Metagenome / Metatranscriptome Family F060153

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060153
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	103 residues
Representative Sequence	MTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWNNGGIPIIGPLFGAVSAPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL
Number of Associated Samples	91
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	53.79 %
% of genes near scaffold ends (potentially truncated)	36.84 %
% of genes from short scaffolds (< 2000 bps)	84.21 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.398 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.045 % of family members)
Environment Ontology (ENVO)	Unclassified (36.090 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.910 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 8.96% β-sheet: 10.45% Coil/Unstructured: 80.60%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF13561	adh_short_C2	40.60
PF13649	Methyltransf_25	4.51
PF00291	PALP	3.76
PF08241	Methyltransf_11	3.01
PF03466	LysR_substrate	2.26
PF12847	Methyltransf_18	1.50
PF00126	HTH_1	1.50
PF00106	adh_short	0.75
PF07690	MFS_1	0.75
PF01609	DDE_Tnp_1	0.75
PF02669	KdpC	0.75
PF04055	Radical_SAM	0.75
PF09424	YqeY	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2156	K+-transporting ATPase, KdpC subunit	Inorganic ion transport and metabolism [P]	0.75
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.75
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.75
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.75
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.75
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.75
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.40 %
Unclassified	root	N/A	40.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.26 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.54 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.26 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.26 %
Leptospirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales	0.75 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.26 %
Leptospiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae	0.75 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.76 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.50 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	0.75 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	3.76 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.75 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	0.75 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	3.76 %
Klebsiella michiganensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella michiganensis	0.75 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.75 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.60 %
Pseudonocardia sp. ICBG1293	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	3.76 %
Klebsiella michiganensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella michiganensis	0.75 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.75 %
Leptospira	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10061360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300001546\|JGI12659J15293_10003287	All Organisms → cellular organisms → Bacteria → Proteobacteria	4893	Open in IMG/M
3300001593\|JGI12635J15846_10017919	All Organisms → cellular organisms → Bacteria → Proteobacteria	5867	Open in IMG/M
3300001593\|JGI12635J15846_10386388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	848	Open in IMG/M
3300002245\|JGIcombinedJ26739_100013574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6761	Open in IMG/M
3300002245\|JGIcombinedJ26739_100045217	All Organisms → cellular organisms → Bacteria	3984	Open in IMG/M
3300002245\|JGIcombinedJ26739_100081265	All Organisms → cellular organisms → Bacteria	3010	Open in IMG/M
3300002245\|JGIcombinedJ26739_100191358	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300002245\|JGIcombinedJ26739_101619602	Not Available	545	Open in IMG/M
3300004092\|Ga0062389_101261954	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300004092\|Ga0062389_102963595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella michiganensis	635	Open in IMG/M
3300004635\|Ga0062388_102719829	Not Available	521	Open in IMG/M
3300005436\|Ga0070713_100786153	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300005437\|Ga0070710_10693349	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300005534\|Ga0070735_10047773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2850	Open in IMG/M
3300005602\|Ga0070762_10128913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1494	Open in IMG/M
3300005602\|Ga0070762_10323899	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300005610\|Ga0070763_10320273	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300005610\|Ga0070763_10448267	Not Available	732	Open in IMG/M
3300005614\|Ga0068856_102397547	Not Available	535	Open in IMG/M
3300005712\|Ga0070764_10348586	Not Available	865	Open in IMG/M
3300006176\|Ga0070765_100889863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	842	Open in IMG/M
3300009093\|Ga0105240_10134002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2968	Open in IMG/M
3300009545\|Ga0105237_10166535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2203	Open in IMG/M
3300009551\|Ga0105238_12001529	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300009633\|Ga0116129_1002784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8717	Open in IMG/M
3300010147\|Ga0126319_1487265	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010154\|Ga0127503_10684569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	573	Open in IMG/M
3300010154\|Ga0127503_10814784	Not Available	890	Open in IMG/M
3300010864\|Ga0126357_1275317	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300010865\|Ga0126346_1272756	Not Available	596	Open in IMG/M
3300010869\|Ga0126359_1576616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1402	Open in IMG/M
3300010880\|Ga0126350_10398357	Not Available	1223	Open in IMG/M
3300011120\|Ga0150983_14126540	Not Available	588	Open in IMG/M
3300011404\|Ga0153951_1020869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1118	Open in IMG/M
3300011418\|Ga0153954_1006456	All Organisms → cellular organisms → Bacteria	3873	Open in IMG/M
3300012090\|Ga0153956_1082196	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300012154\|Ga0153953_1043972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	856	Open in IMG/M
3300012469\|Ga0150984_100921727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	579	Open in IMG/M
3300012988\|Ga0164306_10919768	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300013104\|Ga0157370_10858683	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300014968\|Ga0157379_11483783	Not Available	659	Open in IMG/M
3300015206\|Ga0167644_1063685	Not Available	1245	Open in IMG/M
3300015206\|Ga0167644_1118885	Not Available	741	Open in IMG/M
3300019166\|Ga0184595_107870	Not Available	526	Open in IMG/M
3300019167\|Ga0184571_109636	Not Available	522	Open in IMG/M
3300019187\|Ga0184584_126584	Not Available	503	Open in IMG/M
3300020069\|Ga0197907_10147278	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300020081\|Ga0206354_11107017	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300020581\|Ga0210399_11127466	Not Available	626	Open in IMG/M
3300020582\|Ga0210395_10360556	All Organisms → cellular organisms → Bacteria → Proteobacteria	1093	Open in IMG/M
3300020582\|Ga0210395_11394706	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300021151\|Ga0179584_1503374	Not Available	528	Open in IMG/M
3300021171\|Ga0210405_10931723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	658	Open in IMG/M
3300021180\|Ga0210396_10664770	Not Available	902	Open in IMG/M
3300021181\|Ga0210388_11109558	Not Available	675	Open in IMG/M
3300021286\|Ga0179583_1028291	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300021401\|Ga0210393_10980996	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300021401\|Ga0210393_11249043	Not Available	597	Open in IMG/M
3300021401\|Ga0210393_11444275	Not Available	549	Open in IMG/M
3300021404\|Ga0210389_10529544	Not Available	927	Open in IMG/M
3300021405\|Ga0210387_11404169	Not Available	600	Open in IMG/M
3300021407\|Ga0210383_10602912	Not Available	947	Open in IMG/M
3300021433\|Ga0210391_10173107	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300021433\|Ga0210391_10372986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1120	Open in IMG/M
3300021474\|Ga0210390_10480243	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300022532\|Ga0242655_10263011	Not Available	550	Open in IMG/M
3300022724\|Ga0242665_10250343	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300022726\|Ga0242654_10439075	Not Available	507	Open in IMG/M
3300023544\|Ga0247542_105721	Not Available	525	Open in IMG/M
3300023660\|Ga0247550_103870	Not Available	557	Open in IMG/M
3300025588\|Ga0208586_1013696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2035	Open in IMG/M
3300025898\|Ga0207692_10349954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	911	Open in IMG/M
3300025913\|Ga0207695_10759279	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300027505\|Ga0209218_1064126	Not Available	751	Open in IMG/M
3300027559\|Ga0209222_1022187	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300027855\|Ga0209693_10267784	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300027879\|Ga0209169_10238626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300027879\|Ga0209169_10287023	Not Available	864	Open in IMG/M
3300027884\|Ga0209275_10354459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	822	Open in IMG/M
3300027889\|Ga0209380_10024551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3402	Open in IMG/M
3300027895\|Ga0209624_10000455	All Organisms → cellular organisms → Bacteria	35993	Open in IMG/M
3300027895\|Ga0209624_10001898	All Organisms → cellular organisms → Bacteria → Proteobacteria	15944	Open in IMG/M
3300027895\|Ga0209624_10051330	All Organisms → cellular organisms → Bacteria → Proteobacteria	2641	Open in IMG/M
3300027895\|Ga0209624_10530048	Not Available	783	Open in IMG/M
3300027895\|Ga0209624_11045857	Not Available	527	Open in IMG/M
3300027908\|Ga0209006_10061565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3356	Open in IMG/M
3300027908\|Ga0209006_10096126	All Organisms → cellular organisms → Bacteria → Proteobacteria	2629	Open in IMG/M
3300027908\|Ga0209006_10097513	Not Available	2608	Open in IMG/M
3300027908\|Ga0209006_10643326	Not Available	872	Open in IMG/M
3300027908\|Ga0209006_11186944	Not Available	597	Open in IMG/M
3300027986\|Ga0209168_10321880	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300030007\|Ga0311338_11369759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	660	Open in IMG/M
3300030503\|Ga0311370_12343080	Not Available	519	Open in IMG/M
3300030568\|Ga0257206_1110219	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300030568\|Ga0257206_1140008	Not Available	524	Open in IMG/M
3300030611\|Ga0257182_1246265	Not Available	573	Open in IMG/M
3300030611\|Ga0257182_1266598	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300030612\|Ga0257196_1107784	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → Leptospira	893	Open in IMG/M
3300030612\|Ga0257196_1378398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	514	Open in IMG/M
3300030612\|Ga0257196_1389192	Not Available	506	Open in IMG/M
3300030758\|Ga0138305_1066266	Not Available	539	Open in IMG/M
3300030758\|Ga0138305_1525168	Not Available	520	Open in IMG/M
3300030758\|Ga0138305_1550662	Not Available	523	Open in IMG/M
3300030811\|Ga0265735_104462	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300030840\|Ga0074020_11290183	Not Available	555	Open in IMG/M
3300030907\|Ga0074013_11898747	Not Available	790	Open in IMG/M
3300030942\|Ga0247549_104076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	559	Open in IMG/M
3300030999\|Ga0074019_11055927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300031231\|Ga0170824_122111495	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300031234\|Ga0302325_13339395	Not Available	508	Open in IMG/M
3300031446\|Ga0170820_16959300	Not Available	622	Open in IMG/M
3300031474\|Ga0170818_103504549	Not Available	1260	Open in IMG/M
3300031525\|Ga0302326_10423260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2054	Open in IMG/M
3300031525\|Ga0302326_12609484	Not Available	630	Open in IMG/M
3300031708\|Ga0310686_100282599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2704	Open in IMG/M
3300031708\|Ga0310686_107144964	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300031708\|Ga0310686_108264883	Not Available	1357	Open in IMG/M
3300031866\|Ga0316049_115752	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300031866\|Ga0316049_118230	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031938\|Ga0308175_100671937	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300031939\|Ga0308174_10584956	Not Available	922	Open in IMG/M
3300032515\|Ga0348332_10405992	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300032515\|Ga0348332_10483218	Not Available	1053	Open in IMG/M
3300032515\|Ga0348332_10752317	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300032515\|Ga0348332_10930017	Not Available	636	Open in IMG/M
3300032515\|Ga0348332_12392738	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300032515\|Ga0348332_12795826	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300032515\|Ga0348332_13207271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. ICBG1293	545	Open in IMG/M
3300032515\|Ga0348332_13769067	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300032515\|Ga0348332_14685233	Not Available	842	Open in IMG/M
3300032739\|Ga0315741_11008110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.71%
Host-Associated	Host-Associated	14.29%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.70%
Aquatic	Environmental → Aquatic	6.02%
Plants	Host-Associated → Plants	6.02%
Human	Host-Associated → Human	5.26%
Fungi	Host-Associated → Fungi	3.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.17%
Plant Litter	Environmental → Terrestrial → Plant Litter	6.77%
Freshwater	Environmental → Aquatic → Freshwater	6.02%
Digestive System	Host-Associated → Human → Digestive System	5.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.26%
Peat	Environmental → Terrestrial → Peat	3.76%
Mycelium	Host-Associated → Fungi → Mycelium	3.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.11%
Loam	Environmental → Terrestrial → Soil → Loam	27.07%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	6.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.76%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	3.01%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.05%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	6.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.01%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	3.01%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.27%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	6.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	5.26%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.01%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.01%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	3.01%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.01%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.50%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.50%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011404	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG	Host-Associated	Open in IMG/M
3300011418	Attine ant fungus gardens microbial communities from Florida, USA - TSFL038 MetaG	Host-Associated	Open in IMG/M
3300012090	Attine ant fungus gardens microbial communities from Florida, USA - TSFL040 MetaG	Host-Associated	Open in IMG/M
3300012154	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ037 MetaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300019166	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019167	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019187	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023544	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023660	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030568	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF3-1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300030611	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Bitterroot National Forest, Montana, United States - GP1-1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300030612	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-1 (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300030758	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030811	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030840	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 8 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030907	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Wood TCEFB (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030942	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030999	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - LB 7 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032739	Forest Soil Metatranscriptomics Site 2 LB Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100613602	3300001471	Forest Soil	MSRLALLSTAVSLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPNYNGPMNGGIPIIGPLFGMVTGNGWQSGPACGLYHDFNGRYTSVCGL*
JGI12659J15293_100032875	3300001546	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWSNGIPIIGPLFGAATAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL*
JGI12635J15846_100179192	3300001593	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNSGIPIVGPLFSAVTAPIAMTTSGGWAQSGPACGLYHDFNGRYTSVCGL*
JGI12635J15846_103863881	3300001593	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGQIGNPNYGGGWSNGGIPIIGPLFGAVTTPIAMATGNGWVQSGPACGLYHDFNGRYTSVCGL*
JGIcombinedJ26739_1000135745	3300002245	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWNNGIPIIGPLFGAATAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL*
JGIcombinedJ26739_1000452174	3300002245	Forest Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWNNGIPIVGPLFGAVTSPISMATGNGWQSGPACGLYHDFNGRYTSVCGL*
JGIcombinedJ26739_1000812653	3300002245	Forest Soil	MSRLALLATAVALILGATPVLAQTFSDYNGNDAVVTREQGNTAAVGQVGNPNYGGWNNGIPVIGPLFGAVTSPVAMATGGGWARSGPACGLYHDFNGRYTSVCGL*
JGIcombinedJ26739_1001913582	3300002245	Forest Soil	MSRLALLSTAISLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPSYNRPMNGGIPIIGPLFGMVTAPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL*
JGIcombinedJ26739_1016196021	3300002245	Forest Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL*
Ga0062389_1012619542	3300004092	Bog Forest Soil	MSRLALLATAVTLTLGSTPVLAQTFSDYNGKDSVATREQGNTAAVGSVGNPNYNGGWNNGGIPIIGPLFGAVTSPVAMATGNRWQSGPACGLYHDFNGRYTSVCGL*
Ga0062389_1024771902	3300004092	Bog Forest Soil	YNGKDTVATREQGNTAAVGTVGNPNYNNSWNNGIPIIGPLFGAVAAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL*
Ga0062389_1029635951	3300004092	Bog Forest Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTAPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL*
Ga0062388_1027198291	3300004635	Bog Forest Soil	MSRLALLATAVSLTLGATPVLAQTFSSYNGNDTVATREQGNTAAVGTVANPNMNGWNNGPPIIGPVFGVISAPFAMATGNGWTQTGPACGLYHDFNGR
Ga0070713_1007861532	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSALLLAAVSLPLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0070710_106933491	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSALLSAAVSLSLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPA
Ga0070735_100477734	3300005534	Surface Soil	MSRLALLSTAVSLTLVATPVLAQTFSDYNGNDTVATKAQGNTDAVGTPYFNGWNNGPPVIGPVLGVLTAPFAVATGGWGQPNPSCGLYHDFNGRYTSLCRM*
Ga0070762_101289132	3300005602	Soil	MSRSTFLSAVVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWSNGGIPIVGPLFGTVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL*
Ga0070762_103238992	3300005602	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNSNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL*
Ga0070763_103202732	3300005610	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL*
Ga0070763_104482672	3300005610	Soil	MTRLALLATTVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNSGIPIVGPLFGAVTAPIAMTTSGGWSQSGPACGLYHDFNGRYTSVCGL*
Ga0068856_1023975471	3300005614	Corn Rhizosphere	VSLSLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0070764_103485862	3300005712	Soil	MSRLALLSTAISLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPSYNRPMNGGIPIIGPLFGMVTGNGWQSGPACGLYHDFNGRYTSVCGL*
Ga0070765_1008898632	3300006176	Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTS
Ga0105240_101340023	3300009093	Corn Rhizosphere	MTEDEMSRSALLSAAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0105237_101665353	3300009545	Corn Rhizosphere	MTEDEMSRSALLSAAVSLPLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0105238_120015292	3300009551	Corn Rhizosphere	EDEMSRSALLSAAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0116129_10027847	3300009633	Peatland	MGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNSGIPIVGPLFGAVTAPIAMTTSGGWAQSGPACGLYHDFNGRYTSVCGL*
Ga0126319_14872652	3300010147	Soil	ETKMTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWSNGGIPIIGPLFGAVTSPIAMTTGGGWTQSGPACGLYHDFNGRYTSVCGL*
Ga0127503_106845691	3300010154	Soil	KMTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWRNGGIPIIGPLFGAVTSPIAMTTGSGWTQSGPACGLYHDFNGRYTSVCGL*
Ga0127503_108147842	3300010154	Soil	RLALLSTAVSLGLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLLGAVTAPVAMATGSGWNQGPACGLYHDFNGRYTSVCGL*
Ga0126357_12753171	3300010864	Boreal Forest Soil	MMTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAVTAPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL*
Ga0126346_12727561	3300010865	Boreal Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNSPMNGGLPIIGPLFGAVTMTGNGWQSGPSCGLYHDFNGRYTSVCGL*
Ga0126359_15766161	3300010869	Boreal Forest Soil	VLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYSGPMNGGIPIIGLLFGAVTMTGNGWQSGPACGLYHDFNGRYTSVCGL*
Ga0126350_103983571	3300010880	Boreal Forest Soil	AVSLSLLATPVLAQTFSDNNGNDSVATREQGNTATVGQVGNPNYNGGWNNGIPIVGPLFGAVTSPISMATGNGWQSGPACGLYHDFNGRYTSVCGL*
Ga0150983_141265401	3300011120	Forest Soil	VSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWSNGGIPIVGPLFGTVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL*
Ga0153951_10208691	3300011404	Attine Ant Fungus Gardens	LFAKGLRTHKENVMSRLALLSTAVSLTLIATPAFATFSDYNGNDTVATQEQGNTATVGNIGNPNYGWSNGGIPIIGPLFGAVTSPVSMATGGWARPNPTCGLYHDFNGRYTSLCGL*
Ga0153954_10064565	3300011418	Attine Ant Fungus Gardens	MTLVATPVLAQTFSVDNGNDTVATREQGNTAVSRMAGPNYNGWNNGPPVVGPLFGAVTAPVAMATGGWTQANPSCGLYHDFNGRYTALCGL*
Ga0153956_10821962	3300012090	Attine Ant Fungus Gardens	STAVSMTLVATPVLAQTFSVDNGNDTVATREQGNTAVSRMAGPNYNGWNNGPPVVGPLFGAVTAPVAMATGGWTQANPSCGLYHDFNGRYTALCGL*
Ga0153953_10439722	3300012154	Attine Ant Fungus Gardens	MSRLALLSTAVSLTLIATPAFATFSDYNGNDTVATQEQGNTATVGNIGNPNYGWSNGGIPIIGPLFGAVTAPVTIATGGGWGQPNPGCGVYHD
Ga0150984_1009217272	3300012469	Avena Fatua Rhizosphere	CSSDLNNGGHEMSRFSLISAAIALPLLATPVLAQTFSDYNGNDTVATREQGNTAAVGTVGNPNYNRGWSNGGIPIIGPLFGAATAPVAMATGNNWGQNTNCGLYHDFNGRYTAVCGL*
Ga0164306_109197681	3300012988	Soil	AAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0157370_108586831	3300013104	Corn Rhizosphere	MTEDEMSRSALLSAAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGAVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0157379_114837831	3300014968	Switchgrass Rhizosphere	RSTAPDLGTNEYARRLLRRGITEDEMSRSALLSAAVSLPLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMTTGQGWSQGNPACGLYHDFNGRYTAVCGL*
Ga0167644_10636852	3300015206	Glacier Forefield Soil	MTRLALLSTAVSLSLLATPVLAQTFSAANGNDTAATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAVTAPVAMATGNSWNQGPACGVYHDFNGRYTSVCGL*
Ga0167644_11188852	3300015206	Glacier Forefield Soil	MSRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGVPIIGPLFGAVTAPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL*
Ga0184595_1078702	3300019166	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGQVGNPNYGGGWSNGGIPIIGPLFGAVTAPIAMATGNGWVQSGPACGLYHDFNGRYTSVCGL
Ga0184571_1096361	3300019167	Soil	ENMMTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNSWNSGGIPIIGPLFGAMTAPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0184584_1265842	3300019187	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYGWSNGGIPIVGPLFGAVTAPVAMMTGYGSAPSGPACGLYHDFNGRYTSVCGL
Ga0197907_101472781	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	GTMTEDEMSRSALLSAAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL
Ga0206354_111070171	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	ATMTEDEMSRSALLSAAVSLPLLATPVLAQTFTDSNGNDTVATREQGNTAAVGNVGNPNCSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL
Ga0210399_111274661	3300020581	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGHVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0210395_103605562	3300020582	Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0210395_113947061	3300020582	Soil	AVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWNNGIPIVGPLFGAVTSPISMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0179584_15033741	3300021151	Vadose Zone Soil	MTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWNNGGIPIIGPLFGAVSAPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0210405_109317232	3300021171	Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCEL
Ga0210396_106647702	3300021180	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACSLYHDFNGRYTSVCGL
Ga0210388_111095581	3300021181	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWNNGIPIIGPLFGAATAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0179583_10282911	3300021286	Vadose Zone Soil	MTRLALLSTAVSLSLLATPVLAQTFTAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAATSPVSMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0210393_109809961	3300021401	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0210393_112490431	3300021401	Soil	MSRLAFLSAAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWNNGGIPIIGPMFGAVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0210393_114442751	3300021401	Soil	MTRLALLATAVTLTLGETPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNGGWSNGGIPIIGPLFGAVSSPIAMTGGGWAQSGPACGLYHDFNGRYT
Ga0210389_105295441	3300021404	Soil	TAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0210387_114041691	3300021405	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGHVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0210383_106029122	3300021407	Soil	TFSDYNGKDTVATREQGNTAAVGHVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0210391_101731071	3300021433	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGQVGNPNYGGGWSNGGIPIIGPLFGAVTTPIAMATGNGWVQSGPACGLYHDFNGRYTSVCGL
Ga0210391_103729862	3300021433	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWSNGIPIIGPLFGAATAPVAMTAGGGWAQSGPAC
Ga0210390_104802432	3300021474	Soil	LSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNSNYNGWNGGVPIIGPLFGAMTGPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0242655_102630111	3300022532	Soil	MSRLALLATAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0242665_102503431	3300022724	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAIGHVGNSNYSGWNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0242654_104390751	3300022726	Soil	MTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0247542_1057212	3300023544	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAVTVPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0247550_1038701	3300023660	Soil	ENLMTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGQVGNPNYSGGWSNGGIPIIGPLFGAVTAPIAMATGNGWVQSGPACGLYHDFNGRYTSVCGL
Ga0208586_10136962	3300025588	Arctic Peat Soil	MSRLALLSTAISLSLLATPVLAGTFTDYNGNDTVATVEQGNTAAVGNYHGGNRGGIPIIGPLFGMMMAPVSMATGNGWGQSGGDCGLYHDFTGRYTALCGL
Ga0207692_103499542	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSALLSAAVSLSLLATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTGPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL
Ga0207695_107592792	3300025913	Corn Rhizosphere	MSRSALLSAAVSLPLVATPVLAQTFTDYNGNDTVATREQGNTAAVGNVGNPNYSRWNNGPPIIGPLFGVVTAPVAMATGQGWSQGNPACGLYHDFNGRYTAVCGL
Ga0209218_10641261	3300027505	Forest Soil	TPRDCWNKKKSQGWFAEGRNSEENIMSRLALLATAVALTLGATPVLAQTFSDYNGNDAVVTREQGNTAAVGQVGNPNYGGWNNGIPVIGPLFGAVTSPVAMATGGGWARSGPACGLYHDFNGRYTSVCGL
Ga0209222_10221872	3300027559	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNSGIPIVGPLFSAVTAPIAMTTSGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0209693_102677842	3300027855	Soil	MTRLALLATAVTLTMGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNSGIPIVGPLFGAVTAPIAMTTSGGWSQSGPACGLYHDFNGRYTSVCGL
Ga0209169_102386262	3300027879	Soil	MSRLAFLSAAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWSNGGIPIVGPLFGTVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0209169_102870231	3300027879	Soil	KYGGRKMSRLALLSTAISLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPSYNRPMNGGIPIIGPLFGMVTGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209275_103544592	3300027884	Soil	MSRSTFLSAVVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWSNGGIPIVGPLFGTVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0209380_100245513	3300027889	Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNSNYNGWNGGVPIIGPLFGAMTTPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0209624_100004554	3300027895	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWSNGIPIIGPLFGAATAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0209624_100018988	3300027895	Forest Soil	MSRLALLATAVALTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGEVGNPNYGGWNNGIPIIGPLFGAMTSPVAMATGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0209624_100513302	3300027895	Forest Soil	MSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGGWNNGIPIVGPLFGAVTSPISMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209624_105300481	3300027895	Forest Soil	MSRLALLSTAISLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPSYNGPMNGGIPIIGPLFGMVTGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209624_110458571	3300027895	Forest Soil	PVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYNSSWNNGIPIIGPLFGAATAPVAMTAGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0209006_100615652	3300027908	Forest Soil	MSRLALLSTAVSLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPNYNGPMNGGIPIIGPLFGMVTGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209006_100961263	3300027908	Forest Soil	MTRLALLATAVMLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNTNYSGGLSNGGIPIIGPLFGAVTSPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209006_100975132	3300027908	Forest Soil	MTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGPMNGGLPIIGPLFGAVTMTGNGWQSGPSCGLYHDFNGRYTSVCGL
Ga0209006_106433262	3300027908	Forest Soil	ISLSLLATPVLAGTFTDYNGNDTVATTEQGNTAAVGTVGNPSYNRPMNGGIPIIGPLFGMVTAPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0209006_111869442	3300027908	Forest Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGRNNGIPIVGPLFGAVTSPIAMTTGGGWAQSGPACGLYHDFNGRYTSVCGL
Ga0209168_103218802	3300027986	Surface Soil	MSRLALLSTAVSLTLVATPVLAQTFSDYNGNDTVATKAQGNTDAVGTPYFNGWNNGPPVIGPVLGVLTAPFAVATGGWGQPNPSCGLYHDFNGRYTSLCGM
Ga0311338_113697592	3300030007	Palsa	MSRLALLSAAVSLSLLATPVLAQTFSAPNGNDAVATREQGNTATVGNVGNPNYNGWNSGGIPIIGPMFGAVTAPVAMATGNNWGQTTTSCGLYHDFNGRYTS
Ga0311370_123430801	3300030503	Palsa	MSRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPMFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0257206_11102192	3300030568	Host-Associated	GQNTKENVMSRLTLLSTAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWNGGIPIIGPLFGALTSPVTMATGNGWNQGPNCGLYHDFNGRYTSVCGL
Ga0257206_11400081	3300030568	Host-Associated	GNIMSRLALLSTAVSLALVATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWSNGGIPIIGPLFGAMTAPVSMATGNGWVQSGPACGLYHDFNGRYTSVCGL
Ga0257182_12462651	3300030611	Host-Associated	MSRLALLSTAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGGWNNGIPIIGPLFGALTAPVSMATGNGWQSGPSCGLYHDFNGRYTSVCGL
Ga0257182_12665982	3300030611	Host-Associated	MSRLTLLSTAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWNGGIPIIGPLFGALTSPVTMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0257196_11077841	3300030612	Host-Associated	GRTLGQNTKENVMSRLTLLSTAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYNGWNGGIPIIGPLFGALTSPVTMATGNGWNQGPNCGLYHDFNGRYTSVCGL
Ga0257196_13783982	3300030612	Host-Associated	ENVMSRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGVPIIGPLFGVMTAPVTMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0257196_13891921	3300030612	Host-Associated	MTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGNIGNPNYNGGWNNGGIPIIGPMFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0138305_10662661	3300030758	Soil	MTRLALLATAVTLTIGATPVLAQTFSDYNGNDTVATREQGNTAAVGQYGNPNYNGGSNNVGIPIVGPLFGAVTAPVAMATGNGWNRGPSCGLYHDFNGRYTALCGL
Ga0138305_15251681	3300030758	Soil	MTRLALLATAVTLTLGATPVLAQTFSSYNGNDTVATREQGNTAAVGTVGNPNFAPNNGIPIIGTLFGAATAPVAMATGNGWQSGPACGLYHDFNGRYTSVCGL
Ga0138305_15506621	3300030758	Soil	GQDIKENVMSRLTLLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNNGGIPIIGPLFGAATAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0265735_1044621	3300030811	Soil	MTRLALLATAVTLTLGATPVLAQTFSAPNGNDAVATREQGNTATVGQVGNPNYNGWNSGGVPIIGPMFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0074020_112901831	3300030840	Soil	GMLRLALLSTAVSLTLVATPVIAQTFSDYNGNDTVATREQGNTAAVGQYRTSNYNGWNNGPPVIGPLFGVVTSPLAMATGGWGQSNPTCGLYHDFNGRYTSLCGM
Ga0074013_118987472	3300030907	Soil	LLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAVTAPVAMATGNGWNRPACGLYHDFNGRYTSVCGL
Ga0247549_1040762	3300030942	Soil	ENVMTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAMTAPVAMATGNSWNQGPACGLYHDFNGRYTSVCGL
Ga0074019_110559271	3300030999	Soil	ALLSTAVSLTLVATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNNGPPILGPLFSVVTAPFAMATGGWGQPNPACGLYHDFNGRYTSVCGL
Ga0170824_1221114951	3300031231	Forest Soil	VLAQTFSDYNGKDTVATREQGNTAAVGTVVSPSHNSGWNNGGIPIIGPLFGAVASPVAMATGNGWAQSGPACGLYHDFNGRYTSVCGL
Ga0302325_133393951	3300031234	Palsa	MSRLALLSAAVSLSLLATPVLAQTFSAPNGNDAVATREQGNTATVGNVGNPNYNGWNSGGIPIIGPMFGAVTAPVAMATGNNWGQTTTSCGLYHDFNGRYTSVCGL
Ga0170820_169593001	3300031446	Forest Soil	AQTFSDYNGKDTVGTREQGNTAAVATVVSPSHNSGWKNGGIPIIGPLFGAVASPVAMATGNGWAQSGPACGLYHDFNGRYTSVCGL
Ga0170818_1035045491	3300031474	Forest Soil	VLAQTFSDYNGKDIVATREQGNTAAVGTVVSPSHNSGWNNGGIPIIGPLFGAVASPVAMATGNGWAQSGPACGLYHDFNGRYTSVCGL
Ga0302326_104232603	3300031525	Palsa	MTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGNVGNPNYNGWNNGGIPIVGPLFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0302326_126094841	3300031525	Palsa	RLALLSTAVSLSLLATPVLAQTFTDYNGNDTVATREQGNTAAVGQVGNPNYSGGWNNGIPIIGPLFGALTAPVSMATGNGWQSGPSCGLYHDFNGRYTSVCGL
Ga0310686_1002825993	3300031708	Soil	MSRLALLSAAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGNVGNPNYNGWNNGGIPIVGPLFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTAVCGL
Ga0310686_1071449642	3300031708	Soil	MSRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNSNYSGWNNGIPIIGPVFGVISAPFAMATGNGWAQSGPACGLYHDFNGRYTSVCGL
Ga0310686_1082648831	3300031708	Soil	MTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAMTAPVAMATGNSWNQGPACGLYHDFNGRYTSVCGL
Ga0316049_1157522	3300031866	Soil	MTRLALLATAVTLTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGDVGNPNYHGWNNGGIPIVGPLFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTAVCGL
Ga0316049_1182302	3300031866	Soil	ENVMSRLALLSTAVSLSLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAVTVPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0308175_1006719372	3300031938	Soil	MSRLALLSAAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGDFRGGTYRGWNSGIPIIGPLFGVVTAPVTMATGGWAQPSSGCGLYHDFNGRYTSLCGMM
Ga0308174_105849561	3300031939	Soil	MSRLALLSAAVSLSLLATPVLAQTFSDYNGNDTVATREQGNTAAVGDFRGGTYRGWNSGIPIIGPLFGVVTAPVTMATGGWAQPSSGCGLYHDFNGRYTALCGMM
Ga0348332_104059922	3300032515	Plant Litter	LTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNNGIPIIGPVFGVISAPFAMATGNGWAQSGPACGLYHDFNGRYTSVCGL
Ga0348332_104832181	3300032515	Plant Litter	MTRLALLATAVTLTLGATPVLAQTFSDYNGKDTVATREQGNTAAVGTVGNPNYGWSNGGIPIIGPLFGAVTAPVAMMTGYGSAPSGPACGLYHDFNGRYTSVCGL
Ga0348332_107523173	3300032515	Plant Litter	LTLGATPVLAQTFSDYNGNDTVATREQGNTAAVGDVGNPNYRGWNNGGIPIVGPLFGMVTAPVAMATGNNWGQNPNCGLYHDFNGRYTAVCGL
Ga0348332_109300172	3300032515	Plant Litter	MSRLALLSTAVSLSLLATPVLAQTFTDYNGNDTVATREQGNTAAVGQVGNPNYSGGWNNGIPIIGPLFGALTAPVSMATGNGWQSGPSCGLYHDFNGRYTSVCGL
Ga0348332_123927382	3300032515	Plant Litter	SLLATPVFAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNGGVPIIGPLFGAVTVPVAMATGNGWNQGPACGLYHDFNGRYTSVCGL
Ga0348332_127958261	3300032515	Plant Litter	KKENVMSRLALLSAAVSLSLLGTPVLAQTFSAPNGNDTVATREQGNTATVGNVGNPNYNGWNNGGIPIVGPLFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0348332_132072711	3300032515	Plant Litter	MTRLALLATAVTLTLGATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGVPIIGPMFGMVTAPVAMATGNNWGQNTNCGLYHDFNGRYTSVCGL
Ga0348332_137690672	3300032515	Plant Litter	NMMSRLALLSAAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGNVGNPNYNGGWSNGGIPIIGPMFSMATAPVAMATGNNWGQTTTGCGLYHDFNGRYTSVCGL
Ga0348332_146852332	3300032515	Plant Litter	ENVMTRLALLSTAVSLSLLATPVLAQTFSAPNGNDTVATREQGNTATVGQVGNPNYNGWNSGGIPIIGPLFGAVTAPVAMATGNGWNQGPACGLYQDFNGRYTSVCGL
Ga0315741_110081101	3300032739	Forest Soil	MSRLALLSTAVSLTLVATPVLAQTFSDYNGNDTVATREQGNTAAVGQVGNPNYSGWNNGPPILGPLFSVVTAPFAMATGGWGQPNPACGLYHDFNGRYTSVCGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060153

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences