Metagenome / Metatranscriptome Family F060277

Basic Information
Family ID	F060277
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	40 residues
Representative Sequence	MRRRIAHGLAIAFLIVGLGAAQGPNISEAKPAPVSSVQA
Number of Associated Samples	117
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.25 %
% of genes near scaffold ends (potentially truncated)	99.25 %
% of genes from short scaffolds (< 2000 bps)	93.98 %
Associated GOLD sequencing projects	111
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Bacteria (77.444 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.534 % of family members)
Environment Ontology (ENVO)	Unclassified (27.820 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.910 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 28.36% β-sheet: 0.00% Coil/Unstructured: 71.64%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF08543	Phos_pyr_kin	56.39
PF13248	zf-ribbon_3	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	56.39
COG0524	Sugar or nucleoside kinase, ribokinase family	Carbohydrate transport and metabolism [G]	56.39
COG2240	Pyridoxal/pyridoxine/pyridoxamine kinase	Coenzyme transport and metabolism [H]	56.39
COG2870	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase	Cell wall/membrane/envelope biogenesis [M]	56.39

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.44 %
Unclassified	root	N/A	22.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.44 %
Unclassified	root	N/A	22.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.44 %
Unclassified	root	N/A	22.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	75.94 %
Unclassified	root	N/A	22.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	6.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.77 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6.77 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.01 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000650\|AP72_2010_repI_A1DRAFT_1013411	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300001305\|C688J14111_10073812	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300001356\|JGI12269J14319_10163027	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300002568\|C688J35102_119468374	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300004080\|Ga0062385_11198708	Not Available	519	Open in IMG/M
3300004082\|Ga0062384_101223722	Not Available	547	Open in IMG/M
3300004091\|Ga0062387_101774001	Not Available	503	Open in IMG/M
3300004092\|Ga0062389_104516977	Not Available	524	Open in IMG/M
3300005167\|Ga0066672_11033705	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300005176\|Ga0066679_10266620	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300005560\|Ga0066670_10732927	Not Available	599	Open in IMG/M
3300005568\|Ga0066703_10868478	Not Available	515	Open in IMG/M
3300005591\|Ga0070761_10187213	All Organisms → cellular organisms → Bacteria → Acidobacteria	1223	Open in IMG/M
3300005764\|Ga0066903_106433528	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300005921\|Ga0070766_10081393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1885	Open in IMG/M
3300005994\|Ga0066789_10113151	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300006028\|Ga0070717_10156810	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300006086\|Ga0075019_10621241	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300006102\|Ga0075015_100810073	Not Available	563	Open in IMG/M
3300006173\|Ga0070716_100535320	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300006797\|Ga0066659_10147438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1669	Open in IMG/M
3300006804\|Ga0079221_11298696	Not Available	572	Open in IMG/M
3300009523\|Ga0116221_1292696	All Organisms → cellular organisms → Bacteria → Acidobacteria	704	Open in IMG/M
3300009525\|Ga0116220_10582699	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300009665\|Ga0116135_1224586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300010339\|Ga0074046_10752034	Not Available	571	Open in IMG/M
3300010343\|Ga0074044_10472984	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300010358\|Ga0126370_10369311	All Organisms → cellular organisms → Bacteria → Acidobacteria	1167	Open in IMG/M
3300010358\|Ga0126370_12049517	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300010360\|Ga0126372_12808204	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300010376\|Ga0126381_100553794	All Organisms → cellular organisms → Bacteria → Acidobacteria	1630	Open in IMG/M
3300010376\|Ga0126381_103089360	All Organisms → cellular organisms → Bacteria → Acidobacteria	660	Open in IMG/M
3300010379\|Ga0136449_100433341	All Organisms → cellular organisms → Bacteria → Acidobacteria	2315	Open in IMG/M
3300010398\|Ga0126383_10161500	All Organisms → cellular organisms → Bacteria → Acidobacteria	2104	Open in IMG/M
3300012363\|Ga0137390_11528660	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300012944\|Ga0137410_11939804	Not Available	522	Open in IMG/M
3300012958\|Ga0164299_11647352	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300012961\|Ga0164302_11679328	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300012971\|Ga0126369_10034419	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4199	Open in IMG/M
3300014165\|Ga0181523_10041300	All Organisms → cellular organisms → Bacteria → Acidobacteria	2908	Open in IMG/M
3300014489\|Ga0182018_10696787	Not Available	529	Open in IMG/M
3300014501\|Ga0182024_12949493	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300015374\|Ga0132255_100613015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1610	Open in IMG/M
3300016422\|Ga0182039_11276254	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300017928\|Ga0187806_1259481	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300017930\|Ga0187825_10409421	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300017934\|Ga0187803_10194368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300017938\|Ga0187854_10195537	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300017970\|Ga0187783_10895455	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300017973\|Ga0187780_10900812	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300017973\|Ga0187780_11048327	Not Available	595	Open in IMG/M
3300017975\|Ga0187782_10120927	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300017995\|Ga0187816_10097736	All Organisms → cellular organisms → Bacteria → Acidobacteria	1259	Open in IMG/M
3300018006\|Ga0187804_10059125	All Organisms → cellular organisms → Bacteria → Acidobacteria	1516	Open in IMG/M
3300018007\|Ga0187805_10067269	All Organisms → cellular organisms → Bacteria → Acidobacteria	1611	Open in IMG/M
3300018019\|Ga0187874_10303000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300018037\|Ga0187883_10599435	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300018047\|Ga0187859_10708165	Not Available	573	Open in IMG/M
3300018057\|Ga0187858_10961138	Not Available	501	Open in IMG/M
3300018062\|Ga0187784_11388943	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300018088\|Ga0187771_10566156	All Organisms → cellular organisms → Bacteria → Acidobacteria	963	Open in IMG/M
3300018088\|Ga0187771_11265351	Not Available	626	Open in IMG/M
3300019890\|Ga0193728_1330107	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300020021\|Ga0193726_1235633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300020579\|Ga0210407_11182142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300020581\|Ga0210399_10737362	All Organisms → cellular organisms → Bacteria → Acidobacteria	808	Open in IMG/M
3300020581\|Ga0210399_11005703	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300020581\|Ga0210399_11112491	Not Available	631	Open in IMG/M
3300020583\|Ga0210401_10356923	All Organisms → cellular organisms → Bacteria → Acidobacteria	1323	Open in IMG/M
3300021168\|Ga0210406_10658285	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300021170\|Ga0210400_11428364	Not Available	551	Open in IMG/M
3300021171\|Ga0210405_10422950	All Organisms → cellular organisms → Bacteria → Acidobacteria	1048	Open in IMG/M
3300021178\|Ga0210408_11369232	Not Available	534	Open in IMG/M
3300021181\|Ga0210388_11693525	Not Available	523	Open in IMG/M
3300021405\|Ga0210387_10831346	All Organisms → cellular organisms → Bacteria → Acidobacteria	815	Open in IMG/M
3300021407\|Ga0210383_10902477	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300021407\|Ga0210383_11547247	Not Available	547	Open in IMG/M
3300021420\|Ga0210394_10282841	All Organisms → cellular organisms → Bacteria → Acidobacteria	1454	Open in IMG/M
3300021432\|Ga0210384_10496835	All Organisms → cellular organisms → Bacteria → Acidobacteria	1098	Open in IMG/M
3300021476\|Ga0187846_10099609	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300021479\|Ga0210410_10283698	All Organisms → cellular organisms → Bacteria → Acidobacteria	1486	Open in IMG/M
3300021560\|Ga0126371_11328794	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300021560\|Ga0126371_11609246	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M
3300021560\|Ga0126371_11749504	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300022521\|Ga0224541_1020674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300022557\|Ga0212123_10541776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300022730\|Ga0224570_109369	Not Available	611	Open in IMG/M
3300023056\|Ga0233357_1028794	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300023255\|Ga0224547_1031018	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300025134\|Ga0207416_1132939	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300025906\|Ga0207699_10221561	All Organisms → cellular organisms → Bacteria → Acidobacteria	1291	Open in IMG/M
3300025912\|Ga0207707_10254352	All Organisms → cellular organisms → Bacteria → Acidobacteria	1525	Open in IMG/M
3300025928\|Ga0207700_10045719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3233	Open in IMG/M
3300025939\|Ga0207665_10106231	All Organisms → cellular organisms → Bacteria → Acidobacteria	1967	Open in IMG/M
3300026551\|Ga0209648_10602131	Not Available	605	Open in IMG/M
3300026557\|Ga0179587_10360086	All Organisms → cellular organisms → Bacteria → Acidobacteria	944	Open in IMG/M
3300026833\|Ga0207728_112766	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300027011\|Ga0207740_1022793	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300027014\|Ga0207815_1036277	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300027039\|Ga0207855_1057921	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300027370\|Ga0209010_1039987	All Organisms → cellular organisms → Bacteria → Acidobacteria	800	Open in IMG/M
3300027514\|Ga0208338_1003248	All Organisms → cellular organisms → Bacteria → Acidobacteria	744	Open in IMG/M
3300027729\|Ga0209248_10159879	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300027737\|Ga0209038_10101681	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300027737\|Ga0209038_10227206	Not Available	562	Open in IMG/M
3300027787\|Ga0209074_10385341	Not Available	583	Open in IMG/M
3300027825\|Ga0209039_10325643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300027867\|Ga0209167_10178079	All Organisms → cellular organisms → Bacteria → Acidobacteria	1126	Open in IMG/M
3300027867\|Ga0209167_10313368	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300027895\|Ga0209624_11128038	Not Available	504	Open in IMG/M
3300027898\|Ga0209067_10515227	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300027911\|Ga0209698_10030733	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4917	Open in IMG/M
3300027911\|Ga0209698_10226711	All Organisms → cellular organisms → Bacteria → Acidobacteria	1501	Open in IMG/M
3300027911\|Ga0209698_10465557	All Organisms → cellular organisms → Bacteria → Acidobacteria	982	Open in IMG/M
3300027911\|Ga0209698_10758608	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300027911\|Ga0209698_10886595	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300028572\|Ga0302152_10312175	Not Available	518	Open in IMG/M
3300028748\|Ga0302156_10454908	Not Available	551	Open in IMG/M
3300029944\|Ga0311352_10308302	All Organisms → cellular organisms → Bacteria → Acidobacteria	1317	Open in IMG/M
3300029944\|Ga0311352_10608560	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300030007\|Ga0311338_11482051	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300030043\|Ga0302306_10136599	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300030058\|Ga0302179_10031915	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2452	Open in IMG/M
3300030503\|Ga0311370_11365802	All Organisms → cellular organisms → Bacteria → Acidobacteria	752	Open in IMG/M
3300030520\|Ga0311372_13045173	Not Available	505	Open in IMG/M
3300031051\|Ga0074029_1661993	Not Available	704	Open in IMG/M
3300031128\|Ga0170823_15168135	All Organisms → cellular organisms → Bacteria → Acidobacteria	1063	Open in IMG/M
3300031708\|Ga0310686_112672976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1721	Open in IMG/M
3300032828\|Ga0335080_11713436	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300032892\|Ga0335081_10206758	All Organisms → cellular organisms → Bacteria → Acidobacteria	2709	Open in IMG/M
3300032898\|Ga0335072_10760159	All Organisms → cellular organisms → Bacteria → Acidobacteria	935	Open in IMG/M
3300032954\|Ga0335083_11009503	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300033545\|Ga0316214_1072794	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.74%
Host-Associated	Host-Associated	2.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.44%
Aquatic	Environmental → Aquatic	23.31%
Plants	Host-Associated → Plants	2.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.41%
Freshwater	Environmental → Aquatic → Freshwater	15.79%
Peat	Environmental → Terrestrial → Peat	8.27%
Sediment	Environmental → Aquatic → Sediment	6.02%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.50%
Cave	Environmental → Terrestrial → Cave	0.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.75%
Roots	Host-Associated → Plants → Roots	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.79%
Loam	Environmental → Terrestrial → Soil → Loam	13.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.02%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.50%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.53%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.02%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.51%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.26%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.02%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.02%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.26%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.26%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.51%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.26%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.50%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.50%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.75%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022730	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2	Host-Associated	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027014	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027514	Forest soil microbial communities from Browns Valley, California, USA, that are Nitrogen fertilized - NN91 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031051	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Humus C1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A1DRAFT_10134112	3300000650	Forest Soil	MRRRIAQGLAIGFLIVGLGAAQGPNISEAKPAPVSSVQQSAARKQ
C688J14111_100738121	3300001305	Soil	MQRRIAHGLATAFLIVGLGAAQGPNISEAKPAPGSSVQASPE
JGI12269J14319_101630271	3300001356	Peatlands Soil	MRRCIAHGLAIACVIVGLGAAQGPNISEATPAPVSSIQ
C688J35102_1194683742	3300002568	Soil	MRRRIAHGLAIGFMIVGLGAAQGPNISEAKPAPVRSVQSRLEVRKQV
Ga0062385_111987082	3300004080	Bog Forest Soil	MQRILAHGLTLALVVSLGAAQGPNNSGATPARNRSARTKPEVR
Ga0062384_1012237221	3300004082	Bog Forest Soil	MQRFLAHGLALALVVSLGAAQGPNNSGATPARSNTAQTKPEV
Ga0062387_1017740011	3300004091	Bog Forest Soil	MQRFLAHGLALALVVSLGAAQGPNNSGATPARCNTAQTKPEV
Ga0062389_1045169771	3300004092	Bog Forest Soil	MQRRIAHGLVIGLLVIGLRAAQGPNNSEASSAPTSPPQIKPQ
Ga0066672_110337051	3300005167	Soil	MRLRLAHGLALAFLIASLGAAQGPNNSEATPAPNRTAQSKP
Ga0066679_102666201	3300005176	Soil	MRRRLAHGLALALLVASLGAAQGPNNSEATPAPVSTAQTKPKVISNSVKPRA
Ga0066670_107329272	3300005560	Soil	MRRFIAHGLAIAFLVVSLGAAQGPNISEAKAAPLSSSRMSPE
Ga0066703_108684782	3300005568	Soil	MRRFIAHGLAIAFLVVSLGAAQGPNISEAKAAPLSS
Ga0070761_101872134	3300005591	Soil	MRRTLAQVLAIAFLVAGTGAAQGPNNSEATPAPISS
Ga0066903_1064335282	3300005764	Tropical Forest Soil	MRSRLAQGLALFLCVASLGAAQGPNSSEAKPAPISSIQV
Ga0070766_100813931	3300005921	Soil	MRGRIAHGLMIAFLVVGLGAAQGPNNSEASSAQTRAV
Ga0066789_101131511	3300005994	Soil	MRRRIAHGLAIVCLIVGLGAAQGPNISEATAAPVSSVQKQPEVRQQVG
Ga0070717_101568101	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRIAHGLAIAFLIVGLGAAQGPNISEAKPAPVS
Ga0075019_106212412	3300006086	Watersheds	MRRRIAHGLAIAFLIVGLGAAQGPNISEAKPAPGS
Ga0075015_1008100732	3300006102	Watersheds	MQRRLAHGLALGVIVASLGAAQGPNNSEATPAPNSSSQK
Ga0070716_1005353201	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQRRIARGLAIAGLIVGLGAAQGPNISEAKPAPVS
Ga0066659_101474381	3300006797	Soil	MRRRLAQGMAIAFLVASLGAAQAPNNSEATPAPSKSAKNKPKAQKP
Ga0079221_112986961	3300006804	Agricultural Soil	MQRRIAHGLAIALATACLGAAQGPNISEAKSAPSSS
Ga0116221_12926962	3300009523	Peatlands Soil	MQRCIAHGLAILCLIVGLGAAQGPNISEATAAPVS
Ga0116220_105826991	3300009525	Peatlands Soil	MRRRLAQGLALSFLIASLGAAQGPNNSEATPKPLS
Ga0116135_12245862	3300009665	Peatland	MRRTLAQVLAIAFLVAGTGAAQGPNNSEATPAPIS
Ga0074046_107520341	3300010339	Bog Forest Soil	MRRRLAHGLAFLIASLGATQGPNISEATPAPSSSVQTKSEVR
Ga0074044_104729842	3300010343	Bog Forest Soil	MRHFIAQGLMIASMIVCLGAAQGPNNSEASSAPIRAVQAKP
Ga0126370_103693112	3300010358	Tropical Forest Soil	MRRRIAHGLAIAFLIVGLGAAQGPNSSEAKPAPISSIQV
Ga0126370_120495171	3300010358	Tropical Forest Soil	MQRRIAHGLAIGFLIVGLGAAQGPNISEAKPAPVSSV
Ga0126372_128082042	3300010360	Tropical Forest Soil	MQRRLAHGLAIAFLIVGLGAAQGPNNSEAKPAPTSSIQAKSAVRK
Ga0126381_1005537941	3300010376	Tropical Forest Soil	MQRRIAHGLAIGFLIVGLGAAQGPNISEAKPAPVS
Ga0126381_1030893602	3300010376	Tropical Forest Soil	MHRRLAHGLAIAFLIVGLGAAQGPNNSEAKPAPTSSIQAKSA
Ga0136449_1004333413	3300010379	Peatlands Soil	MRRRIAHGLAIACMIVGLGAAQGPNISEATAAPVSSVQKQPEVRQQVG
Ga0126383_101615003	3300010398	Tropical Forest Soil	MQRRLAHGLAIAFLIVDLGAAQGPNNSEAKPAPTSSI
Ga0137390_115286601	3300012363	Vadose Zone Soil	MRRRLAHGLAMAFLVASLGAAQGPNNSEATPARARSVES
Ga0137410_119398041	3300012944	Vadose Zone Soil	MQRRIAHGLALALLFASLGAAQGPNISEAKPAPGSSTQTKSEVRKQ
Ga0164299_116473521	3300012958	Soil	MRRRIAHGLAIAFLIVGLGAAQGPNNSEAKPAPISSIQAQPEV
Ga0164302_116793281	3300012961	Soil	MRRRIAHGLAIAFLIVGLGAAQGPNNSEAKPAPISSIQAQPEVRK
Ga0126369_100344191	3300012971	Tropical Forest Soil	MHRRLAHGLAIAFLIVGLGAAQGPNNSEAKPAPTSSIQAKSAVRKQV
Ga0181523_100413005	3300014165	Bog	MRRCIAHGLAIACLIVGLGAAQGPNISEATAAPVSSV
Ga0182018_106967871	3300014489	Palsa	MRRRIAHGLMIGLLIVGLRAAQGPNSSEASSAPTR
Ga0182024_129494931	3300014501	Permafrost	MRRFLAHGLAIAFWIVGLGAAQGPNISEATAAPVSSAQTKLQSRKQ
Ga0132255_1006130153	3300015374	Arabidopsis Rhizosphere	MRRRIAQGLAIGFMIVGLGAAQGPNISEAKPAPVSSVQ
Ga0182039_112762541	3300016422	Soil	MRRCVAHGLAIGGLIVGLGAAQGPNISEAKPAPVSSV
Ga0187806_12594811	3300017928	Freshwater Sediment	MRRRIAHGLAIAFLIVGLGAAQGPNISEAIAAPVSSVQKQP
Ga0187825_104094211	3300017930	Freshwater Sediment	MRRRIAHGLAIAFLIVGLGAAQGPNSSEAKPAPISSIQVQPEVRTQV
Ga0187803_101943682	3300017934	Freshwater Sediment	MRRRIAHGLAIACLIVGLGAAQGPNISEAIAAPVSSVHKQPEVR
Ga0187854_101955372	3300017938	Peatland	MRRRIAHGLMIGLMIVGLRAAQGPNNSEASSAPTS
Ga0187783_108954551	3300017970	Tropical Peatland	MQRRTAHGLAIAFVIAGLGAAQGPNISEAKPAPVSSVQTRPV
Ga0187780_109008122	3300017973	Tropical Peatland	MRRRIAHGLAIVCMIVGLGAAQGPNISEATPAPVSSV
Ga0187780_110483271	3300017973	Tropical Peatland	MRRRIAHGLAIVCMVAGLGAAQGPNISEAKPAPVSSVATPE
Ga0187782_101209274	3300017975	Tropical Peatland	MRRRLAQGLALAFMIASLGAAQGPNISEATPAPNSSVQTK
Ga0187816_100977362	3300017995	Freshwater Sediment	MRRRIAHGLAIAFLIVGLGAAQGPNISEAKPAPVSSVQA
Ga0187804_100591252	3300018006	Freshwater Sediment	MQRRLAHGLAIASLIVGLGAAQGPNISEATQAPIS
Ga0187805_100672692	3300018007	Freshwater Sediment	MRRRTAHGLAIACLIVGLGAAQGPNISEAKPAPVSSVQVQPV
Ga0187874_103030001	3300018019	Peatland	MRRCIARGLAIACLIVGLGAAQGPNISEATAAPVSSVQ
Ga0187883_105994351	3300018037	Peatland	MRRRIAHGLAIAFLIVGLGAAQGPNISEATAAPVSSVQAQ
Ga0187859_107081652	3300018047	Peatland	MRGRIAHGLMIGLLVVGLGAAQGPNNSEASSAPSRSAQIK
Ga0187858_109611381	3300018057	Peatland	MRRCIARGWTIACLVVGLGAAQGPNISEATAAPVSSVHKQPEVR
Ga0187784_113889431	3300018062	Tropical Peatland	MRRRMAQGLALAFMIASLGAAQGPNISEATPAPSSSVQTK
Ga0187771_105661561	3300018088	Tropical Peatland	MQRRLAQGLALAFMIASLGAAQGPNISEATPAPNSSVQRKSEVRNQ
Ga0187771_112653511	3300018088	Tropical Peatland	MRRRLAQGLALACMVASLGAAQGPNISEATPAPSSSVQTKSGV
Ga0193728_13301071	3300019890	Soil	MRRRLAHGLAMAFLVASLGAAQGPNNSEATPARARS
Ga0193726_12356332	3300020021	Soil	MRRCIAHGLAIAFLIVGLGAAQGPNISEATAAPLSSVQSRPEV
Ga0210407_111821422	3300020579	Soil	MRGRIAHGLMIALLVVGLGAAQGPNNSEASSAPTRAVP
Ga0210399_107373622	3300020581	Soil	MRRRIAHVLMIGLLIVGLGAAQGPNNSEASSAQTS
Ga0210399_110057031	3300020581	Soil	MRGLIARGLTIGLLIVGLGAAQGPNNSEASSAQIRAVRAKP
Ga0210399_111124912	3300020581	Soil	MRRFIARGLAIASMIVGLGAAQGPNISEATAAPVSSVQARPEVRQQVD
Ga0210401_103569232	3300020583	Soil	MRGRIAHGLMIGVLVVGLGAAQSSKHSEASSAQTS
Ga0210406_106582851	3300021168	Soil	MRRRIAHGLAIAFLIVGLGAAQGPNISEAKPAPVSSVQAKSEVR
Ga0210400_114283641	3300021170	Soil	MRRYIAHGLAIAFLIVGLGAAQGPNISEATAAPGS
Ga0210405_104229501	3300021171	Soil	MRRRIAHGLAIAFLIVGLGAAQGPNISEATPAPVSS
Ga0210408_113692321	3300021178	Soil	MQRRIAHGLALAFLYASLGAAQGPNISEAKPAPGSSTK
Ga0210388_116935252	3300021181	Soil	MRRYLAHGVAIILLIVCLGAAQGPNISEATAAPVSPKQANP
Ga0210387_108313462	3300021405	Soil	MRRYLAHGVAIILLIVCLGAAQGPNISEATAAPVSPKQANPEVGKQA
Ga0210383_109024771	3300021407	Soil	MRRRIAHGLMIGLLIVGLGAAQGPNSSEASSVPSSSAQTKPEIHK
Ga0210383_115472471	3300021407	Soil	MRGCIARGLMIAVMVVGLGAAQGPNNSEASSAPISTVRSKP
Ga0210394_102828413	3300021420	Soil	MRRRLAHGLAIAFLIVGLGAAQGPNISEAKPAPVSSVQAKSEV
Ga0210384_104968352	3300021432	Soil	MQLRLAHGLALAFLIASLGAAQGPNNSEATPAPNKSTLSRVQ
Ga0187846_100996091	3300021476	Biofilm	MRRRLAHGLAIAFLIAGLGAAQGPNSSEAKPAPNSSIQVKPGFRNQV
Ga0210410_102836982	3300021479	Soil	MRRRIAHGLALACLFASLGAAQGPNISEATPAPVSS
Ga0126371_113287941	3300021560	Tropical Forest Soil	MHRRLAHGLTIAFLIVGLGAAQGPNNSEAKPAPTSSI
Ga0126371_116092462	3300021560	Tropical Forest Soil	MQRCIAHGLAIVCTVACLGAAQGPNISEAKSAPVSSVHAPPVRKQV
Ga0126371_117495041	3300021560	Tropical Forest Soil	MRRRLAHGLTIALLVVGLGAAQGPNISEAKPAPVSSVQIKPVA
Ga0224541_10206741	3300022521	Soil	MQGRIAHGLMIALLIVGLGAAQGPNSSEASSAPTSPVPSKPE
Ga0212123_105417761	3300022557	Iron-Sulfur Acid Spring	MRRFLAHGLAIAFLIVCLGAAQGPNISEAKAAPVSSITL
Ga0224570_1093691	3300022730	Rhizosphere	MRRTIAQGLAIAFLIAGTGAAQGPNNSEATPAPISS
Ga0233357_10287942	3300023056	Soil	MRRRIAHGLMIGLLIVGLGAAQGPNSSEASSAQNRSA
Ga0224547_10310181	3300023255	Soil	MRRRIAHGLAIVCLIVGLGAAQGPNISEATAAPVSSVQKQPEVRQ
Ga0207416_11329392	3300025134	Iron-Sulfur Acid Spring	MRRFLAHGLAIAFLIVCLGAAQGPNISEAKAASVSSIR
Ga0207699_102215611	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MQRRIARGLAIAGLIVGLGAAQGPNISEAKPAPVSSVQVRQVVKQV
Ga0207707_102543522	3300025912	Corn Rhizosphere	MQRRIARGLAIAGLIVGLGAAQGPNISEAKPAPVSSVQVRQVVKQVKT
Ga0207700_100457191	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRIAHGLAIAFLIVGLGAAQGPNSSEKPAPISSIQVQPEVRKQVS
Ga0207665_101062313	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRRFIAQGLAIAFLIVGLGAAQGPNISEAIAAPVSSVQVTPEVRP
Ga0209648_106021312	3300026551	Grasslands Soil	MRRFIARGLAIAFLIVGLGAAQGPNISEAIAAPVSSVQARPEVRQQ
Ga0179587_103600861	3300026557	Vadose Zone Soil	MRRRIAHGLMIGLLIVGLGAAQGPNNSEASSAQTSRIPKSEAP
Ga0207728_1127661	3300026833	Tropical Forest Soil	MRRCIAHGLAIACLIVGLGAAQGPNISEATAAPVSSVQLQP
Ga0207740_10227931	3300027011	Tropical Forest Soil	MRRCIAHGLAIACLIVGLGAAQGPNISEATAAPVSSVQLQPAVR
Ga0207815_10362771	3300027014	Tropical Forest Soil	MQRRIAHGLAIGFLIVGLGAAQGPNNSEAKPAPTSSTQGK
Ga0207855_10579211	3300027039	Tropical Forest Soil	MQRRIAHGLAIGFLIVGLGAAQGPNNSEAKPAPTSSTQGKPV
Ga0209010_10399872	3300027370	Forest Soil	MRRTLAQVLAIAFLVAGTGAAQGPNNSEATPAPISSGRIQH
Ga0208338_10032481	3300027514	Soil	MRRRIAHGLAIGFMIVGLGAAQGPNISEAKPAPVRS
Ga0209248_101598792	3300027729	Bog Forest Soil	MRRTIAQGLAIAFLIAGTGAAQGPNNSEATPAPISSTRIKPE
Ga0209038_101016811	3300027737	Bog Forest Soil	MRGRIAHGLMIAFLVVGLGAAQGPNNSEASSAQTRAVQ
Ga0209038_102272061	3300027737	Bog Forest Soil	MQRFLAHGLALALVVSLGAAQGPNNSGATPARSNTA
Ga0209074_103853411	3300027787	Agricultural Soil	MQRRIAHGLAIALATACLGAAQGPNISEAKSAPSS
Ga0209039_103256431	3300027825	Bog Forest Soil	MRGRIAHGLMIALLIVGLGAAQGPNNSEASSAPIR
Ga0209167_101780792	3300027867	Surface Soil	MQRRIAHGLALAFLYASLGAAQGPNISEAKPAPSSSTQTKSE
Ga0209167_103133682	3300027867	Surface Soil	MRRRIAQGLMIGLLIVGLGAAQAPNTSEASSAPTSPNRNKAVD
Ga0209624_111280381	3300027895	Forest Soil	MRGRIAHGLMIALLVVGLGAAQGPNNSEGSSAQTR
Ga0209067_105152272	3300027898	Watersheds	MRRCIAHGLAIAFLIVGLGAAQGPNISEAKPAPGS
Ga0209698_100307336	3300027911	Watersheds	MRRCIAHGLAIAFLIVGLGAAQGPNISEAKPAPGSS
Ga0209698_102267113	3300027911	Watersheds	MRRRTAHGLAIAFLIVGLGAAQGPNISEAKPAPGSSV
Ga0209698_104655572	3300027911	Watersheds	MQPRLAHGLAIAVLIAGLGAAQGPNISEATPAPISSFRIKPEVRK
Ga0209698_107586081	3300027911	Watersheds	MQPRLAHGLTIAVLIVGLGAAQGPNISEATPAPISSFRIKPEVRKQAG
Ga0209698_108865951	3300027911	Watersheds	MQRRLAHGLAIACMIAGLGAAQGPNISEATPAPISSFRIKPEVRKQ
Ga0302152_103121751	3300028572	Bog	MRGRIAHGLMIGLLVVGLGAAQGPNNSEASSAPSRSTQIQ
Ga0302156_104549081	3300028748	Bog	MHGRTAQALMIAFLIVGLGAAQGPNSSEASSAPNRAVP
Ga0311352_103083022	3300029944	Palsa	MRRTIAQGLAIAFLIAGTGAAQGPNNSEATPAPIS
Ga0311352_106085601	3300029944	Palsa	MRGRIAHGLMIALLVVGLRAAQGPNDSEASSAPTRAVQ
Ga0311338_114820511	3300030007	Palsa	MRGRIAHGLMIAFLVVGLGAAQGPNNSEASSAPTET
Ga0302306_101365992	3300030043	Palsa	MRGCIARGLAIACLIAYLGAAQGPNISEATAAPVSSVQANPEI
Ga0302179_100319151	3300030058	Palsa	MRRTIAQGLAIAFLIAGTGAAQGPNNSEATPAPISSTRI
Ga0311370_113658021	3300030503	Palsa	MQRRIAHGLMIGVLIVGLRAAQGPNSSEASSAPTRAVQAKPE
Ga0311372_130451731	3300030520	Palsa	MRRCIAHGLAIACLIVGLGAAQGPNISEATAAPVSSVQTKPEVRQ
Ga0074029_16619931	3300031051	Soil	MQRSIAHGLMIALLVVGLGAAQGPNNSEASSAPNKSSQAKTWSNLT
Ga0170823_151681351	3300031128	Forest Soil	MRRCIAQGVAIACLIVGLGAAQGPNISEATAAPVS
Ga0310686_1126729763	3300031708	Soil	MRRRLAHGLMVGLLIVGLGAAKGPNNSEASSAAST
Ga0335080_117134361	3300032828	Soil	MQRRLAHGLTIASLIVGLGAAQGPNISEAKPAPVSSTQTKPVVR
Ga0335081_102067581	3300032892	Soil	MHRRIAHGLAIGFLIVGLGAAQGPNISEAKPAPVSSVRQ
Ga0335072_107601592	3300032898	Soil	MRRRLAHGLAMASLIVGLGAAQGPNISEAKPAPVSSTPMKLEV
Ga0335083_110095031	3300032954	Soil	MRRRIAHGLAIAFLIVGLGAAQGPNSSEAKPAPISSI
Ga0316214_10727941	3300033545	Roots	MRRSIAHGLMILFAIVGLRAAQGPNSSEASSAPTRPIQP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060277

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign