Metagenome / Metatranscriptome Family F059708

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059708
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	66 residues
Representative Sequence	MGSTFDIFKVTSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQTQEYLEEIS
Number of Associated Samples	84
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.69 %
% of genes near scaffold ends (potentially truncated)	30.08 %
% of genes from short scaffolds (< 2000 bps)	76.69 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.158 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (23.308 % of family members)
Environment Ontology (ENVO)	Unclassified (52.632 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.120 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.22% β-sheet: 26.09% Coil/Unstructured: 58.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
d.61.1.1: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase	d1jh6a_	1jh6	0.68337
d.73.1.1: RuBisCO, small subunit	d1wdds_	1wdd	0.68286
d.58.29.2: GGDEF domain	d1w25a3	1w25	0.66718
d.86.1.0: automated matches	d2idra_	2idr	0.66364
c.119.1.1: DegV-like	d1pzxa_	1pzx	0.66347

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00072	Response_reg	10.53
PF12779	WXXGXW	3.01
PF11154	DUF2934	2.26
PF12732	YtxH	1.50
PF06348	DUF1059	1.50
PF00196	GerE	0.75
PF13302	Acetyltransf_3	0.75
PF12844	HTH_19	0.75
PF12019	GspH	0.75
PF00782	DSPc	0.75
PF08450	SGL	0.75
PF06271	RDD	0.75
PF13411	MerR_1	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.75
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.75
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
All Organisms	root	All Organisms	36.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
cellular organisms	root	All Organisms → cellular organisms	36.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.02 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.02 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.02 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.01 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.02 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.01 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.02 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.26 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.75 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.02 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.26 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.75 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.02 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2.26 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.75 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10247109	Not Available	718	Open in IMG/M
3300001867\|JGI12627J18819_10295325	Not Available	652	Open in IMG/M
3300002245\|JGIcombinedJ26739_100142683	Not Available	2263	Open in IMG/M
3300003505\|JGIcombinedJ51221_10215545	Not Available	779	Open in IMG/M
3300004633\|Ga0066395_10206574	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300005434\|Ga0070709_10852919	Not Available	718	Open in IMG/M
3300005435\|Ga0070714_100165354	Not Available	2005	Open in IMG/M
3300005436\|Ga0070713_100119320	Not Available	2311	Open in IMG/M
3300005436\|Ga0070713_100564337	Not Available	1079	Open in IMG/M
3300005439\|Ga0070711_100575979	Not Available	936	Open in IMG/M
3300005471\|Ga0070698_100999412	Not Available	784	Open in IMG/M
3300005536\|Ga0070697_100452756	Not Available	1118	Open in IMG/M
3300005536\|Ga0070697_101506261	Not Available	601	Open in IMG/M
3300005536\|Ga0070697_101982575	Not Available	521	Open in IMG/M
3300005538\|Ga0070731_10020181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4626	Open in IMG/M
3300005541\|Ga0070733_10142937	All Organisms → cellular organisms → Bacteria → Acidobacteria	1549	Open in IMG/M
3300005542\|Ga0070732_10088450	Not Available	1817	Open in IMG/M
3300005602\|Ga0070762_10028272	All Organisms → cellular organisms → Bacteria	2979	Open in IMG/M
3300005921\|Ga0070766_10462269	Not Available	839	Open in IMG/M
3300006028\|Ga0070717_10223929	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300006893\|Ga0073928_10003187	All Organisms → cellular organisms → Bacteria	26346	Open in IMG/M
3300010048\|Ga0126373_10096746	All Organisms → cellular organisms → Bacteria → Proteobacteria	2722	Open in IMG/M
3300010048\|Ga0126373_10639676	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300010048\|Ga0126373_10919847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300010048\|Ga0126373_11308490	Not Available	791	Open in IMG/M
3300010048\|Ga0126373_12601517	Not Available	564	Open in IMG/M
3300010159\|Ga0099796_10146352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	927	Open in IMG/M
3300010361\|Ga0126378_10171263	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2230	Open in IMG/M
3300010376\|Ga0126381_100076634	All Organisms → cellular organisms → Bacteria	4190	Open in IMG/M
3300010376\|Ga0126381_103841816	Not Available	586	Open in IMG/M
3300012205\|Ga0137362_10885193	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300012361\|Ga0137360_10976192	Not Available	731	Open in IMG/M
3300012683\|Ga0137398_10300661	Not Available	1079	Open in IMG/M
3300012917\|Ga0137395_10968690	Not Available	611	Open in IMG/M
3300012971\|Ga0126369_13493988	Not Available	515	Open in IMG/M
3300016341\|Ga0182035_10899967	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	781	Open in IMG/M
3300016357\|Ga0182032_10413874	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300016371\|Ga0182034_11093109	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300016422\|Ga0182039_10108567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	2066	Open in IMG/M
3300018001\|Ga0187815_10283622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300020199\|Ga0179592_10141443	Not Available	1102	Open in IMG/M
3300020579\|Ga0210407_10155473	Not Available	1764	Open in IMG/M
3300020579\|Ga0210407_10617422	Not Available	844	Open in IMG/M
3300020580\|Ga0210403_10884733	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300020580\|Ga0210403_11000273	Not Available	654	Open in IMG/M
3300020581\|Ga0210399_10024936	All Organisms → cellular organisms → Bacteria → Acidobacteria	4752	Open in IMG/M
3300020582\|Ga0210395_10442475	Not Available	978	Open in IMG/M
3300020583\|Ga0210401_10002075	All Organisms → cellular organisms → Bacteria → Acidobacteria	22444	Open in IMG/M
3300020583\|Ga0210401_10855239	Not Available	769	Open in IMG/M
3300021168\|Ga0210406_10238297	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300021168\|Ga0210406_10616717	Not Available	845	Open in IMG/M
3300021171\|Ga0210405_10673383	Not Available	801	Open in IMG/M
3300021178\|Ga0210408_10322053	Not Available	1233	Open in IMG/M
3300021405\|Ga0210387_10019425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5287	Open in IMG/M
3300021406\|Ga0210386_10792266	Not Available	815	Open in IMG/M
3300021407\|Ga0210383_10301007	Not Available	1379	Open in IMG/M
3300021420\|Ga0210394_10003909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17920	Open in IMG/M
3300021420\|Ga0210394_11743993	Not Available	520	Open in IMG/M
3300021432\|Ga0210384_10377504	Not Available	1277	Open in IMG/M
3300021560\|Ga0126371_10054302	All Organisms → cellular organisms → Bacteria	3842	Open in IMG/M
3300021560\|Ga0126371_10151241	All Organisms → cellular organisms → Bacteria	2383	Open in IMG/M
3300021560\|Ga0126371_10707539	Not Available	1155	Open in IMG/M
3300021560\|Ga0126371_10735635	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1134	Open in IMG/M
3300022557\|Ga0212123_10004538	All Organisms → cellular organisms → Bacteria	26353	Open in IMG/M
3300025928\|Ga0207700_10136865	Not Available	2007	Open in IMG/M
3300025929\|Ga0207664_10164792	Not Available	1893	Open in IMG/M
3300026557\|Ga0179587_10144696	Not Available	1477	Open in IMG/M
3300027050\|Ga0209325_1034089	Not Available	611	Open in IMG/M
3300027050\|Ga0209325_1037688	Not Available	582	Open in IMG/M
3300027061\|Ga0209729_1003728	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300027071\|Ga0209214_1043649	Not Available	603	Open in IMG/M
3300027071\|Ga0209214_1056546	Not Available	533	Open in IMG/M
3300027076\|Ga0208860_1040505	Not Available	502	Open in IMG/M
3300027266\|Ga0209215_1020774	Not Available	849	Open in IMG/M
3300027326\|Ga0209731_1060012	Not Available	583	Open in IMG/M
3300027371\|Ga0209418_1060464	Not Available	676	Open in IMG/M
3300027605\|Ga0209329_1006002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2169	Open in IMG/M
3300027842\|Ga0209580_10148430	Not Available	1153	Open in IMG/M
3300027842\|Ga0209580_10274338	Not Available	839	Open in IMG/M
3300027869\|Ga0209579_10121709	All Organisms → cellular organisms → Bacteria → Acidobacteria	1386	Open in IMG/M
3300027889\|Ga0209380_10549563	Not Available	671	Open in IMG/M
3300028536\|Ga0137415_10805828	Not Available	749	Open in IMG/M
3300030848\|Ga0075388_11582556	Not Available	623	Open in IMG/M
3300031057\|Ga0170834_100629843	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300031057\|Ga0170834_104023127	Not Available	633	Open in IMG/M
3300031057\|Ga0170834_105623355	Not Available	1422	Open in IMG/M
3300031057\|Ga0170834_109219876	Not Available	790	Open in IMG/M
3300031057\|Ga0170834_110260884	Not Available	857	Open in IMG/M
3300031128\|Ga0170823_15231120	Not Available	1334	Open in IMG/M
3300031128\|Ga0170823_17586606	Not Available	865	Open in IMG/M
3300031231\|Ga0170824_112648950	Not Available	647	Open in IMG/M
3300031231\|Ga0170824_114673098	Not Available	1419	Open in IMG/M
3300031231\|Ga0170824_118754525	Not Available	1506	Open in IMG/M
3300031231\|Ga0170824_122455364	Not Available	1293	Open in IMG/M
3300031446\|Ga0170820_13463896	Not Available	565	Open in IMG/M
3300031474\|Ga0170818_112365316	Not Available	700	Open in IMG/M
3300031590\|Ga0307483_1017072	Not Available	687	Open in IMG/M
3300031715\|Ga0307476_10391507	Not Available	1026	Open in IMG/M
3300031718\|Ga0307474_10012302	All Organisms → cellular organisms → Bacteria → Acidobacteria	6199	Open in IMG/M
3300031720\|Ga0307469_10101773	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	2020	Open in IMG/M
3300031720\|Ga0307469_10243106	Not Available	1442	Open in IMG/M
3300031720\|Ga0307469_10715707	Not Available	909	Open in IMG/M
3300031744\|Ga0306918_10128674	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300031753\|Ga0307477_10529197	Not Available	799	Open in IMG/M
3300031753\|Ga0307477_10818783	Not Available	618	Open in IMG/M
3300031753\|Ga0307477_11000718	Not Available	548	Open in IMG/M
3300031754\|Ga0307475_10008744	All Organisms → cellular organisms → Bacteria	6648	Open in IMG/M
3300031754\|Ga0307475_10031122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3875	Open in IMG/M
3300031754\|Ga0307475_10051013	All Organisms → cellular organisms → Bacteria	3106	Open in IMG/M
3300031754\|Ga0307475_10613913	Not Available	870	Open in IMG/M
3300031754\|Ga0307475_10645342	Not Available	846	Open in IMG/M
3300031754\|Ga0307475_10735555	Not Available	785	Open in IMG/M
3300031754\|Ga0307475_10737831	Not Available	784	Open in IMG/M
3300031754\|Ga0307475_11081195	Not Available	628	Open in IMG/M
3300031754\|Ga0307475_11360266	Not Available	548	Open in IMG/M
3300031820\|Ga0307473_10376206	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300031833\|Ga0310917_10350958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300031879\|Ga0306919_10494716	Not Available	942	Open in IMG/M
3300031912\|Ga0306921_10043543	All Organisms → cellular organisms → Bacteria → Acidobacteria	5077	Open in IMG/M
3300031912\|Ga0306921_12139181	Not Available	592	Open in IMG/M
3300031962\|Ga0307479_10083357	All Organisms → cellular organisms → Bacteria → Acidobacteria	3095	Open in IMG/M
3300031962\|Ga0307479_10101692	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
3300031962\|Ga0307479_10157329	All Organisms → cellular organisms → Bacteria → Acidobacteria	2230	Open in IMG/M
3300031962\|Ga0307479_10210266	Not Available	1916	Open in IMG/M
3300031962\|Ga0307479_10845728	Not Available	889	Open in IMG/M
3300032001\|Ga0306922_11075944	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300032174\|Ga0307470_10253020	Not Available	1165	Open in IMG/M
3300032180\|Ga0307471_100069836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3023	Open in IMG/M
3300032180\|Ga0307471_100187682	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300032180\|Ga0307471_100191217	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2034	Open in IMG/M
3300032180\|Ga0307471_103713289	Not Available	540	Open in IMG/M
3300032205\|Ga0307472_100254612	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300032205\|Ga0307472_100775397	Not Available	873	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.74%
Aquatic	Environmental → Aquatic	2.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.50%
Freshwater	Environmental → Aquatic → Freshwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.19%
Loam	Environmental → Terrestrial → Soil → Loam	22.56%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.02%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.75%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	23.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	9.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.02%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.51%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.26%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102471092	3300001867	Forest Soil	MEDATMGSTFDIFKMTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS*
JGI12627J18819_102953252	3300001867	Forest Soil	MDEAIEDATMGSTFDIFKVTLDGPLWVEAVRGLEKAKARMADLALTSPGEYFVHCQDQGVIAKQSQEFLEEIS*
JGIcombinedJ26739_1001426833	3300002245	Forest Soil	MEDATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTQEFLEEIS*
JGIcombinedJ51221_102155451	3300003505	Forest Soil	MPFGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAKQSQEFLEEIS*
Ga0066395_102065741	3300004633	Tropical Forest Soil	MDSIFDIFKVTSDGPLWVEAVTGLERAKEQMARVALSSPGEYFIYSQEEGVIAKQTQEFLEEIP*
Ga0070709_108529191	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKITSDGPLWVEAVQGLEKAEGRMAHLALTSPEEYFIHSQDSGVVAKQTQEYLEEIT*
Ga0070714_1001653544	3300005435	Agricultural Soil	MMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQRQDYLEEIS*
Ga0070713_1001193204	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKITSDGPPWVEAVQGLEKAKERMAHLALTSSEEYFIHSPDSGVVAKQTQEYLEEIT*
Ga0070713_1005643373	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDSTFDIFKVTSDGPLWVEAVTGLERAKERMAHLTLTSPGEYFIHSQEQGVVAKQTQEFVEE
Ga0070711_1005759793	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSSEEYFIHSQDSGVVAKQTEEYLKEIT*
Ga0070698_1009994122	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSSEEYFIHSQDSGVVAKQTEEYLEEIT*
Ga0070697_1004527562	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEDATMGSTFDIFKVTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS*
Ga0070697_1015062611	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKVTSDGPLWVEVVQGLEKAKEQMAHLALSSPGEYFIHSQEEGVIAKQTREFLE
Ga0070697_1019825751	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTQEFLEEIS*
Ga0070731_100201819	3300005538	Surface Soil	MDSTFDIFKITSDGPLWVEAVEGLEKAKERMAQLALTSPGEYFIHSHDNGVVAKQTREYLEEIT*
Ga0070733_101429373	3300005541	Surface Soil	MDSTFDIFKVTSGGPLWVEAVEGLEKAKERMAQLALTSPGEYFIHSQDNGVVAKQTREYLEEIT*
Ga0070732_100884502	3300005542	Surface Soil	MGSTFDIFKVTSDGPLWVEAVQALETAKKQMTRLALTSPGEYFIHSQEQGVISKQTQEFSEDIV*
Ga0070762_100282725	3300005602	Soil	MDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAEQSQEFLEEIS*
Ga0070766_104622692	3300005921	Soil	VTAVPTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAEQSQEFLEEIS*
Ga0070717_102239291	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDSTFDIFKVTSDGPLWVEAVTGLERAKERMAHLTLTSPGEYFIHSQEQGVVAKQTQEFVEERGQF*
Ga0073928_100031874	3300006893	Iron-Sulfur Acid Spring	MDSTFDIFKVTSHGPLWVEAVQGLERAKEQMARLALTFPGEYFIHSQEEGVVAPNRPKSFWKKYHD*
Ga0126373_100967463	3300010048	Tropical Forest Soil	MEDAMMGSTFDIFKATVNGPVWVEAVQGLKEAKERMARLALTSPGEYFLHSQENGIVARQAEEWADVL*
Ga0126373_106396763	3300010048	Tropical Forest Soil	KVMSDGPLWVEAVPGLDRAKERMARLALSSPGEYFIHSQEEGVIAKQTQEFLEEIP*
Ga0126373_109198471	3300010048	Tropical Forest Soil	MEDATMGSTFDIFKATVNGPLWVEAVQGLREAKERMARLALTSPDEYFLHSQETGIVARTGQEWAD
Ga0126373_113084902	3300010048	Tropical Forest Soil	MESVVGSTFDIFKETSDGPLWVEAIQGLGEAKQRMAYLVLIYPAEYFIHSQEDGVVARQSEGRAKSS*
Ga0126373_126015171	3300010048	Tropical Forest Soil	MEDATMGSTFDIFKATVNGPLWVEAVQGLRKAKERMARLALTSPGEYFLHSQENGIVARTGQEWADVL*
Ga0099796_101463523	3300010159	Vadose Zone Soil	QLWMENATMSSTYDIFKVTSDGPLWVKAVPGGLVRAKEQMAHLALTSPEEYFVHCQEQGVIAKQSPNLLEEIS*
Ga0126378_101712633	3300010361	Tropical Forest Soil	MMGSTFDIFKETSEGPIWVEAIRGREEAKEGMAHLVLISPAEYFIHSQEEGVIARAPSVSK*
Ga0126381_1000766341	3300010376	Tropical Forest Soil	VGSTFDIFKETPDGPLWVEAIQGLREAKERMAHVVLIYPAEYFIHSQEDGVVARQSEPRAKST*
Ga0126381_1038418161	3300010376	Tropical Forest Soil	MRMMRSMEDATMGSTFDIFKATVNGPLWVEAVQGLRKAKERMARLALTSPGEYFLHSQENGIVA
Ga0137362_108851933	3300012205	Vadose Zone Soil	TDGQSMEDATMGSMFDIFKVTSDGPLWVEVVHGLEEARERMARLLLTSPGEYFIHSQEQGVVAKQTQEFLEE*
Ga0137360_109761921	3300012361	Vadose Zone Soil	MEDATMDSTFDIFKVTSDGPLWVDVVHGLEKAKEQMARLALTSPGEYFVHCQEQGVIAKQTDESLEEIT*
Ga0137398_103006612	3300012683	Vadose Zone Soil	MEDATMDSTFDIFKVTSDGPLWVDVVHGLEKAKEQMARLALTSPGAYFVHCQEQGVIAKQTDESLEEIT*
Ga0137395_109686901	3300012917	Vadose Zone Soil	MEDATMGSTFDIFKVTSDGPLWVEAVQGLEKAKEQMAHLALSSPGEYFIHSQEEGVIA
Ga0126369_134939881	3300012971	Tropical Forest Soil	MEDATMGSTFDIFKATVNGPLWVEAVQGLGEAKERMARLALTSPGEYFIHSQEKGVVARRAEEWADVL*
Ga0182035_108999673	3300016341	Soil	MMGSTFDIFRVTSEGPLWVEAILGLSEAKEWMAVLVLTSPGEYFIHSQGEGVVAKRTSW
Ga0182032_104138741	3300016357	Soil	MMGSTFDIFKATVNGPLWVEAVQGLREAKERMSRLALTSPGEYFLHSQENGIVARQGQEWADVL
Ga0182034_110931092	3300016371	Soil	MMGSTFDIFKATVNGPLWVEAVQGLREAKERMSRLALTSPGEYFLRSQENGIVATQARNGPMSSD
Ga0182039_101085675	3300016422	Soil	AMMGSTFDIFRVTSEGPLWVEAILGLSEAKEWMAVLVLTSPGEYFIHSQGEGVVAKRTSWKL
Ga0187815_102836222	3300018001	Freshwater Sediment	MGSTYDIFKVTPDGPLWVEAVRGLREAKERMARLALTFPGEYFLHSQGNVVAKLVPEWAEVT
Ga0179592_101414432	3300020199	Vadose Zone Soil	MDSTFDIFKVTSDGPLWVDVVHGLEKAKEQMARLALTSPGAYFVHCQEQGVIAKQTDESLEEIT
Ga0210407_101554733	3300020579	Soil	MDSTFDIFKVTSDGPLWVEAVEGLEKAKDRMAQLALTSPGEYFIHSQDIGVVAKQKQDYLEEIS
Ga0210407_106174222	3300020579	Soil	MDSTFDIFKVTSDGPLWVEAVQGLEKAKERMADLALTSPAEYFIHCQEQGVIAKQSHDFLEEIS
Ga0210403_108847332	3300020580	Soil	MGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQRQNYLEEIS
Ga0210403_110002731	3300020580	Soil	MDSTFDIFEITSDGPLWVEAVQGLEKAKERMADLALTSPAEYFIHCQEQGVIAKQSHDFLEEI
Ga0210399_100249364	3300020581	Soil	MPFGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAKQSQELLEEIS
Ga0210395_104424752	3300020582	Soil	MPFGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAKQSQEFLEEIS
Ga0210401_1000207515	3300020583	Soil	MGSTFDIFKVTSDGPLWVEVVQGLERAKARMADLALTSPGEYFVHCQDQGVIAKQSPNCLEEMS
Ga0210401_108552391	3300020583	Soil	SPDRHGRSDVDATMDSTFDIFKITSDGPLWIEAVPGLEGAKARMSDLALTSPGEYFIHCQGQGVVAKQSQELLEEIS
Ga0210406_102382973	3300021168	Soil	MDSTFDIFEITSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQRQNYLEEIS
Ga0210406_106167172	3300021168	Soil	TDADEVTEDATMDSTFDIFKITSDGPLWIEAVPGLEGAKARMSDLALTSPGEYFIHCQGQGVVAKQSQELLEEIS
Ga0210405_106733831	3300021171	Soil	MPLGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAKQSQEFLEE
Ga0210408_103220531	3300021178	Soil	MGSTFDIFKVTSDGPLWVEAVQGLERAKARMADLALTSPGEYFVHCQDQGVIAKQSQEFLDEIS
Ga0210387_100194255	3300021405	Soil	MMGSTFDIFRVTSDGPVWVEAVQGLEKAKARMADLALTSPGEYFIHCQDQGVIAKQSQEFLEEIL
Ga0210386_107922662	3300021406	Soil	MPFGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVVAKQSQELLEEISRLRFAP
Ga0210383_103010074	3300021407	Soil	MDSTFDIFKVTSDGPLWVEAVQGLEKAKERMADLALTSPAEYFIHCQEQGVI
Ga0210394_1000390910	3300021420	Soil	MDSIYDIFKVTSNGPLWIEAVPGLERAKEQMAYLVLTSPGEYFIHSQEHGVIAKQTQEFLEEIP
Ga0210394_117439931	3300021420	Soil	ITSDGPLWIEAVPGLEGAKARMSDLALTSPGEYFIHCQGQGVVAKQSQELLEEIS
Ga0210384_103775041	3300021432	Soil	MPFGIGNANEATAVLTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLEGAKARMSDLALTSPGEYFIHCQGQGVVAKQSQELLEEIS
Ga0126371_100543027	3300021560	Tropical Forest Soil	MMGSTFDIFKATVNGPVWVEAVQGLKEAKERMARLALTSPGEYFLHSQENGIVARQAEEWADVL
Ga0126371_101512413	3300021560	Tropical Forest Soil	MDSIFDIFKVMPDGPLWVEAVPGLDRAKERMARLALSSPGEYFIHSQEEGVIAKQTQEFLEEIP
Ga0126371_107075391	3300021560	Tropical Forest Soil	VGSTFDIFKEAPDGPLWVEAIQGLREAKERMAHVVLIYPAEYFIHSQEDGVVARQSEGRAKSS
Ga0126371_107356352	3300021560	Tropical Forest Soil	MGSTFDIFRVTSEGPLWVEAILGLSEAKERMAVLVLTSPGEYFIHSQGEGVVAKQTSWKL
Ga0212123_1000453830	3300022557	Iron-Sulfur Acid Spring	MDSTFDIFKVTSHGPLWVEAVQGLERAKEQMARLALTFPGEYFIHSQEEGVVAPNRPKSFWKKYHD
Ga0207700_101368653	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMGSTFDIFKITSDGPPWVEAVQGLEKAKERMAHLALTSSEEYFIHSPDSGVVAKQTQEYLEEIT
Ga0207664_101647924	3300025929	Agricultural Soil	VESDMHASTARVTSMEDAMMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSSEEYFIHSQDNGVVAKRTQEYLEEIT
Ga0179587_101446962	3300026557	Vadose Zone Soil	MEDATMDSTFDIFKVTSDGPLWVDVVHGLEKAKEQMARLALTSPGAYFVHCQEQGVIAKQTDESLEEIT
Ga0209325_10340891	3300027050	Forest Soil	NANETKAVPTDMDEAIEDATMGSTFDIFKVTLDGPLWVEAVRGLEKAKARMADLALTSPGEYFVHCQDQGVIAKQSQEFLEEIS
Ga0209325_10376881	3300027050	Forest Soil	MEDATMGSTFDIFKMTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS
Ga0209729_10037282	3300027061	Forest Soil	MGSTFDIFKMTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS
Ga0209214_10436492	3300027071	Forest Soil	KVTLDGPLWVEAVRGLEKAKARMADLALTSPGEYFVHCQDQGVIAKQSQEFLEEIS
Ga0209214_10565461	3300027071	Forest Soil	MHASTARVTSMEDAMMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSSEEYFIHSQDSGVVAKQTQEYLEEIT
Ga0208860_10405051	3300027076	Forest Soil	VPTDTDEATEDATMGSTFDIFKVTSDGPLWVEAVRGLERAKARMADLALTSPGEYFVHCQDQGVIAKQSAKQSQEFLEEIS
Ga0209215_10207743	3300027266	Forest Soil	VDSTFDIFKVTSDGPLWVEAVQGLEKAKERTAQLALASPGEYFIHSQEQGVIAKQAHEF
Ga0209731_10600122	3300027326	Forest Soil	MEDATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEDGVVAKQTQE
Ga0209418_10604642	3300027371	Forest Soil	MGSTFDIFKVTSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQTQEYLEEIS
Ga0209329_10060022	3300027605	Forest Soil	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEDGVVAKQTQEFLEEIS
Ga0209580_101484302	3300027842	Surface Soil	MDSIYDIFKVTSNGPLWIEAVPGLERAKEQMAYLALTSPGEYFIHSQEHGVIAKQTQEFLEEIP
Ga0209580_102743383	3300027842	Surface Soil	MGSTFDIFKVTSDGPLWVEAVQALETAKKQMTRLALTSPGEYFIHSQEQGVISKQTQEFSEDIV
Ga0209579_101217092	3300027869	Surface Soil	MDSTFDIFKITSDGPLWVEAVEGLEKAKERMAQLALTSPGEYFIHSHDNGVVAKQTREYLEEIT
Ga0209380_105495632	3300027889	Soil	VTAVPTDTDEAMEDATMDSTFDIFKITSDGPLWIEAVPGLERAKARMADLALTSPGEYFIHCQGQGVIAEQSQEFLEEIS
Ga0137415_108058283	3300028536	Vadose Zone Soil	KVTSDGPLWVDVVHGLEKAKEQMARLALTSPGAYFVHCQEQGVIAKQTDESLEEIT
Ga0075388_115825561	3300030848	Soil	MHASTVRVTSMEDAMMGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDTGVVAKQTQEYLEEIP
Ga0170834_1006298432	3300031057	Forest Soil	RQLWMEDAKMGSIYDIFKVTSDGPLWVEAVQGLERAKEQMARLALVSPAEYFIHSQEQGVVAKQTQEFLEELS
Ga0170834_1040231271	3300031057	Forest Soil	MGSIYDIFKVTSDGPLWVEAVPGLERAKEQMAHLSLTSPGEYFIHSQEQGVVAKQTQEFLEEIS
Ga0170834_1056233553	3300031057	Forest Soil	MDSTFDVFKVSSDGPLWVEAVRGLERAKERMAHLALTSPGEYFIHSQEEGVIAKQTEASLEELT
Ga0170834_1092198761	3300031057	Forest Soil	MGSTFDIFKVTSDGPLWVKVVHGLEEAKEQMAHLALTSPGEYFIHSQDKGVVAKQTQEFLEEIS
Ga0170834_1102608841	3300031057	Forest Soil	MKATAVPTDANDTSMEDATMGSTFDIFKVTSDGPLWVEAVRNLERAKERMAHLALISPGEYFIHSQDTGVVAKQTQEYLEEIP
Ga0170823_152311203	3300031128	Forest Soil	PLMDSIFDVFKVSSDGPLWVEAVRGLERAKERMAHLALTSPGEYFIHSQEEGVIAKQTEASLEELT
Ga0170823_175866061	3300031128	Forest Soil	MGSTFDIFKVTSDGPLWVEAVRNLERAKERMAHLALISPGEYFIHSQDTGVVAKQTQEYLEEIP
Ga0170824_1126489501	3300031231	Forest Soil	MDSTFDIFKATSDGPLWVEAVQGLEKAKERMARLALISPAEYFIHSQDYGVVAKLTQEYLEEIS
Ga0170824_1146730981	3300031231	Forest Soil	MDSTFDIFKMTSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQRQDYLEEIS
Ga0170824_1187545253	3300031231	Forest Soil	MGSTFDIFKVTSDGPLWAKVVHGLEEAKEQMAHLALTSPGEYFIHSQDYGVVAKQTQEFLEEIT
Ga0170824_1224553642	3300031231	Forest Soil	MDSIFDIFKVTSDGPLWVEAVQGLEEAKEQMARLALISPAEYFIHSQDYGVVAKQTQVYLEEIP
Ga0170820_134638962	3300031446	Forest Soil	MDSTFDIFKVTSDGPLWVETVQGLEKAKEQMARLALISPAEYFIHSQGYGVVAKQTQAFLEETP
Ga0170818_1123653162	3300031474	Forest Soil	MGSTFDIFKVTSDGPLWAKVVHGLEEAKEQMAHLALTSPGEYFIHSQDYGVVAKQTQEFLGEITWFAQ
Ga0307483_10170723	3300031590	Hardwood Forest Soil	MEDATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTREFWEEIS
Ga0307476_103915071	3300031715	Hardwood Forest Soil	MGCTFDIFKVTSHGPLWVEAVQGLEGAKEKMARLALTFPGEYFIHSQEEGVVAKQTQEFLEEIS
Ga0307474_1001230210	3300031718	Hardwood Forest Soil	MDSTFDIFKATVGGPVWVEAVQGLREAKERMAQLAWTSPGEYFIHSQEKGIVARQAEVSVCGSDANQE
Ga0307469_101017734	3300031720	Hardwood Forest Soil	MGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSSEEYFIDSQDSGVVAKQTQEYLEEIT
Ga0307469_102431064	3300031720	Hardwood Forest Soil	MGSTFDIFKVTSEGALWVEAVQGLEKAKERMAHLALTSPGEYFIHSQDIGVVAKQTQDYLEEML
Ga0307469_107157073	3300031720	Hardwood Forest Soil	MGSTFDIFKVTSDGPLWVEAVQGLERAKARMADLALTSPGEYFVHCQDQGVIAKQSQDFLEELS
Ga0306918_101286742	3300031744	Soil	MGSTFDIFRVTSEGPLWVEAILGLSEAKEWMAVLVLTSPGEYFIHSQGEGVVAKRTSWKL
Ga0307477_105291972	3300031753	Hardwood Forest Soil	ITSDGPLWVEAVQGLEKAKERMAHLALTSPGKYFIHSQDIGVVAKQRQDYLEEIS
Ga0307477_108187831	3300031753	Hardwood Forest Soil	MGSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPEEYFIHSQDNGVIAKQTQEYLEEIT
Ga0307477_110007181	3300031753	Hardwood Forest Soil	STFDIFKVTSDGPLWVEAVQGLEKAKERMAHLALTSPDEYFIHSQEQGVVAKQTQEFVEEQWQF
Ga0307475_100087441	3300031754	Hardwood Forest Soil	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVA
Ga0307475_100311225	3300031754	Hardwood Forest Soil	MDSTFDIFKVTSDGPLWVEAVQGLEKAKERMAHLALTSPDEYFIHSQEQGVVAKQTQEFVEEQWQF
Ga0307475_1005101311	3300031754	Hardwood Forest Soil	MEDATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAK
Ga0307475_106139132	3300031754	Hardwood Forest Soil	MTGSTFDIFKETSDGPVWVEAIQGLGEAKERMAYLVLISPAEYFIHSQEEGVVARRSEA
Ga0307475_106453422	3300031754	Hardwood Forest Soil	MGSTFDIFKVTSDGPLWVEAVQGLEKAKERIADLALTSRGQYFIYSQEQGVVAKQTQEFLEEIS
Ga0307475_107355551	3300031754	Hardwood Forest Soil	MEDATMGSTFDVFKVTSNGPLWVEAVRGLDRAKERMAHLALTSPGEYFIHSQDNGVVAKQTQEFLEEIS
Ga0307475_107378312	3300031754	Hardwood Forest Soil	MQTNRQESRQIRTKQSMEDATMGSTFDIFKVTSDGPLWVGAVQGLEKAKEQMAHLALTSPGEYFVHSQQQGVVAKQKQEFLEEIS
Ga0307475_110811951	3300031754	Hardwood Forest Soil	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTQEFLEEIA
Ga0307475_113602662	3300031754	Hardwood Forest Soil	MQTKRAVPTDVDEVVNEGATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTREFLEEIS
Ga0307473_103762061	3300031820	Hardwood Forest Soil	MEDATMGSTFDIFKVTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS
Ga0310917_103509583	3300031833	Soil	DIFRVTSEGPLWVEAILGLSEAKEWMAVLVLTSPGEYFIHSQGEGVVAKRTSWKL
Ga0306919_104947162	3300031879	Soil	MDSIFDIFKVMSDGPLWVEAVPGLDRAKERMARLALSSPGEYFIHSQEEGVIAKQTQEFLEEIP
Ga0306921_100435439	3300031912	Soil	MMGSTFDIFRVTSEGPLWVEAILGLSEAKEWMAVLVLTSPGEYFIHSQGEGVVAKRTSWK
Ga0306921_121391812	3300031912	Soil	MGSTFDIFRVTSDGPLWVEAIHGLREAKERMAHLALTSPGEYFIHSQEEGVIATQTDESLEELT
Ga0307479_100833576	3300031962	Hardwood Forest Soil	MGSTFDVFKVTSNGPLWVEAVRGLDRAKERMAHLALTSPGEYFIHSQDNGVVAKQTQEFLEEIS
Ga0307479_101016925	3300031962	Hardwood Forest Soil	MGSTFDIFKVTSDGPLWVEAVQGLEKAKEQMAHLALSSPGEYFIHSQEEGVIAKQTQEFL
Ga0307479_101573292	3300031962	Hardwood Forest Soil	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTREFWEEIS
Ga0307479_102102661	3300031962	Hardwood Forest Soil	MQTKRAVPTDVDEVVNEGATMGSTFDIFKVTSHGPLWVEAVQGLERAKEKMARLALTFPGEYFIHSQEEGVVAKQTRE
Ga0307479_108457281	3300031962	Hardwood Forest Soil	MGSTFDIFKVTSHGPLWVEAVQGLERAKEKIARLALTFPGEYFIHSQEDGVVAKQTQEFLGEI
Ga0306922_110759442	3300032001	Soil	MMGSTFDIFKATVNGPLWVEAVQGLREAKERMSRLALTSPGEYFLHSQENGIVA
Ga0307470_102530203	3300032174	Hardwood Forest Soil	VDGGMPPMDSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPEEYFIHSQDSGVVAKQTQEYLEEIP
Ga0307471_1000698366	3300032180	Hardwood Forest Soil	MGSTFDIFKVTSDGPLWVDAVQGLEKAKEQMARLALASPGEYFVYSQEQGVVAKQTQEFLEEIS
Ga0307471_1001876822	3300032180	Hardwood Forest Soil	MMDSTFDIFKITSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHCQEQGVIAKQSQDFLEEIS
Ga0307471_1001912176	3300032180	Hardwood Forest Soil	MDSTFDIFKVTSDGPLWVEAVQGLEKAKERMAHLALTSPEEYFIHSQDSGVVAKQTQEYLEEIP
Ga0307471_1037132892	3300032180	Hardwood Forest Soil	TSDGPLWVEAVQGLEKAKERMAHLALTSPGEYFIHSQEQGVVAKRTQEFVEERGQF
Ga0307472_1002546124	3300032205	Hardwood Forest Soil	MGSTFDIFKVTSDGPLWVEAVQGLEKAKKRMAHLVLTSPGEYFIHCQEQDVIAKQSQDFLEEIS
Ga0307472_1007753972	3300032205	Hardwood Forest Soil	MDSTFDIFKITSDGPLWVEAVQGLEKAKERMVHLALTFSGEYFIHSQDSGVVAKQAQEYLEEIT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059708

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences