NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F060685

Metagenome / Metatranscriptome Family F060685

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F060685
Family Type Metagenome / Metatranscriptome
Number of Sequences 132
Average Sequence Length 60 residues
Representative Sequence VTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVDES
Number of Associated Samples 116
Number of Associated Scaffolds 132

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.73 %
% of genes near scaffold ends (potentially truncated) 99.24 %
% of genes from short scaffolds (< 2000 bps) 93.94 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (73.485 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(16.667 % of family members)
Environment Ontology (ENVO) Unclassified
(33.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.030 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.82%    β-sheet: 0.00%    Coil/Unstructured: 43.18%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 132 Family Scaffolds
PF02594DUF167 72.73
PF05103DivIVA 14.39
PF02325YGGT 4.55
PF04472SepF 3.03
PF01168Ala_racemase_N 1.52

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 132 Family Scaffolds
COG1872Uncharacterized conserved protein YggU, UPF0235/DUF167 familyFunction unknown [S] 72.73
COG0762Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT familyPosttranslational modification, protein turnover, chaperones [O] 4.55
COG1799Cell division protein SepF/YlmF, interacts with FtsZCell cycle control, cell division, chromosome partitioning [D] 3.03

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.48 %
UnclassifiedrootN/A26.52 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459020|G1P06HT01C8EPUNot Available587Open in IMG/M
2228664021|ICCgaii200_c0833410All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria549Open in IMG/M
2228664021|ICCgaii200_c0946834All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300000956|JGI10216J12902_100597414All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300003997|Ga0055466_10061435All Organisms → cellular organisms → Bacteria954Open in IMG/M
3300003999|Ga0055469_10211386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria608Open in IMG/M
3300004145|Ga0055489_10312624Not Available505Open in IMG/M
3300004156|Ga0062589_102683860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria518Open in IMG/M
3300004463|Ga0063356_103399999Not Available685Open in IMG/M
3300004643|Ga0062591_101565091All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria662Open in IMG/M
3300005093|Ga0062594_100358835All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300005327|Ga0070658_10937581Not Available753Open in IMG/M
3300005329|Ga0070683_100429636All Organisms → cellular organisms → Bacteria1260Open in IMG/M
3300005338|Ga0068868_100144619All Organisms → cellular organisms → Bacteria1954Open in IMG/M
3300005338|Ga0068868_101586901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium614Open in IMG/M
3300005343|Ga0070687_100746992All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium688Open in IMG/M
3300005345|Ga0070692_10974903Not Available591Open in IMG/M
3300005353|Ga0070669_101196459All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria656Open in IMG/M
3300005356|Ga0070674_102011931All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300005365|Ga0070688_101477356All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium552Open in IMG/M
3300005366|Ga0070659_100174901All Organisms → cellular organisms → Bacteria1760Open in IMG/M
3300005366|Ga0070659_101288075Not Available648Open in IMG/M
3300005438|Ga0070701_10039782All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2387Open in IMG/M
3300005441|Ga0070700_100381316All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300005530|Ga0070679_100785167All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300005543|Ga0070672_101160840All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300005545|Ga0070695_100190867All Organisms → cellular organisms → Bacteria1458Open in IMG/M
3300005563|Ga0068855_101334308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria741Open in IMG/M
3300005577|Ga0068857_101444044Not Available670Open in IMG/M
3300005615|Ga0070702_100576524All Organisms → cellular organisms → Bacteria839Open in IMG/M
3300005718|Ga0068866_10445078All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300005844|Ga0068862_100878641All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300005888|Ga0075289_1029385All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300006048|Ga0075363_100055340All Organisms → cellular organisms → Bacteria2125Open in IMG/M
3300006051|Ga0075364_11180679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria519Open in IMG/M
3300006844|Ga0075428_100304727All Organisms → cellular organisms → Bacteria1713Open in IMG/M
3300006844|Ga0075428_100951652All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300006847|Ga0075431_100715955All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300006847|Ga0075431_101568669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria616Open in IMG/M
3300006871|Ga0075434_102482746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium520Open in IMG/M
3300006876|Ga0079217_11504399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria532Open in IMG/M
3300006931|Ga0097620_102549357Not Available563Open in IMG/M
3300009094|Ga0111539_12006036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria671Open in IMG/M
3300009100|Ga0075418_13161248Not Available501Open in IMG/M
3300009177|Ga0105248_10249848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1996Open in IMG/M
3300009553|Ga0105249_10669865All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1096Open in IMG/M
3300009868|Ga0130016_10300183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1124Open in IMG/M
3300010046|Ga0126384_12371380Not Available513Open in IMG/M
3300010373|Ga0134128_12560926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium562Open in IMG/M
3300010399|Ga0134127_10587660All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1140Open in IMG/M
3300010399|Ga0134127_12050894Not Available650Open in IMG/M
3300010400|Ga0134122_11243182All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300010403|Ga0134123_12237493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium609Open in IMG/M
3300011119|Ga0105246_10133387All Organisms → cellular organisms → Bacteria1858Open in IMG/M
3300011333|Ga0127502_11303820All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria602Open in IMG/M
3300012043|Ga0136631_10170710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium844Open in IMG/M
3300012093|Ga0136632_10003100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales6215Open in IMG/M
3300012186|Ga0136620_10229453Not Available817Open in IMG/M
3300012508|Ga0157315_1024752Not Available662Open in IMG/M
3300012883|Ga0157281_1073058Not Available574Open in IMG/M
3300012902|Ga0157291_10036879All Organisms → cellular organisms → Bacteria1087Open in IMG/M
3300012908|Ga0157286_10078121All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300012909|Ga0157290_10341815Not Available566Open in IMG/M
3300012911|Ga0157301_10151402All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium739Open in IMG/M
3300012912|Ga0157306_10022644All Organisms → cellular organisms → Bacteria1365Open in IMG/M
3300012914|Ga0157297_10003787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2967Open in IMG/M
3300012915|Ga0157302_10312723Not Available615Open in IMG/M
3300012915|Ga0157302_10443419Not Available547Open in IMG/M
3300012916|Ga0157310_10437415Not Available553Open in IMG/M
3300012943|Ga0164241_10208298All Organisms → cellular organisms → Bacteria1398Open in IMG/M
3300012943|Ga0164241_10460673All Organisms → cellular organisms → Bacteria914Open in IMG/M
3300012943|Ga0164241_11394610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium516Open in IMG/M
3300012957|Ga0164303_10627826All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium712Open in IMG/M
3300012958|Ga0164299_10490749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium814Open in IMG/M
3300012989|Ga0164305_10350068All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300012989|Ga0164305_11437631Not Available609Open in IMG/M
3300013102|Ga0157371_10516802All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300013102|Ga0157371_11524294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria522Open in IMG/M
3300014270|Ga0075325_1040008All Organisms → cellular organisms → Bacteria962Open in IMG/M
3300014272|Ga0075327_1021345All Organisms → cellular organisms → Bacteria1942Open in IMG/M
3300014745|Ga0157377_11419511Not Available548Open in IMG/M
3300017965|Ga0190266_10151378Not Available1043Open in IMG/M
3300017965|Ga0190266_11111380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria540Open in IMG/M
3300018469|Ga0190270_10121826All Organisms → cellular organisms → Bacteria2053Open in IMG/M
3300018481|Ga0190271_10272967All Organisms → cellular organisms → Bacteria1737Open in IMG/M
3300018481|Ga0190271_11581015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria771Open in IMG/M
3300020070|Ga0206356_11701912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria530Open in IMG/M
3300020082|Ga0206353_10588817Not Available557Open in IMG/M
3300022915|Ga0247790_10130906Not Available636Open in IMG/M
3300023073|Ga0247744_1007372All Organisms → cellular organisms → Bacteria1389Open in IMG/M
3300023097|Ga0247757_10147564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium756Open in IMG/M
3300023263|Ga0247800_1108996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium568Open in IMG/M
3300023269|Ga0247773_1025663All Organisms → cellular organisms → Bacteria1994Open in IMG/M
3300025321|Ga0207656_10603883All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium560Open in IMG/M
3300025901|Ga0207688_10069266All Organisms → cellular organisms → Bacteria1999Open in IMG/M
3300025908|Ga0207643_10932612Not Available562Open in IMG/M
3300025917|Ga0207660_10737134Not Available804Open in IMG/M
3300025920|Ga0207649_11669593Not Available504Open in IMG/M
3300025921|Ga0207652_10588665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria998Open in IMG/M
3300025923|Ga0207681_11135954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria656Open in IMG/M
3300025925|Ga0207650_10635105All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300025926|Ga0207659_10685176All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300025931|Ga0207644_11705383All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300025936|Ga0207670_10983907Not Available709Open in IMG/M
3300025938|Ga0207704_11169010Not Available655Open in IMG/M
3300025941|Ga0207711_10167742All Organisms → cellular organisms → Bacteria1991Open in IMG/M
3300025942|Ga0207689_10712968All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300025942|Ga0207689_11462750Not Available571Open in IMG/M
3300025944|Ga0207661_11265180Not Available678Open in IMG/M
3300025961|Ga0207712_10317425All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1284Open in IMG/M
3300026075|Ga0207708_10525995All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria994Open in IMG/M
3300026075|Ga0207708_10526730All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300026078|Ga0207702_10692054All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1004Open in IMG/M
3300026089|Ga0207648_11280302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria689Open in IMG/M
3300027401|Ga0208637_1024003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium679Open in IMG/M
3300027675|Ga0209077_1113988All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria752Open in IMG/M
3300027695|Ga0209966_1143316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium555Open in IMG/M
3300028380|Ga0268265_11309070All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium725Open in IMG/M
3300028381|Ga0268264_10633972All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300028587|Ga0247828_10455082All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium750Open in IMG/M
3300028592|Ga0247822_10044503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia3084Open in IMG/M
3300028812|Ga0247825_10049340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia2795Open in IMG/M
3300030336|Ga0247826_10005828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales4518Open in IMG/M
3300031547|Ga0310887_10319180All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300031847|Ga0310907_10729053Not Available550Open in IMG/M
3300031908|Ga0310900_11445015Not Available579Open in IMG/M
3300032003|Ga0310897_10380804Not Available663Open in IMG/M
3300032012|Ga0310902_10845510All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium627Open in IMG/M
3300032013|Ga0310906_11420267Not Available510Open in IMG/M
3300032075|Ga0310890_10359326All Organisms → cellular organisms → Bacteria1068Open in IMG/M
3300033550|Ga0247829_10629696All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300033550|Ga0247829_10945429Not Available717Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil9.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere6.06%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.30%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.30%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.79%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.03%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.03%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.03%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.03%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.03%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand2.27%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.27%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.27%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.27%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.52%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.52%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.52%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.52%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.52%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.52%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.76%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.76%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.76%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.76%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.76%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.76%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.76%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.76%
WastewaterEngineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater0.76%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459020Litter degradation NP2EngineeredOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003997Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1EnvironmentalOpen in IMG/M
3300003999Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2EnvironmentalOpen in IMG/M
3300004145Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005888Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103EnvironmentalOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006051Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009868Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plantEngineeredOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011333Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012043Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)EnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012186Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)EnvironmentalOpen in IMG/M
3300012508Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510Host-AssociatedOpen in IMG/M
3300012883Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1EnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012916Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300014270Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1EnvironmentalOpen in IMG/M
3300014272Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1EnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020082Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300023097Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L126-311R-4EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300023269Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027401Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)EnvironmentalOpen in IMG/M
3300027675Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2NP_018669002170459020Switchgrass, Maize And Mischanthus LitterVSVDLDTRRAELLALRERVLGAAHDIVEGDVEDGELSNAAGDQHIADHASEMVDREVDVSLEE
ICCgaii200_083341032228664021SoilVSVDLDTRRDELLALRERVLGAAHDIVEGDVEDGELSSAAGDQHI
ICCgaii200_094683412228664021SoilVTIELDVRRRELLDLRGRVLGAAKDIVKGDTDDGELSSAAGDQHLADHASDMLD
JGI10216J12902_10059741413300000956SoilMSVDLDRRRTELLDLRTRVLGAATDILSGDVDDSELSSAAGDQHLGDHASEMLDRE
Ga0055466_1006143533300003997Natural And Restored WetlandsVSVDPDTRRSELLALRARVLGAAQDIVEGDVEDGELSSAAGDQHIADHASDMVDREVDVSLEENAEQIVYEIDRALARI
Ga0055469_1021138613300003999Natural And Restored WetlandsMSVDFDRRRSELLELRSQVLGAAHDLVTDDDDSSELSSAAGDQHLGDHASE
Ga0055489_1031262413300004145Natural And Restored WetlandsVTVDLDRRRSELLELRSNVLGAAHDLVADDDDASELSSAAGDQHLGDHASEMFDHELDESLEE
Ga0062589_10268386013300004156SoilVSVDLDSRRDELLALRERVLGAAHDIVEGDVEDGELSSAAGDQHIADHASEMVDRELDVSLEENAVQIVYE
Ga0063356_10339999933300004463Arabidopsis Thaliana RhizosphereVSVDLDRRRTELLDLRTRVLVAAQDIVSGDEDDGELSSAAGDQHLADHAS
Ga0062591_10156509113300004643SoilMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVD
Ga0062594_10035883533300005093SoilMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAEVIV
Ga0070658_1093758123300005327Corn RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVDDGELSNAGGDQHLADHATEMVDREVDQSLEENAEQIS
Ga0070683_10042963633300005329Corn RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAEVIVYEIDAA
Ga0068868_10014461953300005338Miscanthus RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDM
Ga0068868_10158690123300005338Miscanthus RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDM
Ga0070687_10074699233300005343Switchgrass RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVD
Ga0070692_1097490323300005345Corn, Switchgrass And Miscanthus RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAE
Ga0070669_10119645933300005353Switchgrass RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHL
Ga0070674_10201193113300005356Miscanthus RhizosphereMSVDLDQRRAELLDLRTQVLAAAHDIVLDDDDDSELSSAAGDQHLADHASDMFDREVDESLEENAEQLVHEID
Ga0070688_10147735623300005365Switchgrass RhizosphereVTIELEARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDM
Ga0070659_10017490153300005366Corn RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQ
Ga0070659_10128807513300005366Corn RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADH
Ga0070701_1003978213300005438Corn, Switchgrass And Miscanthus RhizosphereVTIELDVRRRELLDLRGKVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVD
Ga0070700_10038131613300005441Corn, Switchgrass And Miscanthus RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASD
Ga0070679_10078516713300005530Corn RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAA
Ga0070672_10116084033300005543Miscanthus RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAEELVRDIDRA
Ga0070695_10019086743300005545Corn, Switchgrass And Miscanthus RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAEELVRDIDRALEK
Ga0068855_10133430813300005563Corn RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHA
Ga0068857_10144404423300005577Corn RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHATEMVDREVDQSLEENAEQI
Ga0070702_10057652433300005615Corn, Switchgrass And Miscanthus RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLA
Ga0068866_1044507833300005718Miscanthus RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDE
Ga0068862_10087864113300005844Switchgrass RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAG
Ga0075289_102938523300005888Rice Paddy SoilMSVDLDERRGELLGLRARVLGAAHDIVEGDVDDGELSNAGGDQHLADHATEMVDREVDESLEENAEQIVYEIDRA
Ga0075363_10005534013300006048Populus EndosphereVSVDLDTRRDELLALRERVLGAAHDIVEGDVEDGELSSAAGDQHLADHASEMVDREVDVSLEENAEQIVYEID
Ga0075364_1118067913300006051Populus EndosphereVSVDLDTRRDELLSLRERVLGAAHDIVEGDVEDGELSSAAGDQHIADHASEMVDRELDVSLEE
Ga0075428_10030472753300006844Populus RhizosphereVSVDLDTRRGELLALRERVLGAAHDIVKGDVEDGELSNAAGDQHIAD
Ga0075428_10095165233300006844Populus RhizosphereMSVDLDQRRAELLDLRTQVLAAAHDIVLDDDDDSELSSAAGDQHLADHASDMFDREVDESLEENAE
Ga0075431_10071595533300006847Populus RhizosphereVSVDLDTRRGELLALRERVLGAAHDIVEGDVEDGELSNAAGDQHLADHASEMVDRE
Ga0075431_10156866913300006847Populus RhizosphereMTEVDLDSRRTELLAMRDHVLRAAHDIVEDDADESELSSAAGDQHLADHATDMLDRELDDSLEEN
Ga0075434_10248274613300006871Populus RhizosphereVTIQLDVRRRELLDLREKVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVD
Ga0079217_1150439913300006876Agricultural SoilMSVDLDGRRTELLDLRMRVLGAANDIVSGDEDDSELSSAAGDQHLADHASEMLDREVDESLEDNAEQ
Ga0097620_10254935713300006931Switchgrass RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVDDGELSNAGGDQHLADHATEMVDREV
Ga0111539_1200603613300009094Populus RhizosphereMSVDLDQRRTELLDLRTRVLGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDESLEENA
Ga0075418_1316124813300009100Populus RhizosphereVSVELEDRRAQLLGLRARVLGAAQDIVEGDVDEGELSNAGGDQHLADHATEMVDREVDESLEENAEQIVYEI
Ga0105248_1024984853300009177Switchgrass RhizosphereVTIELDARRNELLDLRERVLGAAKDIGEGDTDDGELSSAAGDQHLADHASDMLDREVDES
Ga0105249_1066986543300009553Switchgrass RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDML
Ga0130016_1030018343300009868WastewaterMTIDLETRRLELLALRERILGAAESIVAGDEESGEINSAAGDQHLA
Ga0126384_1237138023300010046Tropical Forest SoilMSVDLDDRRGQLVALRARVLGAAHDIVEGDVDDGELSNAGGDQHLADHAT
Ga0134128_1256092623300010373Terrestrial SoilVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDESLEDNAEDIVREIDAALE
Ga0134127_1058766013300010399Terrestrial SoilVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVDES
Ga0134127_1205089423300010399Terrestrial SoilMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVDDGELSNAGGDQHLADHATEMVDREVDQSLEENAEQIGYEIDRALAKI
Ga0134122_1124318233300010400Terrestrial SoilVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSSA
Ga0134123_1223749313300010403Terrestrial SoilVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDES
Ga0105246_1013338753300011119Miscanthus RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDML
Ga0127502_1130382013300011333SoilMSVDLDQRRTALLDLRTRVLGAANDIVSGDADDSELSSAAGDQHLGDHATEMLDREVDESLEDNAEQIVHEIDVALGRIE
Ga0136631_1017071013300012043Polar Desert SandVTVDLEARRAELVGLRDRIERAAHDVVEGDQGEGELASAAGDQHLADHAAELVDREIDSSLEENAEQIAHE
Ga0136632_1000310013300012093Polar Desert SandVTVDLEARRAELLVLRDRIERAAHDVVEGDESAGELSSAAGDQHLADHAAELVDREVDSSLEE
Ga0136620_1022945323300012186Polar Desert SandVTVDLEARRAELLVLRDRIERAAHDVVEGDESAGELSSAAGDQHLADHAAELVDREVDSSLEENAEQIA
Ga0157315_102475213300012508Arabidopsis RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMV
Ga0157281_107305813300012883SoilVTGTYDDRRAELLAMRGRILGAAHDIVEDDTDDSELSSAAGDQHLADHASEMF
Ga0157291_1003687943300012902SoilVTIELDVRRRELLDLRGRVLGAAKDIVEGDTDDGELSSA
Ga0157286_1007812133300012908SoilVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQH
Ga0157290_1034181523300012909SoilVSVDLDTRRGELLALRERVLGAAHDIVEGDVEDGELSNAAGDQHIADH
Ga0157301_1015140213300012911SoilVTIELDTRRRELLDLRERFLRAAQDIVDDDTEDGELSSAAGDQHLADHASEMLDREVD
Ga0157306_1002264443300012912SoilVSVDLDTRRDELLALRERVLGAAHDIVECDVEDGELSSAAGDQHIADHASEMVDREL
Ga0157297_1000378773300012914SoilVTGTYDDRRAELLAMRGRILGAAHDIVEDDTDDSELSSAAGDQHLADHASEMFDREVDESLEENAEAIVQE
Ga0157302_1031272323300012915SoilVSVDLDERRGELLGLRARVLGAAHDIVEGDVDDGELSNAAGDQHLADHATEMVDREVD
Ga0157302_1044341923300012915SoilVSVDLDTRRAELLALRERVLGAAHDIVEGDVEDGELSNAAGDQHIADHASEMVDRE
Ga0157310_1043741523300012916SoilVSVDLDTRRGELLALRERVLGAAHDIVEGDVEDGELSSAAGDQHIA
Ga0164241_1020829843300012943SoilMSVDLDDRRGELLGLRARVLGAAHDIVEGDVDDGELSNAGGDQHLADHATEMIDREVDES
Ga0164241_1046067323300012943SoilMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVADGELSNAGGDQHLADHATEMVDREVDQSLEENAEQISY
Ga0164241_1139461023300012943SoilVTIELDTRRRELLDLRERYLRAAQDIVDDDTEDGELSSAAGDQHLA
Ga0164303_1062782623300012957SoilMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVDDGELSNAGGDQHLADHATEMVDREVDQSLE*
Ga0164299_1049074913300012958SoilVTIKFDTRRSELVELRERVLRAAQDIVDDDTEDGELSSAAGDQHLADHASDMLDREVDESLEENAELIV
Ga0164305_1035006813300012989SoilVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGEL
Ga0164305_1143763123300012989SoilVSVELEDRRTQLLGLRARVLGAAQDIVEGDVDEGELSNAGGDQHLADHATEMVDREVDES
Ga0157371_1051680233300013102Corn RhizosphereVTGTYDDRRAELLAMRGRILGAAHDIVEDDTDDSELSSAAGDQHLADHASEMFDREV
Ga0157371_1152429423300013102Corn RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAEELVR
Ga0075325_104000833300014270Natural And Restored WetlandsMSVDLDRRRAQLLELRSQVLGAAQDLVTDDDDPSELSSAAGDQHLG
Ga0075327_102134553300014272Natural And Restored WetlandsVSVDFDRRRSELLELRSQVLGAAHDLVTDDDDSSELSSAAGDQHLGDHASEMHDRELDE
Ga0157377_1141951123300014745Miscanthus RhizosphereVTGTYDDRRAELLAMRGRILGAAHDIVQDDTDDSELSSAAGDQHLADHASEMFDREVDESLEENAEAIVQEIDAALGRIDD
Ga0190266_1015137813300017965SoilMSVDLDRRRTELLDLRTRVLGAANDIVSGDDDDSELSSASGDQHLADHASEMLDREVDESLEDNAEQIVHEIDVALGR
Ga0190266_1111138023300017965SoilMSVDLDRRRTELLDLRTRVLGAANDIVSGDDDDSELSSASGDQHLGDHASEMLDREVDESLEDNAEQIVH
Ga0190270_1012182613300018469SoilMSVDLDRRRTELLELRTRVLGAANDLVIGDDDDSELSSASGDQHLGDHASEMLDREVDESLEDNAEQ
Ga0190271_1027296713300018481SoilVSIDLDQRRAELLDLRSKVLGAAHDIVLDDDDDSELSSAAGDQHLADHASEMLDREVDESLEDNAEQLVHEIDAALGRID
Ga0190271_1158101533300018481SoilMSVDLDQRRTALLDLRTRVLGAANDIVSGDADDSELSSAAGDQHLGDHATEMLDREVDESLEDNAEQIVHEIDVALGRIEDG
Ga0206356_1170191223300020070Corn, Switchgrass And Miscanthus RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAEELVRDIDRALEKIA
Ga0206353_1058881713300020082Corn, Switchgrass And Miscanthus RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVGGDVDDGELSNAGGDQHLAVHATE
Ga0247790_1013090633300022915SoilMSVDLDQRRAELLDLRTQVLAAAHDIVLDDDDDSELSSAAGDQHLADHASDMFDREVDESLEENAEQLVH
Ga0247744_100737243300023073SoilVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDESLEDNAE
Ga0247757_1014756413300023097Plant LitterVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLD
Ga0247800_110899623300023263SoilVTIELDTRRRELLDLRERFLRAAQDIVDDDTEDGELSSAAGDQHLADHASEMLDREVDGSLE
Ga0247773_102566353300023269Plant LitterVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDESLEDNAEDIVREIDA
Ga0207656_1060388323300025321Corn RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDESLEDNAEDIVREID
Ga0207688_1006926653300025901Corn, Switchgrass And Miscanthus RhizosphereVTIELEARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVDESLEDNAEEIVREIDA
Ga0207643_1093261213300025908Miscanthus RhizosphereVSVDLDERRGELLGLRARVLGAAHDIVEGDVDDGELSNAAGDQHLADHATEMVDREVDESLEENAEQIVYEIDRAVA
Ga0207660_1073713413300025917Corn RhizosphereVSVDLDERRGELLGLRARVLGAAHDIVEGDVDDGELSNAAGDQHLADHATEMVDREVDESLEENAEQIVYEIDRALAKIDDGT
Ga0207649_1166959323300025920Corn RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAEVI
Ga0207652_1058866533300025921Corn RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHA
Ga0207681_1113595433300025923Switchgrass RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEE
Ga0207650_1063510513300025925Switchgrass RhizosphereVSVDLDTRRGELLALRERVLGAAHDIVEGDVEDGELSSAAGDQHIADHASEMVDREVDVSLEENA
Ga0207659_1068517613300025926Miscanthus RhizosphereVTIELEARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDREVDESLEDNAEE
Ga0207644_1170538313300025931Switchgrass RhizosphereVTIELEARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLDR
Ga0207670_1098390733300025936Switchgrass RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASD
Ga0207704_1116901033300025938Miscanthus RhizosphereMSVDLDQRRTELLDLRTRVLGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDESLEEN
Ga0207711_1016774253300025941Switchgrass RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREV
Ga0207689_1071296813300025942Miscanthus RhizosphereVTIELDVRRRELLDLRGRVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLD
Ga0207689_1146275013300025942Miscanthus RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAEV
Ga0207661_1126518013300025944Corn RhizosphereMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVDESLDENAEVIVYEIDAAL
Ga0207712_1031742543300025961Switchgrass RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDE
Ga0207708_1052599513300026075Corn, Switchgrass And Miscanthus RhizosphereVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHL
Ga0207708_1052673033300026075Corn, Switchgrass And Miscanthus RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHL
Ga0207702_1069205433300026078Corn RhizosphereMTTSLDARRAELLELRESILRAAHYIVEDDTDEGELSNAAGDQHLADHASDMLDRE
Ga0207648_1128030233300026089Miscanthus RhizosphereMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAE
Ga0208637_102400333300027401SoilVTIELDARRSELLDLRGRVLGAAKDIVEGDTDDGELSSAAGDQHLAD
Ga0209077_111398833300027675Freshwater SedimentMSIDVDGRRGELLAMRDRVLRAAQDIAEDDTEDGELSNAAGDQHLADHASEMFD
Ga0209966_114331623300027695Arabidopsis Thaliana RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVDDDTEDGELSSAAGDQHLADHASEMLDREVDGSLEDNAEEIGREID
Ga0268265_1130907013300028380Switchgrass RhizosphereVTIELDTRRRELLDLRERFLRAAQDIVEGDTDDGELSNAAGDQHLADHASDMLDREVDESLEDN
Ga0268264_1063397233300028381Switchgrass RhizosphereVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLA
Ga0247828_1045508233300028587SoilVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELS
Ga0247822_1004450373300028592SoilMSVDLDDRRAQLLDLRSRVLGAAHDIVEGDVDDGELSSAAGDQHLADHASEMVDREVDESLEENAEELVRDIDRALA
Ga0247825_1004934013300028812SoilMSVDLDQRRTELLDLRTRALGAAQDIVSGDEDDGELSSAAGDQHLADHASELLD
Ga0247826_1000582893300030336SoilVTIELDARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHAS
Ga0310887_1031918013300031547SoilVTIELEARRSELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQH
Ga0310907_1072905313300031847SoilVSVDLDRRRTELLDLRTRVLVAAQDIVSGDEDDGELSSAAGDQHLA
Ga0310900_1144501523300031908SoilMTTSLDARRAELLELRERILRAAHDIVEDDTDEGELSNAAGDQHLADHASDMLDREVD
Ga0310897_1038080433300032003SoilMSVDLDQRRTELLDLRTRVLGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDESLEENAEQLVHEIDVAVARI
Ga0310902_1084551013300032012SoilVTIELDARRNELLDLRERVLGAAKDIVEGDTDDGELSSAAGDQHLADHASDMLD
Ga0310906_1142026713300032013SoilMSVDLDQRRTELLDLRTRALGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDES
Ga0310890_1035932633300032075SoilMSVDLDQRRTELLDLRTRALGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDESLEENA
Ga0247829_1062969633300033550SoilMSVDLDRRRTELLDLRTRVLVAANDIVSGDEDDSELSSAAGDQHLADHASEMLDREVDESLEDNAEQIVHETQR
Ga0247829_1094542933300033550SoilMSVDLDQRRTELLDLRTRALGAAQDIVSGDEDDGELSSAAGDQHLADHASEMLDREVDESLEENAEQLVHEIDVA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.