEYQTASISQAP
Ga0247826_101835042	3300030336	Soil	MTTVRATKGYARRLVLGALLAAAAGGALGGCASMPQGPTYTEAELKAICERRGGWWRGTLIPGYCEYQTAFSQSP
Ga0302046_104399573	3300030620	Soil	MIARTTTTRFPRRLLAGALLAAGVGGLLGGCAGLPQGPTYTDAELRAICERQGGWWRGELIAGYCEYQTASISQAP
Ga0299913_101705002	3300031229	Soil	MIARTTTTWFPRRLLAGALLAVGVSGLLGGCAGLPQGPTYTDADLRAICERQGGWWRGELIAGYCEYQTASISQAP
Ga0307469_100100184	3300031720	Hardwood Forest Soil	MTTVDSMKGAGRRLVLGALLAAAAGGLLTACSSMPIGPTYTEDELWVICERHGGWWRGRLIPGFCEYQTASIYQSP
Ga0307469_103045071	3300031720	Hardwood Forest Soil	RVSTGEGMMTVETTKSMARRLVLGALLAAAAGGFLGACSSMPQGPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASNQAP
Ga0307469_105685482	3300031720	Hardwood Forest Soil	MMTVERTKSMARRLVFGALLAAAAGGFLGACSSLPPGPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASSQAP
Ga0307469_110031961	3300031720	Hardwood Forest Soil	MSMTRTLKTRGSRRLLAGVLLAGGIGGLLGGCAGLPQGPTYTQDELRAICERRGGWWRGDLIPGFCEYQTALQAP
Ga0307473_100244002	3300031820	Hardwood Forest Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTEDELRVICERRGGWWRGNLIPGFCEYQTASIQAP
Ga0307472_1003040251	3300032205	Hardwood Forest Soil	MMTVETTKSMARRLVLGALLAAAAGGFLSACSSLPPAPTYTQDELRVICERRGGWWRGSLIEGFCEFQTASNQAP
Ga0310810_1000041710	3300033412	Soil	MTIVDTTKHVARRLVIGALLAAAAGGLLTACGSMPPGPTYTEDELKVICERRGGWWRGNLIPGYCEYQTAANQAP
Ga0326729_10028242	3300033432	Peat Soil	MTMTTVATMKSAGRRLWLGALLAATAGGLLTACSSLPPGPTYTEDELRVICERRGGWWRGTLIPGYCEFQSASLMQSP
Ga0326726_100749722	3300033433	Peat Soil	MTTVGTTKSARRRLVLGALLVAAAGGLLTACSSMPPGPTYTEDELRIICERRGGWWRGNLIPGYCEFQSASLTQSP
Ga0316628_1000313934	3300033513	Soil	MTTVGTTKSTCRRLVLGALLVAAAGGLLTACSSMPPGPTYTEDELRIICERRGGWWRGSLIPGYCEFQSASLTQSP
Ga0316628_1000467935	3300033513	Soil	MTTVGTTNRARRRLLLGALLVAVASGLLTACSSMPPGPTYSEDELRIICERRGGWWRGNLIPGYCEFQSASLSQSP
Ga0373948_0001050_781_1008	3300034817	Rhizosphere Soil	MTTVRATKGYARRLVLGALLAAAAGGSLGGCASMPQGPTYTEAELKAICERRGGWWRGNLIPGYCEYQTAANQAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059317

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences