Metagenome Family F060651

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060651
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	58 residues
Representative Sequence	LSGSSLAGLSITEIPLGYGLFCSTYDFVVACYLMISDTAWHTSGKFDLYFWRHRL
Number of Associated Samples	91
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.53 %
% of genes near scaffold ends (potentially truncated)	94.70 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.273 % of family members)
Environment Ontology (ENVO)	Unclassified (43.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.53% β-sheet: 0.00% Coil/Unstructured: 67.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF04392	ABC_sub_bind	15.15
PF05694	SBP56	7.58
PF02798	GST_N	4.55
PF13417	GST_N_3	4.55
PF03401	TctC	3.03
PF07859	Abhydrolase_3	2.27
PF00589	Phage_integrase	2.27
PF01430	HSP33	1.52
PF07045	DUF1330	1.52
PF00248	Aldo_ket_red	1.52
PF08734	GYD	1.52
PF00072	Response_reg	0.76
PF13191	AAA_16	0.76
PF02211	NHase_beta	0.76
PF01734	Patatin	0.76
PF01494	FAD_binding_3	0.76
PF03237	Terminase_6N	0.76
PF00211	Guanylate_cyc	0.76
PF17201	Cache_3-Cache_2	0.76
PF07969	Amidohydro_3	0.76
PF00144	Beta-lactamase	0.76
PF01135	PCMT	0.76
PF00324	AA_permease	0.76
PF09539	DUF2385	0.76
PF14023	DUF4239	0.76
PF13181	TPR_8	0.76
PF05231	MASE1	0.76
PF12697	Abhydrolase_6	0.76
PF00083	Sugar_tr	0.76
PF14224	DUF4331	0.76
PF13924	Lipocalin_5	0.76
PF00536	SAM_1	0.76
PF13419	HAD_2	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	15.15
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.03
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	2.27
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.52
COG1281	Redox-regulated molecular chaperone, HSP33 family	Posttranslational modification, protein turnover, chaperones [O]	1.52
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.52
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.52
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.76
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.76
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.76
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.76
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.76
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.76
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.76
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.76
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.76
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.76
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.76
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.76
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.76
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.76
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.76
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.76
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.76
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.76
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.36 %
Unclassified	root	N/A	22.73 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.88 %
Unclassified	root	N/A	22.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.27 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.64 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.61 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	5.30 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.30 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	5.30 %
Microbulbiferaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae	1.52 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.76 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.33 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	5.30 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.30 %
Microbulbifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer	1.52 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.76 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	5.30 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.30 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.27 %
Microbulbifer yueqingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer yueqingensis	1.52 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.76 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.76 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.76 %
Paraburkholderia bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Rhodovulum sp. P5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	5.30 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.30 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	2.27 %
Microbulbifer yueqingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer yueqingensis	1.52 %
unclassified Desulfuromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas	0.76 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.76 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.76 %
Paraburkholderia bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Rhodovulum sp. P5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	5.30 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.30 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	2.27 %
Microbulbifer yueqingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer yueqingensis	1.52 %
Desulfuromonas sp. TF	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. TF	0.76 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.76 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.76 %
Paraburkholderia bryophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01B47Q5	Not Available	527	Open in IMG/M
2170459009\|GA8DASG01DPQ3X	Not Available	517	Open in IMG/M
2170459012\|GOYVCMS01ERR7H	Not Available	508	Open in IMG/M
2189573004\|GZGWRS402JDNNG	Not Available	510	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1048141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300005093\|Ga0062594_101063704	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300005093\|Ga0062594_103190762	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005172\|Ga0066683_10368722	All Organisms → cellular organisms → Bacteria → Proteobacteria	890	Open in IMG/M
3300005178\|Ga0066688_10219848	All Organisms → cellular organisms → Bacteria → Proteobacteria	1210	Open in IMG/M
3300005331\|Ga0070670_100725573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300005332\|Ga0066388_101962906	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300005332\|Ga0066388_106998702	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → unclassified Desulfuromonas → Desulfuromonas sp. TF	567	Open in IMG/M
3300005334\|Ga0068869_100753402	All Organisms → cellular organisms → Bacteria → Proteobacteria	834	Open in IMG/M
3300005713\|Ga0066905_100430317	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300005719\|Ga0068861_100735467	Not Available	920	Open in IMG/M
3300005764\|Ga0066903_100730662	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300005764\|Ga0066903_101178812	All Organisms → cellular organisms → Bacteria → Proteobacteria	1420	Open in IMG/M
3300005764\|Ga0066903_101326194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	1346	Open in IMG/M
3300005764\|Ga0066903_101489582	Not Available	1277	Open in IMG/M
3300005764\|Ga0066903_101631006	All Organisms → cellular organisms → Bacteria → Proteobacteria	1225	Open in IMG/M
3300005764\|Ga0066903_101688734	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300005764\|Ga0066903_102213877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1060	Open in IMG/M
3300005764\|Ga0066903_103418914	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300005764\|Ga0066903_104454858	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300005764\|Ga0066903_108231884	Not Available	533	Open in IMG/M
3300005764\|Ga0066903_108748884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300005764\|Ga0066903_108773835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	513	Open in IMG/M
3300005937\|Ga0081455_10174583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1633	Open in IMG/M
3300005937\|Ga0081455_10730991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	628	Open in IMG/M
3300006058\|Ga0075432_10434886	Not Available	573	Open in IMG/M
3300006903\|Ga0075426_10351866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1083	Open in IMG/M
3300006904\|Ga0075424_101064424	Not Available	862	Open in IMG/M
3300006904\|Ga0075424_101154263	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300009156\|Ga0111538_10692740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1291	Open in IMG/M
3300009792\|Ga0126374_10138410	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300010047\|Ga0126382_10090889	All Organisms → cellular organisms → Bacteria	1941	Open in IMG/M
3300010359\|Ga0126376_12157232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300010360\|Ga0126372_12896784	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300010361\|Ga0126378_13378949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300010362\|Ga0126377_11255076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	812	Open in IMG/M
3300010366\|Ga0126379_13536363	Not Available	523	Open in IMG/M
3300010376\|Ga0126381_101275150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300010398\|Ga0126383_11774221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300010863\|Ga0124850_1000951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7389	Open in IMG/M
3300010863\|Ga0124850_1031244	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300012209\|Ga0137379_10085837	All Organisms → cellular organisms → Bacteria → Proteobacteria	3028	Open in IMG/M
3300012359\|Ga0137385_10448082	Not Available	1096	Open in IMG/M
3300012907\|Ga0157283_10384013	Not Available	517	Open in IMG/M
3300012916\|Ga0157310_10279377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300012958\|Ga0164299_11515215	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012971\|Ga0126369_10440913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1349	Open in IMG/M
3300012971\|Ga0126369_12522823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300012971\|Ga0126369_12551432	Not Available	596	Open in IMG/M
3300012971\|Ga0126369_13326707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer yueqingensis	527	Open in IMG/M
3300014315\|Ga0075350_1157821	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300014319\|Ga0075348_1053653	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M
3300014320\|Ga0075342_1070605	Not Available	877	Open in IMG/M
3300016270\|Ga0182036_10454331	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300016294\|Ga0182041_10177482	Not Available	1674	Open in IMG/M
3300016294\|Ga0182041_11045843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300016319\|Ga0182033_11936700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	536	Open in IMG/M
3300016319\|Ga0182033_12158924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	508	Open in IMG/M
3300016357\|Ga0182032_10625354	Not Available	898	Open in IMG/M
3300016371\|Ga0182034_11081449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	695	Open in IMG/M
3300016371\|Ga0182034_11418791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer yueqingensis	607	Open in IMG/M
3300016422\|Ga0182039_10703005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	891	Open in IMG/M
3300016422\|Ga0182039_10898329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	791	Open in IMG/M
3300016422\|Ga0182039_11192793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	687	Open in IMG/M
3300016445\|Ga0182038_10138820	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300016445\|Ga0182038_10402325	Not Available	1148	Open in IMG/M
3300020581\|Ga0210399_11467948	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300021168\|Ga0210406_10050347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3650	Open in IMG/M
3300025898\|Ga0207692_10662425	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300026118\|Ga0207675_100583311	Not Available	1120	Open in IMG/M
3300026374\|Ga0257146_1029473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	891	Open in IMG/M
3300026860\|Ga0207823_109427	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	686	Open in IMG/M
3300026910\|Ga0207840_1019448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	678	Open in IMG/M
3300027646\|Ga0209466_1104580	Not Available	574	Open in IMG/M
3300027703\|Ga0207862_1140795	Not Available	722	Open in IMG/M
3300028906\|Ga0308309_10365726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1232	Open in IMG/M
3300031170\|Ga0307498_10122280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	830	Open in IMG/M
3300031229\|Ga0299913_11889326	Not Available	544	Open in IMG/M
3300031360\|Ga0307444_1008086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3996	Open in IMG/M
3300031379\|Ga0307434_1008116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4040	Open in IMG/M
3300031545\|Ga0318541_10249381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	986	Open in IMG/M
3300031545\|Ga0318541_10342025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	835	Open in IMG/M
3300031545\|Ga0318541_10708895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	562	Open in IMG/M
3300031561\|Ga0318528_10010501	All Organisms → cellular organisms → Bacteria → Proteobacteria	4190	Open in IMG/M
3300031561\|Ga0318528_10170409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1162	Open in IMG/M
3300031573\|Ga0310915_10010447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5362	Open in IMG/M
3300031679\|Ga0318561_10153840	Not Available	1235	Open in IMG/M
3300031682\|Ga0318560_10384840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300031682\|Ga0318560_10796787	Not Available	510	Open in IMG/M
3300031719\|Ga0306917_11413114	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300031723\|Ga0318493_10506421	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031736\|Ga0318501_10219350	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300031736\|Ga0318501_10747995	Not Available	540	Open in IMG/M
3300031744\|Ga0306918_10425826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1036	Open in IMG/M
3300031748\|Ga0318492_10406524	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300031768\|Ga0318509_10166774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1219	Open in IMG/M
3300031781\|Ga0318547_10204526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1180	Open in IMG/M
3300031781\|Ga0318547_11053526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	509	Open in IMG/M
3300031792\|Ga0318529_10501693	Not Available	564	Open in IMG/M
3300031792\|Ga0318529_10607516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031794\|Ga0318503_10194788	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031796\|Ga0318576_10026537	Not Available	2359	Open in IMG/M
3300031798\|Ga0318523_10541086	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300031798\|Ga0318523_10587576	Not Available	548	Open in IMG/M
3300031820\|Ga0307473_10725947	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031879\|Ga0306919_11109176	Not Available	603	Open in IMG/M
3300031897\|Ga0318520_10128203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1452	Open in IMG/M
3300031910\|Ga0306923_11540412	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300031910\|Ga0306923_11767438	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300031944\|Ga0310884_10603547	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300031945\|Ga0310913_10401912	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300031954\|Ga0306926_12324357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	593	Open in IMG/M
3300032001\|Ga0306922_10084862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3330	Open in IMG/M
3300032001\|Ga0306922_10149532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia bryophila	2496	Open in IMG/M
3300032001\|Ga0306922_11827440	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300032035\|Ga0310911_10066534	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300032035\|Ga0310911_10843877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	529	Open in IMG/M
3300032090\|Ga0318518_10123102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. P5	1307	Open in IMG/M
3300032090\|Ga0318518_10458744	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300032090\|Ga0318518_10678090	Not Available	524	Open in IMG/M
3300032094\|Ga0318540_10248867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	858	Open in IMG/M
3300032261\|Ga0306920_100538659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1731	Open in IMG/M
3300032261\|Ga0306920_100826652	All Organisms → cellular organisms → Bacteria → Proteobacteria	1358	Open in IMG/M
3300032261\|Ga0306920_100896845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1296	Open in IMG/M
3300033289\|Ga0310914_11108987	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300033290\|Ga0318519_10009349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3938	Open in IMG/M
3300033433\|Ga0326726_11674371	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.67%
Host-Associated	Host-Associated	8.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.15%
Plants	Host-Associated → Plants	8.33%
Aquatic	Environmental → Aquatic	1.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.79%
Marine	Environmental → Aquatic → Marine	1.52%
Peat	Environmental → Terrestrial → Peat	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.70%
Loam	Environmental → Terrestrial → Soil → Loam	17.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.27%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.27%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.76%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.03%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.27%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.27%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.52%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031379	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_08840530	2170459005	Grass Soil	DLSHCLSGTSLAGLSITEIPLGYGIFCLTYDFTVAWYLMISDTAWHESGKFDLYFWRHRL
F47_08512970	2170459009	Grass Soil	GYVMHGLWDLSHCLWGSSFAGLSITEIPLGYGLFCSTFDFTVAGYLMISDTAWHASGKLDLYFWRHL
N56_07964360	2170459012	Grass Soil	VRDLSHCLWGSSFAGLSITEIPLGYGLFCSTFDFTVAGYLMISDTAWHAPGKLDLYFWRH
FG2_07971730	2189573004	Grass Soil	SGSSLAGLSITEIPLGYGIFCSTYDFTVACYLMTSDTAWHEPGKLDLYFWRHRQSLN
AF_2010_repII_A100DRAFT_10481411	3300000655	Forest Soil	ASLAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTAWHEPGRFDLYFWRTPTR*
Ga0062594_1010637042	3300005093	Soil	LAGLSMTDIPLGYGIFCSTYDFTVASYLVTSDTAWHAPGKLDLYFWRHRP*
Ga0062594_1031907622	3300005093	Soil	RVINALAQSLTEIPLGYDTFYSTYDFVVAYYLMTSDTAWHESGKFDLFFWRHRP*
Ga0066683_103687221	3300005172	Soil	AHCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA*
Ga0066688_102198481	3300005178	Soil	WDLSHCLSGSSLAGVPITDIPLGYGIFCSAFDFVVAAYLMISNAAWHKLGKFDPYFWRHIADEVIE*
Ga0070670_1007255732	3300005331	Switchgrass Rhizosphere	SSLAGLSITEIPLGYGIFCSTYDFTVACYLIISDTAWHEPGKLDLYFWRTDKV*
Ga0066388_1019629061	3300005332	Tropical Forest Soil	GTSLAGLSITEIPLGYGIFCSTYDFTVAGYLMISDTAWHEAGKFNPYFWRHSP*
Ga0066388_1069987021	3300005332	Tropical Forest Soil	GTSLAGLSITEIPLGYGIFCSTYDFTVAGYLMISDTAWHEPGKFNPYFWRLAHDPAHP*
Ga0068869_1007534023	3300005334	Miscanthus Rhizosphere	LSGSSLAGLSITEIPLGYGLFCSTYDFVVACYLMISDTAWHTSGKFDLYFWRHRL*
Ga0066905_1004303173	3300005713	Tropical Forest Soil	WDLSHCLSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMISNTAWHEPGKFDPYFWRHLA*
Ga0068861_1007354671	3300005719	Switchgrass Rhizosphere	FGSSLFGLPMTEIPLGYGMLCLTFDLTVAGYLMMSNTAWDEPGKFDLYFWRNRA*
Ga0066903_1007306621	3300005764	Tropical Forest Soil	LSMTEIPLGYGIFCSTFDFVVAFYLMISDSAWHEAGRFDLYFWRHRP*
Ga0066903_1011788122	3300005764	Tropical Forest Soil	MGSDLSHCLSGSSVAGVSITDIPLGYGIFCSAFDFVVAAYLMIRNTAWDSPGKFNPYFWRHIARADEVIE*
Ga0066903_1013261942	3300005764	Tropical Forest Soil	LSHCLSGSSLAGLSMTETPLGYGIFCSSYDFVVAYYLVISDSAWHEAGKFDLYFWRSRL*
Ga0066903_1014895822	3300005764	Tropical Forest Soil	GLSITEIPLGYGIFCSTYDFMVAYYLSISDTAWHESGKLDLYFWRHHL*
Ga0066903_1016310063	3300005764	Tropical Forest Soil	SSLASLSITETPLAYGIFCSALDFTVACYLMISDTPWHESGKVDLYFWRQRL*
Ga0066903_1016887341	3300005764	Tropical Forest Soil	LWDLSHCLSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMISDTAWHRPGKFDPYFWRHIARADDVIE*
Ga0066903_1022138771	3300005764	Tropical Forest Soil	SHCLSGSSLAGLSITETPLAYGIFCSTLDFTVACYLMLSDTAWHKAGRVDLYFWRQRL*
Ga0066903_1034189141	3300005764	Tropical Forest Soil	LSGTSLAGMSMTDIPLGYGLFCSSYDFVVASYLMMSDSAWNKAGSFDRYFWRRLG*
Ga0066903_1044548582	3300005764	Tropical Forest Soil	SGSSLSGLSMTETPLGYGIFCASYDFVVAYYLMISDSAWREAGKFDLYFWRSRL*
Ga0066903_1082318841	3300005764	Tropical Forest Soil	MSGTSLAGLSITEIPLGYGIFCSTYDFTVAGYLMISDTAWHEAGKFNPYFWRHSP*
Ga0066903_1087488842	3300005764	Tropical Forest Soil	LSMTEIPLGYGIFCSTFDFVVAFYLMISDSAWHEAGRFDLTSGDIAHDPRNVG*
Ga0066903_1087738352	3300005764	Tropical Forest Soil	CLFGASLAGLSMTEIPLGYGIFCSTYDVTVAGYLMMSGSAWQAPGKLDLYFWRHSS*
Ga0081455_101745833	3300005937	Tabebuia Heterophylla Rhizosphere	MHGLWDLSHSLSGSSLAGLSLTAIPLGYDIFCSTFDFVVAGYLTMSDTKWHEPGKLDFY
Ga0081455_107309912	3300005937	Tabebuia Heterophylla Rhizosphere	LSGSSLAGLSLTAIPLGYDIFCSTFDFVVAGYLTISDTKWHEPGKLDFYFWRHSQ*
Ga0075432_104348863	3300006058	Populus Rhizosphere	LWDLSHSLSGSSLAGLSLTAIPLGYDIFCSTFDFVVAGYLTISDTKWHEPGKLDFSFWRHSQ*
Ga0075426_103518661	3300006903	Populus Rhizosphere	HCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA*
Ga0075424_1010644241	3300006904	Populus Rhizosphere	WDLFHGLVGNSPTGESLTQIPLGYDVFCATYDFTVACYLMISDTAWHAPGKFDVYFWRHLP*
Ga0075424_1011542631	3300006904	Populus Rhizosphere	YVMHGLWDLSHSLSGSSLGGLAITEIPLGYDIFCSTYDFIVACYLMISDTA*
Ga0111538_106927401	3300009156	Populus Rhizosphere	LAGLSITEIPLGYGIFCSTYDFTVACYLMISDTAWHEPGKLDLYFWRHRQSLN*
Ga0126374_101384103	3300009792	Tropical Forest Soil	SGTSLAGMSMTDIPLGYGLFCSSYDFVVASYLMMSDSAWNKAGSFDRYFWRRLG*
Ga0126382_100908894	3300010047	Tropical Forest Soil	SHSLSGSSLAGLSLTTIPLGYDIFCSTYDFVVAGYLTISDTKWHERGKLDFYFWRHSQ*
Ga0126376_121572321	3300010359	Tropical Forest Soil	IAVGYVMHGLWVLPHCMSGTSLAGLSITEIALGYGMFFSTYDFTVAGYLMISDTAWHEAGKFNPYFWRHSP*
Ga0126372_128967842	3300010360	Tropical Forest Soil	LSHCLFGASLAGLSMTEIPLGYGIFCSTYDVTVAGYLMMSGSAWQAPGELDLYFWRHSS*
Ga0126378_133789492	3300010361	Tropical Forest Soil	GLWDLSHCLSGVSIAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTGWHGPGRFDLYFWRTPTR*
Ga0126377_112550762	3300010362	Tropical Forest Soil	AGLSITEIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA*
Ga0126379_135363633	3300010366	Tropical Forest Soil	AGVSITDIPLGYGIFCSAFDFVVAAYLMISNTAWHKPGKFDPYFWRQIVRADELVE*
Ga0126381_1012751502	3300010376	Tropical Forest Soil	SGSSLAGLSMTEIPLGYGIFCSTFDFVVAYYLMISDSAWHEAGRFDLYFWRHRP*
Ga0126383_117742211	3300010398	Tropical Forest Soil	LAGLSITEIPLGYGIFCSTYDFTVAGYLMISDTAWHEAGKLNPYFWRHSP*
Ga0124850_10009511	3300010863	Tropical Forest Soil	RFTGGPVDDSHCLSGASLAGLSMTEIPLGYGLFCSTYDFTVACYLMVSDTAWREAGKVDLYFWRHRL*
Ga0124850_10312443	3300010863	Tropical Forest Soil	SHCLSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMTNNTAWHEPGKFDPYFWRHIARADEVVE*
Ga0137379_100858373	3300012209	Vadose Zone Soil	MHGLWDLSHCLSGSSLAGLSITEIPLGYGLFCSTYDFTVACYLMVSDAAWREAGKVDLYFWRHRP*
Ga0137385_104480822	3300012359	Vadose Zone Soil	SHCLSGSSLAGLSITEIPLGYGLFCSTYDFTVACYLMVSDTAWRESGKVDLYFWRLRP*
Ga0157283_103840132	3300012907	Soil	GSSLAGFSMTDIPLGYGIFCSTYDFTVASYLVTSDTAWHAPGKLDLYFWRHRYDPP*
Ga0157310_102793771	3300012916	Soil	SSLFGLPMTEIPLGYGMLCLTFDLTVAGYLMMSNTAWDEPGKFDLYFWRNRA*
Ga0164299_115152152	3300012958	Soil	WDLAHCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRRRA*
Ga0126369_104409133	3300012971	Tropical Forest Soil	SVAGVSITDILLGYGSFCSSFDFVVAAYLMISNAAWHKPGKFDPYFWRQIARVGEVIE*
Ga0126369_125228232	3300012971	Tropical Forest Soil	AGLSMTEIPLGYALFCSTYDFVVAYYLMTSHSAWHASGKFDPYFWRVRPLMTDPR*
Ga0126369_125514322	3300012971	Tropical Forest Soil	MSLTDIPLGYGIFCSTFDFVVAAYLTTSNTAWHKPGKFDPYFWRHIARADE
Ga0126369_133267071	3300012971	Tropical Forest Soil	MHGLWDLIHCLSGSSLAGLSMTQTPLGYGLFCSTFDFVVAAYLLMGNSTWEEAGSFDPYFWRYRP*
Ga0075350_11578212	3300014315	Natural And Restored Wetlands	LSGTSLAGLSITEIPLGYGIFCSSLDFAVACYLMMSNTAWHEPGKFTPHFWRQHP*
Ga0075348_10536531	3300014319	Natural And Restored Wetlands	CLSGTSLAGLSITEIPLGYGIFCSSLDFAVACYLMMSNTAWHEPGKFTPHFWRQHP*
Ga0075342_10706051	3300014320	Natural And Restored Wetlands	GYVMHGLWDLSHSLSGSSFAGLSITEIPVGYGLFCATYDVTVACYIVTSATAWHEPGKFDLYFWQHRS*
Ga0182036_104543313	3300016270	Soil	LRRGRAVVAIGHRDRLRHAWLWDLSHCLAGASLAGLSMTDIPLGYGIFCSSFDFTVAAYLMLSGSAWQKPGKLDLTFWRQGL
Ga0182041_101774823	3300016294	Soil	SGSSLAGLPITETPLGYGIFCSTFDFTVACYLMISDTAWDAPGKIDLNFWRYRL
Ga0182041_110458432	3300016294	Soil	SSIAGLSITDIPLGYGLFCSTYDFVVAGYLMISDTAWHELGKFDLYFWRHSP
Ga0182033_119367002	3300016319	Soil	GSSLAGLSMTETPLGYGIFCSSYDFVVAYYLMISDSAWDEAGKFDLYFWRNRL
Ga0182033_121589242	3300016319	Soil	LAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0182032_106253542	3300016357	Soil	SGSSLAGVSITDIPLGYGIFCSAFDFVVATYLMISNTAWHEPGKFDPYFWRHIARANDVI
Ga0182034_110814492	3300016371	Soil	SGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0182034_114187911	3300016371	Soil	HGLWDLSHCLSGSSLAGLPITETPLGYGIFCSTFDFTVACYLMISDTAWDAPGKIDLNFWRYRL
Ga0182039_107030052	3300016422	Soil	GSSLAGLSMTETPLGYGIFCSSYDFVVAYYLVISDSAWHEAGKFDLYFWRSRL
Ga0182039_108983292	3300016422	Soil	LAHCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSETAWYEPGKLDLYFWRHRA
Ga0182039_111927932	3300016422	Soil	LAHCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0182038_101388201	3300016445	Soil	RDRLRHAWLWDLSHCLAGASLAGLSMTDIPLGYGIFCSSFDFTVAAYLMLSGSAWQKPGKLDLTFWRQGL
Ga0182038_104023253	3300016445	Soil	DLSHCLSGSSLAGLSMTETPLGYGIFCSSYDFVVAYYLMISDSAWDEAGKFDLYFWRNRL
Ga0210399_114679482	3300020581	Soil	AGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRRRA
Ga0210406_100503471	3300021168	Soil	SHCVSGSSLSGLPITEIPLGYGIFCSTYDFTVACYLMISDTAWHAPGKLDLYFWRGP
Ga0207692_106624251	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LSHCVSGSSLSGLPITEIPLGYGIFCSTYDFTVACYLMISDTAWHAPGKLDLYFWRGP
Ga0207675_1005833112	3300026118	Switchgrass Rhizosphere	FGSSLFGLPMTEIPLGYGMLCLTFDLTVAGYLMMSDTAWDEPGKFDLYFWRNRA
Ga0257146_10294732	3300026374	Soil	GLSITEIPLGYGIFCSTYDFMVAGYLMISDTAWHESGKFDLYFWRHRP
Ga0257153_10355623	3300026490	Soil	LSITDIPLGYGIFCSTYDFVVAGYLMVSDTAWHEPGKFDLYFWRHSP
Ga0207823_1094273	3300026860	Tropical Forest Soil	MHGLWDLSHCLSGSSLAGLSMTETPLGYGIFCSSYDFVVAYYLMISDSAWDEAGKFDLYFWRNRL
Ga0207840_10194481	3300026910	Tropical Forest Soil	SSLPGLSMTETPLGYGIFCSSYDFVVAYYLMISDSAWDEAGKFDLYFWRNRL
Ga0209466_11045801	3300027646	Tropical Forest Soil	DLSHCLSGASLAGLSITEIPLGYGLFCSTYDFTVACYLMVSDTAWHEPGKLDLYFWRHRA
Ga0207862_11407952	3300027703	Tropical Forest Soil	SLAGLSMTETPLGYGIFCSTYDFVVACYLMISDTAWHEQGKFDLYFWRHRP
Ga0308309_103657261	3300028906	Soil	GMSITDIPLGYGIFCSTYDYTVACYLMISDTAWHERGKFDPYFWRYRPS
Ga0307498_101222801	3300031170	Soil	GASLAGLSITEIPLGYGIFCSTYDLVVACYLMISDTAWHASGKFDLYFWRHRL
Ga0299913_118893262	3300031229	Soil	LAGVSITEIPLGYGLFCSTYDATVACYLMTSDTAWHEPGKFDLYFWRHRP
Ga0307444_10080865	3300031360	Salt Marsh	MHGLWDIAHSLFGSSLLGLPITEIPLGYGMFCLTFDFTVAGYLMISDTAWDEPGAFDPYFWRDRP
Ga0307434_10081166	3300031379	Salt Marsh	FGSSLLGLPVTEIPLGYGMFCLTFDFTVAGYLMMSDTVWDDPGKFDLYFWRDRP
Ga0318541_102493812	3300031545	Soil	SHCLSGSSLAGLSLTETPLGYGIFCSSYDFVVAYYLTISDSAWHEAGRFDLYFWRNRL
Ga0318541_103420253	3300031545	Soil	GVSITDIPLGYGIFCSAFDFVVAAYLMTSNAAWHKPGKFDPYFWRHIARADEVIE
Ga0318541_107088952	3300031545	Soil	LSGSSLAGLSMTETPLGYGIFCSSYDFVVAYYLVISDSAWHEAGKFDLYFWRNRL
Ga0318528_100105011	3300031561	Soil	HCLAGASLAGLSMTDIPLGYGIFCSSFDFTVAAYLMLSGSAWQKPGKLDLTFWRQGL
Ga0318528_101704091	3300031561	Soil	LSGSSVAGVSITDIPLGYGIFCSAFDFVVAAYLMISNTAWHNPGKFNPYFWRHIARADEVIE
Ga0310915_100104476	3300031573	Soil	SGVSLAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTAWHGPGRFDLYFWRTPTR
Ga0318561_101538401	3300031679	Soil	SSLAGLSLTETPLGYGIFCSSYDFVVAYYLTISDSAWHEAGRFDLYFWRNRL
Ga0318560_103848401	3300031682	Soil	DLSHCLSGSSLASVSITNIPLGYGIFCSAFDFVVAAYLMISNTAWHEPGRFDPYFWRHIVRADEVIE
Ga0318560_107967872	3300031682	Soil	AWDLSHCLSGSSLAGLSITDIPLGYGIFCSTYDFVVAGYLMISDTAWHAPGKFDLYFWRHSP
Ga0306917_114131142	3300031719	Soil	VMHGLWDLSHCLSGVSIAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTGWHGPGRFDLYFWRTPTR
Ga0318493_105064211	3300031723	Soil	LAGLSITEIPLGYGIFCSTYDFVVAGYLIVVAGYLMMSDSAWHEPGKLDLSFWREGL
Ga0318501_102193503	3300031736	Soil	AGASLAGLSMTDIPLGYGIFCSSFDFTVAAYLMLSGSAWQKPGKLDLTFWRQGL
Ga0318501_107479951	3300031736	Soil	LWDLSHCLSGSSLAGLSITDIPLGYGIFCSAFDFVVAAYLMISNTAWHEPGRFDPYFWRHIVRADEVIE
Ga0306918_104258261	3300031744	Soil	GSSLAGLSITEIPLGYGIFCSSYDFVVASYLMLSDTAWREPGKLDLYFWRRL
Ga0318492_104065242	3300031748	Soil	LWDLSHCLSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMISNAAWHKPGKFDPYFWRHIARADEVIE
Ga0318509_101667743	3300031768	Soil	LSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMTSNAAWHKPGKFDPYFWRHIARADEVIE
Ga0318547_102045261	3300031781	Soil	HCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSETAWYEPGKLDLYFWRHRA
Ga0318547_110535261	3300031781	Soil	GSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0318529_105016931	3300031792	Soil	GLSITEIPLGYGIFCSTYDFVVAGYLMMSDSAWHEPGKLDLSFWREGL
Ga0318529_106075161	3300031792	Soil	HCLSGASLAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTAWHEPGRFDLYFWRTPAR
Ga0318503_101947881	3300031794	Soil	SGTSLAGMSMTDTPLGYGIFCSSYDFVVASYLMMSDSAWNKAGSFDPYFWRRLG
Ga0318576_100265372	3300031796	Soil	MVSGIYPIACLAGLSITEIPLGYGIFCSSYDFVVASYLIISDSAWHEAGRFDPYFWRHL
Ga0318523_105410862	3300031798	Soil	VLHGLWDLAHCLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0318523_105875762	3300031798	Soil	LAGASLAGLSMTDIPLGYGIFCSSFDFTVAAYLMLSGSAWQKPGKLDLTFWRQGL
Ga0307473_107259471	3300031820	Hardwood Forest Soil	AHSLFGSSLFGLPTTEIPVGYGMLCLTFDLTVAGYLMMSDTAWDEPGKLDLYFWRSRP
Ga0306919_111091762	3300031879	Soil	DLSHCLSGSSLAGVSITDIPLGYGIFCSGFDFVVAAYLMISNTAWHEPGKFDPYFWRHIARANDVIE
Ga0318520_101282033	3300031897	Soil	LAGLSMTEIPLGYGIFCSTFDFVVAFYLMISDSAWHEAGRFDIYFWRLRP
Ga0306923_115404121	3300031910	Soil	SGSSLAGFSITDIPLGYGIFCSAFDFVVAAYLMVSNTAWHEPGKLDPYFWRHIARADDVI
Ga0306923_117674382	3300031910	Soil	IGYVMHGLWDLSHSLSGPSLAGLMTDIPLGYDLFCSTFDFVVAGYLMISDTAWHESGKLDLYFWRHSP
Ga0310884_106035471	3300031944	Soil	WDIAHGLFGSSLFGLPMTEIPLGYGMLCLTFDLTVAGYLMMSNTAWDEPGKFDLYFWRNR
Ga0310913_104019122	3300031945	Soil	WDLSHCLSGSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMISNTAWHKPGKFDPYFWRHIARADEVIE
Ga0306926_123243571	3300031954	Soil	GSSLAGLSMTEIPLGYGIFCSTFDFAVAYYLMISDSAWHEAGKFDLYFWRSRL
Ga0306922_100848621	3300032001	Soil	HFLSGSSLAGLSITDIPLGYGLFCSTYDFTVACYLMVSDTAWYEPGKLDLYFWRHRA
Ga0306922_101495323	3300032001	Soil	SGTSLAGLSIMEIPLGYGIFCSTYDFTVAGYLMISDTAWHEAGKFNPYFWRHSP
Ga0306922_118274402	3300032001	Soil	HCLSGSSLAGLSITEIPLGYGIFCATYDFVVAFYLMTSDTPWHEPGKLDLYFWRQRL
Ga0310911_100665341	3300032035	Soil	IWDLSHCLSGSSLAGLSITDIPLGYGIFCSSYDFIVASYLMISDTAWREPGSADLYFWRH
Ga0310911_108438771	3300032035	Soil	GSSLAGVSITDIPLGYGIFCSAFDFVVAAYLMTSNAAWHKPGKFDPYFWRHIARADEVIE
Ga0318518_101231021	3300032090	Soil	GLSMTETPLGYGIFCSSYDFVVAYYLVISDSAWHEAGKFDLYFWRSRL
Ga0318518_104587441	3300032090	Soil	LWDLSHCLFGSSLAGLSITEIPLGYGIFCSTYDFVVAGYLMMSDSAWHEPGKLDLSFWREGL
Ga0318518_106780902	3300032090	Soil	WDLSHCLSGSSLAGLSITDIPLGYGIFCSTYDFVVAGYLMISDTAWHAPGKFDLYFWRRS
Ga0318540_102488673	3300032094	Soil	SLAGVSITDIPLGYGIFCSAFDFVVAAYLMTSNAAWHKPGKFDPYFWRHIARADEVIE
Ga0306920_1005386591	3300032261	Soil	SLAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTGWHGPGRFDLYFWRTPTR
Ga0306920_1008266521	3300032261	Soil	LWDLSHCLSGSSLAGLSMTEIPLGYGIFCSTFDFVVAFYLMISDSAWHEAGRFDIYFWRHRP
Ga0306920_1008968453	3300032261	Soil	DLSHCLSGSSLAGVSITDIPLGYGVFCSAFDFVVAAYLMISNTAWHKPGKFDPYFWRHIVRTDEVIE
Ga0310914_111089871	3300033289	Soil	HCLFGSSLAGLSITEIPLGYGIFCSTYDFVIAGYLMMSDSAWHEPGKLDLSFWRQGL
Ga0318519_100093491	3300033290	Soil	SHCLSGVSLAGLSMTEIPLGYGIFCSTYDFTVACYLMISDTGWHGPGRFDLYFWRTPTR
Ga0326726_116743711	3300033433	Peat Soil	LWDLSHCLSGSSLAGLSITEIPLGYGIFCSTYDFTVACYLMVSGTAWHESGKFNLYFWRHLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060651

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences