Metagenome / Metatranscriptome Family F059481

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059481
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	53 residues
Representative Sequence	MATGAVTAREPKVDVKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWRQ
Number of Associated Samples	87
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.28 %
% of genes near scaffold ends (potentially truncated)	9.70 %
% of genes from short scaffolds (< 2000 bps)	67.16 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.985 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.642 % of family members)
Environment Ontology (ENVO)	Unclassified (35.821 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (80.597 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.28% β-sheet: 0.00% Coil/Unstructured: 82.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF01339	CheB_methylest	41.79
PF05977	MFS_3	2.99
PF01739	CheR	2.24
PF09364	XFP_N	2.24
PF00150	Cellulase	2.24
PF01432	Peptidase_M3	2.24
PF01584	CheW	2.24
PF03975	CheD	1.49
PF01979	Amidohydro_1	1.49
PF12897	Asp_aminotransf	1.49
PF02518	HATPase_c	1.49
PF00015	MCPsignal	1.49
PF00196	GerE	0.75
PF02775	TPP_enzyme_C	0.75
PF03705	CheR_N	0.75
PF01326	PPDK_N	0.75
PF10677	DUF2490	0.75
PF13570	PQQ_3	0.75
PF01408	GFO_IDH_MocA	0.75
PF02537	CRCB	0.75
PF09822	ABC_transp_aux	0.75
PF14238	DUF4340	0.75
PF13520	AA_permease_2	0.75
PF01914	MarC	0.75
PF00069	Pkinase	0.75
PF13557	Phenol_MetA_deg	0.75
PF08282	Hydrolase_3	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	83.58
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	5.97
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.99
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	2.99
COG1871	Chemotaxis receptor (MCP) glutamine deamidase CheD	Signal transduction mechanisms [T]	2.99
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	2.99
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	2.24
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	2.24
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	2.24
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	2.24
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	2.24
COG0239	Fluoride ion exporter CrcB/FEX, affects chromosome condensation	Cell cycle control, cell division, chromosome partitioning [D]	0.75
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.75
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.75
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.75
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.75
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.75
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.75
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.99 %
Unclassified	root	N/A	47.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.99 %
Unclassified	root	N/A	47.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.99 %
Unclassified	root	N/A	47.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.48 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.48 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.49 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.49 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.75 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.73 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.49 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.75 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.75 %
Sulfuricellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.48 %
Sulfuriferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.75 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.48 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.75 %
Sulfuriferula multivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	0.75 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10097159	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300001082\|JGI12664J13189_1000605	All Organisms → cellular organisms → Bacteria	4925	Open in IMG/M
3300001131\|JGI12631J13338_1003037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sulfuricellaceae → Sulfuriferula → Sulfuriferula multivorans	3533	Open in IMG/M
3300001356\|JGI12269J14319_10358024	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300003505\|JGIcombinedJ51221_10394937	Not Available	561	Open in IMG/M
3300004080\|Ga0062385_10103343	Not Available	1384	Open in IMG/M
3300004080\|Ga0062385_10373900	Not Available	843	Open in IMG/M
3300004080\|Ga0062385_10543926	Not Available	724	Open in IMG/M
3300004092\|Ga0062389_100845265	Not Available	1096	Open in IMG/M
3300004152\|Ga0062386_100456627	Not Available	1034	Open in IMG/M
3300004635\|Ga0062388_100123053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1911	Open in IMG/M
3300005534\|Ga0070735_10465267	Not Available	754	Open in IMG/M
3300005538\|Ga0070731_10097748	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300005538\|Ga0070731_10404213	Not Available	908	Open in IMG/M
3300005538\|Ga0070731_10934957	Not Available	574	Open in IMG/M
3300005541\|Ga0070733_10014466	All Organisms → cellular organisms → Bacteria	4955	Open in IMG/M
3300005541\|Ga0070733_10031504	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3308	Open in IMG/M
3300005541\|Ga0070733_10146016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1533	Open in IMG/M
3300005542\|Ga0070732_10128446	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1504	Open in IMG/M
3300005591\|Ga0070761_10013593	All Organisms → cellular organisms → Bacteria	4552	Open in IMG/M
3300005591\|Ga0070761_10027755	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300005591\|Ga0070761_10396013	Not Available	842	Open in IMG/M
3300005591\|Ga0070761_10455704	Not Available	785	Open in IMG/M
3300005591\|Ga0070761_10582018	Not Available	695	Open in IMG/M
3300005602\|Ga0070762_10006121	All Organisms → cellular organisms → Bacteria → Proteobacteria	5846	Open in IMG/M
3300005602\|Ga0070762_10007647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5322	Open in IMG/M
3300005602\|Ga0070762_10171528	Not Available	1312	Open in IMG/M
3300005610\|Ga0070763_10009887	All Organisms → cellular organisms → Bacteria → Acidobacteria	3892	Open in IMG/M
3300005610\|Ga0070763_10848275	Not Available	542	Open in IMG/M
3300005712\|Ga0070764_10023390	All Organisms → cellular organisms → Bacteria	3089	Open in IMG/M
3300005712\|Ga0070764_10137143	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M
3300005921\|Ga0070766_10010636	All Organisms → cellular organisms → Bacteria	4714	Open in IMG/M
3300005921\|Ga0070766_10499101	Not Available	808	Open in IMG/M
3300006176\|Ga0070765_100120871	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2296	Open in IMG/M
3300006176\|Ga0070765_100767148	Not Available	911	Open in IMG/M
3300009520\|Ga0116214_1047081	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300009521\|Ga0116222_1004960	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6584	Open in IMG/M
3300009521\|Ga0116222_1065780	Not Available	1568	Open in IMG/M
3300009521\|Ga0116222_1198957	Not Available	863	Open in IMG/M
3300009523\|Ga0116221_1005918	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7586	Open in IMG/M
3300009525\|Ga0116220_10050275	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300009525\|Ga0116220_10506115	Not Available	548	Open in IMG/M
3300009628\|Ga0116125_1091767	Not Available	806	Open in IMG/M
3300009665\|Ga0116135_1225144	Not Available	723	Open in IMG/M
3300009698\|Ga0116216_10649040	Not Available	635	Open in IMG/M
3300009759\|Ga0116101_1179942	Not Available	531	Open in IMG/M
3300010343\|Ga0074044_10002703	All Organisms → cellular organisms → Bacteria	15432	Open in IMG/M
3300017822\|Ga0187802_10002862	All Organisms → cellular organisms → Bacteria	4969	Open in IMG/M
3300017822\|Ga0187802_10047466	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300017822\|Ga0187802_10149679	Not Available	891	Open in IMG/M
3300017822\|Ga0187802_10316212	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300017933\|Ga0187801_10375083	Not Available	588	Open in IMG/M
3300017943\|Ga0187819_10493980	Not Available	698	Open in IMG/M
3300017943\|Ga0187819_10800909	Not Available	529	Open in IMG/M
3300017946\|Ga0187879_10452643	Not Available	712	Open in IMG/M
3300017948\|Ga0187847_10038305	All Organisms → cellular organisms → Bacteria	2805	Open in IMG/M
3300017948\|Ga0187847_10602780	Not Available	614	Open in IMG/M
3300017955\|Ga0187817_10679924	Not Available	656	Open in IMG/M
3300017995\|Ga0187816_10090119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1311	Open in IMG/M
3300018012\|Ga0187810_10303038	Not Available	661	Open in IMG/M
3300018030\|Ga0187869_10606156	Not Available	518	Open in IMG/M
3300018034\|Ga0187863_10761017	Not Available	548	Open in IMG/M
3300018047\|Ga0187859_10111854	Not Available	1438	Open in IMG/M
3300018047\|Ga0187859_10385440	Not Available	768	Open in IMG/M
3300020579\|Ga0210407_10109159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2108	Open in IMG/M
3300020579\|Ga0210407_11429914	Not Available	512	Open in IMG/M
3300020580\|Ga0210403_10004382	All Organisms → cellular organisms → Bacteria	12198	Open in IMG/M
3300020580\|Ga0210403_10058778	All Organisms → cellular organisms → Bacteria	3079	Open in IMG/M
3300020580\|Ga0210403_10799719	Not Available	750	Open in IMG/M
3300020582\|Ga0210395_10014674	All Organisms → cellular organisms → Bacteria → Acidobacteria	5787	Open in IMG/M
3300020582\|Ga0210395_10155374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1708	Open in IMG/M
3300020583\|Ga0210401_10004036	All Organisms → cellular organisms → Bacteria	15458	Open in IMG/M
3300020583\|Ga0210401_10102275	Not Available	2691	Open in IMG/M
3300020583\|Ga0210401_10133014	All Organisms → cellular organisms → Bacteria	2329	Open in IMG/M
3300020583\|Ga0210401_10257078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1606	Open in IMG/M
3300021170\|Ga0210400_10104169	All Organisms → cellular organisms → Bacteria → Proteobacteria	2250	Open in IMG/M
3300021171\|Ga0210405_10003010	All Organisms → cellular organisms → Bacteria	16867	Open in IMG/M
3300021171\|Ga0210405_10276976	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300021180\|Ga0210396_10000058	All Organisms → cellular organisms → Bacteria	222274	Open in IMG/M
3300021181\|Ga0210388_10197690	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300021181\|Ga0210388_10665242	Not Available	908	Open in IMG/M
3300021401\|Ga0210393_10005477	All Organisms → cellular organisms → Bacteria	9998	Open in IMG/M
3300021401\|Ga0210393_10098389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2327	Open in IMG/M
3300021403\|Ga0210397_10730667	Not Available	762	Open in IMG/M
3300021404\|Ga0210389_10409278	Not Available	1067	Open in IMG/M
3300021404\|Ga0210389_11372311	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300021405\|Ga0210387_10167759	All Organisms → cellular organisms → Bacteria → Proteobacteria	1890	Open in IMG/M
3300021406\|Ga0210386_10018563	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5425	Open in IMG/M
3300021420\|Ga0210394_10130109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2181	Open in IMG/M
3300021478\|Ga0210402_10229593	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300021478\|Ga0210402_11097497	Not Available	723	Open in IMG/M
3300021479\|Ga0210410_10531377	Not Available	1049	Open in IMG/M
3300021559\|Ga0210409_10048590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	3997	Open in IMG/M
3300024225\|Ga0224572_1029932	Not Available	1040	Open in IMG/M
3300027109\|Ga0208603_1005061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2191	Open in IMG/M
3300027370\|Ga0209010_1000002	All Organisms → cellular organisms → Bacteria	251966	Open in IMG/M
3300027567\|Ga0209115_1006659	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300027570\|Ga0208043_1090647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300027604\|Ga0208324_1055861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1143	Open in IMG/M
3300027609\|Ga0209221_1058378	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300027641\|Ga0208827_1070243	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300027648\|Ga0209420_1026751	Not Available	1826	Open in IMG/M
3300027729\|Ga0209248_10068736	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300027812\|Ga0209656_10157247	Not Available	1134	Open in IMG/M
3300027853\|Ga0209274_10325852	Not Available	790	Open in IMG/M
3300027855\|Ga0209693_10049536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2066	Open in IMG/M
3300027867\|Ga0209167_10029268	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300027879\|Ga0209169_10017226	All Organisms → cellular organisms → Bacteria	3933	Open in IMG/M
3300027884\|Ga0209275_10131547	Not Available	1311	Open in IMG/M
3300027884\|Ga0209275_10412787	Not Available	763	Open in IMG/M
3300027889\|Ga0209380_10236881	Not Available	1072	Open in IMG/M
3300027895\|Ga0209624_10280872	Not Available	1108	Open in IMG/M
3300027905\|Ga0209415_10031223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	7660	Open in IMG/M
3300028021\|Ga0265352_1002407	Not Available	940	Open in IMG/M
3300028906\|Ga0308309_10309865	Not Available	1337	Open in IMG/M
3300028906\|Ga0308309_10322162	Not Available	1312	Open in IMG/M
3300028906\|Ga0308309_11486174	Not Available	579	Open in IMG/M
3300030707\|Ga0310038_10475129	Not Available	532	Open in IMG/M
3300030813\|Ga0265750_1016293	Not Available	910	Open in IMG/M
3300031057\|Ga0170834_113390366	Not Available	849	Open in IMG/M
3300031231\|Ga0170824_121288622	Not Available	783	Open in IMG/M
3300031708\|Ga0310686_101737944	All Organisms → cellular organisms → Bacteria → Acidobacteria	83027	Open in IMG/M
3300031708\|Ga0310686_102884994	All Organisms → cellular organisms → Bacteria	2975	Open in IMG/M
3300031708\|Ga0310686_105260107	All Organisms → cellular organisms → Bacteria	53742	Open in IMG/M
3300031708\|Ga0310686_107597725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1355	Open in IMG/M
3300031708\|Ga0310686_108220852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1588	Open in IMG/M
3300031708\|Ga0310686_110097236	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300031708\|Ga0310686_112963611	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300031708\|Ga0310686_114768930	Not Available	3556	Open in IMG/M
3300031715\|Ga0307476_10617347	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	804	Open in IMG/M
3300031823\|Ga0307478_10833616	Not Available	772	Open in IMG/M
3300032160\|Ga0311301_10027341	All Organisms → cellular organisms → Bacteria	15182	Open in IMG/M
3300032180\|Ga0307471_101760845	Not Available	772	Open in IMG/M
3300032515\|Ga0348332_11246950	Not Available	825	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.25%
Host-Associated	Host-Associated	0.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.36%
Aquatic	Environmental → Aquatic	20.90%
Plants	Host-Associated → Plants	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.61%
Freshwater	Environmental → Aquatic → Freshwater	20.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.49%
Loam	Environmental → Terrestrial → Soil → Loam	25.37%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.12%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.37%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.19%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.46%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	18.66%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.22%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.49%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100971592	3300000567	Peatlands Soil	MATGAVTAREPNVDAKTEATEPSEAQPLTLKQRFTRLLCEIFKGREEHLGWRQ*
JGI12664J13189_10006052	3300001082	Forest Soil	MATGAVTAREPEADAKTATTEAPEAKPLTLKQRFFHLLHDIFKGREEHLGWRQ*
JGI12631J13338_10030372	3300001131	Forest Soil	MATGAVTAREPKVDAKGGTPETPKPQPGTLRQRIKRLLHEIFAGHEDHLGWHQ*
JGI12269J14319_103580241	3300001356	Peatlands Soil	MATGAVTAREPKVDTKPEETTETAVAQPLTLKQRFVCLLHQIFQGHEEYLGWRH*
JGIcombinedJ51221_103949372	3300003505	Forest Soil	MATGAVTAREPKVDTKPETTETAPQQPLTLKQRFVRLLHEIFEGREEYLG
Ga0062385_101033431	3300004080	Bog Forest Soil	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFRLLHEIFQGREEHLGWRQ*
Ga0062385_103739002	3300004080	Bog Forest Soil	MATGTVTAREPQKDTKTETKETSTAQPETFKGRMIRLLHEIFHGREEHLGWHQ*
Ga0062385_105439262	3300004080	Bog Forest Soil	MATGAVTAREPKAESKTETTQATETQPLTLKQRFFHLLHEIFHGREEHLGWHQ*
Ga0062389_1008452652	3300004092	Bog Forest Soil	MATGAAPAVEPKAEAKTETTETGKAQPLTLRQRFLHLLHDIFQGREEHLGWRQ*
Ga0062386_1004566272	3300004152	Bog Forest Soil	MATGTVTAREPQKDTKTETKETSTAQSVTFKGRLIRLLHEIFQGREEHLGWHQ*
Ga0062388_1001230533	3300004635	Bog Forest Soil	MSTGAVTAREPEADPKGAKAEPAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ*
Ga0070735_104652672	3300005534	Surface Soil	MATGAVTAREPKVDAKPETTATTPQQPLTLKQRFVRLLHEIFEGREEYLGWRH*
Ga0070731_100977483	3300005538	Surface Soil	MATGAVTAREPKVDAKPETTETTPQQPLTLKQRFVRLLHEIFEGREEYLGWRH*
Ga0070731_104042132	3300005538	Surface Soil	MATGTVTARDPKEETKTEANVSETQPLTLKQRIVHLLHEIFKGREEHLGWRQ*
Ga0070731_109349572	3300005538	Surface Soil	MATGAVTAREPKVDVKNETTETSEGQPLTVKQRFIHLLHEIFKGHEEHLGWRQ*
Ga0070733_100144663	3300005541	Surface Soil	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ*
Ga0070733_100315041	3300005541	Surface Soil	VTAREPKVDVKTEPKETSEAQPLTVKQRFVHLLHEIFKGREEHLGWHQ*
Ga0070733_101460162	3300005541	Surface Soil	MATGAVTAREPKVDTKPETTETAPQQPLTLKQRFVRLLHEIFEGREEYLGWRH*
Ga0070732_101284461	3300005542	Surface Soil	MATGAVTAREPKVDVKNETTETSEAQPLTVKQRFIHLLHEIFKGHEEHLGWRQ*
Ga0070761_100135934	3300005591	Soil	MSTGTVTAREPEVDPKGAKADPAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ*
Ga0070761_100277553	3300005591	Soil	MATGAVTAREPKVDAKGETPETPQPQPLTIKQRINRLLHEIFEGHEEHLGWHQ*
Ga0070761_103960132	3300005591	Soil	MATGAVTAREPNVGVKTETKETTEAQPQTLKQRFFHLLHEIFMGREEHLGWRQ*
Ga0070761_104557042	3300005591	Soil	MATGAVTAREPKVDAKGDTLETPEPQPVTLRQRIKRLLHEIFAGHEDHLGWRQ*
Ga0070761_105820181	3300005591	Soil	MATGAVTAREPEADAKTATMETAEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ*
Ga0070762_100061215	3300005602	Soil	MATGAVTAREPEVKTTGESTATTGTAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ*
Ga0070762_100076473	3300005602	Soil	MATGAVTAREPKVDAKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWHQ*
Ga0070762_101715281	3300005602	Soil	MATGAVTAREPNVDVKTEKKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ*
Ga0070763_100098872	3300005610	Soil	MATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ*
Ga0070763_108482752	3300005610	Soil	MATGAVTAREPKVDVKPETTETPEAQPLTLKQRFFHLLHEIFMGREEHLGWRQ*
Ga0070764_100233905	3300005712	Soil	GTVTAREPEVDPKGAKADPAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ*
Ga0070764_101371431	3300005712	Soil	MSTGTVTAREPEVDPKGAKTEAAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ*
Ga0070766_100106363	3300005921	Soil	MATGAVTAREPKVDVKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWHQ*
Ga0070766_104991013	3300005921	Soil	MATGAVTAREPEVDAKITTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ*
Ga0070765_1001208711	3300006176	Soil	MATGAVTAREPKVDVKPEATETPQAQPLTLKQRFFHLLHEIFMGREEHLGWRQ*
Ga0070765_1007671483	3300006176	Soil	MATGAVTAREPKAETKTETTESSETQPLTLKQRFVHLLHEIFQGREEHLGWHQ*
Ga0116214_10470811	3300009520	Peatlands Soil	MLMATGAVTAREPNVDAKTEATEPSEAQPLTLKQRFTRLLCEIFKGREEHLG
Ga0116222_10049608	3300009521	Peatlands Soil	MLMATGAVTAREPNVDAKTEATEPSEAQPLTLKQRFTRLLCEIFKGREEHLGWRQ*
Ga0116222_10657801	3300009521	Peatlands Soil	MATGAVTAREPKVDTKPEETTETAKPQPLTRKQRFVRLLHEIFQGRDEYLGWRH*
Ga0116222_11989571	3300009521	Peatlands Soil	MATGAVTAREPKVDVKTETKAASEAQRLTRKQRFVQLLHEIFKGREEHLGWRQ*
Ga0116221_10059181	3300009523	Peatlands Soil	MVTGAVTAREPDVDAKTEATEPSEPQPLTLKQRITRLLCEIFKGREEHLGWRQ*
Ga0116220_100502752	3300009525	Peatlands Soil	MLMATGAVTAREPNVDAKTEATEPSEPQPLTLKQRITRLLCEIFKGREEHLGWRQ*
Ga0116220_105061152	3300009525	Peatlands Soil	MATGAVTAREPKVDVKTETKAASAAQPLTLKQRFVHLLHEIFKGREEHLGWHQ*
Ga0116125_10917672	3300009628	Peatland	MATGAVTAREPEADAKTPTTETPEAKPLTLKQRFFHLLHEIFKGREEHLGWRQ*
Ga0116135_12251441	3300009665	Peatland	MATGAVTAREPDADAKTATTETPEAKPLTLKQRFFHLLHEIFKGREEHLGWRQ*
Ga0116216_106490401	3300009698	Peatlands Soil	MATGAVTAREPKVDVKTETKAASEAQPLTLKQRFVHLLHEIFMGREEHLGWRQ*
Ga0116101_11799422	3300009759	Peatland	MATGAVTAREPEVDAKTKTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ*
Ga0074044_100027036	3300010343	Bog Forest Soil	MATGAVTAREPKVDTKPEETAETAKPQPLTLKQRFVRLLHEIFQGRDEYLGWRH*
Ga0187802_100028624	3300017822	Freshwater Sediment	MATGAVTAREPKVDTKPEETTETAVAQPLTLKQRFVRLLHEIFQGREEYLGWRH
Ga0187802_100474662	3300017822	Freshwater Sediment	MATGAVTAREPKVDTKLEETTETAAQQPLTLKQRFVRLLHDIFQGREEYLGWRH
Ga0187802_101496792	3300017822	Freshwater Sediment	MATGAVTAREPKVDVKTETKETTAAQPQTLKQRFVHLLHEIFMGREEHLGWRQ
Ga0187802_103162122	3300017822	Freshwater Sediment	MATGAVTAREPKVDVKTETTETSAAHPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0187801_103750831	3300017933	Freshwater Sediment	MATGTVTAREPKVDTNPAETTEIAATQPLTRKQRFIRLLHEIFQGREEYLGWRH
Ga0187819_104939801	3300017943	Freshwater Sediment	MATGTVTAREPKVDTKPEETTETAKPQPLTLKQRFVRLLHEIFQGRDEYLGWRH
Ga0187819_108009091	3300017943	Freshwater Sediment	MATGAVTAREPKVDVKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWRQ
Ga0187879_104526432	3300017946	Peatland	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFRLLHEIFQGREEHLGWRQ
Ga0187847_100383055	3300017948	Peatland	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0187847_106027801	3300017948	Peatland	MATGAVTAREPEADAKTPTTETPEAKPLTLKQRFFHLLHEIFKGREEHLGWRQ
Ga0187817_106799241	3300017955	Freshwater Sediment	KLISRRRPSMATGTVTAREPKVDTKPEETTETAKPQPLTLKQRFVRLLHEIFQGRDEYLGWRH
Ga0187816_100901191	3300017995	Freshwater Sediment	MATGAVTAREPKVDVKTETTETSAAQPQTLKQRFVHLLYAIFMGREEHLGWRQ
Ga0187810_103030382	3300018012	Freshwater Sediment	MATGAVTAREPKVDVKTETKETTAAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0187869_106061561	3300018030	Peatland	MATGAVTAREPEVDAKTKTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0187863_107610172	3300018034	Peatland	MATGAVTAREPEADAKTATTETPEAKPLTLKQRFFHLLHEIFKGREEHLGWRQ
Ga0187859_101118541	3300018047	Peatland	IMATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0187859_103854402	3300018047	Peatland	MATGAVTAREPEVDAKTTTTETPEAKPWTLKQRFFRRLHDIFHGREEHLGGRQ
Ga0210407_101091591	3300020579	Soil	MATGAVTAREPKVDVKTETKETTEAQPQTLKQRFFHLLHEIFMGREEHLGWRQ
Ga0210407_114299142	3300020579	Soil	MATGAAPAFEPKVDAKTETTETGKAQSSTLKQRFVSLLHEIFKGHEEHLEWRQ
Ga0210403_100043829	3300020580	Soil	MATGAVTAREPKVDVKTETTETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0210403_100587782	3300020580	Soil	MATGAVTAREPKVDAKTQTTETSEALPLTLKQRFTRLLHEIFKGREEYLGWRH
Ga0210403_107997191	3300020580	Soil	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFVHLLHEIFQGREEHLGWRQ
Ga0210395_100146744	3300020582	Soil	MATGAVTAREPKVDAKGETPETPQPQPLTIKQRINRLLHEIFEGHEEHLGWHQ
Ga0210395_101553743	3300020582	Soil	MATGAVTAREPKVDVKPETTETPEAQPLTLKQRFFHLLHEIFMGREEHLGWRQ
Ga0210401_1000403616	3300020583	Soil	MATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLMHEIFMGREEHLGWRQ
Ga0210401_101022752	3300020583	Soil	MATGAVTAREPKVDTKPETTETAPQQPLTLKQRFVRLLHEIFEGREEYLGWRH
Ga0210401_101330142	3300020583	Soil	MATGAVTAREPKVDVKNETTETSEGQPLTVKQRFIHLLHEIFKGHEEHLGWRQ
Ga0210401_102570782	3300020583	Soil	MATGAVTAREPKVDVKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWHQ
Ga0210400_101041692	3300021170	Soil	MATGAVTAREPEVKTTGESTATTGTAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ
Ga0210405_1000301010	3300021171	Soil	MATGAVTAREPKVDVKTETKTASEAQPLTLKQRFVHLLHEIFKGHEEHLGWRQ
Ga0210405_102769762	3300021171	Soil	MATGAVTAREPKVDVKAETKAASEAQPLTRKQRFVQLLHEIFKGREEHLGWRQ
Ga0210396_100000583	3300021180	Soil	MATGAVTAREPKVDVKAETTQSSEAQPLTVKQRFIHLLHEIFKGHEEHLGWRQ
Ga0210388_101976902	3300021181	Soil	MATGTVTARDPKGEAKTEANVSETQPLTLKQRIVHLLHEIFKGREEHLGWRQ
Ga0210388_106652421	3300021181	Soil	MATGAVTAREPEADAKTATMETAEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0210393_100054778	3300021401	Soil	MATGAVTAREPEVDAKITTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0210393_100983891	3300021401	Soil	MATGAVTAREPEVKTTGETTATTGTAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ
Ga0210397_107306672	3300021403	Soil	MATGAVTAREPKVDVKTETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0210389_104092781	3300021404	Soil	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFVHLLHEIFQG
Ga0210389_113723111	3300021404	Soil	MATGAVTAREPKMDVTTETETASEAQPLTLKQRFIHLLHEIFKGHEEHLGWRQ
Ga0210387_101677592	3300021405	Soil	MATGTATARDPKGEAKTEANVSETQPLTLKQRIVHLLHEIFKGREEHLGWRQ
Ga0210386_100185631	3300021406	Soil	EGMRMATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLMHEIFMGREEHLGWRQ
Ga0210394_101301092	3300021420	Soil	MATGAVTAREPNVDTKPETTETAPQQPLTLKQRFVRLLHEIFEGREEYLGWRH
Ga0210402_102295932	3300021478	Soil	MATGAVTAREPKAETKTETTQASETQPLTLKQRFVHLLHEIFQGREEHLGWHQ
Ga0210402_110974972	3300021478	Soil	MATGAVTAREPKGDPKAETNASETQPLTLKQRFVHLLHEIFQGREEHLGWRQ
Ga0210410_105313772	3300021479	Soil	MATGAVTAREPKVDVKTETKETTEAQPQTLKQRFFLLLHEIFMGREEHLGWRQ
Ga0210409_100485905	3300021559	Soil	MATGAVTAREPKVDAKTETTETSEAQPLTLKQRFVHLLHEIFKGREEHLGWHQ
Ga0224572_10299322	3300024225	Rhizosphere	MATGTVTAREPEAKVQTETAATAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ
Ga0208603_10050611	3300027109	Forest Soil	MATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLMHEVFMGREEHLGWRQ
Ga0209010_100000243	3300027370	Forest Soil	MATGAVTAREPEADAKTATTEAPEAKPLTLKQRFFHLLHDIFKGREEHLGWRQ
Ga0209115_10066593	3300027567	Forest Soil	MSTGTVTAREPEVDPKGAKADPAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ
Ga0208043_10906471	3300027570	Peatlands Soil	MATGAVTAREPNVDAKTEATEPSEAQPLTLKQRFTRLLCEIFKGREEHLGWRQ
Ga0208324_10558611	3300027604	Peatlands Soil	MATGAVTAREPKVDTKPEETTETAKPQPLTRKQRFVRLLHEIFQGRDEYLGWRH
Ga0209221_10583782	3300027609	Forest Soil	MATGAVTAREPEADAKTATTETPEAKPLTLKQRFFHLLYDIFKGREEHLGWRQ
Ga0208827_10702431	3300027641	Peatlands Soil	MVTGAVTAREPDVDAKTEATEPSEPQPLTLKQRITRLLCEIFKGREEHLGWRQ
Ga0209420_10267513	3300027648	Forest Soil	MSTGTVTAREPEADPKGAKTEAAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ
Ga0209248_100687362	3300027729	Bog Forest Soil	MSTGAVTAREPEADPKGAKAEPAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ
Ga0209656_101572472	3300027812	Bog Forest Soil	MATGTVTAREPQKDTKTETKETSTAQSVTFKGRLIRLLHEIFQGREEHLGWHQ
Ga0209274_103258522	3300027853	Soil	MATGAVTAREPKVDAKGDTLETPEPQPVTLRQRIKRLLHEIFAGHEDHLGWRQ
Ga0209693_100495363	3300027855	Soil	MATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLLREIFMGREEHLGWRQ
Ga0209167_100292682	3300027867	Surface Soil	MATGAVTAREPKVDVKTEPKETSEAQPLTVKQRFVHLLHEIFKGREEHLGWHQ
Ga0209169_100172263	3300027879	Soil	MSTGTVTAREPEVDPKGAKTEAAEAKPLTLKQRFFHLLHEIFRGREEHLGWRQ
Ga0209275_101315471	3300027884	Soil	MATGAVTAREPEVEAKTTTTETPEAKPLTLKQRFFHLLHEIFQGREEHLGWRQ
Ga0209275_104127872	3300027884	Soil	MATGAVTAREPNADVKTETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0209380_102368811	3300027889	Soil	MATGAVTAREPKVDVKPEATETPQAQPLTLKQRFFHLLHEIFMGREEHLGWRQ
Ga0209624_102808722	3300027895	Forest Soil	MATGAVTAREPEADAKTATTETPEAKPLTLKQRFFHLLHDIFKGREEHLGWRQ
Ga0209415_100312232	3300027905	Peatlands Soil	MATGAVTAREPKVDTKPEETTETAVAQPLTLKQRFVCLLHQIFQGHEEYLGWRH
Ga0265352_10024072	3300028021	Soil	MATGAVTAREPKVDVKPETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0308309_103098651	3300028906	Soil	MATGAATAREPNVDVKTEAKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0308309_103221623	3300028906	Soil	MATGAVTAREPKAETKTETTESSETQPLTLKQRFVHLLHEIFQGREEHLGWHQ
Ga0308309_114861741	3300028906	Soil	MATGAVTAREPNADVKTETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGW
Ga0310038_104751291	3300030707	Peatlands Soil	MATGAVTAREPKVDVKTETKAASAAQPLTLKQRFVHLLHEIFKGREEHLGWHQ
Ga0265750_10162932	3300030813	Soil	MATGAVTAREPKVDVKPEATETPQAQPQTLKQRFFHLLHEIFMGREEHLGWRQ
Ga0170834_1133903661	3300031057	Forest Soil	MATGAVTAREPKADVKTETQAAPVAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0170824_1212886221	3300031231	Forest Soil	MATGAVTAREPKADVKTETQAASEVQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0310686_10173794469	3300031708	Soil	MATGAVTAREPKVDAKSETTEVSETQPVTLQQRIKRLLHEIFEGHEEHLGWHQ
Ga0310686_1028849945	3300031708	Soil	MATGAVTAREPEVDAKTTTTETPEAKPLTLKQRFFRLLHEIFQGREEHLG
Ga0310686_10526010738	3300031708	Soil	MATGAVTAREPNPEAKTEATEPSEAQPLTLKQRFTRLLCEIFKGREEHLGWRQ
Ga0310686_1075977252	3300031708	Soil	MATGAVTAREPNVDVKTETKETTEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0310686_1082208523	3300031708	Soil	REPEVDAKTTTTETPEAKPLTLKQRFFRLLHEIFQGREEHLGWRQ
Ga0310686_1100972362	3300031708	Soil	MATGAVTAREPNVDVKTETKETSQAQPLTVKQRFVHLLHEIFKGHEEHLGWRQ
Ga0310686_1129636112	3300031708	Soil	MATGAVTAREPKVDVKAETKETSEAQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0310686_1147689302	3300031708	Soil	MATGAVTAREPKVDVKTETKETPEVQPQTLKQRFIHLLHEIFMGREEHLGWRQ
Ga0307476_106173471	3300031715	Hardwood Forest Soil	MATGAVTAREPKVDTKPETTETAPQQPLTLRQRFVRLLHEIFEGREEYLGWRH
Ga0307478_108336162	3300031823	Hardwood Forest Soil	MATGAVTAREPEVKATGETTATTGTAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ
Ga0311301_100273417	3300032160	Peatlands Soil	MATGAVTAREPKVDVKTETKAASEAQRLTRKQRFVQLLHEIFKGREEHLGWRQ
Ga0307471_1017608451	3300032180	Hardwood Forest Soil	MATGAAPALEPKVNAKTETTETTEGQPLTLKQRFTRLLHEIFKGREEYLGWRN
Ga0348332_112469502	3300032515	Plant Litter	MRINLEEAISMATGTVTAREPEAKVQTETAATAEAKPLTLKQRFIHLLHEIFQGREEHLGWRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059481

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences