Metagenome / Metatranscriptome Family F061825

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061825
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	46 residues
Representative Sequence	MTHLTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN
Number of Associated Samples	96
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.22 %
% of genes near scaffold ends (potentially truncated)	17.56 %
% of genes from short scaffolds (< 2000 bps)	80.92 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.206 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (36.641 % of family members)
Environment Ontology (ENVO)	Unclassified (52.672 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (38.931 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.99% β-sheet: 0.00% Coil/Unstructured: 63.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF02622	DUF179	13.74
PF13458	Peripla_BP_6	9.16
PF00563	EAL	4.58
PF00486	Trans_reg_C	3.82
PF11026	DUF2721	3.82
PF00691	OmpA	3.05
PF02416	TatA_B_E	3.05
PF05708	Peptidase_C92	2.29
PF00196	GerE	2.29
PF13365	Trypsin_2	2.29
PF00072	Response_reg	1.53
PF06441	EHN	1.53
PF00873	ACR_tran	1.53
PF06146	PsiE	1.53
PF02518	HATPase_c	1.53
PF08447	PAS_3	1.53
PF03729	DUF308	0.76
PF00392	GntR	0.76
PF12706	Lactamase_B_2	0.76
PF02405	MlaE	0.76
PF06481	COX_ARM	0.76
PF02321	OEP	0.76
PF13424	TPR_12	0.76
PF02678	Pirin	0.76
PF00931	NB-ARC	0.76
PF02308	MgtC	0.76
PF00116	COX2	0.76
PF13193	AMP-binding_C	0.76
PF06004	DUF903	0.76
PF07732	Cu-oxidase_3	0.76
PF00381	PTS-HPr	0.76
PF00120	Gln-synt_C	0.76
PF13561	adh_short_C2	0.76
PF05368	NmrA	0.76
PF14833	NAD_binding_11	0.76
PF13519	VWA_2	0.76
PF00034	Cytochrom_C	0.76
PF12680	SnoaL_2	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	13.74
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	4.58
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	4.58
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	4.58
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	4.58
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	3.05
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	1.53
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.53
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	1.53
COG3223	Phosphate starvation-inducible membrane PsiE (function unknown)	General function prediction only [R]	1.53
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.76
COG1285	Magnesium uptake protein YhiD/SapB, involved in acid resistance	Inorganic ion transport and metabolism [P]	0.76
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.76
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	0.76
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.76
COG3174	Membrane component of predicted Mg2+ transport system, contains DUF4010 domain	Inorganic ion transport and metabolism [P]	0.76
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.76
COG4263	Nitrous oxide reductase	Inorganic ion transport and metabolism [P]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.21 %
Unclassified	root	N/A	16.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.21 %
Unclassified	root	N/A	16.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.21 %
Unclassified	root	N/A	16.79 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.23 %
Unclassified	root	N/A	16.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.53 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	25.19 %
Unclassified	root	N/A	16.79 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	7.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.29 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.76 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.76 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.79 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	12.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	7.63 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.05 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.53 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.76 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	7.63 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.29 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.53 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.76 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.76 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	7.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.53 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.76 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.76 %
Plasticicumulans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans	0.76 %
Azotobacter group	subfamily	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group	0.76 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	7.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.53 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	0.76 %
Azotobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter	0.76 %
Cytophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	0.76 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.76 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.21 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	7.63 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.53 %
Azotobacter beijerinckii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	0.76 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	0.76 %
Cytophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	0.76 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.76 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16654656	All Organisms → cellular organisms → Bacteria → Proteobacteria	1799	Open in IMG/M
2162886006\|SwRhRL3b_contig_2752787	All Organisms → cellular organisms → Bacteria → Proteobacteria	907	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101599029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2300	Open in IMG/M
3300002906\|JGI25614J43888_10059680	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300002906\|JGI25614J43888_10071577	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300002907\|JGI25613J43889_10007540	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300002917\|JGI25616J43925_10110852	Not Available	1125	Open in IMG/M
3300005294\|Ga0065705_10154591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1888	Open in IMG/M
3300005295\|Ga0065707_10596385	Not Available	693	Open in IMG/M
3300006605\|Ga0074057_10865947	Not Available	537	Open in IMG/M
3300006844\|Ga0075428_100044210	All Organisms → cellular organisms → Bacteria	4895	Open in IMG/M
3300006844\|Ga0075428_101631380	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006845\|Ga0075421_101003116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	945	Open in IMG/M
3300006846\|Ga0075430_100077229	All Organisms → cellular organisms → Bacteria → Proteobacteria	2791	Open in IMG/M
3300006854\|Ga0075425_100120122	All Organisms → cellular organisms → Bacteria → Proteobacteria	2998	Open in IMG/M
3300006871\|Ga0075434_102657689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	501	Open in IMG/M
3300006876\|Ga0079217_11655107	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300006894\|Ga0079215_11293529	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300006904\|Ga0075424_100811560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	998	Open in IMG/M
3300006914\|Ga0075436_100633306	Not Available	789	Open in IMG/M
3300007004\|Ga0079218_11064726	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300007076\|Ga0075435_100478147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1076	Open in IMG/M
3300007255\|Ga0099791_10126814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1185	Open in IMG/M
3300007255\|Ga0099791_10635917	Not Available	523	Open in IMG/M
3300009157\|Ga0105092_10067198	All Organisms → cellular organisms → Bacteria → Proteobacteria	1939	Open in IMG/M
3300009597\|Ga0105259_1022846	All Organisms → cellular organisms → Bacteria → Proteobacteria	1314	Open in IMG/M
3300009609\|Ga0105347_1008433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3584	Open in IMG/M
3300009609\|Ga0105347_1111782	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300009609\|Ga0105347_1138912	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	943	Open in IMG/M
3300009609\|Ga0105347_1246470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	733	Open in IMG/M
3300009610\|Ga0105340_1000220	All Organisms → cellular organisms → Bacteria → Proteobacteria	28511	Open in IMG/M
3300009610\|Ga0105340_1000463	All Organisms → cellular organisms → Bacteria → Proteobacteria	19692	Open in IMG/M
3300009610\|Ga0105340_1032633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2022	Open in IMG/M
3300009610\|Ga0105340_1111432	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1106	Open in IMG/M
3300009610\|Ga0105340_1200528	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300009678\|Ga0105252_10484234	Not Available	570	Open in IMG/M
3300010047\|Ga0126382_10853016	All Organisms → cellular organisms → Bacteria → Proteobacteria	783	Open in IMG/M
3300010159\|Ga0099796_10094865	Not Available	1114	Open in IMG/M
3300011403\|Ga0137313_1003668	All Organisms → cellular organisms → Bacteria	2956	Open in IMG/M
3300011403\|Ga0137313_1012400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1367	Open in IMG/M
3300011417\|Ga0137326_1028362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1199	Open in IMG/M
3300011417\|Ga0137326_1045394	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	951	Open in IMG/M
3300011420\|Ga0137314_1081574	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300011432\|Ga0137428_1125032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300011434\|Ga0137464_1006136	All Organisms → cellular organisms → Bacteria → Proteobacteria	3116	Open in IMG/M
3300011439\|Ga0137432_1053793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	1214	Open in IMG/M
3300011439\|Ga0137432_1159854	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300011440\|Ga0137433_1054341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1193	Open in IMG/M
3300012015\|Ga0120187_1050859	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300012021\|Ga0120192_10019480	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	1058	Open in IMG/M
3300012021\|Ga0120192_10032375	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	872	Open in IMG/M
3300012038\|Ga0137431_1051748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300012038\|Ga0137431_1086410	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300012038\|Ga0137431_1197697	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	569	Open in IMG/M
3300012041\|Ga0137430_1051362	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300012142\|Ga0137343_1038121	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300012157\|Ga0137353_1088445	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	577	Open in IMG/M
3300012164\|Ga0137352_1035590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	962	Open in IMG/M
3300012172\|Ga0137320_1085650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	671	Open in IMG/M
3300012173\|Ga0137327_1036909	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300012203\|Ga0137399_11081388	Not Available	675	Open in IMG/M
3300012205\|Ga0137362_11110659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	672	Open in IMG/M
3300012225\|Ga0137434_1039131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	694	Open in IMG/M
3300012361\|Ga0137360_11383246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	606	Open in IMG/M
3300012685\|Ga0137397_10559341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	851	Open in IMG/M
3300012685\|Ga0137397_10673773	Not Available	769	Open in IMG/M
3300012918\|Ga0137396_11038263	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012922\|Ga0137394_10780371	Not Available	802	Open in IMG/M
3300012944\|Ga0137410_10126348	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300012944\|Ga0137410_10720341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	833	Open in IMG/M
3300014864\|Ga0180068_1083960	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	533	Open in IMG/M
3300014867\|Ga0180076_1080591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	599	Open in IMG/M
3300014872\|Ga0180087_1065633	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300014876\|Ga0180064_1060358	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	769	Open in IMG/M
3300014880\|Ga0180082_1087925	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300014884\|Ga0180104_1029830	All Organisms → cellular organisms → Bacteria → Proteobacteria	1395	Open in IMG/M
3300014885\|Ga0180063_1069978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1035	Open in IMG/M
3300014965\|Ga0120193_10077295	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300015241\|Ga0137418_11300053	Not Available	507	Open in IMG/M
3300015245\|Ga0137409_10414455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1164	Open in IMG/M
3300015259\|Ga0180085_1039534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1338	Open in IMG/M
3300015371\|Ga0132258_10143517	All Organisms → cellular organisms → Bacteria → Proteobacteria	5717	Open in IMG/M
3300015372\|Ga0132256_100230796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1911	Open in IMG/M
3300018083\|Ga0184628_10021973	All Organisms → cellular organisms → Bacteria → Proteobacteria	3147	Open in IMG/M
3300018422\|Ga0190265_10012402	All Organisms → cellular organisms → Bacteria → Proteobacteria	6482	Open in IMG/M
3300018422\|Ga0190265_10439361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	1409	Open in IMG/M
3300018422\|Ga0190265_11648502	Not Available	752	Open in IMG/M
3300018429\|Ga0190272_10329461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300018432\|Ga0190275_11241918	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300018432\|Ga0190275_11346116	Not Available	790	Open in IMG/M
3300018469\|Ga0190270_12142556	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300018469\|Ga0190270_13376115	Not Available	506	Open in IMG/M
3300020063\|Ga0180118_1068526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	648	Open in IMG/M
3300020067\|Ga0180109_1475007	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300026319\|Ga0209647_1021266	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	4007	Open in IMG/M
3300026320\|Ga0209131_1000968	All Organisms → cellular organisms → Bacteria → Proteobacteria	19802	Open in IMG/M
3300026320\|Ga0209131_1078096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1791	Open in IMG/M
3300027326\|Ga0209731_1052256	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300027362\|Ga0208320_1005303	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300027513\|Ga0208685_1000800	All Organisms → cellular organisms → Bacteria → Proteobacteria	10779	Open in IMG/M
3300027513\|Ga0208685_1143488	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300027533\|Ga0208185_1000278	All Organisms → cellular organisms → Bacteria → Proteobacteria	28449	Open in IMG/M
3300027533\|Ga0208185_1003473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4067	Open in IMG/M
3300027533\|Ga0208185_1019762	All Organisms → cellular organisms → Bacteria → Proteobacteria	1671	Open in IMG/M
3300027533\|Ga0208185_1045838	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1058	Open in IMG/M
3300027573\|Ga0208454_1002348	All Organisms → cellular organisms → Bacteria → Proteobacteria	6536	Open in IMG/M
3300027573\|Ga0208454_1006639	All Organisms → cellular organisms → Bacteria → Proteobacteria	3129	Open in IMG/M
3300027880\|Ga0209481_10025110	All Organisms → cellular organisms → Bacteria → Proteobacteria	2661	Open in IMG/M
3300027903\|Ga0209488_10297794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1204	Open in IMG/M
3300027903\|Ga0209488_10335552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1125	Open in IMG/M
3300027909\|Ga0209382_10996888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	874	Open in IMG/M
3300028809\|Ga0247824_10513817	Not Available	708	Open in IMG/M
3300030620\|Ga0302046_10397104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1132	Open in IMG/M
3300030620\|Ga0302046_10987557	Not Available	670	Open in IMG/M
3300031562\|Ga0310886_11112121	Not Available	510	Open in IMG/M
3300031720\|Ga0307469_10001486	All Organisms → cellular organisms → Bacteria → Proteobacteria	9052	Open in IMG/M
3300031720\|Ga0307469_11343105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	680	Open in IMG/M
3300031720\|Ga0307469_11598897	Not Available	626	Open in IMG/M
3300031740\|Ga0307468_100133835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1556	Open in IMG/M
3300031740\|Ga0307468_100312448	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300031740\|Ga0307468_101724728	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300031820\|Ga0307473_10946808	Not Available	625	Open in IMG/M
3300031820\|Ga0307473_11261173	Not Available	552	Open in IMG/M
3300032157\|Ga0315912_10453136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1018	Open in IMG/M
3300032174\|Ga0307470_10719428	Not Available	763	Open in IMG/M
3300032180\|Ga0307471_100146784	Not Available	2259	Open in IMG/M
3300032205\|Ga0307472_100783803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	868	Open in IMG/M
3300034147\|Ga0364925_0016010	All Organisms → cellular organisms → Bacteria → Proteobacteria	2334	Open in IMG/M
3300034148\|Ga0364927_0092007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	836	Open in IMG/M
3300034149\|Ga0364929_0121131	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300034818\|Ga0373950_0043066	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.31%
Host-Associated	Host-Associated	10.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.62%
Aquatic	Environmental → Aquatic	39.69%
Plants	Host-Associated → Plants	10.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.33%
Sediment	Environmental → Aquatic → Sediment	37.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.92%
Freshwater	Environmental → Aquatic → Freshwater	2.29%
Floodplain	Environmental → Terrestrial → Floodplain	2.29%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	37.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.40%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.29%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.53%
Loam	Environmental → Terrestrial → Soil → Loam	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	37.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.29%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.29%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.29%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	36.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.34%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	3.05%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.29%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.29%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.53%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012142	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT499_2	Environmental	Open in IMG/M
3300012157	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014872	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01017740	2088090014	Soil	VRRGLRDVTYLTHEQQVFVLHQIRNWVFGRHTVFNALNAAWATHGAEAYFWN
SwRhRL3b_0561.00002150	2162886006	Switchgrass Rhizosphere	MNHLDHDQQVFVLYQIRNWLFGRYAVFNALNAAWAAHGAEAYFWN
INPhiseqgaiiFebDRAFT_1015990291	3300000364	Soil	VRRGLRDVTYLTHEQQVFVLHQIRNWVFGRHTVFNALNAAWATHGAEAYFWN*
JGI25614J43888_100596801	3300002906	Grasslands Soil	MSHLTHEQQVFVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN*
JGI25614J43888_100715772	3300002906	Grasslands Soil	VSDLTTEQQIFVLYQIRNWVFGLHDAFAELNSAWAAHGAEAHFWD*
JGI25613J43889_100075402	3300002907	Grasslands Soil	VSHLTHEQQVFVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN*
JGI25616J43925_101108522	3300002917	Grasslands Soil	MSDLTTEQQIFVLYQIRNWVFGHYEAFVTLNAAWSVHGAQAYFWN*
Ga0065705_101545911	3300005294	Switchgrass Rhizosphere	MNHLDHDQQVFVLYQIRNWLFGRYAVFNALNAAWAAHGAEAYFWN*
Ga0065707_105963852	3300005295	Switchgrass Rhizosphere	MMHLTHEQQVFVLHQVRNWIFGHYAVFDALNAAWAAHGAKAYFWN*
Ga0074057_108659473	3300006605	Soil	MDHLTREQQVFVHYQIRNWVFGLYRAFEDLNAVWSAHGAEAYFWS*
Ga0075428_1000442105	3300006844	Populus Rhizosphere	MNHLTREQQHFVLYQIRSWVFGHYAVFKAVNAAWAAHGAEAYFWN*
Ga0075428_1016313802	3300006844	Populus Rhizosphere	MTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNVAWAAHGAEAYFWN*
Ga0075421_1010031162	3300006845	Populus Rhizosphere	MIDLTHEQQVFVQHQIRNWVFGHYPVFVALNTAWAAHGAEAYFWN*
Ga0075430_1000772296	3300006846	Populus Rhizosphere	SRLEAAREQYLACSARWSKRHMTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNVAWAAHGAEAYFWN*
Ga0075425_1001201222	3300006854	Populus Rhizosphere	VHSGRMAYLSAEEQIFVLYQIRNWVFGRYEVFRQLNTAWSLHGAEAYFWN*
Ga0075434_1026576891	3300006871	Populus Rhizosphere	MNNLSAEQQLFVLYQIRNWVFGRYGAFDNLNAAWATHGAEAYFWN*
Ga0079217_116551071	3300006876	Agricultural Soil	MNHLTHEQQVFVLHQIRNWVFGHYAVFNVLNAAWAA
Ga0079215_112935291	3300006894	Agricultural Soil	MNHLTHEQQVFVLHQIRNWVFGHYTVFNALNAAWAAQDAEAYFWN*
Ga0075424_1008115603	3300006904	Populus Rhizosphere	MNNLSAEQQLFVLYQIRNWVFGRYDAFDNLNAAWATHGAEAYFWN*
Ga0075436_1006333062	3300006914	Populus Rhizosphere	VHSAHMAYLSAEEQIFVLYQIRNWVFGRYEVFRQLNTAWSLHGAQAYFWN*
Ga0079218_110647263	3300007004	Agricultural Soil	MNHLTHEQQVFVLHQIRNWVFGHYAVFNVLNAAWAPHGAEAYFWN*
Ga0075435_1004781473	3300007076	Populus Rhizosphere	MAYLSAEEQIFVLYQIRNWVFGRYEVFQQLNTAWSLHGAEAYFWN*
Ga0099791_101268142	3300007255	Vadose Zone Soil	VSDLTSEQQVFVLYQIRNWVFGRFAAFADLNAAWSAHGAEAYFWD*
Ga0099791_106359172	3300007255	Vadose Zone Soil	MDHLSHEQQVFVHHQIRNWVFGRYEVFKALNVAWSAHGAEAYFWN*
Ga0105092_100671981	3300009157	Freshwater Sediment	LTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAYGAEAYFWN*
Ga0105259_10228463	3300009597	Soil	MTHLTHEQQIFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN*
Ga0105347_10084336	3300009609	Soil	MTHLSHEQQLFVLYQVRNWACGRYEVFRALNAAWSAHGAEAYFWN*
Ga0105347_11117823	3300009609	Soil	MAHLTHEQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWEA*
Ga0105347_11389122	3300009609	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAQAYFWN*
Ga0105347_12464703	3300009609	Soil	MTHLSHEQQVFVQYQIRNWVFGHYAVFSALNAAWAAHGAEAYFWN*
Ga0105340_100022034	3300009610	Soil	MAHLTHEQHIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0105340_100046318	3300009610	Soil	MTHLTHEQQTFVLHQIRNWVFGHYAVFSALNAAWSAHGAEAHFWN*
Ga0105340_10326331	3300009610	Soil	MSDLTHEQQIFVQHQIRNWVFGRYEVFKALNAAWCAHGAEAYFWN*
Ga0105340_11114322	3300009610	Soil	MTDLTHEQQIFVLHQMRNWVFGRYTVFNALNAAWAEHGAEAYFWN*
Ga0105340_12005283	3300009610	Soil	MTYLTHEQQIFVLHQMRNWVFGRHTVFNALNAAWATHGAEAYFWN*
Ga0105252_104842342	3300009678	Soil	MSHLTHEQQVFTLHQIRNWVFGHYAVFNALNAAWAARDAEAYFWD*
Ga0126382_108530162	3300010047	Tropical Forest Soil	MDHLTHEQEVFVHCQIRNWVFGLYGAFDELNAAWSRHG
Ga0099796_100948652	3300010159	Vadose Zone Soil	MSHLTHEQQVFVLHQIRNWVFGRYKVFEALNAAWAAHGAEAYFWS*
Ga0137313_10036682	3300011403	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0137313_10124003	3300011403	Soil	MAHLTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWEA*
Ga0137326_10283621	3300011417	Soil	MAHLTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAHGAQAYFWN*
Ga0137326_10453941	3300011417	Soil	MAHLTHEQQVFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN*
Ga0137314_10815742	3300011420	Soil	MAHLTHEQQIFVLYQIRSWAFGHYAVFNALNAAWAAHGAEAYFWEA*
Ga0137428_11250323	3300011432	Soil	MTHLSHEHQLFVLRQIRNWVFGHYAVFNALNAAWSPHGAEAYFWN*
Ga0137464_10061363	3300011434	Soil	MAHLTHEQQVFVLYQIRNWVFGHYAVFNALNTAWAAHGAEAYFWEA*
Ga0137432_10537932	3300011439	Soil	MTHLSHEHQLFVLHQIRNWVFGHYAVFSALNAAWSAHGAEAYFWN*
Ga0137432_11598541	3300011439	Soil	QQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAQAYFWN*
Ga0137433_10543412	3300011440	Soil	MTNLTQEQQTFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0120187_10508592	3300012015	Terrestrial	MTHLTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0120192_100194803	3300012021	Terrestrial	MSHLTHEQQVFVLYQIRNWVLGRHEVFKALNAAWAEHGAEAFFWT*
Ga0120192_100323754	3300012021	Terrestrial	MTHLTHEQQLFVQYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0137431_10517483	3300012038	Soil	MAHLTHEQQIFVLYQIRNWVFGHDAVFNALNAAWAAHGAEAYFWEA*
Ga0137431_10864102	3300012038	Soil	MTHLSHEQQVFVQHQIRNWVFGRYEVFKALNAAWCAHGAEAHFWN*
Ga0137431_11976972	3300012038	Soil	MTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNAAWAAHGAEAYFWN*
Ga0137430_10513623	3300012041	Soil	ETAREQHLACSARRSKQLMTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAQAYFWN*
Ga0137343_10381213	3300012142	Soil	MTHLTREQQLFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN*
Ga0137353_10884452	3300012157	Soil	MTHLTHEQQIFVLYQIRSWVCGRYAVFNALNAAWAAHGAEAYFWN*
Ga0137352_10355903	3300012164	Soil	MTHLTHEQQVFVQHQIRNWVFGHHAVFNALNAAWSAHGAEAYFWN*
Ga0137320_10856502	3300012172	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWEA*
Ga0137327_10369093	3300012173	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVLDVLNAAWAAHGAEAYFWN*
Ga0137399_110813883	3300012203	Vadose Zone Soil	MSHLTHEQQVFIQHQIRNWVFGRYEVFRALNAAWSAHGAEAYFWN*
Ga0137362_111106591	3300012205	Vadose Zone Soil	QQVLVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN*
Ga0137434_10391311	3300012225	Soil	MTHLTHEQQIFVLHQIRNWVFGHYAVFNALNAAWAA
Ga0137360_113832462	3300012361	Vadose Zone Soil	SGVSHLTHEQQVFVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN*
Ga0137397_105593412	3300012685	Vadose Zone Soil	VGHLTVEQQVFVQYQIRNWVFGHYGAFELLNAAWSAHGAEAYFWN*
Ga0137397_106737731	3300012685	Vadose Zone Soil	VSDLTTEQQIFVLYQIRNWVFGLHDAFAELNSAWAAHGAEAYFWD*
Ga0137396_110382631	3300012918	Vadose Zone Soil	QQVIVLHQIRNWMFGRYKVFEALNAAWAAHGAQAYFWS*
Ga0137394_107803711	3300012922	Vadose Zone Soil	MLQHVQEDPSMSYLDREQQVFVYQQIRNWVFGRHGVFKAVNVAWSTHGAEAYFWD*
Ga0137410_101263481	3300012944	Vadose Zone Soil	MSQLTHEQQVFVQHQIRNWVFGRYEVFRALNVAWSAHGAEAYFWN*
Ga0137410_107203413	3300012944	Vadose Zone Soil	MGHLTHEEQVFVLHQIRNWVFGSYEVFKALNAAWSTHGAHAYFWD*
Ga0180068_10839601	3300014864	Soil	CSARWSTRHMTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNAAWAAHGAEAYFWN*
Ga0180076_10805911	3300014867	Soil	MTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNAAWAAHGAEAY
Ga0180087_10656331	3300014872	Soil	ACSARRSTRHMTHLTHEQQIFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN*
Ga0180064_10603583	3300014876	Soil	MTHLTHEQQIFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWEA*
Ga0180082_10879253	3300014880	Soil	MTYLTHEQQIFVLHQMRNWVFGRHTVFNALNVAWAEHGAEAYFWN*
Ga0180104_10298301	3300014884	Soil	TAREQHLACSARWSTRHMTHLTHEQQIFVLYQIRSWAFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0180063_10699782	3300014885	Soil	MTHLSHEHQLFVLHQIRNWVFGHYAVFNALNAAWSPHGAEAYFWN*
Ga0120193_100772952	3300014965	Terrestrial	MTHLTHEQQLFVLHQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN*
Ga0137418_113000532	3300015241	Vadose Zone Soil	MRPTHLPSTLRAVGHLTVEQQVFVQYQIRNWVFGHYGAFELLNAAWSAHGAEAYFWN*
Ga0137409_104144551	3300015245	Vadose Zone Soil	MGHLTHEEQVFVLHQIRNWVFGSYEVFKALNAAWSAHGAQAYFWD*
Ga0180085_10395342	3300015259	Soil	MTHLTHEQQVFVQHQIRNWVFGHYAVFNALNAAWAPHGAEAYFWN*
Ga0132258_101435174	3300015371	Arabidopsis Rhizosphere	MNHLNHEQQVFVLYQIRNWVFGHYAVFNALNAAWAEHGAEAYFWN*
Ga0132256_1002307962	3300015372	Arabidopsis Rhizosphere	MDHLTREQQVFVHYQIRNWVFGLYRAFEDLNAVWSAHGAEAYFWN*
Ga0184628_100219736	3300018083	Groundwater Sediment	VRWGLRHMTYLTHEQQIFVLQQIRNWVCGRHMVFNALNAAWATHGAEAYFWN
Ga0190265_100124025	3300018422	Soil	MVGSQTAAMNDLTHEEQVFVQHQIRNWVFGHYLVFATLNTAWAAYGAEAYFWN
Ga0190265_104393612	3300018422	Soil	MTHLTHEHQRFVLHQIRNWVFGHYAVLNALNAAWAAHGAEAYFWN
Ga0190265_116485022	3300018422	Soil	MTHLTHEQQLFVLHQIRNWVFGHYPVFVALNAAWAAHGAEAYFWN
Ga0190272_103294612	3300018429	Soil	MLDLTTEQQIFVLYQIRNWVFGLHDAFAELNSAWAAHGAEAYFWN
Ga0190275_112419182	3300018432	Soil	MIDLTHEQQVFVQHQIRNWVFGHYPVFVAVNAAWAPHGAEAYFWN
Ga0190275_113461164	3300018432	Soil	MTHLTHEQQLFVLHQIRNWVFGHYAVFKALNAAWAAHGAEAHFWN
Ga0190270_121425562	3300018469	Soil	MTYLTHEHQLFVLHQIRNWVFGHYAVFNALNAAWSAHGAEAYFWN
Ga0190270_133761152	3300018469	Soil	MRGRTHMTDLTHEQQIFVLHQMRNWVFGRYTVFNALNAAWAAH
Ga0180118_10685262	3300020063	Groundwater Sediment	MTHLTHEQQIFVLYQIRSWAFGHYAVFNVLNAAWAAHGAEAYFWN
Ga0180109_14750072	3300020067	Groundwater Sediment	MTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNAAWAAHGAEAHFWN
Ga0209647_10212662	3300026319	Grasslands Soil	MSHLTHEQQVFVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN
Ga0209131_100096818	3300026320	Grasslands Soil	VSHLTHEQQVFVQHQIRNWVFGRYEVFKALNAAWSAHGAEAYFWN
Ga0209131_10780962	3300026320	Grasslands Soil	MSELTPEQQLFVLYQIRNWLLGDYEVFRQFNAAWGPHGAEAYF
Ga0209731_10522562	3300027326	Forest Soil	MTHLTHEQQLFVQHQIRNWVFGHYAVFSALNAAWSAHGAEAYFWN
Ga0208320_10053033	3300027362	Soil	MTHLTHEQQIFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN
Ga0208685_10008006	3300027513	Soil	MTHLSHEQQLFVLYQVRNWACGRYEVFRALNAAWSAHGAEAYFWN
Ga0208685_11434883	3300027513	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAQAYFWN
Ga0208185_10002788	3300027533	Soil	MAHLTHEQHIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN
Ga0208185_10034737	3300027533	Soil	MTHLTHEQQTFVLHQIRNWVFGHYAVFSALNAAWSAHGAEAHFWN
Ga0208185_10197624	3300027533	Soil	MTYLTHEQQIFVLHQMRNWVFGRHTVFNALNAAWATHGAEAYFWN
Ga0208185_10458383	3300027533	Soil	MTDLTHEQQIFVLHQMRNWVFGRYTVFNALNAAWAEHGAEAYFWN
Ga0208454_10023485	3300027573	Soil	MAHLTHEQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWEA
Ga0208454_10066392	3300027573	Soil	MTHLTREQQVFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWN
Ga0209481_100251104	3300027880	Populus Rhizosphere	MNHLTREQQHFVLYQIRSWVFGHYAVFKAVNAAWAAHGAEAYFWN
Ga0209488_102977942	3300027903	Vadose Zone Soil	VSDLTTEQQIFVLYQIRNWVFGLHDAFAELNSAWAAHGAEAHFWD
Ga0209488_103355523	3300027903	Vadose Zone Soil	SRRLRHMSHLTHEQQVFVLHQIRNWMFGRYKVFEALNAAWAAHGAEAYFWS
Ga0209382_109968883	3300027909	Populus Rhizosphere	MTHLTHEQQIFVLYQIRNWVFGHYAVFNVLNVAWAAHGAEAYFWN
Ga0247824_105138173	3300028809	Soil	MTHLTHEQQIFVLHQMRNWVFGRYTVFNALNAAWAEHGAEAYFWN
Ga0302046_103971042	3300030620	Soil	MTHLTHEQQLFVLHQIRNWVFGHYAVFSALNAAWAAHGAEACFWN
Ga0302046_109875572	3300030620	Soil	MNETQPDLTTEQQVFVLYQIRNWVFGHYGAFAQLNRAWSAYGAEAYFWN
Ga0310886_111121211	3300031562	Soil	MTHLTHEQQTFVFHQMRNWVFGRYTVFNALNAAWAAHGAEAYFWN
Ga0307469_1000148615	3300031720	Hardwood Forest Soil	MAYLSAEEQIFVLYQIRNWVFGRYEVFQQLNTAWSLHGAQAYFWN
Ga0307469_113431053	3300031720	Hardwood Forest Soil	VNELSAEQQVFVLYQIRNWVFGHYGAFRLLNDAWAPRGAEAYFWN
Ga0307469_115988972	3300031720	Hardwood Forest Soil	MNHLNQEQQVFVLYQIRNWLFGHYAVFNALNAVWSAHGAEAYFWN
Ga0307468_1001338354	3300031740	Hardwood Forest Soil	MNHLNHEQQVFVLYQIRNWVFGHYAVFDALNAAWAEHGAEAYFWN
Ga0307468_1003124483	3300031740	Hardwood Forest Soil	MNHLDHEQQVFVLHQIRNWLFGHYAVFNALNAAWAAHGAEAYFWN
Ga0307468_1017247282	3300031740	Hardwood Forest Soil	MNHLDHEQQVFVLYQIRNWLFGRFAVFNALNAAWAAQGAEAYFWN
Ga0307473_109468082	3300031820	Hardwood Forest Soil	VHAVQMSHLTHEQQVFVLHQIRNWVFGHYTVFNAFNAA
Ga0307473_112611732	3300031820	Hardwood Forest Soil	MNHLAHEQQVFVLYQIRNWLFGHHAVFNALNAAWAAHGAEAYFWN
Ga0315912_104531361	3300032157	Soil	MMDLTHEQQVFVQHQIRNWVFGHYPVFVALNAAWAAHGAEA
Ga0307470_107194282	3300032174	Hardwood Forest Soil	MSHLTHEQQVFVLHQIRNWVFGHYTVFDALNAAWAAQDAEAYFWN
Ga0307471_1001467843	3300032180	Hardwood Forest Soil	MAYLSAEEQIFVLYQIRNWVFGRYEVFRQLNTAWSLHGAQAYFWN
Ga0307472_1007838031	3300032205	Hardwood Forest Soil	IFVLYQIRNWVFGRYEVFQQLNTAWSLHGAEAYFWN
Ga0364925_0016010_126_263	3300034147	Sediment	MTNLTHEQQIFVLYQIRNWVLGHYAAFNVLNAAWAAHGAEAYFWN
Ga0364927_0092007_373_513	3300034148	Sediment	MAHLTHEQQIFVLYQIRNWVFGHYAVFNALNAAWAAHGAEAYFWEA
Ga0364929_0121131_698_835	3300034149	Sediment	MTYLTHEQQIFVLQQIRNWVCGRHMVFNALNAAWATHGAEAYFWN
Ga0373950_0043066_741_869	3300034818	Rhizosphere Soil	MNHLDHDQQVFVLYQIRNWLFGRYAVFNALNAAWAAHGAEAYF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061825

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences