Metagenome Family F060554

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060554
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	39 residues
Representative Sequence	HVTVHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Number of Associated Samples	88
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.27 %
% of genes near scaffold ends (potentially truncated)	92.42 %
% of genes from short scaffolds (< 2000 bps)	93.94 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (79.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (56.061 % of family members)
Environment Ontology (ENVO)	Unclassified (86.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (57.576 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.97% β-sheet: 0.00% Coil/Unstructured: 53.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00176	SNF2-rel_dom	0.76
PF09250	Prim-Pol	0.76
PF00476	DNA_pol_A	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
All Organisms	root	All Organisms	20.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
cellular organisms	root	All Organisms → cellular organisms	19.70 %
Viruses	superkingdom	All Organisms → Viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.67 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.67 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.03 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.76 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.76 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.76 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Shinella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella	2.27 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.76 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.76 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.76 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.76 %
Aurantimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
unclassified Shinella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella	2.27 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.76 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.76 %
unclassified Aurantimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas	0.76 %
unclassified Lachnospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae	0.76 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.55 %
Shinella sp. DD12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	2.27 %
Lachnospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	0.76 %
Aurantimonas sp. MSK8Z-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas → Aurantimonas sp. MSK8Z-1	0.76 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.76 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.76 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101967077	Not Available	504	Open in IMG/M
3300005364\|Ga0070673_102064737	Not Available	541	Open in IMG/M
3300005614\|Ga0068856_102678839	Not Available	504	Open in IMG/M
3300005764\|Ga0066903_104287921	Not Available	762	Open in IMG/M
3300005844\|Ga0068862_102765276	Not Available	502	Open in IMG/M
3300009148\|Ga0105243_11681584	Not Available	663	Open in IMG/M
3300009176\|Ga0105242_11300905	Not Available	751	Open in IMG/M
3300010046\|Ga0126384_10380055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium	1186	Open in IMG/M
3300010366\|Ga0126379_10790807	All Organisms → Viruses → Predicted Viral	1047	Open in IMG/M
3300010366\|Ga0126379_11263308	Not Available	845	Open in IMG/M
3300010398\|Ga0126383_13119844	Not Available	541	Open in IMG/M
3300012958\|Ga0164299_10923207	Not Available	636	Open in IMG/M
3300012971\|Ga0126369_10319145	Not Available	1562	Open in IMG/M
3300012971\|Ga0126369_12462193	Not Available	606	Open in IMG/M
3300016270\|Ga0182036_10098332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1983	Open in IMG/M
3300016270\|Ga0182036_10250567	Not Available	1325	Open in IMG/M
3300016270\|Ga0182036_10990086	Not Available	692	Open in IMG/M
3300016270\|Ga0182036_11332482	Not Available	599	Open in IMG/M
3300016294\|Ga0182041_10743790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872	Open in IMG/M
3300016294\|Ga0182041_11684613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	587	Open in IMG/M
3300016294\|Ga0182041_12267779	Not Available	508	Open in IMG/M
3300016319\|Ga0182033_10137138	Not Available	1867	Open in IMG/M
3300016341\|Ga0182035_10250808	Not Available	1428	Open in IMG/M
3300016341\|Ga0182035_10312737	Not Available	1292	Open in IMG/M
3300016341\|Ga0182035_11055889	Not Available	722	Open in IMG/M
3300016341\|Ga0182035_11254143	Not Available	663	Open in IMG/M
3300016341\|Ga0182035_11811875	Not Available	553	Open in IMG/M
3300016357\|Ga0182032_10238339	Not Available	1407	Open in IMG/M
3300016357\|Ga0182032_10337357	Not Available	1202	Open in IMG/M
3300016357\|Ga0182032_11819394	Not Available	532	Open in IMG/M
3300016371\|Ga0182034_11344211	Not Available	624	Open in IMG/M
3300016404\|Ga0182037_11202367	Not Available	666	Open in IMG/M
3300016422\|Ga0182039_10822195	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300016422\|Ga0182039_11526455	Not Available	609	Open in IMG/M
3300016445\|Ga0182038_11660705	Not Available	575	Open in IMG/M
3300028720\|Ga0307317_10172358	Not Available	729	Open in IMG/M
3300028906\|Ga0308309_11666564	Not Available	542	Open in IMG/M
3300031543\|Ga0318516_10632053	Not Available	610	Open in IMG/M
3300031544\|Ga0318534_10347744	Not Available	854	Open in IMG/M
3300031544\|Ga0318534_10659958	Not Available	592	Open in IMG/M
3300031544\|Ga0318534_10789096	Not Available	534	Open in IMG/M
3300031545\|Ga0318541_10128015	Not Available	1383	Open in IMG/M
3300031545\|Ga0318541_10231919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1024	Open in IMG/M
3300031561\|Ga0318528_10526533	Not Available	635	Open in IMG/M
3300031561\|Ga0318528_10640985	Not Available	569	Open in IMG/M
3300031561\|Ga0318528_10664053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	558	Open in IMG/M
3300031564\|Ga0318573_10098319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1499	Open in IMG/M
3300031572\|Ga0318515_10764322	Not Available	510	Open in IMG/M
3300031573\|Ga0310915_11182783	Not Available	529	Open in IMG/M
3300031668\|Ga0318542_10355108	Not Available	754	Open in IMG/M
3300031679\|Ga0318561_10367915	Not Available	789	Open in IMG/M
3300031680\|Ga0318574_10796182	Not Available	554	Open in IMG/M
3300031681\|Ga0318572_10050889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2230	Open in IMG/M
3300031681\|Ga0318572_10152742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1334	Open in IMG/M
3300031681\|Ga0318572_10296580	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300031681\|Ga0318572_10526767	Not Available	704	Open in IMG/M
3300031682\|Ga0318560_10095387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1534	Open in IMG/M
3300031713\|Ga0318496_10283573	Not Available	914	Open in IMG/M
3300031719\|Ga0306917_11258506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aurantimonas → unclassified Aurantimonas → Aurantimonas sp. MSK8Z-1	573	Open in IMG/M
3300031723\|Ga0318493_10261955	Not Available	926	Open in IMG/M
3300031744\|Ga0306918_10021188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3943	Open in IMG/M
3300031744\|Ga0306918_10748526	Not Available	764	Open in IMG/M
3300031744\|Ga0306918_10919352	Not Available	681	Open in IMG/M
3300031744\|Ga0306918_10992890	Not Available	652	Open in IMG/M
3300031747\|Ga0318502_10819220	Not Available	565	Open in IMG/M
3300031748\|Ga0318492_10757363	Not Available	521	Open in IMG/M
3300031763\|Ga0318537_10207101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	729	Open in IMG/M
3300031763\|Ga0318537_10347227	Not Available	548	Open in IMG/M
3300031764\|Ga0318535_10058779	Not Available	1623	Open in IMG/M
3300031768\|Ga0318509_10143307	All Organisms → cellular organisms → Bacteria → Proteobacteria	1315	Open in IMG/M
3300031768\|Ga0318509_10750019	Not Available	541	Open in IMG/M
3300031768\|Ga0318509_10774464	Not Available	531	Open in IMG/M
3300031770\|Ga0318521_10037215	Not Available	2435	Open in IMG/M
3300031771\|Ga0318546_10045209	Not Available	2712	Open in IMG/M
3300031771\|Ga0318546_10108627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1829	Open in IMG/M
3300031777\|Ga0318543_10538204	Not Available	523	Open in IMG/M
3300031792\|Ga0318529_10321050	Not Available	721	Open in IMG/M
3300031794\|Ga0318503_10203278	Not Available	642	Open in IMG/M
3300031797\|Ga0318550_10414114	Not Available	652	Open in IMG/M
3300031798\|Ga0318523_10678236	Not Available	506	Open in IMG/M
3300031805\|Ga0318497_10693435	Not Available	571	Open in IMG/M
3300031819\|Ga0318568_10940860	Not Available	534	Open in IMG/M
3300031832\|Ga0318499_10212878	Not Available	753	Open in IMG/M
3300031833\|Ga0310917_10440524	Not Available	886	Open in IMG/M
3300031846\|Ga0318512_10191956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	996	Open in IMG/M
3300031859\|Ga0318527_10104618	Not Available	1164	Open in IMG/M
3300031859\|Ga0318527_10535059	Not Available	500	Open in IMG/M
3300031879\|Ga0306919_10662635	Not Available	804	Open in IMG/M
3300031880\|Ga0318544_10170148	Not Available	838	Open in IMG/M
3300031880\|Ga0318544_10294750	Not Available	629	Open in IMG/M
3300031890\|Ga0306925_11803057	Not Available	586	Open in IMG/M
3300031893\|Ga0318536_10167708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1117	Open in IMG/M
3300031893\|Ga0318536_10686864	Not Available	510	Open in IMG/M
3300031910\|Ga0306923_10227939	Not Available	2131	Open in IMG/M
3300031910\|Ga0306923_10419669	Not Available	1521	Open in IMG/M
3300031910\|Ga0306923_10927820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	952	Open in IMG/M
3300031910\|Ga0306923_11216665	Not Available	804	Open in IMG/M
3300031912\|Ga0306921_11431767	Not Available	758	Open in IMG/M
3300031941\|Ga0310912_10174264	Not Available	1635	Open in IMG/M
3300031942\|Ga0310916_11331038	Not Available	590	Open in IMG/M
3300031946\|Ga0310910_11267890	Not Available	570	Open in IMG/M
3300031946\|Ga0310910_11290650	Not Available	564	Open in IMG/M
3300031947\|Ga0310909_10223723	Not Available	1568	Open in IMG/M
3300031947\|Ga0310909_10656718	Not Available	873	Open in IMG/M
3300031954\|Ga0306926_11649919	Not Available	734	Open in IMG/M
3300031959\|Ga0318530_10013464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2673	Open in IMG/M
3300031981\|Ga0318531_10130309	Not Available	1119	Open in IMG/M
3300032001\|Ga0306922_10405308	Not Available	1460	Open in IMG/M
3300032035\|Ga0310911_10386009	Not Available	810	Open in IMG/M
3300032043\|Ga0318556_10229608	Not Available	967	Open in IMG/M
3300032044\|Ga0318558_10443743	Not Available	647	Open in IMG/M
3300032052\|Ga0318506_10441113	Not Available	577	Open in IMG/M
3300032052\|Ga0318506_10447496	Not Available	573	Open in IMG/M
3300032052\|Ga0318506_10462894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	562	Open in IMG/M
3300032054\|Ga0318570_10209732	Not Available	880	Open in IMG/M
3300032055\|Ga0318575_10018164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	2894	Open in IMG/M
3300032059\|Ga0318533_10643254	Not Available	778	Open in IMG/M
3300032060\|Ga0318505_10191736	Not Available	955	Open in IMG/M
3300032060\|Ga0318505_10400136	Not Available	649	Open in IMG/M
3300032066\|Ga0318514_10057782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	1892	Open in IMG/M
3300032067\|Ga0318524_10286624	Not Available	851	Open in IMG/M
3300032076\|Ga0306924_11415175	Not Available	741	Open in IMG/M
3300032090\|Ga0318518_10052153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	1949	Open in IMG/M
3300032090\|Ga0318518_10300259	Not Available	824	Open in IMG/M
3300032091\|Ga0318577_10015356	Not Available	3096	Open in IMG/M
3300032261\|Ga0306920_100494211	Not Available	1816	Open in IMG/M
3300032261\|Ga0306920_102822907	Not Available	661	Open in IMG/M
3300032261\|Ga0306920_103408367	Not Available	590	Open in IMG/M
3300032261\|Ga0306920_103633352	Not Available	567	Open in IMG/M
3300032897\|Ga0335071_11718875	Not Available	571	Open in IMG/M
3300033290\|Ga0318519_10357974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	863	Open in IMG/M
3300033550\|Ga0247829_11701388	Not Available	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.21%
Host-Associated	Host-Associated	3.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.21%
Plants	Host-Associated → Plants	3.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.94%
Loam	Environmental → Terrestrial → Soil → Loam	1.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	86.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	56.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1019670771	3300000364	Soil	PGQTQRVTVHVCVAAGTVDEMKRDRVLGKMSAQDAFKRHLERV*
Ga0070673_1020647372	3300005364	Switchgrass Rhizosphere	YRPGQTQHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFKRHLERV*
Ga0068856_1026788391	3300005614	Corn Rhizosphere	HVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFKRHLERV*
Ga0066903_1042879211	3300005764	Tropical Forest Soil	ARHVTVHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLEQI*
Ga0068862_1027652761	3300005844	Switchgrass Rhizosphere	GQTQHVTVHVCVAVGTIDEMKRDRVMGKMSAQEAFRRHLEQV*
Ga0105243_116815842	3300009148	Miscanthus Rhizosphere	RLTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV*
Ga0105242_113009052	3300009176	Miscanthus Rhizosphere	VTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV*
Ga0126384_103800551	3300010046	Tropical Forest Soil	RPGQRQHVTIHVCIAAGTVDEMKRDRVLGKLSAQEAFKRYLAQI*
Ga0126379_107908073	3300010366	Tropical Forest Soil	PGQTRHVTVHVCVAMHTVDEMKRNRVLGKMSAQEAFRRHLEQI*
Ga0126379_112633081	3300010366	Tropical Forest Soil	QHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV*
Ga0126383_131198442	3300010398	Tropical Forest Soil	GQTRHVTIHVCVATRTVDEMKRDRVLGKMSAQEAFRRHLEQI*
Ga0164299_109232071	3300012958	Soil	VTIHVCVAAGTVDEMKRDRVLGKMSAQEAFKRHLERV
Ga0126369_103191451	3300012971	Tropical Forest Soil	HVTVHVCVAVGTVDEMKRDRVINKMSAQEAFRRHLERI*
Ga0126369_124621933	3300012971	Tropical Forest Soil	YRPGQTRHVTVHLCVVAETVDEMKRDRLIGKISAQEAFRRHLEQI*
Ga0182036_100983323	3300016270	Soil	VTVHVCIATGTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0182036_102505673	3300016270	Soil	VTVHVCVAAGTVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0182036_109900862	3300016270	Soil	MRRQHVTTHVCVAAATVDEMKRDRVIGKMRAQEAFKRHLERV
Ga0182036_113324821	3300016270	Soil	VTIHICVATSTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0182041_107437901	3300016294	Soil	RPGQTRHVTIHICVAMGTVDEMKRNRVLGKMTAQEAFRRHLEQI
Ga0182041_116846132	3300016294	Soil	TRHVTVHVCIATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0182041_122677791	3300016294	Soil	HVTVHVCIATRTVDEMKRDRVLGKFSAQEAFRRHLEQI
Ga0182033_101371381	3300016319	Soil	RPGQTQHVTIHVCVAAGTVDEMKRNRVVNKMSAQEAFRRHLEQV
Ga0182035_102508082	3300016341	Soil	VTVHVCVAAGTVDEMKRNRVLGKMSAQEAFRRHLEQV
Ga0182035_103127373	3300016341	Soil	TRHVTVHVCVAAGTVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0182035_110558893	3300016341	Soil	IFRPGQTQHVTIHVCVAAATVDDMKRDRVIGKMSAQEAFKRHLEQV
Ga0182035_112541433	3300016341	Soil	IHICVAMGTVDEMKRNRVLGKMTAQEAFRRHLEQI
Ga0182035_118118751	3300016341	Soil	VTVHVCVAAGTVDEMKRDRVIGKMSAQEAFRRHLERV
Ga0182032_102383391	3300016357	Soil	GQTRHVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0182032_103373571	3300016357	Soil	GQTRHVTVHVCIATGTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0182032_118193943	3300016357	Soil	GQTRHVTIHVCVAMGTVDEMKRNRVLGKTSAQEAFRRHLEQI
Ga0182034_113442111	3300016371	Soil	IHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLEQV
Ga0182037_112023671	3300016404	Soil	TIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV
Ga0182039_108221953	3300016422	Soil	FRPGQTRHVTVHVCVAAGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0182039_115264551	3300016422	Soil	GQTRHVTVHVCVATGTVDEMKRDRVLGKMTAQEAFRRHLEQI
Ga0182038_116607051	3300016445	Soil	VTVHVCVATRTVDEMKRDRVINKMSAQEAFKRHLEQM
Ga0307317_101723583	3300028720	Soil	QHVTIHVCVAAGTVDEMKRDRVINKMSAQEAFRRHLEQI
Ga0308309_116665642	3300028906	Soil	AHVTVHVCVPAGTVDEMKRDRVLGKMSAQEAFRRHLERL
Ga0318516_106320531	3300031543	Soil	HVTVHIVVATGTVDEMKRNRVLNKMSAQEAFRKHLEQI
Ga0318534_103477441	3300031544	Soil	YRPGQTRHVTVHVCVATRTVDEMKRDRVLGKMSAQEAFRKHLEQI
Ga0318534_106599582	3300031544	Soil	HVTVHVCVAAGTVDEMKRDRVIGKMTAQEAFRRHLEQV
Ga0318534_107890961	3300031544	Soil	GQARHVTIHICVALGTDEMKRDRVLRKMSAQEAFRRHLEQI
Ga0318541_101280153	3300031545	Soil	VYRPGQTQHVTVHVCVAAGTVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0318541_102319192	3300031545	Soil	IHVCIATRTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0318528_105265332	3300031561	Soil	IHVCVAMGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318528_106409852	3300031561	Soil	RHVTVHVCIATRTVDEMKRDRVLGKFSAQEAFRRHLEQI
Ga0318528_106640532	3300031561	Soil	IHICVALGTVDEMKRDRVLRKMSAQEAFRRHLEQI
Ga0318573_100983193	3300031564	Soil	RHVTIHVCIATRTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0318515_107643221	3300031572	Soil	PGQTQHVTIHVCVAAATVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0310915_111827831	3300031573	Soil	TVHVCVVAETVDEMKRDRLIGKISAQEAFRRHLEQV
Ga0318542_103551081	3300031668	Soil	TVTCRVCVATRTVDEMKRDRVLGKMSAQEAFRRHLEQV
Ga0318561_103679152	3300031679	Soil	IHVCVAAGTVDEMKRDRVIGKMTAQEAFRRHLEQI
Ga0318574_107961823	3300031680	Soil	HVTIHVCIAAGTVDEMKRNRVIGKMSAQEAFRRHLEQV
Ga0318572_100508894	3300031681	Soil	PLHVCIATRTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0318572_101527423	3300031681	Soil	YRPGQTRHVTVHVCIATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318572_102965801	3300031681	Soil	PGQTRHVTVHVCVATRTVDEMKRDRVIRKMSAQQAFARHLKQI
Ga0318572_105267672	3300031681	Soil	HVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318560_100953873	3300031682	Soil	NGHVCIATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318496_102835731	3300031713	Soil	GQTRHVTIHVCVAAGTVDEMKRDRVIGKMTAQEAFRRHLEQI
Ga0306917_112585063	3300031719	Soil	VHVCVVAETVDEMKRDRLIGKISAQEAFRRHLEQV
Ga0318493_102619551	3300031723	Soil	GQTRHVTIHVCVATRTVDEMKRNRVLGKMSAQEAFKQHLEQI
Ga0306918_100211882	3300031744	Soil	VTVHVCVAAGTVDEMKRDRVIGKMTAQEAFRRHLEQV
Ga0306918_107485261	3300031744	Soil	IHDCVATGTVDEMKRDRVLGKMSAQEAFRRHLERV
Ga0306918_109193522	3300031744	Soil	HVTVHVCVATGTVDEMKRDRVLGKLSAQEAFRRHLEQI
Ga0306918_109928901	3300031744	Soil	TIHVRIAAGTVDEMKRDRVLGKMSAQEAFKRHLERV
Ga0318502_108192202	3300031747	Soil	IYRPGQTQHVTVHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318492_107573632	3300031748	Soil	HVTVHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318537_102071011	3300031763	Soil	TIHVCIATRTVDEMKRDRVLSKMSAQEAFRRHLEQI
Ga0318537_103472271	3300031763	Soil	HVTVHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318535_100587794	3300031764	Soil	PGQTQHVTVHIVVATGTVDEMKRNRVLNKMSAQEAFRKHLEQI
Ga0318509_101433071	3300031768	Soil	HVTVHVCVATRTVDEMKRDRVIRKMSAQQAFARHLKQI
Ga0318509_107500192	3300031768	Soil	QTQHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLERV
Ga0318509_107744642	3300031768	Soil	PGQTQHVTIHVCMAVGTVDEMKRDRVLGKMSAQETFRRHLERV
Ga0318521_100372151	3300031770	Soil	YRPGQTQHVTVHIVVATGTVDEMKRNRVLNKMSAQEAFRKHLEQI
Ga0318546_100452093	3300031771	Soil	SHVCIATRTVDEMKRDRVLGKMNAQEAFGRHLEQI
Ga0318546_101086273	3300031771	Soil	GQTRHVTVHVCNATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318543_105382041	3300031777	Soil	VHVCVATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318529_103210501	3300031792	Soil	RPGQARHVTIHICVATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318503_102032781	3300031794	Soil	YRPGQTRHVTVHVCVAAGTVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0318550_104141141	3300031797	Soil	QTRHVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318523_106782362	3300031798	Soil	GQTRHVTVHVCIAIGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318497_106934351	3300031805	Soil	VTVHVCVATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318568_109408601	3300031819	Soil	QARHVTVHVCIATRTVDEMKRDRVLGKFSAQEAFRRHLEQI
Ga0318499_102128782	3300031832	Soil	HVTIHICVATGTVDEMKRNRVLGKMSAQEAFRRHLEEI
Ga0310917_104405242	3300031833	Soil	HVTVHVCIATGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318512_101919561	3300031846	Soil	QTRRVTIHICIAMHTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318527_101046181	3300031859	Soil	GQSRRVTIHVCVAVGTVDEMKRDRVLGKMSAQEAFRRHLERARR
Ga0318527_105350592	3300031859	Soil	TIHVCVAADTVDEMKRDRVIRKLSAQEAFKKHLERI
Ga0306919_106626351	3300031879	Soil	VHVCVATGTVDEMKRDRVLGKLSAQEAFRRHLEQI
Ga0318544_101701481	3300031880	Soil	RHVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318544_102947501	3300031880	Soil	PGQARHVTVHVCIATRTVDEMKRDRVLGKFSAQEAFRRHLEQI
Ga0306925_118030572	3300031890	Soil	RYVTIHVCIAAGTVDEMKRDRVIGKMSAQEAFRRHLEQI
Ga0318536_101677081	3300031893	Soil	QTRHVTIHVCIATRTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318536_106868642	3300031893	Soil	TRHVTIHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLERV
Ga0306923_102279391	3300031910	Soil	TRHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLEQV
Ga0306923_104196691	3300031910	Soil	YRPGQTRHVTVHVCVVAETVDEMKRDRLIGKISAQEAFRRHLEQV
Ga0306923_109278202	3300031910	Soil	YRPGQARHVTIHVCVAMGTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0306923_112166653	3300031910	Soil	PGQTRHVTVHVCVATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0306921_114317672	3300031912	Soil	RPGQTRHVTVHVCVARGTVDEMKRNRVLGKMSAQEAFRRHLEEI
Ga0310912_101742641	3300031941	Soil	HVTVHVCIATGTVDEMKCNRVLGKMTAQEAFRRYLERI
Ga0310916_113310383	3300031942	Soil	YRPGQPRHVTVHVCVAAGTIDEMKRDRVIGKMSAQEAFKRHLERI
Ga0310910_112678901	3300031946	Soil	QHVTVHVCVAAGTVDEMKRDRVLGKMSAQEAFRRYLERI
Ga0310910_112906501	3300031946	Soil	IYRPGQTRHVTVHVCVAAGTVDEMKRDRVIGKMSAQEAFRRHLERV
Ga0310909_102237232	3300031947	Soil	VTIHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLGQI
Ga0310909_106567181	3300031947	Soil	QTRHVTVHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0306926_116499192	3300031954	Soil	IYRPGQTQHVTIHVCVAAGTVDEMKRDRVINKMSEQEAFRRHLEQI
Ga0318530_100134644	3300031959	Soil	RPGQTRHVTIHICVAAGTVDEMKRDRVIGKMDAQEAFKHHLEQI
Ga0318531_101303093	3300031981	Soil	YRPGQTRHVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0306922_104053081	3300032001	Soil	VTVHVCVAAGTVDEMKRDRVINKMSAQEAFRRHLEQV
Ga0310911_103860091	3300032035	Soil	GQTRHVTIHVCVATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318556_102296081	3300032043	Soil	TQHVTIHVCIATRTVDEMKRDRVLGKMNAQEAFGRHLEQI
Ga0318558_104437431	3300032044	Soil	IHVCIATRTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318506_104411132	3300032052	Soil	RHVTIHICVATGTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0318506_104474962	3300032052	Soil	QHVTVHVCVAAGTVDAMKRDRVLGKMSAQEAFKRHLEGV
Ga0318506_104628942	3300032052	Soil	RVTIHVCIATRTVDEMKRDRVLGKMSAQEAFRRHLEQI
Ga0318570_102097321	3300032054	Soil	VHIVVATGTVDEMKRNRVLNKMSAQEAFRKHLEQI
Ga0318575_100181641	3300032055	Soil	YRPGQTRHVTVHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLGQI
Ga0318533_106432542	3300032059	Soil	YRPGQTRHVTIHVCVATRTVDEMKRDRVIGKMSAQEAFKRHLEQI
Ga0318505_101917361	3300032060	Soil	PGQTRHVTIHVCVAAGTVDEMKRDRVIGKMSAQEAFRRHLERV
Ga0318505_104001361	3300032060	Soil	TVHVCIATGTVDEMKRDRVLGKMSAQEAFRRYLERI
Ga0318514_100577823	3300032066	Soil	HVTIHVCVATGTVDEMKRDRVLGKMSAQEAFRRHLGQI
Ga0318524_102866243	3300032067	Soil	IHICIAMHTVDEMKRNRVLGKMSAQEAFRRHLEQI
Ga0306924_114151752	3300032076	Soil	VTVHVCVATRTVDEMKHDRVLGKMSAQEAFRRHLEQI
Ga0318518_100521531	3300032090	Soil	VTIHVCVAAGTVDEMKRDRVLGKMSAQEAFRRHLGQI
Ga0318518_103002592	3300032090	Soil	VTVHVCVAAGTVDEMKRDRVIGKMDAQEAFRRHLEQV
Ga0318577_100153564	3300032091	Soil	VTVHIVVATGTVDEMKRNRVLNKMSAQEAFRKHLEQI
Ga0306920_1004942112	3300032261	Soil	VTVHVCVATGTVDEMKRDRVLGKMSAQDAFRRHLERI
Ga0306920_1028229073	3300032261	Soil	YRPGQTRHVTVHVCVAAGTIDEMKRDRVIGKMSAQEAFKRHLERI
Ga0306920_1034083671	3300032261	Soil	IHVCVATRTVDEMKRDRVLCKMSAQEAFRRHLEQI
Ga0306920_1036333522	3300032261	Soil	QTRHVTIHVCVAAGTVDEMKRNRVIGKMDAQEAFKLHLEQI
Ga0335071_117188752	3300032897	Soil	IHVCVATGTVDEMKRNRVLNKMSAQDAFRRHLEQI
Ga0318519_103579741	3300033290	Soil	QHVTIHVCVAAATVDEMKRDRVIGKMSAQEAFKRHLEQL
Ga0247829_117013881	3300033550	Soil	VTCWVCVAAGTVDEMKRDRVIGKMSAQEAFRRHLEQI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060554

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences