Metagenome / Metatranscriptome Family F060693

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060693
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	61 residues
Representative Sequence	MPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Number of Associated Samples	101
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.54 %
% of genes near scaffold ends (potentially truncated)	31.82 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (84.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.697 % of family members)
Environment Ontology (ENVO)	Unclassified (32.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.030 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.33% β-sheet: 0.00% Coil/Unstructured: 91.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF13714	PEP_mutase	22.73
PF02954	HTH_8	21.97
PF12697	Abhydrolase_6	6.82
PF00561	Abhydrolase_1	4.55
PF00196	GerE	3.79
PF01370	Epimerase	3.03
PF08281	Sigma70_r4_2	2.27
PF04542	Sigma70_r2	2.27
PF03544	TonB_C	1.52
PF13460	NAD_binding_10	1.52
PF00158	Sigma54_activat	1.52
PF07883	Cupin_2	1.52
PF00873	ACR_tran	0.76
PF05368	NmrA	0.76
PF00034	Cytochrom_C	0.76
PF01966	HD	0.76
PF01435	Peptidase_M48	0.76
PF01595	CNNM	0.76
PF12464	Mac	0.76
PF10137	TIR-like	0.76
PF00797	Acetyltransf_2	0.76
PF02687	FtsX	0.76
PF04095	NAPRTase	0.76
PF16694	Cytochrome_P460	0.76
PF09360	zf-CDGSH	0.76
PF13185	GAF_2	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.27
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.27
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.27
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.27
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.52
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.76
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.09 %
Unclassified	root	N/A	15.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.09 %
Unclassified	root	N/A	15.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.09 %
Unclassified	root	N/A	15.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.18 %
Unclassified	root	N/A	15.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.27 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.36 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.27 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.27 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.52 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.76 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	3.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.27 %
Promicromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae	1.52 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.27 %
Promicromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora	1.52 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	3.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.27 %
Promicromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora	1.52 %
Micromonospora acroterricola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora acroterricola	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.91 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	9.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.79 %
Rhizobium etli 8C-3	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3	3.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.27 %
Promicromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora	1.52 %
Micromonospora acroterricola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora acroterricola	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459002\|FZY7DQ102GQ6FE	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	508	Open in IMG/M
3300000891\|JGI10214J12806_12156839	All Organisms → cellular organisms → Bacteria → Proteobacteria	2056	Open in IMG/M
3300000956\|JGI10216J12902_101620392	All Organisms → cellular organisms → Bacteria	3000	Open in IMG/M
3300000956\|JGI10216J12902_102417878	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300000956\|JGI10216J12902_103818789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	756	Open in IMG/M
3300000956\|JGI10216J12902_104819526	Not Available	1278	Open in IMG/M
3300000956\|JGI10216J12902_108588887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1585	Open in IMG/M
3300000956\|JGI10216J12902_114190326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2030	Open in IMG/M
3300000956\|JGI10216J12902_116187966	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300004114\|Ga0062593_100008380	All Organisms → cellular organisms → Bacteria → Proteobacteria	4620	Open in IMG/M
3300004157\|Ga0062590_100527938	All Organisms → cellular organisms → Bacteria → Proteobacteria	1015	Open in IMG/M
3300004463\|Ga0063356_100012154	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7800	Open in IMG/M
3300004463\|Ga0063356_105975909	Not Available	522	Open in IMG/M
3300005183\|Ga0068993_10028766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1484	Open in IMG/M
3300005290\|Ga0065712_10474212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	668	Open in IMG/M
3300005328\|Ga0070676_10856327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	674	Open in IMG/M
3300005331\|Ga0070670_101074974	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005332\|Ga0066388_105175675	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	662	Open in IMG/M
3300005332\|Ga0066388_108561223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	509	Open in IMG/M
3300005333\|Ga0070677_10166687	Not Available	1038	Open in IMG/M
3300005334\|Ga0068869_100300966	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300005338\|Ga0068868_101610452	Not Available	610	Open in IMG/M
3300005347\|Ga0070668_101331283	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300005353\|Ga0070669_100106269	All Organisms → cellular organisms → Bacteria → Proteobacteria	2124	Open in IMG/M
3300005365\|Ga0070688_100515636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	904	Open in IMG/M
3300005366\|Ga0070659_101110522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	697	Open in IMG/M
3300005440\|Ga0070705_100372111	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1049	Open in IMG/M
3300005441\|Ga0070700_100546174	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300005455\|Ga0070663_100968612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	738	Open in IMG/M
3300005456\|Ga0070678_101481571	Not Available	635	Open in IMG/M
3300005615\|Ga0070702_100823688	Not Available	720	Open in IMG/M
3300005713\|Ga0066905_100095539	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300005764\|Ga0066903_106431250	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300005840\|Ga0068870_10561451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770	Open in IMG/M
3300005981\|Ga0081538_10221452	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006042\|Ga0075368_10558460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3	515	Open in IMG/M
3300006844\|Ga0075428_100011520	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9836	Open in IMG/M
3300006871\|Ga0075434_100055396	All Organisms → cellular organisms → Bacteria → Proteobacteria	3940	Open in IMG/M
3300006894\|Ga0079215_10004947	All Organisms → cellular organisms → Bacteria	3722	Open in IMG/M
3300006903\|Ga0075426_10109118	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300007004\|Ga0079218_13492560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300007004\|Ga0079218_13591128	Not Available	527	Open in IMG/M
3300009053\|Ga0105095_10095044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3	1615	Open in IMG/M
3300009100\|Ga0075418_12025230	Not Available	627	Open in IMG/M
3300009147\|Ga0114129_10254428	All Organisms → cellular organisms → Bacteria	2356	Open in IMG/M
3300009148\|Ga0105243_11976711	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	617	Open in IMG/M
3300009176\|Ga0105242_12607779	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	554	Open in IMG/M
3300009354\|Ga0115925_10904307	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300010362\|Ga0126377_10265403	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300010362\|Ga0126377_11940806	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010376\|Ga0126381_102625855	Not Available	721	Open in IMG/M
3300010400\|Ga0134122_10531844	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300010403\|Ga0134123_10450532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300011000\|Ga0138513_100007377	Not Available	1297	Open in IMG/M
3300011106\|Ga0151489_1532107	Not Available	591	Open in IMG/M
3300011429\|Ga0137455_1017215	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300012022\|Ga0120191_10022992	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300012474\|Ga0157356_1026297	Not Available	510	Open in IMG/M
3300012517\|Ga0157354_1039115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3	639	Open in IMG/M
3300012944\|Ga0137410_10313498	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300014326\|Ga0157380_12078913	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300014326\|Ga0157380_12419417	Not Available	590	Open in IMG/M
3300015245\|Ga0137409_10164369	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300015371\|Ga0132258_10196292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4892	Open in IMG/M
3300015372\|Ga0132256_100230099	All Organisms → cellular organisms → Bacteria → Proteobacteria	1914	Open in IMG/M
3300015372\|Ga0132256_101231944	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300015374\|Ga0132255_101502169	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300017792\|Ga0163161_10125055	All Organisms → cellular organisms → Bacteria → Proteobacteria	1935	Open in IMG/M
3300017965\|Ga0190266_10085026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1251	Open in IMG/M
3300017965\|Ga0190266_10775312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	611	Open in IMG/M
3300018073\|Ga0184624_10101136	All Organisms → cellular organisms → Bacteria → Proteobacteria	1233	Open in IMG/M
3300018422\|Ga0190265_10445853	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300018432\|Ga0190275_10548617	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300018432\|Ga0190275_13625034	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300018469\|Ga0190270_10902734	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300018469\|Ga0190270_11364602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora	754	Open in IMG/M
3300018469\|Ga0190270_12834769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300018476\|Ga0190274_10031161	All Organisms → cellular organisms → Bacteria → Proteobacteria	3643	Open in IMG/M
3300018476\|Ga0190274_10791615	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300018476\|Ga0190274_11024515	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300018476\|Ga0190274_12605279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora acroterricola	603	Open in IMG/M
3300018481\|Ga0190271_10041411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3833	Open in IMG/M
3300018481\|Ga0190271_10964648	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300018481\|Ga0190271_11474630	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	798	Open in IMG/M
3300018481\|Ga0190271_12011972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora	687	Open in IMG/M
3300019356\|Ga0173481_10408081	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300022756\|Ga0222622_10545198	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300025893\|Ga0207682_10530004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300025908\|Ga0207643_10029665	All Organisms → cellular organisms → Bacteria	3043	Open in IMG/M
3300025908\|Ga0207643_10265730	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300025923\|Ga0207681_10230851	Not Available	1436	Open in IMG/M
3300025925\|Ga0207650_10440028	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300025925\|Ga0207650_11092532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	679	Open in IMG/M
3300025926\|Ga0207659_10863361	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300025941\|Ga0207711_11140595	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300025960\|Ga0207651_11030621	Not Available	736	Open in IMG/M
3300025972\|Ga0207668_11084728	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300026075\|Ga0207708_10554266	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300026075\|Ga0207708_10971155	Not Available	737	Open in IMG/M
3300026121\|Ga0207683_11341833	Not Available	662	Open in IMG/M
3300027873\|Ga0209814_10017598	All Organisms → cellular organisms → Bacteria	2875	Open in IMG/M
3300027886\|Ga0209486_11105235	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300027909\|Ga0209382_10014964	All Organisms → cellular organisms → Bacteria	9517	Open in IMG/M
3300028597\|Ga0247820_11281265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300028784\|Ga0307282_10625433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300028802\|Ga0307503_10127324	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300028809\|Ga0247824_10068616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3	1840	Open in IMG/M
3300028812\|Ga0247825_10113208	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300028812\|Ga0247825_10567827	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300028812\|Ga0247825_10988270	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031114\|Ga0308187_10133585	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300031226\|Ga0307497_10740098	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	511	Open in IMG/M
3300031228\|Ga0299914_10468467	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300031538\|Ga0310888_11017977	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031547\|Ga0310887_10045902	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300031858\|Ga0310892_11406215	Not Available	501	Open in IMG/M
3300031908\|Ga0310900_10614028	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300031908\|Ga0310900_10783519	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300031908\|Ga0310900_11523810	Not Available	564	Open in IMG/M
3300031943\|Ga0310885_10026760	All Organisms → cellular organisms → Bacteria	2214	Open in IMG/M
3300031944\|Ga0310884_10214358	All Organisms → cellular organisms → Bacteria → Acidobacteria	1035	Open in IMG/M
3300032013\|Ga0310906_10613299	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300032075\|Ga0310890_11595406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	539	Open in IMG/M
3300032122\|Ga0310895_10137914	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300032144\|Ga0315910_10172447	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300032157\|Ga0315912_10027007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4652	Open in IMG/M
3300032157\|Ga0315912_10039572	All Organisms → cellular organisms → Bacteria	3760	Open in IMG/M
3300032180\|Ga0307471_100470719	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300032211\|Ga0310896_10471913	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300034150\|Ga0364933_009517	All Organisms → cellular organisms → Bacteria	2234	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.67%
Host-Associated	Host-Associated	32.58%
Engineered	Engineered	0.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.88%
Plants	Host-Associated → Plants	32.58%
Aquatic	Environmental → Aquatic	3.79%
Built Environment	Engineered → Built Environment	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.85%
Sediment	Environmental → Aquatic → Sediment	2.27%
Roots	Host-Associated → Plants → Roots	1.52%
Freshwater	Environmental → Aquatic → Freshwater	0.76%
Marine	Environmental → Aquatic → Marine	0.76%
Floodplain	Environmental → Terrestrial → Floodplain	0.76%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.76%
Unclassified	Engineered → Built Environment → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.09%
Loam	Environmental → Terrestrial → Soil → Loam	7.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.27%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.76%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.76%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.76%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.03%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.06%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.76%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.76%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.76%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.06%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.06%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.30%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.52%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.76%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.76%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.76%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.76%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Swimming Pool Sandfilter Backwash	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash	0.76%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009354	Microbial communities from sand-filter backwash in Singapore swimming pools - PR-2	Engineered	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012474	Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610	Environmental	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E1_09480440	2170459002	Grass Soil	MRSDERGQTRWALDEPGPQTESSSERGFRTRGPVDDEWGRSESLDPDDVGDIADE
JGI10214J12806_121568392	3300000891	Soil	MPEFGWGVDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG*
JGI10216J12902_1016203923	3300000956	Soil	MSAVPWEDFGWGGLDDPGPQTESAIERGFRTAGPIDDQWGRSESLDPDNVGDIADEGPGHRG*
JGI10216J12902_1024178782	3300000956	Soil	MGSAAARGPGRGPWHFGWGGAGEPGPQTESAIERGFRARGPIDDQWGRSESFDPDNVGDIADEGTGHRG*
JGI10216J12902_1038187892	3300000956	Soil	MSTVEHRPGLGREPGWGGLDEPGPQTEGSIEPGYRLRGRVDDEWGLSESLDPDNVGDIADEGIGHRG*
JGI10216J12902_1048195261	3300000956	Soil	MTLFGWGIDEPGPQTESSVERGFRRAGPVDDQWGRSDSLDPDNVGDIADEGPGHRG*
JGI10216J12902_1085888871	3300000956	Soil	MSTVARRILGRGGLDDPGPQHRQWIERGFRLRGPAPQSGTAEWGRSESLDPDNVGDIADEGAGHRG*
JGI10216J12902_1141903262	3300000956	Soil	MPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGTGHRG*
JGI10216J12902_1161879662	3300000956	Soil	MTLFGWSGQEGPGPQTESSIERGFRRAGPVDDEWGRSDSLDPDNVGDIADEGPGHRG*
Ga0062593_1000083803	3300004114	Soil	MPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG*
Ga0062590_1005279382	3300004157	Soil	MSTVAQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0063356_1000121547	3300004463	Arabidopsis Thaliana Rhizosphere	MITLWQEFGWGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHRG*
Ga0063356_1059759091	3300004463	Arabidopsis Thaliana Rhizosphere	EFGWGELDEPGPQTEDSIERGFRLRGPVDDEYRSESLDPDRVGDIADEGTGHRG*
Ga0068993_100287663	3300005183	Natural And Restored Wetlands	MREEASNLMRRIGRAIGWGGLDESGPKTESSTERGFRIRGLDDNECGRSESLDPDNVGDIADEGMGHRG*
Ga0065712_104742122	3300005290	Miscanthus Rhizosphere	MWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0070676_108563272	3300005328	Miscanthus Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGP
Ga0070670_1010749742	3300005331	Switchgrass Rhizosphere	MRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG*
Ga0066388_1051756751	3300005332	Tropical Forest Soil	VRTPWQEFGWGDVDEPGPQTEDSIERGFRDPGVVDDLFGHSESFDPDNVGDIADEG
Ga0066388_1085612232	3300005332	Tropical Forest Soil	VRTPWQEFGWGDGDEPGPQTEDSIERGFREPGVVDDRYGRSDSFDPDNVGDIADEGPGHRG*
Ga0070677_101666872	3300005333	Miscanthus Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG*
Ga0068869_1003009662	3300005334	Miscanthus Rhizosphere	MTPTTFIGFWQTIGRSGFDEPGPQTESSIERGYRRRGPVDDEWGRSECLDPDNVGDIADEGRGHRG*
Ga0068868_1016104522	3300005338	Miscanthus Rhizosphere	VWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070668_1013312832	3300005347	Switchgrass Rhizosphere	MIWHGILELDESWPRTEEVIENDRRLHVSGAADDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0070669_1001062692	3300005353	Switchgrass Rhizosphere	MSTVAQGVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070688_1005156362	3300005365	Switchgrass Rhizosphere	MSTVVQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070659_1011105221	3300005366	Corn Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEG
Ga0070705_1003721114	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VRSPWREFGWGGLDEPGPQTEDSIERGFRGPGAVDDEFGRSESIDPDNVGDIADEGAGHRG*
Ga0070700_1005461742	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTMWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0070663_1009686122	3300005455	Corn Rhizosphere	MWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0070678_1014815712	3300005456	Miscanthus Rhizosphere	DARQWRRHEHRRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070702_1008236882	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0066905_1000955392	3300005713	Tropical Forest Soil	MAVQVRGMGQEFSREGLDEPRPLNESSIEREFRLRGPVDDEWGRSESLDPDNVGDIADEGVGHRG*
Ga0066903_1064312502	3300005764	Tropical Forest Soil	VRIGQEFSREGLDQPRPLNERSIEREFRLRGPVDDEWGRSESLDPDNVGDIADEG
Ga0068870_105614512	3300005840	Miscanthus Rhizosphere	MSTVVQGVSTGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0081538_102214522	3300005981	Tabebuia Heterophylla Rhizosphere	MRGLWQEFGWGGPEPGPQTESSIERGFRLRGPVDDQWGRSESLDPDKVGDIADEGAGHRG
Ga0075368_105584601	3300006042	Populus Endosphere	MIAIPWQDFGLGQFDEPGPQTESSIERGFRLPGPVDNEWGRSESFDPDNVGDIADEGPGHRG*
Ga0075428_1000115201	3300006844	Populus Rhizosphere	MNSNASWPEFGWGFDDAGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG*
Ga0075434_1000553963	3300006871	Populus Rhizosphere	MSTVAQEVGGGGLDEPGPQTESSIERRFRPRGSVDDEWGRSESIDPDNVGDIADEGMGHRG*
Ga0079215_100049475	3300006894	Agricultural Soil	MGDFRSPWQEFGWGEVDEPGPQTEDSIERGFRRSGAVDGEFGRSESLDPDNVGDIADEGPGHRG*
Ga0075426_101091182	3300006903	Populus Rhizosphere	MSTVAQEVGRGGLDEHGPQTESSIEPRFRICGSVDDEWGRSESLDPDNVGDIADEGMGHRG*
Ga0079218_134925602	3300007004	Agricultural Soil	WHELNSARLDEPRPQTIERGFRVRGPVDDEWGRSESLDPDNVGDIADEGAGHRG*
Ga0079218_135911281	3300007004	Agricultural Soil	VGDMWQEFGWGELDEPGPQTEDSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG*
Ga0105095_100950442	3300009053	Freshwater Sediment	MSTVLWREFGSRGFDEPGPQTESSIERGFRPPGPVDDEWGRSESLDPDNVGDIADEG
Ga0075418_120252302	3300009100	Populus Rhizosphere	MFGWGELDAPGPQTERLIERGFRLPGSVDDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0114129_102544281	3300009147	Populus Rhizosphere	MNSNASWPEFGWGLNDPGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG*
Ga0105243_119767111	3300009148	Miscanthus Rhizosphere	MSAVQSRDSAWRGLDEPGPQAEDSIERGFRLRGPVDEEWGRSESLDPDNVGDIADEGAGHRG*
Ga0105242_126077792	3300009176	Miscanthus Rhizosphere	MSDWGSLAEPGPQTETSIERGFRLAEPVDEQWGRAESFDPDNVGDIADEGAG
Ga0115925_109043071	3300009354	Swimming Pool Sandfilter Backwash	LDFAEFDEPGSQTESAVERGFRPRGPIDDEWGKSDSVDPENLGDIADEGAGHRG*
Ga0126377_102654032	3300010362	Tropical Forest Soil	MTTRASDEARQPTDSSTERRGRFVGPVGDDWGRSESFDPDNVGDIADEGMGHRG*
Ga0126377_119408062	3300010362	Tropical Forest Soil	MALAQVRGLWQEFGWGKLEEPRPQSEGSIERDFRLRGPVDEEWGRSESLDPDNVADIADEGAGHRG*
Ga0126381_1026258551	3300010376	Tropical Forest Soil	MEHGMSSVLDEPGPQTEPSIEHGVHLRRSVEDDWGRSESLDPDNVGDIADEGAGHRE*
Ga0134122_105318442	3300010400	Terrestrial Soil	MSTVAQEVGRGGLDEPGPQTESSSERGFRIRGSVDDEWGRSESIDPDNVGDIADEGMGHRG*
Ga0134123_104505321	3300010403	Terrestrial Soil	MSTVAQEVGRGGLDEPGLQTESSIEPRFRIRGSVDDEWGRSESIDPDNVGDI
Ga0138513_1000073771	3300011000	Soil	MSTVVWKKFGWRGLDEPGAQTESSIEREFGHPGPVPESINVEWGRSESLDPDNVGDVADEGAGHRG*
Ga0151489_15321072	3300011106	Soil	MFGWGGLDAPGSQTEGLIERGFRLPGPVDDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0137455_10172152	3300011429	Soil	MGDRWQEFGWGEPDEPGPQTESSIERGFRPPGSVDDEWGRSESLDPDDVGDIADEGPGHRG*
Ga0120191_100229923	3300012022	Terrestrial	EFGWGGPEPGPQTESSIERGFRLRGPVDGEWGRSESLDPDNVGDIADEGPGHRG*
Ga0157356_10262972	3300012474	Unplanted Soil	MSAVPWQDFGWGGLDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGPGHRG*
Ga0157354_10391152	3300012517	Unplanted Soil	MPEFGWGLDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGAGHRG*
Ga0137410_103134981	3300012944	Vadose Zone Soil	VRRLLQKFESVLVDEPGPRAESSLVRKFRVRRPVDDEWGRSESIDPDNVGDIADEGLGHR
Ga0164301_103825153	3300012960	Soil	GPEGDGSIEGASDFRGSVDDQWGRSESFDPDNVGDIADEGFGHRG*
Ga0157380_120789132	3300014326	Switchgrass Rhizosphere	VFDKRAMRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG*
Ga0157380_124194172	3300014326	Switchgrass Rhizosphere	MSGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0137409_101643691	3300015245	Vadose Zone Soil	MRQGSVRVRRLLQKFESVLVDEPGPRAESSLVRKFRVRRPVDDEWGRSESIDPDNVGDIADEGLGHR
Ga0132258_101962922	3300015371	Arabidopsis Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132256_1002300992	3300015372	Arabidopsis Rhizosphere	MPEFGWGFDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132256_1012319441	3300015372	Arabidopsis Rhizosphere	LDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132255_1015021692	3300015374	Arabidopsis Rhizosphere	MSAVPWQDFGWGGLDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0163161_101250552	3300017792	Switchgrass Rhizosphere	MSTVAQGVSAGVVWQEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190266_100850262	3300017965	Soil	MSEFGWGFNEAGPQTESSIERGFRRPGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190266_107753122	3300017965	Soil	VRELWPEFGWGEADEPGPQTESAIERGFRVPGPVDDELGRSESLDPQNVGDIADEGPGHR
Ga0184624_101011362	3300018073	Groundwater Sediment	MWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0190265_104458532	3300018422	Soil	MSTVAQRVDEPGPQTESTIQREFRVRGSVDDEWGRSESLDPDNVGDIADEGAGHRG
Ga0190275_105486172	3300018432	Soil	MSTVAQHVSSGEIRGLWQEFGWGEFDEPGPQTESAVERGFRLSGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190275_136250341	3300018432	Soil	SPVCSGDGGMTMWPDFGLGALDDPGPQTESAIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0190270_109027342	3300018469	Soil	MITLWQEFGWGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0190270_113646022	3300018469	Soil	MGGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190270_128347691	3300018469	Soil	AIRQETAQASGLWQEFDWGPLAEPGPRTESSVERGFRVRGPVDDEWGRSESIDPDNVGDIADEGMGHRG
Ga0190274_100311612	3300018476	Soil	MSVVAWPDSGWGGLDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGTGHRG
Ga0190274_107916151	3300018476	Soil	MSTVLWKKFGRTGLDALGQQTESSIEREFRLRGPAPESINVEWGRSESLDPDNVG
Ga0190274_110245152	3300018476	Soil	VSTFLWKGFGWGALDEPGPRTDSSMEREFRHRGPVADQWGRSESLDPDNVGDIADEGAGHRG
Ga0190274_126052791	3300018476	Soil	MSGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_100414112	3300018481	Soil	MPEFGWGLDEPGPQTESSIERGFRHPGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190271_109646482	3300018481	Soil	MWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_114746301	3300018481	Soil	MSAAAHRPGVWRELGLGGLDEPGPQTESSIERGFRLRGPVDDQWGHSESVDPDNVGDIADEGTGHRG
Ga0190271_120119721	3300018481	Soil	GWGGEPGPQTESSVERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_134109131	3300018481	Soil	MSAVPWQDFGWGGLDDPGPQTESAIERGFRPAGPVDNEWGRSESLDP
Ga0173481_104080812	3300019356	Soil	VRNPWQEFGWGEVDEPGPQTESSIERGFRLPGPIDDQWGRSDDLDPDNVGDIADEG
Ga0222622_105451982	3300022756	Groundwater Sediment	LPRISSVLGVELVAQGNEVAWGRRDERTPQTGGSIERETRRAGPVEDEWGRSESLDPDNVGDIADEGAGHRG
Ga0207682_105300042	3300025893	Miscanthus Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0207643_100296653	3300025908	Miscanthus Rhizosphere	MPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0207643_102657302	3300025908	Miscanthus Rhizosphere	MSTVVQGVSTGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207681_102308512	3300025923	Switchgrass Rhizosphere	RRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207650_104400281	3300025925	Switchgrass Rhizosphere	PGALDAERTLMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0207650_110925322	3300025925	Switchgrass Rhizosphere	MRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG
Ga0207659_108633612	3300025926	Miscanthus Rhizosphere	MVGGFEPEFGWGEPDEPGPQTENSIERGFRLAGPVDDEWGRSESVDPDNVGDIADEGAGHRG
Ga0207711_111405953	3300025941	Switchgrass Rhizosphere	MTPTTFIGFWQTIGRSGFDEPGPQTESSIERGYRRRGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207651_110306211	3300025960	Switchgrass Rhizosphere	RGTRRDVTAVHCHRRAASPVCSGDRSMTMWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0207668_110847282	3300025972	Switchgrass Rhizosphere	MIWHGILELDESWPRTEEVIENDRRLHVSGAADDQWGRSESLDPDNVGDIADEGAGHRG
Ga0207708_105542662	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0207708_109711551	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RRAERMPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0207683_113418332	3300026121	Miscanthus Rhizosphere	DARQWRRHEHRRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0209814_100175984	3300027873	Populus Rhizosphere	VRTPWQEFGWGDVDEPGPQTEDSIERGFRRRGLVDDQWGRSESVDPDNVGDIADEGTGHR
Ga0209486_111052351	3300027886	Agricultural Soil	WGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0209382_100149648	3300027909	Populus Rhizosphere	MNSNASWPEFGWGFDDAGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG
Ga0247820_112812651	3300028597	Soil	MSTVELGPGLWQELGWRGFDEPGPQTESSIERGFRLHGPVDDEWGRSDSLDPDNVGDIADEG
Ga0307282_106254331	3300028784	Soil	IRQEAAQARPWQEFGWTGFDEPRPQSESSIERETRLRGLIDDEWGRSESLDPDNVGDIADEGAGHRG
Ga0307503_101273242	3300028802	Soil	MWPEFGWGEIDEPGPQTENSIERGFRFREAVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0247824_100686162	3300028809	Soil	MSTVELGPGLWQELGWRGFDEPGPQTESSIERGFRLHGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0247825_101132082	3300028812	Soil	VRVTSAGATLVTTAPLMSSVFTWQEFGWGERDAPGPQTESSIERGFRMAGPLDDDWGRSDGLDPDNVGDIADEGMGHRG
Ga0247825_105678272	3300028812	Soil	VVTTAPMMSTAFAWQEFGWGERDAPGPQTESSIERGFRAAGPLDDEWGRSDGLDPDNVGDIADEGMGHRG
Ga0247825_109882701	3300028812	Soil	MASVREETGQMSGLWQEFGWGGDPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0308187_101335852	3300031114	Soil	RMHGIGQEVGLRRLDQRGRESESSIERDFRLRRPVDGEWGRSESLDPDNVGDIADEGAGHRG
Ga0307497_107400982	3300031226	Soil	MPSDERGQTRWALDEPGPQTESSSERGFRTRGPVDDEWGRSESLDPDDVGDIADEGMGHR
Ga0299914_104684672	3300031228	Soil	VRGLWQKFDWSELAEPGPQTESSIERGFRLRGPVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0310888_110179772	3300031538	Soil	MSTVAQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0310887_100459023	3300031547	Soil	MWQEFGWGEIDEPGPQTENSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0310892_114062151	3300031858	Soil	GEPDEPGPQTENSIERGFRLAGTVDHEWGRSDSVDPDNVGDIADEGTGHRG
Ga0310900_106140282	3300031908	Soil	MIWQDGGWREFTDRGPQTERSIERGDRLRHADNHWGRSESLDPDNVGDIADEGAGHRG
Ga0310900_107835192	3300031908	Soil	MGAVPWQDFGWGGLEDPGPQTESAIERGFRAAGPVDDQWGRSESLDPDNVGDIADEGPGHRG
Ga0310900_115238102	3300031908	Soil	QEFGWGEPDEPGPQTENSIERGFRLAGTVDHEWGRSDSVDPDNVGDIADEGTGHRG
Ga0310885_100267602	3300031943	Soil	MWQEFGWGELDEPGPQTEDSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0310884_102143582	3300031944	Soil	VPMPWQEFGWGEVDEPGPQTESSIERGFRLPGPIDDQWGRSENLDPDDVGDIADEGAGHRGKAAGPMRR
Ga0310906_106132992	3300032013	Soil	LCRGPGPGALDAERTLMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0310890_115954061	3300032075	Soil	MSTVVQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0310895_101379142	3300032122	Soil	MSTVAQGVSAGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0315910_101724473	3300032144	Soil	MPEFGWGLDEPGPQTESSIERGFRSHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0315912_100270072	3300032157	Soil	MISPWQEFGWGLDEPGPQTESSIERGFRLAGPVDDEWGRSDGLDPDSVGDIADEGAGHRG
Ga0315912_100395724	3300032157	Soil	MEFGWAVDDAGPQTESSIERGFRARGPVDDEWGRSDSLDPDKVGDIADEGAGHRG
Ga0307471_1004707193	3300032180	Hardwood Forest Soil	EVGRGGLDESGPQTESSIEPRFRLRGSVDDEWGRSESIDPDNVGDIADEGMGHRG
Ga0310896_104719132	3300032211	Soil	MSTVEHRPGLGREPGWGGLDEPGPLTEGSLEPGYRLRGRVDDEWGLSESLDPDNVGDIADEGIGHRG
Ga0364933_009517_1798_1983	3300034150	Sediment	MGDRWQEFGWGEPDEPGPQTESSIERGFRPPGSVDDEWGRSESLDPDDVGDIADEGPGHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060693

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences