Metagenome / Metatranscriptome Family F060228

Basic Information
Family ID	F060228
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	39 residues
Representative Sequence	MIAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE
Number of Associated Samples	113
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.64 %
% of genes near scaffold ends (potentially truncated)	44.36 %
% of genes from short scaffolds (< 2000 bps)	73.68 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Most Common Taxonomy
Group	Bacteria (74.436 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.075 % of family members)
Environment Ontology (ENVO)	Unclassified (31.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.865 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.54% β-sheet: 0.00% Coil/Unstructured: 72.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00078	RVT_1	4.51
PF02371	Transposase_20	3.01
PF08388	GIIM	2.26
PF07238	PilZ	1.50
PF01521	Fe-S_biosyn	1.50
PF13484	Fer4_16	1.50
PF00691	OmpA	1.50
PF04519	Bactofilin	1.50
PF04041	Glyco_hydro_130	0.75
PF00756	Esterase	0.75
PF00188	CAP	0.75
PF05016	ParE_toxin	0.75
PF13592	HTH_33	0.75
PF04879	Molybdop_Fe4S4	0.75
PF10101	DUF2339	0.75
PF00578	AhpC-TSA	0.75
PF00137	ATP-synt_C	0.75
PF00486	Trans_reg_C	0.75
PF13620	CarboxypepD_reg	0.75
PF07743	HSCB_C	0.75
PF01435	Peptidase_M48	0.75
PF04264	YceI	0.75
PF14821	Thr_synth_N	0.75
PF00005	ABC_tran	0.75
PF13517	FG-GAP_3	0.75
PF07969	Amidohydro_3	0.75
PF01497	Peripla_BP_2	0.75
PF07995	GSDH	0.75
PF13668	Ferritin_2	0.75
PF06751	EutB	0.75
PF13633	Obsolete Pfam Family	0.75
PF01238	PMI_typeI_C	0.75
PF01171	ATP_bind_3	0.75
PF00990	GGDEF	0.75
PF01610	DDE_Tnp_ISL3	0.75
PF00069	Pkinase	0.75
PF00753	Lactamase_B	0.75
PF08241	Methyltransf_11	0.75
PF02738	MoCoBD_1	0.75
PF07690	MFS_1	0.75
PF00361	Proton_antipo_M	0.75
PF04545	Sigma70_r4	0.75
PF00312	Ribosomal_S15	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.01
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.01
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	1.50
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	1.50
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	1.50
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.75
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	0.75
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.75
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.75
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.75
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.75
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.75
COG0636	FoF1-type ATP synthase, membrane subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K	Energy production and conversion [C]	0.75
COG1076	DnaJ domain-containing protein	Posttranslational modification, protein turnover, chaperones [O]	0.75
COG1482	Mannose-6-phosphate isomerase, class I	Carbohydrate transport and metabolism [G]	0.75
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.75
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.75
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.75
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.75
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.75
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.75
COG4303	Ethanolamine ammonia-lyase, large subunit	Amino acid transport and metabolism [E]	0.75
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.75
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.75
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.75
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.44 %
Unclassified	root	N/A	25.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.44 %
Unclassified	root	N/A	25.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.44 %
Unclassified	root	N/A	25.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.60 %
Unclassified	root	N/A	25.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.05 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.51 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.01 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.02 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.76 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3.01 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	6.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.76 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	3.01 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.75 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.75 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	6.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.76 %
Nitrosococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	3.01 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.75 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.75 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.75 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Nitrosococcus halophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus	3.01 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.75 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.75 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.75 %
unclassified Paraburkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia	0.75 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.75 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Nitrosococcus halophilus Nc 4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	3.01 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	0.75 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.75 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.75 %
Cystobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter	0.75 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.75 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.05 %
Nitrosococcus halophilus Nc 4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	3.01 %
Cystobacter fuscus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter → Cystobacter fuscus	0.75 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	0.75 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.75 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.75 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.75 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459024\|GZTSFBX01DQIMN	Not Available	507	Open in IMG/M
3300000733\|JGI12408J11912_1011149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	685	Open in IMG/M
3300000955\|JGI1027J12803_105397734	Not Available	1062	Open in IMG/M
3300000955\|JGI1027J12803_106542664	Not Available	897	Open in IMG/M
3300001182\|JGI12668J13544_1007344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	596	Open in IMG/M
3300001565\|A35518A_1062449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	814	Open in IMG/M
3300002245\|JGIcombinedJ26739_101121257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300002245\|JGIcombinedJ26739_101246216	Not Available	634	Open in IMG/M
3300002245\|JGIcombinedJ26739_101650126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	539	Open in IMG/M
3300002562\|JGI25382J37095_10080832	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300002681\|Ga0005471J37259_106409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	545	Open in IMG/M
3300002907\|JGI25613J43889_10057460	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300003368\|JGI26340J50214_10023763	All Organisms → cellular organisms → Bacteria → Acidobacteria	1871	Open in IMG/M
3300004104\|Ga0058891_1032216	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300005174\|Ga0066680_10146174	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300005177\|Ga0066690_10678514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300005332\|Ga0066388_104046833	Not Available	747	Open in IMG/M
3300005518\|Ga0070699_100186213	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300005542\|Ga0070732_10042575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2612	Open in IMG/M
3300005553\|Ga0066695_10569951	Not Available	685	Open in IMG/M
3300005557\|Ga0066704_10186406	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300005559\|Ga0066700_10088892	Not Available	2000	Open in IMG/M
3300005574\|Ga0066694_10609988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	509	Open in IMG/M
3300005575\|Ga0066702_10649531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	631	Open in IMG/M
3300005602\|Ga0070762_10798225	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300005610\|Ga0070763_10568421	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300005617\|Ga0068859_100351338	All Organisms → cellular organisms → Bacteria → Acidobacteria	1569	Open in IMG/M
3300005712\|Ga0070764_10104366	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300006052\|Ga0075029_100980582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	583	Open in IMG/M
3300006175\|Ga0070712_100089971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2247	Open in IMG/M
3300007255\|Ga0099791_10452321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300007258\|Ga0099793_10005587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4564	Open in IMG/M
3300007265\|Ga0099794_10031044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2498	Open in IMG/M
3300007265\|Ga0099794_10066279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1762	Open in IMG/M
3300007265\|Ga0099794_10802946	Not Available	503	Open in IMG/M
3300008785\|Ga0103638_1000614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300009038\|Ga0099829_10079667	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2504	Open in IMG/M
3300009038\|Ga0099829_10811203	Not Available	777	Open in IMG/M
3300009038\|Ga0099829_11053965	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300009089\|Ga0099828_10129857	Not Available	2211	Open in IMG/M
3300009624\|Ga0116105_1021090	All Organisms → cellular organisms → Bacteria → Acidobacteria	1370	Open in IMG/M
3300009635\|Ga0116117_1011775	All Organisms → cellular organisms → Bacteria → Acidobacteria	2253	Open in IMG/M
3300009638\|Ga0116113_1057957	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	900	Open in IMG/M
3300010339\|Ga0074046_10000781	All Organisms → cellular organisms → Bacteria	29258	Open in IMG/M
3300010366\|Ga0126379_10741965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1078	Open in IMG/M
3300010376\|Ga0126381_100223855	All Organisms → cellular organisms → Bacteria → Acidobacteria	2531	Open in IMG/M
3300010379\|Ga0136449_101980051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	861	Open in IMG/M
3300010379\|Ga0136449_103511876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	597	Open in IMG/M
3300010861\|Ga0126349_1068668	Not Available	671	Open in IMG/M
3300011082\|Ga0138526_1136930	Not Available	548	Open in IMG/M
3300011270\|Ga0137391_10139252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2111	Open in IMG/M
3300011270\|Ga0137391_10209093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1696	Open in IMG/M
3300012096\|Ga0137389_10124793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2079	Open in IMG/M
3300012189\|Ga0137388_10041385	All Organisms → cellular organisms → Bacteria → Acidobacteria	3674	Open in IMG/M
3300012199\|Ga0137383_10012738	All Organisms → cellular organisms → Bacteria → Acidobacteria	5678	Open in IMG/M
3300012205\|Ga0137362_10575371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300012210\|Ga0137378_10818087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300012359\|Ga0137385_10790455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300012582\|Ga0137358_10011852	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5448	Open in IMG/M
3300012582\|Ga0137358_10909530	Not Available	576	Open in IMG/M
3300012918\|Ga0137396_11090287	Not Available	572	Open in IMG/M
3300012924\|Ga0137413_10019109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	3564	Open in IMG/M
3300012925\|Ga0137419_11868965	Not Available	515	Open in IMG/M
3300012929\|Ga0137404_10581069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1006	Open in IMG/M
3300012929\|Ga0137404_12330871	Not Available	501	Open in IMG/M
3300012944\|Ga0137410_10270685	All Organisms → cellular organisms → Bacteria → Acidobacteria	1337	Open in IMG/M
3300012960\|Ga0164301_11775420	Not Available	518	Open in IMG/M
3300012975\|Ga0134110_10332508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	662	Open in IMG/M
3300014498\|Ga0182019_10565116	Not Available	795	Open in IMG/M
3300014501\|Ga0182024_10119834	All Organisms → cellular organisms → Bacteria	3768	Open in IMG/M
3300015053\|Ga0137405_1112200	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300015053\|Ga0137405_1314464	All Organisms → cellular organisms → Bacteria → Acidobacteria	1867	Open in IMG/M
3300015054\|Ga0137420_1110219	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1974	Open in IMG/M
3300015054\|Ga0137420_1120758	All Organisms → cellular organisms → Bacteria → Acidobacteria	926	Open in IMG/M
3300015054\|Ga0137420_1124635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300015054\|Ga0137420_1462524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	1716	Open in IMG/M
3300015193\|Ga0167668_1088514	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Cystobacter → Cystobacter fuscus	589	Open in IMG/M
3300017934\|Ga0187803_10109348	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300017970\|Ga0187783_10021374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4780	Open in IMG/M
3300018034\|Ga0187863_10788502	Not Available	538	Open in IMG/M
3300018088\|Ga0187771_11614098	Not Available	550	Open in IMG/M
3300019887\|Ga0193729_1013324	All Organisms → cellular organisms → Bacteria	3671	Open in IMG/M
3300019890\|Ga0193728_1097364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300020170\|Ga0179594_10015049	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300020581\|Ga0210399_10025362	All Organisms → cellular organisms → Bacteria → Acidobacteria	4710	Open in IMG/M
3300021307\|Ga0179585_1073147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	599	Open in IMG/M
3300021432\|Ga0210384_10000418	All Organisms → cellular organisms → Bacteria	65230	Open in IMG/M
3300021860\|Ga0213851_1217454	Not Available	517	Open in IMG/M
3300022531\|Ga0242660_1137327	Not Available	630	Open in IMG/M
3300022557\|Ga0212123_10226111	Not Available	1363	Open in IMG/M
3300022557\|Ga0212123_10850648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300022724\|Ga0242665_10214123	Not Available	641	Open in IMG/M
3300024182\|Ga0247669_1000890	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10292	Open in IMG/M
3300024330\|Ga0137417_1274572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	659	Open in IMG/M
3300024347\|Ga0179591_1016438	All Organisms → cellular organisms → Bacteria	6580	Open in IMG/M
3300025406\|Ga0208035_1039971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300025527\|Ga0208714_1006316	All Organisms → cellular organisms → Bacteria → Acidobacteria	3186	Open in IMG/M
3300026305\|Ga0209688_1107699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300026356\|Ga0257150_1016087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	1036	Open in IMG/M
3300026551\|Ga0209648_10031028	All Organisms → cellular organisms → Bacteria	4663	Open in IMG/M
3300026551\|Ga0209648_10038544	All Organisms → cellular organisms → Bacteria	4140	Open in IMG/M
3300026551\|Ga0209648_10576644	Not Available	623	Open in IMG/M
3300026555\|Ga0179593_1098612	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300026555\|Ga0179593_1135441	All Organisms → cellular organisms → Bacteria → Acidobacteria	2048	Open in IMG/M
3300026557\|Ga0179587_10007758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5488	Open in IMG/M
3300026880\|Ga0209623_1003870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	850	Open in IMG/M
3300027583\|Ga0209527_1089768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	690	Open in IMG/M
3300027591\|Ga0209733_1040749	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300027667\|Ga0209009_1005032	Not Available	3169	Open in IMG/M
3300027674\|Ga0209118_1055245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300027703\|Ga0207862_1032543	Not Available	1568	Open in IMG/M
3300027727\|Ga0209328_10036053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1522	Open in IMG/M
3300027812\|Ga0209656_10000423	All Organisms → cellular organisms → Bacteria → Acidobacteria	27960	Open in IMG/M
3300027846\|Ga0209180_10000241	All Organisms → cellular organisms → Bacteria	24358	Open in IMG/M
3300027894\|Ga0209068_10624722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300028577\|Ga0265318_10226944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	682	Open in IMG/M
3300030854\|Ga0075385_11828268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	965	Open in IMG/M
3300030923\|Ga0138296_1166729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	539	Open in IMG/M
3300031057\|Ga0170834_111006389	Not Available	506	Open in IMG/M
3300031249\|Ga0265339_10118949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1360	Open in IMG/M
3300031670\|Ga0307374_10000058	All Organisms → cellular organisms → Bacteria	173222	Open in IMG/M
3300031792\|Ga0318529_10177143	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300031823\|Ga0307478_10371405	Not Available	1181	Open in IMG/M
3300031890\|Ga0306925_10115940	All Organisms → cellular organisms → Bacteria	2862	Open in IMG/M
3300031893\|Ga0318536_10397903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300031910\|Ga0306923_11528275	Not Available	697	Open in IMG/M
3300031962\|Ga0307479_11021910	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300031962\|Ga0307479_11318780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300032070\|Ga0315279_10616959	Not Available	678	Open in IMG/M
3300032089\|Ga0318525_10460253	Not Available	651	Open in IMG/M
3300032205\|Ga0307472_101264680	Not Available	708	Open in IMG/M
3300033405\|Ga0326727_11286718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.74%
Host-Associated	Host-Associated	2.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.22%
Aquatic	Environmental → Aquatic	10.53%
Plants	Host-Associated → Plants	2.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.47%
Freshwater	Environmental → Aquatic → Freshwater	7.52%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.50%
Sediment	Environmental → Aquatic → Sediment	1.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.50%
Peat	Environmental → Terrestrial → Peat	0.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.17%
Loam	Environmental → Terrestrial → Soil → Loam	15.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.02%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.51%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Lake	Environmental → Aquatic → Freshwater → Lake	0.75%
Clay	Environmental → Terrestrial → Soil → Clay	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.28%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.01%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.01%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.26%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.75%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.52%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.76%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.01%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.26%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.50%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.50%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.75%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.75%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.75%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.75%
Wetland Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Wetland Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001182	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2	Environmental	Open in IMG/M
3300001565	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina new	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300008785	Microbial communities from wetland soil in Czech Republic - R1_cDNA	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026880	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060228

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD1_07946300	2170459024	Grass Soil	RTSEQVTAKSVSIKDAGGKSGGRVSKAVELIAGDLWHVSDS
JGI12408J11912_10111492	3300000733	Tropical Forest Soil	MIAKPISIKDAKRKFGGCVQKAVELISGDLLHVSDS*
JGI1027J12803_1053977342	3300000955	Soil	MIAKPISIKDAERKFGGCAWKAIELISGDLLQVTDS*
JGI1027J12803_1065426642	3300000955	Soil	IKDAGGKSGGRVSKAVELIAGDLLHVSNSRLRVE*
JGI12668J13544_10073441	3300001182	Forest Soil	MIAKPISIKDAERKFGGCAWKAIELISGDLLHVSDSRLRVE*
A35518A_10624491	3300001565	Permafrost	MIAKPISIKDAKRKFGGCARKAIELISGDLLHVSDSRLRVE*
JGIcombinedJ26739_1011212571	3300002245	Forest Soil	RWASGQMVAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDS*
JGIcombinedJ26739_1012462162	3300002245	Forest Soil	MIAKPISIKDAKRKFGGCAQKAVELISGDLLHVSNSRLRVE*
JGIcombinedJ26739_1016501261	3300002245	Forest Soil	MIAKPISIKDAKRKFGGCAWKAIELISGELLHVTDS*
JGI25382J37095_100808322	3300002562	Grasslands Soil	MIAKPISITDARRKFGGCAQKAVELTSGDPMQVAETRLGME*
Ga0005471J37259_1064091	3300002681	Forest Soil	MVAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE*
JGI25613J43889_100574602	3300002907	Grasslands Soil	MVAKPISIKDAKRKFGGCAWKAIELISGDLLHVSDSGLSVE*
JGI26340J50214_100237633	3300003368	Bog Forest Soil	MIAKSVSIKDAGGKSGGPVSKAVVAGDLLHVSDSGLSVK*
Ga0058891_10322162	3300004104	Forest Soil	VIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSRLGVE*
Ga0066680_101461742	3300005174	Soil	MIAKPISIKDARRKFGGCAQKAVELTSGDPMQVAETRLGRE*
Ga0066690_106785142	3300005177	Soil	IAKPISIKDARRKFGGCAQKAVELTSGDPMQVAETRLGRE*
Ga0066388_1040468332	3300005332	Tropical Forest Soil	MIAKPISIKDAKRKFGGCAQKAVELISGDLLHVSESGLRVK*
Ga0070699_1001862131	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	RERRASGPMIAKPISIKDAKRKSGGCAQKAVELISGDLLQVTDS*
Ga0070732_100425754	3300005542	Surface Soil	MIAKPISIKDAERKFGGCAQKAVELTSGDPLQVTET*
Ga0066695_105699512	3300005553	Soil	VIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS*
Ga0066704_101864062	3300005557	Soil	MIAKPISITDARRKFGGCAQKAVELTSGDPMQVAETRLGRE*
Ga0066700_100888922	3300005559	Soil	MIAKPISIKDAKRKFGGCAWKAIELISGDLMQVTDS*
Ga0066694_106099882	3300005574	Soil	MIAKSASIKDAGGKSGGRVSKAVELIAGDLLHVTDS*
Ga0066702_106495311	3300005575	Soil	IAKPISIKGTERKFGGCAWKAVELTSGDLLLVTES*
Ga0070762_107982251	3300005602	Soil	GQLIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS*
Ga0070763_105684211	3300005610	Soil	RTSEQVIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS*
Ga0068859_1003513382	3300005617	Switchgrass Rhizosphere	RTSWQLTTKSVSIKDAGGKSGGRVSKAVELIVGDLLHVSDS*
Ga0070764_101043663	3300005712	Soil	MVAKPISIKDAKRKFGGCAWKAVELIAGDLRHVTDA*
Ga0075029_1009805822	3300006052	Watersheds	MVAKPISIKDAKRKFGGCAWKAVELIAGGLLHVTDS*
Ga0070712_1000899711	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKPISIKDAKRKSGGCAQKAVELISGDLLHVSDS*
Ga0099791_104523211	3300007255	Vadose Zone Soil	MIAKPISINDAKRKFGGCALKAVELISGDLLHVSDS
Ga0099793_100055871	3300007258	Vadose Zone Soil	VIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSD
Ga0099794_100310442	3300007265	Vadose Zone Soil	IAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSRLRVE*
Ga0099794_100662791	3300007265	Vadose Zone Soil	RERRASGPMIAKPISIKDAKRKFGGCAWKAIELISGELLQVTDS*
Ga0099794_108029461	3300007265	Vadose Zone Soil	MAAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDS*
Ga0103638_10006142	3300008785	Wetland Soil	MIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSGLRVE*
Ga0099829_100796673	3300009038	Vadose Zone Soil	MIAKSVSIKDAGGKSGGRVSKADELIAGDLLHVSDS*
Ga0099829_108112032	3300009038	Vadose Zone Soil	RRTSWQLTTKSVSIKDAGGKSGGRVSQAVELITGDLLHVSDS*
Ga0099829_110539651	3300009038	Vadose Zone Soil	GPMVAKPISIKDAKRKFGGCAWKAVELIAGDLLHVSDSGLRVE*
Ga0099828_101298571	3300009089	Vadose Zone Soil	MIAKPISIKDAGGKFGGRVSKAVELIAGDLLHVSDSGLRVE*
Ga0116105_10210902	3300009624	Peatland	MIAKSVAIKDAGGKSSGRVSKAVELIAGDLLHVSDSGLRVK*
Ga0116117_10117751	3300009635	Peatland	MTAKSVAIKDAGGKSGGRVSKAAELIAGDVLHVSDSGLRVK*
Ga0116113_10579572	3300009638	Peatland	MIAKSVAIKDAGGKSGGRVSKAAELIAGDLLHVSDSGLRVK*
Ga0074046_1000078113	3300010339	Bog Forest Soil	MIAKSVSIKDAGGKSGGRVSKAVVAGDLLHVSDSGLSVK*
Ga0126379_107419651	3300010366	Tropical Forest Soil	VIAKPISIKDAKRKFGGGAQKAVELISGDLLHVSDS
Ga0126381_1002238552	3300010376	Tropical Forest Soil	MTTKSVSLKDAAGKSGGRVSKAAELIAGDLGTLSDSWLRAE*
Ga0136449_1019800511	3300010379	Peatlands Soil	MVAKPISIKDAKRKFGGCAWNAVELIAGDLLHVSDSGLRVE*
Ga0136449_1035118762	3300010379	Peatlands Soil	MAKPISIKDAKRRFGGVARTAVEVTSGGLLAVTDW*
Ga0126349_10686681	3300010861	Boreal Forest Soil	MIAKPISIKDAKRKFGGCARKAIELISGDLLHVSDSGLRVE*
Ga0138526_11369301	3300011082	Peatlands Soil	MVAKPISIKDAKRKSGGCAWKAIELIAGDLLHVSDSGLRVE*
Ga0137391_101392521	3300011270	Vadose Zone Soil	QLTTKSVSIKDAGGKSGGRVSKAVELIAGDLLHVTDS*
Ga0137391_102090932	3300011270	Vadose Zone Soil	MVAKPISIKDAKRKFGGGAWKAIELISGELLHVSDSGLRVE*
Ga0137389_101247932	3300012096	Vadose Zone Soil	IAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS*
Ga0137388_100413851	3300012189	Vadose Zone Soil	MIAKSVSIKDAGGKSGGRVSKADELISGDLLHVSDS*
Ga0137383_100127381	3300012199	Vadose Zone Soil	MVAKPISIKDAKRKSGGCAWKAVELIAGDLLYVSDSGLRVE*
Ga0137362_105753711	3300012205	Vadose Zone Soil	MVAMPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE*
Ga0137378_108180872	3300012210	Vadose Zone Soil	MAAKLLASKDAKRKFGGCAWKAVELIAGDLLQVTDSGLRVE*
Ga0137366_111374431	3300012354	Vadose Zone Soil	GLRCRASKQLIAKPISIKDTGGKSGGGAWKAIELIAGDLLCGTDS*
Ga0137385_107904552	3300012359	Vadose Zone Soil	MAAKPLAASKDAKRKFGGCAWKAVELIAGDLLQVTDSGLRVE*
Ga0137358_100118526	3300012582	Vadose Zone Soil	MVAKPISIKDAKRKFGGCAWKAVELIAGDLLHIMDSGLRVE*
Ga0137358_109095302	3300012582	Vadose Zone Soil	SGQVIAKSVSIKDAGGKSGGRVSKATELIAGDLLHVSNSGLRVE*
Ga0137396_110902871	3300012918	Vadose Zone Soil	IAKSVSIKDAGGKSGGCVSKAVELIAGDLLHVSDS*
Ga0137413_100191093	3300012924	Vadose Zone Soil	MIAKPISIKDAKRKFGGCAWKAIELISGDLLHVSDSGLSVE*
Ga0137419_118689651	3300012925	Vadose Zone Soil	ERRASGPMVAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSLGLRVE*
Ga0137404_105810691	3300012929	Vadose Zone Soil	MIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSGLRVE
Ga0137404_123308711	3300012929	Vadose Zone Soil	AKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSGLRVE*
Ga0137410_102706851	3300012944	Vadose Zone Soil	LATDNASVSIKDAGAKSGGRVSKVGELIAGDLLHVSDS
Ga0164301_117754201	3300012960	Soil	IAKPISIKGAGSKFGGRAWKTVELIAGDLLCVTES*
Ga0134110_103325081	3300012975	Grasslands Soil	MIAEPISIKGAKRKFGCCARKAVELISGDLLHVSDSRLRAKQ
Ga0182019_105651161	3300014498	Fen	KSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDSGLRVE*
Ga0182024_101198342	3300014501	Permafrost	MIAKSISIKDAGGKSGGRVSKAVELIAGDLLHVSES*
Ga0137405_11122002	3300015053	Vadose Zone Soil	MVAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDT
Ga0137405_13144642	3300015053	Vadose Zone Soil	VSIKDAGGKSGGRVSKAVELIAGDLLHVSDSGLSVE*
Ga0137420_11102192	3300015054	Vadose Zone Soil	MAAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE*
Ga0137420_11207581	3300015054	Vadose Zone Soil	RTSGQWTAKSVSIKDAGGKSGGRASKAVELIAGDLLHVSDSGLSVE*
Ga0137420_11246352	3300015054	Vadose Zone Soil	MVAKPISIKDAKRKSGGCAWKAVELIAGDLLHVTDS*
Ga0137420_14625243	3300015054	Vadose Zone Soil	MVAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDSGLRVE*
Ga0167668_10885141	3300015193	Glacier Forefield Soil	MIAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDS*
Ga0187803_101093481	3300017934	Freshwater Sediment	RASGPMIAKPIFIKDTGGKSDGCAWKAIELISGELLHVAASRLRVE
Ga0187783_100213744	3300017970	Tropical Peatland	MIAKPISIKDAKRKFGGCAQKAVELISGDLLHVSHS
Ga0187863_107885021	3300018034	Peatland	QVTTKSVSIKDAGRESGGRVSKAVEVIAGDRLRVTDSRQRAGRFTMTVQ
Ga0187771_116140981	3300018088	Tropical Peatland	RRASGQVIAKPISIKDAKRKFGGGARKAVGLTSGDLLPVTET
Ga0193729_10133242	3300019887	Soil	MIAKPISIKDAKRKFGGCAWKAIELISGDLLHVSDSGLRVE
Ga0193728_10973642	3300019890	Soil	RRTSWQRAGEVRTGGKSGGRVSKAVELITGDLLHVSDS
Ga0179594_100150491	3300020170	Vadose Zone Soil	MAAKPISIKDAKRKFGGCGWKAVELIAGDLLHVTDS
Ga0210399_100253625	3300020581	Soil	MVAKPISIKDAKRKFGGCAWKAIELIAGELLHVTDS
Ga0179585_10731471	3300021307	Vadose Zone Soil	MAAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE
Ga0210384_1000041810	3300021432	Soil	MSEQLTAKSVSIKDAGGKSGGRVSRVVELIAGDLLHVSDL
Ga0213851_12174541	3300021860	Watersheds	MIAKPISIKDAKRKFGGCAWNAVELIAGDLLHVSDSGLRVE
Ga0242660_11373271	3300022531	Soil	MIAKSVSIKDARGKSGGRVSTADELIAGDLRHVADS
Ga0212123_102261112	3300022557	Iron-Sulfur Acid Spring	RERWASGQMIAKPISIKDAKRKSGGGAWKAVELTSGDLLGVTES
Ga0212123_108506481	3300022557	Iron-Sulfur Acid Spring	QLITKSVSIKDAGGKSGGRVLKAVELIAGDLLHVSDSRLRVE
Ga0242665_102141231	3300022724	Soil	MVAKPISIKDAKGKFGGCAWKAVELIAGDLLHVSDSGLRVE
Ga0247669_10008902	3300024182	Soil	MIAKPISIKDAKRKFGGCAQKAIELISGGLLHVSDS
Ga0137417_12745721	3300024330	Vadose Zone Soil	MVAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSLGLRVE
Ga0179591_101643813	3300024347	Vadose Zone Soil	MAAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDS
Ga0208035_10399712	3300025406	Peatland	MTAKSVAIKDAGGKSSGRVSKAAELIAGDLLHVSDSGLRVK
Ga0208714_10063162	3300025527	Arctic Peat Soil	MIAKPIFIKDTGGKSDGCAWKAIELISGDLLHVSDS
Ga0209688_11076991	3300026305	Soil	GLRRRTSGPMIAKSASIKDAGGKSGGRVSKAVELIAGDLLHVTDS
Ga0257150_10160872	3300026356	Soil	RWASGPMAAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDS
Ga0209648_100310285	3300026551	Grasslands Soil	MVAKPISIKDAKRKFGGCAWKAIELISGELLQVTDS
Ga0209648_100385442	3300026551	Grasslands Soil	MIAKPISIKDAKRKSGGCAWKAVELIAGDLLHVSDSGLRVE
Ga0209648_105766441	3300026551	Grasslands Soil	MVAKPISIKDAKRKFGGCAWKAIELISGDLLHVSDSGLSVE
Ga0179593_10986123	3300026555	Vadose Zone Soil	MAAKPISIKDAKRKSGGCAWKAVELIAGDLLHVTDSGLRVE
Ga0179593_11354412	3300026555	Vadose Zone Soil	MVAKPISIKDAKRKFGGCAWKAVELIAGDLLHVTDSGLRVE
Ga0179587_100077581	3300026557	Vadose Zone Soil	VSIKDAGGKSGGRVSKAVELITGDLLHVSDSGLSVE
Ga0209623_10038701	3300026880	Forest Soil	MIAKPISIKDAERKFGGCAWKAIELISGDLLHVSDSRLRVE
Ga0209527_10897681	3300027583	Forest Soil	MIAKPISIKDAKRKFGGCARKAIELISGDLLHVSDSR
Ga0209733_10407491	3300027591	Forest Soil	MIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS
Ga0209009_10050321	3300027667	Forest Soil	SEQLIAKSVSIKGAGGKSGGRVSKAVELIAGDLLHVSDSRLRVK
Ga0209118_10552451	3300027674	Forest Soil	RTSWQLTTKSVSIKDAGGKSGGRVSKAVELISGDLLHVSEM
Ga0207862_10325432	3300027703	Tropical Forest Soil	TTKSVSIKDAGGKSGGRVSKAVELIAGDLLRVTES
Ga0209328_100360532	3300027727	Forest Soil	MIAKSVSSKDAGGKSGGRVSKAVELIAGDLWHVSDLGMGG
Ga0209656_1000042311	3300027812	Bog Forest Soil	MIAKSVSIKDAGGKSGGPVSKAVVAGDLLHVSDSGLSVK
Ga0209180_100002416	3300027846	Vadose Zone Soil	MIAKSVSIKDAGGKSGGRVSKADELIAGDLLHVSDS
Ga0209068_106247221	3300027894	Watersheds	EQLIAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS
Ga0265318_102269442	3300028577	Rhizosphere	RTSEPVIAKSVSIKDASGKSGGRVSKAVELIVGDLLHVSDSGLRVE
Ga0075385_118282681	3300030854	Soil	PMIAKPISIKDAKRKFGGCAWKAVELIAGDLLHVSDSGLSVE
Ga0138296_11667291	3300030923	Soil	MIAKPISIKDAKRKFGGCAWKAIELISGELLHVADSRLRVE
Ga0170834_1110063891	3300031057	Forest Soil	IAKSVSIKDAGGKSGGRVSKAVELIAGDLLHVSDS
Ga0265339_101189491	3300031249	Rhizosphere	SVSIKDAGGKSGGRVSKAVELIVGDLLHVSDSGLRVE
Ga0307374_1000005870	3300031670	Soil	MIAKSVSIKDAGGKCGGRVSKGVELVAGDLLHVSDSGLRVE
Ga0318529_101771432	3300031792	Soil	SVSIKDVGGKSGGRASKAAELIAGDLRHVADSRLRVK
Ga0307478_103714051	3300031823	Hardwood Forest Soil	LSEQLTAKAVSIKDAGGKSGGRVSKMVELSEGDLLHVSDS
Ga0306925_101159406	3300031890	Soil	MTTKSVSIKDAGSKSGGRVLKAAELITGDLRHVSDS
Ga0318536_103979031	3300031893	Soil	SWQLTTKSVSIKDVGGKSGGRASKAAELIAGDLRHVADSRLRVK
Ga0306923_115282751	3300031910	Soil	ASIKETGGKCGGRVSKAFELIAGDLRHVSDSRLGVK
Ga0307479_110219102	3300031962	Hardwood Forest Soil	RERGASGQMIAKPLSIKDAKRKFGGCAQKAVEPTWGDPL
Ga0307479_113187801	3300031962	Hardwood Forest Soil	MIAKPISIKDAKRKFGGCAQKAVELTSGDPLQVAETRLGVER
Ga0315279_106169591	3300032070	Sediment	TSGQATTKSISIKHRGCKSGGRASKAAKLTSGDLPHVTAS
Ga0318525_104602531	3300032089	Soil	TTKSVSIKDVGGKSGGRASKAAELIAGDLRHVADSRLRVK
Ga0307472_1012646801	3300032205	Hardwood Forest Soil	MVAKPISIKDAKRKFGGCAWKAIELISGDLLHVSDSGLRVE
Ga0326727_112867181	3300033405	Peat Soil	TSEQLIAKSVSIKDAGGKSGGRVSKAVELITGDLLHVSDS

Hidden Markov Model


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