Metagenome / Metatranscriptome Family F060439

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060439
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	56 residues
Representative Sequence	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTPRGQ
Number of Associated Samples	96
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.31 %
% of genes near scaffold ends (potentially truncated)	24.06 %
% of genes from short scaffolds (< 2000 bps)	79.70 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.406 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.023 % of family members)
Environment Ontology (ENVO)	Unclassified (21.053 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (28.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.18% β-sheet: 0.00% Coil/Unstructured: 78.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00440	TetR_N	3.76
PF00990	GGDEF	1.50
PF04214	DUF411	1.50
PF06863	DUF1254	1.50
PF13411	MerR_1	1.50
PF14559	TPR_19	1.50
PF04052	TolB_N	1.50
PF13579	Glyco_trans_4_4	0.75
PF14659	Phage_int_SAM_3	0.75
PF01627	Hpt	0.75
PF00005	ABC_tran	0.75
PF08031	BBE	0.75
PF05013	FGase	0.75
PF12700	HlyD_2	0.75
PF03092	BT1	0.75
PF02321	OEP	0.75
PF13763	DUF4167	0.75
PF13358	DDE_3	0.75
PF01941	AdoMet_Synthase	0.75
PF00171	Aldedh	0.75
PF00126	HTH_1	0.75
PF03466	LysR_substrate	0.75
PF03734	YkuD	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	1.50
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.50
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	1.50
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.50
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.75
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.75
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.75
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1812	Archaeal S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.75
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.75
COG3741	N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.75
COG3931	Predicted N-formylglutamate amidohydrolase	Amino acid transport and metabolism [E]	0.75
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.41 %
Unclassified	root	N/A	37.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	57.14 %
Unclassified	root	N/A	37.59 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.38 %
Unclassified	root	N/A	37.59 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.37 %
Unclassified	root	N/A	37.59 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	35.34 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.26 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.75 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	27.82 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	4.51 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	3.01 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	27.82 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	2.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1.50 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1.50 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.75 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.75 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.75 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.59 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	27.82 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	2.26 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.26 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1.50 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1.50 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.75 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.75 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.75 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.75 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002124\|C687J26631_10153696	Not Available	771	Open in IMG/M
3300002503\|C687J35164_10001941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	7330	Open in IMG/M
3300003465\|P52013CM_1035879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1313	Open in IMG/M
3300005045\|Ga0071328_122433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2010	Open in IMG/M
3300005045\|Ga0071328_152877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1984	Open in IMG/M
3300005162\|Ga0066814_10032643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300005164\|Ga0066815_10047766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	698	Open in IMG/M
3300005169\|Ga0066810_10053903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	794	Open in IMG/M
3300005332\|Ga0066388_100436582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	1952	Open in IMG/M
3300005332\|Ga0066388_100987776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1408	Open in IMG/M
3300005332\|Ga0066388_103641975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	786	Open in IMG/M
3300005332\|Ga0066388_104210557	Not Available	733	Open in IMG/M
3300005363\|Ga0008090_14105320	Not Available	971	Open in IMG/M
3300005529\|Ga0070741_10132058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	2550	Open in IMG/M
3300005529\|Ga0070741_10186785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2033	Open in IMG/M
3300005713\|Ga0066905_100316581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1232	Open in IMG/M
3300005713\|Ga0066905_100604609	Not Available	929	Open in IMG/M
3300005713\|Ga0066905_100821671	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005713\|Ga0066905_101873504	Not Available	554	Open in IMG/M
3300005764\|Ga0066903_106266876	Not Available	621	Open in IMG/M
3300005937\|Ga0081455_10044157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3891	Open in IMG/M
3300005937\|Ga0081455_10124092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	2030	Open in IMG/M
3300006844\|Ga0075428_100201943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2149	Open in IMG/M
3300006845\|Ga0075421_100643884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	1239	Open in IMG/M
3300006847\|Ga0075431_101070175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	772	Open in IMG/M
3300006865\|Ga0073934_10193829	Not Available	1390	Open in IMG/M
3300009100\|Ga0075418_10436552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1402	Open in IMG/M
3300009100\|Ga0075418_10606078	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300009146\|Ga0105091_10120727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1214	Open in IMG/M
3300009146\|Ga0105091_10170372	Not Available	1028	Open in IMG/M
3300009146\|Ga0105091_10379560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	701	Open in IMG/M
3300009147\|Ga0114129_12597979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	604	Open in IMG/M
3300009157\|Ga0105092_10042035	All Organisms → cellular organisms → Bacteria	2443	Open in IMG/M
3300009157\|Ga0105092_10230071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1039	Open in IMG/M
3300009157\|Ga0105092_10740891	Not Available	573	Open in IMG/M
3300009166\|Ga0105100_10522749	Not Available	724	Open in IMG/M
3300009167\|Ga0113563_10732546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1112	Open in IMG/M
3300009168\|Ga0105104_10209307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1060	Open in IMG/M
3300009553\|Ga0105249_11208325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	827	Open in IMG/M
3300009678\|Ga0105252_10524965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	546	Open in IMG/M
3300009792\|Ga0126374_11770381	Not Available	516	Open in IMG/M
3300009807\|Ga0105061_1038360	Not Available	699	Open in IMG/M
3300009815\|Ga0105070_1006707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	1819	Open in IMG/M
3300009815\|Ga0105070_1078869	Not Available	633	Open in IMG/M
3300009837\|Ga0105058_1054481	Not Available	899	Open in IMG/M
3300010154\|Ga0127503_11004632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	728	Open in IMG/M
3300012948\|Ga0126375_12103581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300012957\|Ga0164303_11043323	Not Available	585	Open in IMG/M
3300012958\|Ga0164299_10190334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1176	Open in IMG/M
3300012961\|Ga0164302_10915301	Not Available	675	Open in IMG/M
3300012984\|Ga0164309_10371076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1057	Open in IMG/M
3300013294\|Ga0120150_1063205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	709	Open in IMG/M
3300014318\|Ga0075351_1104859	Not Available	615	Open in IMG/M
3300014823\|Ga0120170_1026420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1534	Open in IMG/M
3300015371\|Ga0132258_13803237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1028	Open in IMG/M
3300017792\|Ga0163161_12103053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	502	Open in IMG/M
3300018028\|Ga0184608_10315427	Not Available	687	Open in IMG/M
3300018076\|Ga0184609_10472058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	574	Open in IMG/M
3300018429\|Ga0190272_12075746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	605	Open in IMG/M
3300018469\|Ga0190270_10475250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1183	Open in IMG/M
3300019233\|Ga0184645_1124798	Not Available	539	Open in IMG/M
3300019458\|Ga0187892_10001554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	51712	Open in IMG/M
3300019458\|Ga0187892_10001979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	43782	Open in IMG/M
3300019458\|Ga0187892_10006204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17997	Open in IMG/M
3300019458\|Ga0187892_10007264	All Organisms → cellular organisms → Bacteria → Proteobacteria	15879	Open in IMG/M
3300019458\|Ga0187892_10015124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8453	Open in IMG/M
3300019487\|Ga0187893_10043977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4686	Open in IMG/M
3300019487\|Ga0187893_10811100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	567	Open in IMG/M
3300025119\|Ga0209126_1116946	Not Available	736	Open in IMG/M
3300025159\|Ga0209619_10239577	Not Available	994	Open in IMG/M
3300025160\|Ga0209109_10220062	Not Available	930	Open in IMG/M
3300025164\|Ga0209521_10660917	Not Available	513	Open in IMG/M
3300025310\|Ga0209172_10554702	Not Available	520	Open in IMG/M
3300025312\|Ga0209321_10467435	Not Available	576	Open in IMG/M
3300025313\|Ga0209431_10130586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300025313\|Ga0209431_10767073	Not Available	705	Open in IMG/M
3300025318\|Ga0209519_10231997	Not Available	1082	Open in IMG/M
3300025324\|Ga0209640_10154865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1961	Open in IMG/M
3300025324\|Ga0209640_10175790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1826	Open in IMG/M
3300025325\|Ga0209341_10247398	Not Available	1480	Open in IMG/M
3300025325\|Ga0209341_10787387	Not Available	722	Open in IMG/M
3300025325\|Ga0209341_11276013	Not Available	513	Open in IMG/M
3300025326\|Ga0209342_10087589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2888	Open in IMG/M
3300025961\|Ga0207712_11729896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	560	Open in IMG/M
3300025985\|Ga0210117_1075469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	588	Open in IMG/M
3300027056\|Ga0209879_1066046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	576	Open in IMG/M
3300027379\|Ga0209842_1049395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	764	Open in IMG/M
3300027511\|Ga0209843_1065627	Not Available	630	Open in IMG/M
3300027523\|Ga0208890_1026144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	862	Open in IMG/M
3300027675\|Ga0209077_1181424	Not Available	588	Open in IMG/M
3300027722\|Ga0209819_10099853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300027743\|Ga0209593_10058437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1470	Open in IMG/M
3300027909\|Ga0209382_12270514	Not Available	511	Open in IMG/M
3300027952\|Ga0209889_1109966	Not Available	547	Open in IMG/M
3300027954\|Ga0209859_1024515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1039	Open in IMG/M
3300028587\|Ga0247828_10095961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1394	Open in IMG/M
3300028597\|Ga0247820_10235832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1177	Open in IMG/M
3300030606\|Ga0299906_10799863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	701	Open in IMG/M
3300030606\|Ga0299906_11325549	Not Available	514	Open in IMG/M
3300030620\|Ga0302046_11098435	Not Available	629	Open in IMG/M
3300031114\|Ga0308187_10334810	Not Available	579	Open in IMG/M
3300031256\|Ga0315556_1017656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3263	Open in IMG/M
3300031274\|Ga0307442_1016062	Not Available	2816	Open in IMG/M
3300031274\|Ga0307442_1042507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1468	Open in IMG/M
3300031331\|Ga0307432_1051057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300031360\|Ga0307444_1069590	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300031537\|Ga0307419_10264370	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300031539\|Ga0307380_10135240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2474	Open in IMG/M
3300031565\|Ga0307379_10235698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	1847	Open in IMG/M
3300031575\|Ga0315532_1200697	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300031720\|Ga0307469_10123202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1880	Open in IMG/M
3300031740\|Ga0307468_101346396	Not Available	653	Open in IMG/M
3300031740\|Ga0307468_102222932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	531	Open in IMG/M
3300031772\|Ga0315288_10090293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3528	Open in IMG/M
3300031772\|Ga0315288_10857232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	830	Open in IMG/M
3300031949\|Ga0214473_10012450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9978	Open in IMG/M
3300031949\|Ga0214473_10259472	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300031949\|Ga0214473_11540845	Not Available	669	Open in IMG/M
3300031965\|Ga0326597_11394837	Not Available	679	Open in IMG/M
3300031965\|Ga0326597_11493411	Not Available	649	Open in IMG/M
3300031999\|Ga0315274_10508706	Not Available	1359	Open in IMG/M
3300031999\|Ga0315274_10969881	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300032164\|Ga0315283_11273860	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	764	Open in IMG/M
3300032180\|Ga0307471_100018615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5003	Open in IMG/M
3300032180\|Ga0307471_102579168	Not Available	644	Open in IMG/M
3300033417\|Ga0214471_10113071	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300033551\|Ga0247830_10266240	Not Available	1303	Open in IMG/M
3300034090\|Ga0326723_0445568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.23%
Host-Associated	Host-Associated	9.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.17%
Aquatic	Environmental → Aquatic	24.06%
Plants	Host-Associated → Plants	9.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.15%
Freshwater	Environmental → Aquatic → Freshwater	14.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.77%
Marine	Environmental → Aquatic → Marine	6.02%
Cave	Environmental → Terrestrial → Cave	5.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.01%
Sediment	Environmental → Aquatic → Sediment	2.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.50%
Peat	Environmental → Terrestrial → Peat	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.83%
Loam	Environmental → Terrestrial → Soil → Loam	17.29%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.02%
Sand	Environmental → Terrestrial → Soil → Sand	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.26%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	5.26%
Lake	Environmental → Aquatic → Freshwater → Lake	3.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.26%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.50%
Clay	Environmental → Terrestrial → Soil → Clay	1.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.27%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	8.27%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.77%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.26%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	5.26%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.01%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.50%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.75%
Mine Drainage	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage	0.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.02%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	8.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.77%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.76%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.76%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	3.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.26%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.50%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.50%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	1.50%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.75%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.75%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Mine Drainage → Ore Pile And Mine Drainage Contaminated Soil	0.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.75%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002503	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3	Environmental	Open in IMG/M
3300003465	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P5 sample	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300025119	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025985	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027675	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031256	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10	Environmental	Open in IMG/M
3300031274	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30	Environmental	Open in IMG/M
3300031331	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-150	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031537	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-30	Environmental	Open in IMG/M
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental	Open in IMG/M
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental	Open in IMG/M
3300031575	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment WE1603-70	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1035527092	3300001431	Soil	MKTSLVIMLAVAGLAVGTATLAISNPAFAGGGGPDKWCGAVVC
C687J26631_101536962	3300002124	Soil	MKTLLAIALTXVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
C687J35164_100019417	3300002503	Soil	MKTLLAIALTSVLAAATLTFGAPMTPMSGTAVARGNIGPQYWCGAAVCPPQTPKGTHRGY
P52013CM_10358792	3300003465	Ore Pile And Mine Drainage Contaminated Soil	MKTSLAILATALLAAAILTFGAPMTQMSGTAVAGAGGPDKWCGAAVCPSQHPPWIHRGR*
Ga0071328_1224331	3300005045	Permafrost	MKTLLAIALLAAGMLTFGAPVTPMSGTAVAGGGGPDKWCGAAVCP
Ga0071328_1528771	3300005045	Permafrost	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPRQTKPAPASQRGL*
Ga0066814_100326432	3300005162	Soil	MKTLLAVMLAATALMIGAATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGTHRGP*
Ga0066815_100477662	3300005164	Soil	MKTSLAIVLAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPPKQAPSGTLLGQ*
Ga0066810_100539032	3300005169	Soil	MKTSLTIVLAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPP
Ga0066388_1004365823	3300005332	Tropical Forest Soil	MKTLLAIALAVAALTIGTATVAPISSIAVAGGGGPDKWCGAAVCPPKQTQSGTHSGP*
Ga0066388_1009877763	3300005332	Tropical Forest Soil	MKTSLAIMLAVATLAIGTATLAISNPAFAGGGGPDKWCGAAVCPPKQTQSGAHRGS*
Ga0066388_1036419752	3300005332	Tropical Forest Soil	MKTSLAIMLAVATLAVGTATLAISSPVFAGGGGPDKWCGAAVCPPKLIQSGAHRGS*
Ga0066388_1042105571	3300005332	Tropical Forest Soil	MKAFLAFALAAAVLTIGVATVTPMSGAAVAGVPDKWCGAPVCPPRHPPWIRGR*
Ga0008090_141053203	3300005363	Tropical Rainforest Soil	MKTLLAIALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0070741_101320583	3300005529	Surface Soil	MKTLLTIALVAAALTIGTAGVAPISGTAVAGGGGPDKWCGAQVCPPNPKTQSGTYQTHRR
Ga0070741_101867851	3300005529	Surface Soil	MRTLLAILLASGLLTFGAPVKPISGTAIAGGGGPDKWCGAQVCPPKPHRGW*
Ga0066905_1003165811	3300005713	Tropical Forest Soil	MKTSLAIMLAVAALTISTVTVAPISSTAYAGGGGPDKWCGAVVCPPKQIRSGAHGGS*
Ga0066905_1003554873	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAGCARRISNSQERIVGGKPQ*
Ga0066905_1006046092	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVARGGGPDKWCGAAVCPPKLQQSGMHRGQ*
Ga0066905_1008216713	3300005713	Tropical Forest Soil	MKTSLAIMLAVATLAVGTATLTNPAFAGGGGPDKWCGAAVCPPKQIQSGAHRGS*
Ga0066905_1014639841	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATMAPIFNTAVAGGGGAWQPPDKWCGAAGCAHRISNSQERIVGGKPQ*
Ga0066905_1018735041	3300005713	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNLQRLGTHRGR*
Ga0066903_1062668762	3300005764	Tropical Forest Soil	MKTLLAIALAVAALTIGTATVAPISTTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0081455_100441573	3300005937	Tabebuia Heterophylla Rhizosphere	MKTSLAIVLLAAVALTFGAPVTPISGTAVAGGGGPEKWCGAQVCPPNPRTQSGTHRGQ*
Ga0081455_101240923	3300005937	Tabebuia Heterophylla Rhizosphere	MKTLLAIALAVAALAIGTAIVSPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0075428_1002019432	3300006844	Populus Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0075421_1006438841	3300006845	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS*
Ga0075431_1010701752	3300006847	Populus Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNP
Ga0073934_101938293	3300006865	Hot Spring Sediment	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAICPSPRPPWTYRGR*
Ga0075418_104365522	3300009100	Populus Rhizosphere	MKTSLAIIFTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAHRGS*
Ga0075418_106060781	3300009100	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWSGAVVCPPKQIQSGAYRGS*
Ga0105091_101207272	3300009146	Freshwater Sediment	MKTSLAIMLAVAALAVGTVTLAISNPAFAGGGGPDKWCGAVVCP
Ga0105091_101703721	3300009146	Freshwater Sediment	MKTSLAIMLAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNLQRLGTHRGR*
Ga0105091_103795602	3300009146	Freshwater Sediment	MKTLLAITLAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR*
Ga0114129_125979791	3300009147	Populus Rhizosphere	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKLIQSGAHRGS*
Ga0105092_100420353	3300009157	Freshwater Sediment	MKTSQAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCSPKQIQSGAYRGS*
Ga0105092_102300712	3300009157	Freshwater Sediment	MKTSLAIALAVAALTIGTATVAPISSTAVAGDGRPDKWCGAAACAPRQTQPATQ
Ga0105092_107408911	3300009157	Freshwater Sediment	MKTLLAIALAVAALTIGTATVAPISSTAVAGGAGPDKWCGAAVCPPRQTQLGTHRGR*
Ga0105100_105227492	3300009166	Freshwater Sediment	MKTSLAIVLAVAALTIGTATIAPISSTAVAGGGGPDNWCGAAWCPPRQTQSGTHRGP*
Ga0113563_107325461	3300009167	Freshwater Wetlands	MKTSLAIMLAVAALTIGTATVQPISSTAVAGGGGPDKWCGAAVCPPTPTQSGTHRGS*
Ga0105104_102093072	3300009168	Freshwater Sediment	MKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCSPKQIQSGAYRGS*
Ga0105249_112083251	3300009553	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWFGAAACPANLQRLGTHRGR*
Ga0105252_105249652	3300009678	Soil	MKTSLAIVLAVAVLTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPL
Ga0126374_117703812	3300009792	Tropical Forest Soil	MKTLLAVALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQLGMRGQ*
Ga0105061_10383601	3300009807	Groundwater Sand	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR*
Ga0105070_10067072	3300009815	Groundwater Sand	MKTSLAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS*
Ga0105070_10788691	3300009815	Groundwater Sand	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAVCPPKQTPLGTHRGR*
Ga0105058_10544811	3300009837	Groundwater Sand	MKTLLAIALLAAGMLTFGAPVTPMSGTAAAGGGGPDKWCGAAVCPPKKPYPGTHRGW*
Ga0127503_110046322	3300010154	Soil	MIVLVIGDRKRSAEMKTLLAIALAVAALTIGTATVAPISSTAMAGGGGPDKWCGAAVCPP
Ga0126375_104347932	3300012948	Tropical Forest Soil	MKTLLAIALAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAGCAHRISNSQERIVGGRPQ*
Ga0126375_121035812	3300012948	Tropical Forest Soil	MKTLLAIALAVAALTIGTATMAPIFNTAVAGGGGAWQPPDKWCGAAGCAHRISNSQE
Ga0164303_110433231	3300012957	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGAGPDKWCGAAVCPPKQTQSGTYRGP*
Ga0164299_101903342	3300012958	Soil	MKTSLAIILAVAAMTIGTATIPPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTHGRA*
Ga0164302_109153011	3300012961	Soil	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTYRER*
Ga0164309_103710762	3300012984	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPPKQAPSGTLLGQ*
Ga0120150_10632051	3300013294	Permafrost	MKTLLAIALAAATLTFGATLTPISSTAVAGGGGPDKWCGAAVCPPKQTPHSGTYRGP*
Ga0075351_11048591	3300014318	Natural And Restored Wetlands	MKTSLAIMLAVAALTIGSATVMPISSTAFAGGGGPDKWCGAAICPPKQKLSATYHRP*
Ga0120170_10264201	3300014823	Permafrost	MKTLLAIALAAATLTFGATLTPISSTAVAGGGGPDKWCGAAVCPPKQTPHSGTHR
Ga0132258_138032372	3300015371	Arabidopsis Rhizosphere	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPKQTQSGTPRGQ*
Ga0163161_121030532	3300017792	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAVCPPNLQRLGT
Ga0184608_103154271	3300018028	Groundwater Sediment	MKTLLAIALLAAGMLTFGAAVIPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHRG
Ga0184609_104720581	3300018076	Groundwater Sediment	MKTSLAIVLAVAALTIGTATIAPISSTAVAGGGGPDKWCGAVVCPTKQTQSGTHRGP
Ga0190272_120757462	3300018429	Soil	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPRQTKPAPASQRGL
Ga0190270_104752503	3300018469	Soil	MKTLLAIALAVAALTIGTATVSPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR
Ga0184645_11247981	3300019233	Groundwater Sediment	MKTLLAIALLAAGMLTFGAAVTPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHRGW
Ga0187892_100015543	3300019458	Bio-Ooze	MKTSLAIALAVAALTIGTASVAPISSTALAGGGGPDKWCGATVCPPRPTHFGTHRGS
Ga0187892_100019791	3300019458	Bio-Ooze	MKAFLVFALAAAALTIGVATVTPISGIAVAGGGGPEKWCGAAV
Ga0187892_100062047	3300019458	Bio-Ooze	MRTLLAILFALGLLTFGAPVTPISGTAVAGGGGPDKWCGAAVCPTKQPPWIRGR
Ga0187892_100072641	3300019458	Bio-Ooze	MKTFLVFALAAAALTIGVATVTPISGIAVAGGGGPEKWCGAAV
Ga0187892_100151243	3300019458	Bio-Ooze	MKTSLAIMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0187893_100439776	3300019487	Microbial Mat On Rocks	MKTLLAIALLAAGMLTFGSPVTPMSGTAVAGGGGPDKWCGAAICPTQTPPGTHRGR
Ga0187893_108111001	3300019487	Microbial Mat On Rocks	MKTSLAIALAVAALTIGTATVAPISSTAVAVNGKPYKWCCAAACAPRGTKPAPESQRGL
Ga0209126_11169462	3300025119	Soil	MKTLLAIALTVAALTIGTATVAPISSTAIAGGGGPVKWCGAAACAHRFGPQ
Ga0209619_102395772	3300025159	Soil	MKTSLAIVLAFGLAAATLTFGAAVTPISGTAVAGGGGPDKWCGAAICPPKQTPLGTYRGR
Ga0209109_102200621	3300025160	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPPKQTPLGTYRGR
Ga0209521_106609172	3300025164	Soil	MKTSLAIVLAFGLAAATLTFGAAVTPISGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0209172_105547022	3300025310	Hot Spring Sediment	MKTLLAIALAAAALMIGTATVAPISGTAVAGGGGPDKWCGAAICPSPRPP
Ga0209321_104674352	3300025312	Soil	MKTLLAIALTLVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0209431_101305861	3300025313	Soil	TSRTITLAAATLLLAAAVLTLGTTVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0209431_107670732	3300025313	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPP
Ga0209519_102319971	3300025318	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0209640_101548651	3300025324	Soil	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAVCPPKQLPLGTYRGR
Ga0209640_101757902	3300025324	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPLKQTQSGTHRGP
Ga0209341_102473982	3300025325	Soil	MKTSLAILTIVLLAAAALTVGAPATPISGTAIAGGNIGPQYWCGAAVCPPKQTPLGTYRG
Ga0209341_107873872	3300025325	Soil	MKTSRTITLAAATLLLAAAVLTLGTTVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0209341_112760131	3300025325	Soil	MKALLAIVLLAAGMLTFGSTVAPISGTAVAGGGGPDKWCGAAICPTQAPPGTHRGR
Ga0209342_100875894	3300025326	Soil	MKTSRTIALAAATLLLAAAALTLGATVTPISGTAVAGGGGPDKWCGAAVCPPKQTPVPYRGR
Ga0207712_117298962	3300025961	Switchgrass Rhizosphere	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLGTHRG
Ga0210117_10754692	3300025985	Natural And Restored Wetlands	MKKSLAIALAVAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPRQTQL
Ga0209879_10660461	3300027056	Groundwater Sand	MKTSLAIMLAVAALTIGTATIAPISSTAVAGGGGPDKWCGAAVCPPR
Ga0209842_10493952	3300027379	Groundwater Sand	MKTSLAIALAVAALTIGTATMAPISSTAVAGGSGPDKWCGAAVCPPRQTQSGWHRGP
Ga0209843_10656271	3300027511	Groundwater Sand	MKTSLAIVLAFVLAAATLTFGAPVTPMSGTAVAGGGGPDKWCGAAICPPK
Ga0208890_10261441	3300027523	Soil	MKTLLAIALAVAALTIGAATVAPISSTAVAGGGGPDKWCGAAVCPPQQTQSGTYRGR
Ga0209077_11814242	3300027675	Freshwater Sediment	MKTLLAIALAAAALTIGTATVAPISSTAVAGGGGPDKWCGAAVCPPNPLGAHRGR
Ga0209819_100998532	3300027722	Freshwater Sediment	MKTSLAIMLAVAALAVGTVTLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAHRGS
Ga0209593_100584372	3300027743	Freshwater Sediment	MKTLLAIALAVAALTIGTATVAPISNIAVAGGGGPDKWCGAAVCPPT
Ga0209382_122705141	3300027909	Populus Rhizosphere	AAMKTSLAIMLTVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0209889_11099661	3300027952	Groundwater Sand	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAVVCPTKQTQSGTHRGP
Ga0209859_10245152	3300027954	Groundwater Sand	MKTSLAIVLAVAALTIGTATMAPISRTAVAGGGGPDKWCGAAICPTQAPPWIHRGR
Ga0247828_100959611	3300028587	Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLGTHRGR
Ga0247828_112347491	3300028587	Soil	MKTSLAIVLAAAALTIGTATVAPIFSTAVAGGGGAWQPPDKWCGAAACAHGISNSQERIVGGKPQ
Ga0247820_102358322	3300028597	Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQRLETHRGR
Ga0299906_107998632	3300030606	Soil	MKTSLAIVLAVAALTIGTATMAPISSTAVAGGGGPDKWCGAAVCPTKQTQSGTHRGP
Ga0299906_113255491	3300030606	Soil	MKTLLAIVLTSALAVATLTFGAPVTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0302046_110984351	3300030620	Soil	MKTSLAIVLASVLAAATLTFGAPVTPMSGTAVAGGNIGPQYWCGATICPPKKTYPGTHRG
Ga0308187_103348101	3300031114	Soil	MKTLLAIALLAAGMLTFGAAVIPMSGTAVAGNGGPDKWCGAAVCPPKKTYPGTHR
Ga0315556_10176564	3300031256	Salt Marsh Sediment	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHHCR
Ga0307442_10160621	3300031274	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGTALAGGGGPDKWCGGAMCPRRPLEVHHCR
Ga0307442_10425071	3300031274	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHHCH
Ga0307432_10510573	3300031331	Salt Marsh	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPLEVHH
Ga0307444_10695901	3300031360	Salt Marsh	MKTLLAIALTAATLTIGTATMAPISGIALAGGGGPDKWCGGAMCPRRPLEVNHCR
Ga0307419_102643701	3300031537	Salt Marsh	MKTLLAIALTAATLTIGTATVAPISGTALAGGGGPDKWCGGAICPRRQAPLEVHHCR
Ga0307380_101352401	3300031539	Soil	MKTSLAIMLAVAALTIGTATVAPISSTAVAGDDRPYKWCGAAACAPGQTKPAPASQRGL
Ga0307379_102356983	3300031565	Soil	MKTLLAIALAATTLTIGTATVAPISGTALAGGGGPDKWCGAVVCPPKPAPLGTHRGR
Ga0315532_12006972	3300031575	Salt Marsh Sediment	MKTLLAIALTAATLTIGTAIVAPISGIALAGGGGPDKWCGGAMCPRRPL
Ga0307469_101232022	3300031720	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGCGPDKWCGATACPPNLQRLGTHRGR
Ga0307468_1013463962	3300031740	Hardwood Forest Soil	MKTLLAIALATAALTIGTATVAPISNTAVAGGGGPDKWCGAAVCPPKLQQSGMHRGE
Ga0307468_1022229321	3300031740	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGRGPDKWCGAAACPPNLQRLGTHRGR
Ga0315288_100902933	3300031772	Sediment	MKTSLAIVLAVAALTIGTATVAPFSSTAVAGGGGPDKWCGAAVCPPKQAPSGTHVGQ
Ga0315288_108572321	3300031772	Sediment	MKTSLAIVLAAAALTIGTATVAPISSIAIAGGGGPDKWCGATVCPPKQAPSGTYLGR
Ga0214473_1001245010	3300031949	Soil	MKTLLAIALTSVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTPKGTHRGY
Ga0214473_102594723	3300031949	Soil	MKTLLAIVLTLVLAAATLTFGAPTTPIPGTAVAGGNIGPQYWCGATVCPTPKPPWTSDRGRR
Ga0214473_115408451	3300031949	Soil	MKTLLAIVLLAAALTIGTATVAPISGTAVAGGGGPDKWCGAAVCPPKQTPLGTYRGR
Ga0326597_113948372	3300031965	Soil	MKTSLAMMLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0326597_114934112	3300031965	Soil	MKTSLAIVLASVLAAATLTFGAPVTPMSGTAVAGGNIGPQYWCGATICPPKKTYP
Ga0315274_105087062	3300031999	Sediment	MKTSLAIVLAVAALTIGTATVAPFSSTAVAGGGGPDKWCGAAVCPPKQALSGTHVGQ
Ga0315274_109698811	3300031999	Sediment	TSLAIVLAAAALTIGTATVAPISSIAIAGGGGPDKWCGATVCPPKQAPSGTYLGR
Ga0315283_112738601	3300032164	Sediment	MNTSLAIVLAAAALTIGTATVAPISSTAIAGGGGPDKWCGAAVCPPKRAPSGIHLGR
Ga0307471_1000186151	3300032180	Hardwood Forest Soil	MKTSLAIVLAVAALTIGTATVAPISSPAVAGGGGPDKWCGAAACPPNLQR
Ga0307471_1025791681	3300032180	Hardwood Forest Soil	MKTLLAIALAAAALTIGTATVAPISSTAVASGGGPDKWCGAAVCPPKQTQSGTLRGP
Ga0214471_101130714	3300033417	Soil	MKTLLAIALTLVLAAATLTFGAPMTPMSGTAVAGGNIGPQYWCGAAVCPPQTP
Ga0247830_102662403	3300033551	Soil	SERSAAMKTSLAIVLAVAALAVGTATLAISNPAFAGGGGPDKWCGAVVCPPKQIQSGAYRGS
Ga0326723_0445568_65_238	3300034090	Peat Soil	MKTSLAIVLAVAALTIGTAGVAPISSTAFAGGGGPDKWCGAVVCPPKQIQSGAHGGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060439

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences