Metagenome Family F061489

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061489
Family Type	Metagenome
Number of Sequences	131
Average Sequence Length	47 residues
Representative Sequence	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGVGVFVMGLLRR
Number of Associated Samples	58
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.75 %
% of genes near scaffold ends (potentially truncated)	23.66 %
% of genes from short scaffolds (< 2000 bps)	77.86 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.672 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (34.351 % of family members)
Environment Ontology (ENVO)	Unclassified (54.198 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 84.00% β-sheet: 0.00% Coil/Unstructured: 16.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF01594	AI-2E_transport	13.74
PF06736	TMEM175	8.40
PF03073	TspO_MBR	6.87
PF04191	PEMT	2.29
PF03729	DUF308	1.53
PF00005	ABC_tran	1.53
PF12697	Abhydrolase_6	1.53
PF09579	Spore_YtfJ	0.76
PF03724	META	0.76
PF00581	Rhodanese	0.76
PF01116	F_bP_aldolase	0.76
PF13263	PHP_C	0.76
PF00316	FBPase	0.76
PF13186	SPASM	0.76
PF01556	DnaJ_C	0.76
PF06348	DUF1059	0.76
PF11167	DUF2953	0.76
PF10011	DUF2254	0.76
PF02824	TGS	0.76
PF09851	SHOCT	0.76
PF07883	Cupin_2	0.76
PF10009	DUF2252	0.76
PF00520	Ion_trans	0.76
PF07885	Ion_trans_2	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	13.74
COG3548	Uncharacterized membrane protein	Function unknown [S]	8.40
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	6.87
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.53
COG0158	Fructose-1,6-bisphosphatase	Carbohydrate transport and metabolism [G]	0.76
COG0191	Fructose/tagatose bisphosphate aldolase	Carbohydrate transport and metabolism [G]	0.76
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG3187	Heat shock protein HslJ	Posttranslational modification, protein turnover, chaperones [O]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
All Organisms	root	All Organisms	47.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
cellular organisms	root	All Organisms → cellular organisms	47.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	38.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	38.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.05 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	33.59 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.53 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	33.59 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	32.06 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.76 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
unclassified Methanomicrobiales	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales	8.40 %
Methanoregulaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	7.63 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
Methylopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila	0.76 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Methanomicrobiales archaeon HGW-Methanomicrobiales-1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	8.40 %
Methanoregula	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	5.34 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
unclassified Methylopila	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila	0.76 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Methanomicrobiales archaeon HGW-Methanomicrobiales-1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	8.40 %
Methanoregula formicica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2.29 %
Methanoregula boonei	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei	1.53 %
Bifidobacterium merycicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium merycicum	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
Methylopila sp. M107	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. M107	0.76 %
unclassified Methanoregula	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula	0.76 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.67 %
Methanomicrobiales archaeon HGW-Methanomicrobiales-1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	8.40 %
Methanoregula formicica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2.29 %
Methanoregula boonei 6A8	strain	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei → Methanoregula boonei 6A8	1.53 %
Bifidobacterium merycicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium merycicum	1.53 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1.53 %
Methanoregula sp. PtaU1.Bin051	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp. PtaU1.Bin051	0.76 %
Methylopila sp. M107	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. M107	0.76 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000316\|WSSedB2CaDRAFT_1012758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	721	Open in IMG/M
3300000317\|WSSedL2TaDRAFT_1000759	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300000894\|WSSedL1B2DRAFT_1004123	Not Available	1376	Open in IMG/M
3300001213\|JGIcombinedJ13530_102832255	Not Available	538	Open in IMG/M
3300002961\|JGI11641J44799_10001309	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	7764	Open in IMG/M
3300002961\|JGI11641J44799_10005898	Not Available	3720	Open in IMG/M
3300002961\|JGI11641J44799_10035697	Not Available	1455	Open in IMG/M
3300002961\|JGI11641J44799_10134398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylopila → unclassified Methylopila → Methylopila sp. M107	693	Open in IMG/M
3300003432\|JGI20214J51088_10035565	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula	3441	Open in IMG/M
3300003432\|JGI20214J51088_10077144	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2336	Open in IMG/M
3300003432\|JGI20214J51088_10082594	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2255	Open in IMG/M
3300003432\|JGI20214J51088_10110904	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1936	Open in IMG/M
3300003432\|JGI20214J51088_10148643	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1656	Open in IMG/M
3300003432\|JGI20214J51088_10158125	All Organisms → cellular organisms → Archaea → Euryarchaeota	1601	Open in IMG/M
3300003432\|JGI20214J51088_10192115	Not Available	1437	Open in IMG/M
3300003432\|JGI20214J51088_10271806	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	1169	Open in IMG/M
3300003432\|JGI20214J51088_10283544	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → unclassified Methanoregula → Methanoregula sp. PtaU1.Bin051	1139	Open in IMG/M
3300003432\|JGI20214J51088_10483165	Not Available	806	Open in IMG/M
3300003541\|JGI20214J51650_10069767	Not Available	2359	Open in IMG/M
3300003541\|JGI20214J51650_10243530	Not Available	1242	Open in IMG/M
3300003858\|Ga0031656_10020331	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	2770	Open in IMG/M
3300003858\|Ga0031656_10177773	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	736	Open in IMG/M
3300003858\|Ga0031656_10217191	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	653	Open in IMG/M
3300003858\|Ga0031656_10286827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium merycicum	557	Open in IMG/M
3300003859\|Ga0031653_10006792	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3179	Open in IMG/M
3300003860\|Ga0031658_1001136	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	4786	Open in IMG/M
3300003860\|Ga0031658_1010506	Not Available	1572	Open in IMG/M
3300003860\|Ga0031658_1107743	Not Available	508	Open in IMG/M
3300003861\|Ga0031654_10055422	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300003861\|Ga0031654_10082557	Not Available	897	Open in IMG/M
3300004078\|Ga0055513_10086860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium merycicum	704	Open in IMG/M
3300004078\|Ga0055513_10140604	Not Available	587	Open in IMG/M
3300004242\|Ga0066601_10308556	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	621	Open in IMG/M
3300004481\|Ga0069718_10004510	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei → Methanoregula boonei 6A8	2655	Open in IMG/M
3300004481\|Ga0069718_10046303	Not Available	783	Open in IMG/M
3300004481\|Ga0069718_10145626	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	3121	Open in IMG/M
3300004481\|Ga0069718_16216850	Not Available	905	Open in IMG/M
3300009078\|Ga0105106_10110466	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2022	Open in IMG/M
3300009111\|Ga0115026_10800649	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	737	Open in IMG/M
3300009111\|Ga0115026_10901014	Not Available	699	Open in IMG/M
3300009131\|Ga0115027_10677180	Not Available	770	Open in IMG/M
3300009167\|Ga0113563_10756454	All Organisms → cellular organisms → Archaea → Euryarchaeota	1096	Open in IMG/M
3300009179\|Ga0115028_10055216	Not Available	2030	Open in IMG/M
3300009179\|Ga0115028_11039520	Not Available	661	Open in IMG/M
3300009179\|Ga0115028_11554176	Not Available	564	Open in IMG/M
3300014303\|Ga0075358_1048391	Not Available	713	Open in IMG/M
3300025963\|Ga0210146_1001061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	2626	Open in IMG/M
3300025963\|Ga0210146_1016799	Not Available	737	Open in IMG/M
3300025967\|Ga0210136_1004530	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula boonei → Methanoregula boonei 6A8	1430	Open in IMG/M
3300025975\|Ga0210091_1009515	Not Available	912	Open in IMG/M
3300026026\|Ga0210129_1003273	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2231	Open in IMG/M
3300026026\|Ga0210129_1018036	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	1126	Open in IMG/M
3300026353\|Ga0256818_1031803	Not Available	532	Open in IMG/M
3300027715\|Ga0208665_10050428	All Organisms → cellular organisms → Archaea → Euryarchaeota	1214	Open in IMG/M
3300027715\|Ga0208665_10052692	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1191	Open in IMG/M
3300027715\|Ga0208665_10059628	Not Available	1128	Open in IMG/M
3300027715\|Ga0208665_10115518	Not Available	831	Open in IMG/M
3300027739\|Ga0209575_10281265	Not Available	577	Open in IMG/M
3300027800\|Ga0209800_10192963	All Organisms → cellular organisms → Archaea → Euryarchaeota	887	Open in IMG/M
3300027885\|Ga0209450_10093105	Not Available	1980	Open in IMG/M
3300027887\|Ga0208980_10001520	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	14078	Open in IMG/M
3300027887\|Ga0208980_10337218	Not Available	872	Open in IMG/M
3300027890\|Ga0209496_10443566	All Organisms → cellular organisms → Archaea → Euryarchaeota	681	Open in IMG/M
3300027896\|Ga0209777_10359575	Not Available	1106	Open in IMG/M
3300027897\|Ga0209254_10069130	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula → Methanoregula formicica	3026	Open in IMG/M
3300027897\|Ga0209254_10610196	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	768	Open in IMG/M
3300027897\|Ga0209254_11040268	All Organisms → cellular organisms → Archaea → Euryarchaeota	529	Open in IMG/M
3300027899\|Ga0209668_10505803	Not Available	802	Open in IMG/M
3300027899\|Ga0209668_10589638	Not Available	742	Open in IMG/M
3300027899\|Ga0209668_10599228	Not Available	736	Open in IMG/M
3300027899\|Ga0209668_10716806	Not Available	672	Open in IMG/M
3300027899\|Ga0209668_10763450	Not Available	650	Open in IMG/M
3300027900\|Ga0209253_10540631	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	863	Open in IMG/M
3300027902\|Ga0209048_10006733	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	10720	Open in IMG/M
3300027902\|Ga0209048_10047862	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3510	Open in IMG/M
3300027902\|Ga0209048_10077722	Not Available	2610	Open in IMG/M
3300027902\|Ga0209048_10345358	Not Available	1032	Open in IMG/M
3300031707\|Ga0315291_10063021	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	4121	Open in IMG/M
3300031707\|Ga0315291_10125991	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2720	Open in IMG/M
3300031707\|Ga0315291_10666355	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	930	Open in IMG/M
3300031707\|Ga0315291_11329115	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	578	Open in IMG/M
3300031707\|Ga0315291_11434958	Not Available	547	Open in IMG/M
3300031707\|Ga0315291_11572855	Not Available	514	Open in IMG/M
3300031746\|Ga0315293_10302627	Not Available	1282	Open in IMG/M
3300031746\|Ga0315293_10818391	Not Available	680	Open in IMG/M
3300031772\|Ga0315288_10127504	Not Available	2865	Open in IMG/M
3300031772\|Ga0315288_10302527	Not Available	1670	Open in IMG/M
3300031772\|Ga0315288_11072304	Not Available	708	Open in IMG/M
3300031772\|Ga0315288_11104944	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	693	Open in IMG/M
3300031772\|Ga0315288_11465682	Not Available	566	Open in IMG/M
3300031834\|Ga0315290_10863498	Not Available	770	Open in IMG/M
3300031873\|Ga0315297_10225624	Not Available	1548	Open in IMG/M
3300031873\|Ga0315297_10269106	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	1415	Open in IMG/M
3300031873\|Ga0315297_10862207	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	753	Open in IMG/M
3300031885\|Ga0315285_10870915	Not Available	555	Open in IMG/M
3300031952\|Ga0315294_10744193	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	853	Open in IMG/M
3300031952\|Ga0315294_11210396	Not Available	612	Open in IMG/M
3300031952\|Ga0315294_11235689	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	603	Open in IMG/M
3300031997\|Ga0315278_10173438	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	2212	Open in IMG/M
3300031997\|Ga0315278_10264901	Not Available	1775	Open in IMG/M
3300031997\|Ga0315278_11072442	Not Available	798	Open in IMG/M
3300031997\|Ga0315278_11335787	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	697	Open in IMG/M
3300031997\|Ga0315278_11639526	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300032046\|Ga0315289_10707433	Not Available	910	Open in IMG/M
3300032046\|Ga0315289_11237283	Not Available	597	Open in IMG/M
3300032046\|Ga0315289_11431166	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	533	Open in IMG/M
3300032053\|Ga0315284_10118876	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3512	Open in IMG/M
3300032053\|Ga0315284_11004558	Not Available	939	Open in IMG/M
3300032053\|Ga0315284_11397182	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	751	Open in IMG/M
3300032143\|Ga0315292_10449934	Not Available	1084	Open in IMG/M
3300032156\|Ga0315295_10018651	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	6157	Open in IMG/M
3300032156\|Ga0315295_10463212	Not Available	1289	Open in IMG/M
3300032156\|Ga0315295_10690298	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1030	Open in IMG/M
3300032163\|Ga0315281_12312318	All Organisms → cellular organisms → Archaea → Euryarchaeota	506	Open in IMG/M
3300032177\|Ga0315276_10357113	Not Available	1560	Open in IMG/M
3300032177\|Ga0315276_10423814	Not Available	1426	Open in IMG/M
3300032342\|Ga0315286_10098437	Not Available	3131	Open in IMG/M
3300032342\|Ga0315286_11515803	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300032342\|Ga0315286_11920677	Not Available	553	Open in IMG/M
3300032397\|Ga0315287_10521836	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1409	Open in IMG/M
3300032401\|Ga0315275_10642224	Not Available	1183	Open in IMG/M
3300032401\|Ga0315275_12146139	Not Available	585	Open in IMG/M
3300033414\|Ga0316619_10392300	Not Available	1097	Open in IMG/M
3300033416\|Ga0316622_103089047	Not Available	529	Open in IMG/M
3300033418\|Ga0316625_100211008	Not Available	1286	Open in IMG/M
3300033418\|Ga0316625_100626822	Not Available	884	Open in IMG/M
3300033418\|Ga0316625_101596698	Not Available	623	Open in IMG/M
3300033433\|Ga0326726_10015838	Not Available	6567	Open in IMG/M
3300033433\|Ga0326726_10268989	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon HGW-Methanomicrobiales-1	1592	Open in IMG/M
3300033433\|Ga0326726_10662392	Not Available	1006	Open in IMG/M
3300033483\|Ga0316629_10857105	Not Available	703	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	88.55%
Terrestrial	Environmental → Terrestrial	11.45%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	66.41%
Marine	Environmental → Aquatic → Marine	22.14%
Soil	Environmental → Terrestrial → Soil	6.11%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.05%
Peat	Environmental → Terrestrial → Peat	2.29%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	34.35%
Wetlands	Environmental → Aquatic → Marine → Wetlands	22.14%
Lentic	Environmental → Aquatic → Freshwater → Lentic	19.08%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.11%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.05%
Pond	Environmental → Aquatic → Freshwater → Pond	2.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.29%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.53%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	34.35%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	19.08%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	16.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.11%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.34%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.05%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	2.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.29%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.76%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	34.35%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	19.08%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	16.79%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	5.34%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.34%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.58%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	3.05%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.05%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	2.29%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.29%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.53%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000316	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface Sediment Feb2011 Site B2 Cattail	Environmental	Open in IMG/M
3300000317	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L2 Tule	Environmental	Open in IMG/M
3300000894	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004078	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D2	Environmental	Open in IMG/M
3300004242	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300014303	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D1	Environmental	Open in IMG/M
3300025963	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025967	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025975	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026353	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR4	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027739	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Medium cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027800	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedB2CaDRAFT_10127581	3300000316	Wetland	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLL
WSSedL2TaDRAFT_10007591	3300000317	Wetland	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFL
WSSedL1B2DRAFT_10041231	3300000894	Wetland	MIAGILGVICGVVVILPAGYMGTLLGAMFLCMGVGVFIMGLLRGRLN*
JGIcombinedJ13530_1028322552	3300001213	Wetland	LGVIVGIFLIAPRGALGIVLGVMFLLGGAGIFVMGLLR*
JGI11641J44799_100013091	3300002961	Wetland	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGIFVMGLLR*
JGI11641J44799_100058983	3300002961	Wetland	MVNFMLMIAGVLGVIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
JGI11641J44799_100356971	3300002961	Wetland	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGVFVMGLLR*
JGI11641J44799_101343981	3300002961	Wetland	MVNIGFMIAGVLGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFLMGLLRR*
JGI20214J51088_100355651	3300003432	Wetland	MVNIGFMIAGVLGAVVGIFLLAPSTYXGTVLGAMFLLGGVGVFLMGLLRR*
JGI20214J51088_100771444	3300003432	Wetland	MVNIGFLIAGALGAIVGILLISAVGALGTLLGAMFLLGGVGIFVMGILR*
JGI20214J51088_100825943	3300003432	Wetland	MVNSGFVIAGILGAIVGVLLISAVGALGTMLGAMFLCGGVGVLVMGIVR*
JGI20214J51088_101109043	3300003432	Wetland	MVNFMLMIAGILGVIVGFVLILPAGYMGTLLGAMFLLMGVGVFVMGLVRGRLN*
JGI20214J51088_101486433	3300003432	Wetland	MVNIGFMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR*
JGI20214J51088_101581252	3300003432	Wetland	MVNVGLMIAGILGVIVGIFLISPSGTLGTALGAMFLLGGVGVFVMGLLR*
JGI20214J51088_101921153	3300003432	Wetland	ILGVIVGIVLIAPSGALGTALGAMFLLGGVGVFVMGLLR*
JGI20214J51088_102718062	3300003432	Wetland	MVXIGFMIAGILGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFVMGLLRR*
JGI20214J51088_102835442	3300003432	Wetland	MVNFMLMIAGILGVIVGIVLILPAGYMGTFLGAMFLLMGVGVFVMGLVRGRLN*
JGI20214J51088_104831651	3300003432	Wetland	MIAGILGLIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
JGI20214J51650_100697671	3300003541	Wetland	MVNIGFMIAGVLGAVVGIFLLAPSTYIGTVLGAMFLLGGVGVFLMGLLRR*
JGI20214J51650_102435302	3300003541	Wetland	MIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGIFVMGLLR*
Ga0031656_100203313	3300003858	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLIAPSGYLGTVLGAMFLLGGAGVFVMGLLR*
Ga0031656_101777732	3300003858	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYVGTVLGAMFLLGGAGVFVMGLLRR*
Ga0031656_102171911	3300003858	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGVFVMGLLRR*
Ga0031656_102868271	3300003858	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGAGVFVMGLLRR*
Ga0031653_100067922	3300003859	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR*
Ga0031658_10011363	3300003860	Freshwater Lake Sediment	MVNFLLMIAGILGLIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
Ga0031658_10105062	3300003860	Freshwater Lake Sediment	MFAGILGVIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
Ga0031658_11077432	3300003860	Freshwater Lake Sediment	MVNIGFMIAGILGAVVGIFLLAPSTYIGTVLGAMFLLGGVGVFVMGLLRR*
Ga0031654_100554223	3300003861	Freshwater Lake Sediment	MIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR*
Ga0031654_100825571	3300003861	Freshwater Lake Sediment	MVNFMLMIAGILGVIVGFVLILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL*
Ga0055513_100868601	3300004078	Natural And Restored Wetlands	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVG
Ga0055513_101406041	3300004078	Natural And Restored Wetlands	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGVFVM
Ga0066601_103085562	3300004242	Freshwater	ILGVVVGIFLLAPSTYIGTVLGAMFLLGGVGVFLMGLLRR*
Ga0069718_100045103	3300004481	Sediment	MIAGILGVVVGIFLLAPSTYIGTVLGAMFLLGGVGVFLMGLLRR*
Ga0069718_100463032	3300004481	Sediment	MVNIGLMIAGILGVVVGIFLIAPSGYFGTVLGAMFLLGGAGVFVMGLLR*
Ga0069718_101456264	3300004481	Sediment	MVNIGLMIAGILGVIVGIFLLAPSTYIGTVLGAMFLLGGVGVFLMGLLRR*
Ga0069718_162168503	3300004481	Sediment	VNIGLMVAGILGVIVGIFLIAPSGALGTALGAIFLLGGVGIFVMGLLRR*
Ga0105106_101104662	3300009078	Freshwater Sediment	MIAGILGVVVGIFLIAPSGYFGTVLGAMFLLGGVGVFIMGLLR*
Ga0115026_108006491	3300009111	Wetland	MVNIGFMVAGILGAVVGIVLLAPSTYVGTVLGAMFLLGGVGVFVMGLLR*
Ga0115026_109010142	3300009111	Wetland	MVNIGFMVAGILGAVVGIVLLAPSTYVGTVLGAMFLLGGVGVFLMGLLR*
Ga0115027_106771802	3300009131	Wetland	MVNIGFMIAGILGAVVGIGLLAPSTYIGTVLGVMFLLGGAGVFVMGLLRR*
Ga0113563_107564542	3300009167	Freshwater Wetlands	MVNIGLMIAGILGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFVMGLLR*
Ga0115028_100552162	3300009179	Wetland	MIAGVLGVIVGIFLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
Ga0115028_110395203	3300009179	Wetland	MVNFLLMIAGILGLIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
Ga0115028_115541761	3300009179	Wetland	IVGIFLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN*
Ga0075358_10483912	3300014303	Natural And Restored Wetlands	MLMIAGILGVIVGFVLILPAGYMGTLLGAMFLLMGVGVFVMGLVRGRLN*
Ga0210146_10010611	3300025963	Natural And Restored Wetlands	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGIFVMGLLR
Ga0210146_10167991	3300025963	Natural And Restored Wetlands	MVNIGFMIAGVLGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFLMGLLRR
Ga0210136_10045303	3300025967	Natural And Restored Wetlands	MVNIGLMIAGILGVIVGIVLIAPSGALGTALGAMFLLGGVGVFVMGLLR
Ga0210091_10095152	3300025975	Natural And Restored Wetlands	MLMIAGVLGVIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0210129_10032733	3300026026	Natural And Restored Wetlands	MVNIGFMIAGVLGAVVGIFLLAPSTYVGTVLGAMFLLMGVGVFVMGLVRGRLN
Ga0210129_10180362	3300026026	Natural And Restored Wetlands	MVNIGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0256818_10318031	3300026353	Sediment	MVNIGLMIAGILGVIVGIFLIAPSGALGTALGAMFLLGGVGVFVMGLLR
Ga0208665_100504282	3300027715	Deep Subsurface	MVNIGFMIAGILGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFLMGLLRR
Ga0208665_100526922	3300027715	Deep Subsurface	MVNIGFMVAGILGAVVGIVLLAPSTYVGTVLGAMFLLGGIGVFVMGLLR
Ga0208665_100596284	3300027715	Deep Subsurface	MVNFLLMIAGILGLIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0208665_101155181	3300027715	Deep Subsurface	MVNFLLMIAGVLGVIVGIFLILPAGFMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0209575_102812652	3300027739	Freshwater	MVNLGLMIAGILGVVVGIFLLAPSTYIGTVLGAMFLLGGVGVFLMGLLRR
Ga0209800_101929632	3300027800	Freshwater	MVNIGLMIAGILGVVVGIFLLAPTTYIGTVLGAMFLLGGVGVFLMGLLRR
Ga0209450_100931052	3300027885	Freshwater Lake Sediment	MVNIGFMIAGILGAVVGIFLLAPSTYVGTVLGALFLLGGVGVFVMGLLR
Ga0208980_1000152015	3300027887	Wetland	MVNFMLMIAGVLGVIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0208980_103372182	3300027887	Wetland	MVNFLLMIAGILGLIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0209496_104435662	3300027890	Wetland	MVNIGFMVAGILGAVVGIVLLAPSTYVGTILGAMFLLGGVGVFLMGLLR
Ga0209777_103595751	3300027896	Freshwater Lake Sediment	GVIVGFALILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL
Ga0209254_100691303	3300027897	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLIAPSGYLGTVLGAMFLLGGAGVFVMGLLR
Ga0209254_106101961	3300027897	Freshwater Lake Sediment	MVNIGFMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0209254_110402682	3300027897	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGVFVMGLLRR
Ga0209668_105058032	3300027899	Freshwater Lake Sediment	MVNIGFMIAGILGAVVGIFLLAPSTYVGTVLGAMF
Ga0209668_105896382	3300027899	Freshwater Lake Sediment	MVNIGFMIAGILGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFVMGLLRR
Ga0209668_105992282	3300027899	Freshwater Lake Sediment	MVNFMLMIAGVLGVICGVVLILPAGYMGTLLGAMFLCMGVGVFVMGLLRGRLN
Ga0209668_107168062	3300027899	Freshwater Lake Sediment	MVNFLLMFAGILGVIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0209668_107634502	3300027899	Freshwater Lake Sediment	MVNIGLMIAGILGVIVGIILIAPSGALGTALGAMFLLGGV
Ga0209253_105406312	3300027900	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0209048_100067332	3300027902	Freshwater Lake Sediment	MVNFMLMIAGILGVIVGFVLILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL
Ga0209048_100478621	3300027902	Freshwater Lake Sediment	AGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0209048_100777225	3300027902	Freshwater Lake Sediment	MVNLGIMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLG
Ga0209048_103453582	3300027902	Freshwater Lake Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLG
Ga0315291_100630212	3300031707	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYVGTVLGAMFLLGGAGVFVMGLLRR
Ga0315291_101259911	3300031707	Sediment	MVNIGLMIAGILGVVVGIFVLAPSTYLGTVLGAMFLLGGAGVFVMGLLR
Ga0315291_106663552	3300031707	Sediment	MVNLGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0315291_113291151	3300031707	Sediment	GVIVGFVLILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL
Ga0315291_114349582	3300031707	Sediment	MVNIGLMIAGILGVVVGIFVLAPSTYLGTVLGAMFLLGGA
Ga0315291_115728552	3300031707	Sediment	MVNFMLMIAGVLGVIVGVVLILPAGYMGTLLGAMFLLMGVGVFVMGLLRSHL
Ga0315293_103026271	3300031746	Sediment	MVNLGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFL
Ga0315293_108183912	3300031746	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGIFVMG
Ga0315288_101275042	3300031772	Sediment	MVNIGIMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0315288_103025272	3300031772	Sediment	MLMIAGVLGVIVGVVLILPAGYMGTLLGAMFLLMGVGVFVMGLLRSHL
Ga0315288_110723042	3300031772	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGA
Ga0315288_111049441	3300031772	Sediment	ILGAFVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0315288_114656821	3300031772	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGIFV
Ga0315290_108634982	3300031834	Sediment	MLMIAGVLGVIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLLRSHL
Ga0315297_102256245	3300031873	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFL
Ga0315297_102691063	3300031873	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGVGVFVMGLLRR
Ga0315297_108622072	3300031873	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGIFVMGLLR
Ga0315285_108709151	3300031885	Sediment	MVNLGLMIAGILGVVVGIFLLAPSTYVGTVLGAMFLLGGAGVFVMGLLRR
Ga0315294_107441932	3300031952	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGIFVMGLLRR
Ga0315294_112103961	3300031952	Sediment	MVNIGFMIAGILGAVVGIFLLAPSTYIGTVLGAMFLLGGVGVFVMGLLRR
Ga0315294_112356891	3300031952	Sediment	VNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGVFVMGLLRR
Ga0315278_101734381	3300031997	Sediment	MIAGILGVICGVVLILPAGYMGTLLGAMFLCMGVGVFVMGLLRGRLN
Ga0315278_102649011	3300031997	Sediment	MVNFMLMIAGVLGVIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLLRSHL
Ga0315278_110724421	3300031997	Sediment	MVNIGIMIAGILGVVVGIFLLAPSTYLGTVLGAMFLL
Ga0315278_113357872	3300031997	Sediment	MVNIGLMIAGILGVIVGIFLIAPSGYLGTVLGAMFLLGGVGVFVMGLLR
Ga0315278_116395262	3300031997	Sediment	MVNFMLMIAGILGVIVGVVLILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL
Ga0315289_107074331	3300032046	Sediment	MVNIGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLRR
Ga0315289_112372832	3300032046	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAGI
Ga0315289_114311662	3300032046	Sediment	LGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0315284_101188764	3300032053	Sediment	MIAGILGVVVGIFVLAPSTYLGTVLGAMFLLGGAGVFVMGLLR
Ga0315284_110045582	3300032053	Sediment	MVNLGIMIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0315284_113971821	3300032053	Sediment	MVNLGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLRR
Ga0315292_104499342	3300032143	Sediment	MLMIAGILGVIVGFVLIIPEGAMGTLLGAMFLLMGVGVFVMGLVRSHL
Ga0315295_100186513	3300032156	Sediment	MIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLRR
Ga0315295_104632121	3300032156	Sediment	MVNFMLMIAGILGVIVGFVLIIPEGAMGTLLGAMFLLMGVGVFVMGLVRSHL
Ga0315295_106902982	3300032156	Sediment	MVNIGFMIAGILGAVVGIFVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0315281_123123181	3300032163	Sediment	GILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0315276_103571132	3300032177	Sediment	MVNFMLMIAGILGVIVGVVLILPEGAMGTLLGAMFLLMGVGVFVMGLVRSHL
Ga0315276_104238141	3300032177	Sediment	MVNIGLMIAGILGVVVGIFLLAPSTYMGTVLGAMFLLGGAG
Ga0315286_100984374	3300032342	Sediment	MIAGILGVVVGIFLLAPSTYLGTVLGAMFLLGGVGVFVMGLLRR
Ga0315286_115158032	3300032342	Sediment	MLMIAGILGVIVGVVLILPAGYMGTLLGAMFLLMGVGVFVMGLFRSHL
Ga0315286_119206771	3300032342	Sediment	MLMIAGVLGVIVGVVLILPAGYMGTLLGAMFLLMGAGVFVMGLFRSHL
Ga0315287_105218361	3300032397	Sediment	AGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFVMGLLR
Ga0315275_106422242	3300032401	Sediment	MVNFMLMIAGILGVIVGIVLILPAGYMGTLLGAMFLLMGVGVFVMGLVRGRLN
Ga0315275_121461392	3300032401	Sediment	MVNLGLMIAGILGAVVGIVVLAPSTYVGTVLGAMFLLGGVGVFV
Ga0316619_103923002	3300033414	Soil	MIAGILGLIVGIVLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0316622_1030890471	3300033416	Soil	MVNIGFMVAGILGAVVGIVLLAPSTYVGTVLGAMFLLGGVGVFLMGLLR
Ga0316625_1002110081	3300033418	Soil	MVNFLLMIAGVLGVIVGIFLILPAGYMGTLLGAMFLLMGAGVFVMGLVRGRLN
Ga0316625_1006268223	3300033418	Soil	MVNVGFMVAGILGAVVGIFLIAPSTYVGTILGAMFLLGGAGVFVMGLLRR
Ga0316625_1015966982	3300033418	Soil	MVNIGLLIAGALGAIVGILLISAVGALGTVLGAMFLFGGVGVFVMGILR
Ga0326726_100158386	3300033433	Peat Soil	MVNTGFLIAGALGAIVGIVLISAVGALGTVLGAMFLLGGVGIFVMGLLR
Ga0326726_102689892	3300033433	Peat Soil	MVNVGFVIAGILGAIVGVLLISAVGALGTMLGAMFLCGGVGILVMGILR
Ga0326726_106623921	3300033433	Peat Soil	MVNIGLMIAGILGVIVGIILIAPSGALGTALGAMFLLGGVGIFVMGLLR
Ga0316629_108571051	3300033483	Soil	MVNIGFMIAGILGAVVGIFLLAPSTYVGTVLGAMFLLGGVGVFLMGLLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061489

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences