Metagenome Family F062311

Basic Information
Family ID	F062311
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	42 residues
Representative Sequence	PKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDAR
Number of Associated Samples	12
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	5.38 %
% of genes from short scaffolds (< 2000 bps)	5.38 %
Associated GOLD sequencing projects	12
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Unclassified (97.692 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root (91.538 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (93.077 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.69% β-sheet: 0.00% Coil/Unstructured: 52.31%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00078	RVT_1	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
All Organisms	root	All Organisms	2.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
cellular organisms	root	All Organisms → cellular organisms	1.54 %
Viruses	superkingdom	All Organisms → Viruses	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Sorghinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Sorghum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.69 %
Sorghum bicolor	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300014486\|Ga0182004_10012863	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	6644	Open in IMG/M
3300014486\|Ga0182004_10042221	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	2853	Open in IMG/M
3300014486\|Ga0182004_10108669	All Organisms → Viruses → Predicted Viral	1183	Open in IMG/M
3300014486\|Ga0182004_10115312	Not Available	1119	Open in IMG/M
3300014486\|Ga0182004_10134377	Not Available	971	Open in IMG/M
3300014486\|Ga0182004_10190980	Not Available	713	Open in IMG/M
3300014486\|Ga0182004_10260996	Not Available	556	Open in IMG/M
3300015322\|Ga0182110_1118616	Not Available	510	Open in IMG/M
3300015341\|Ga0182187_1195499	Not Available	507	Open in IMG/M

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	99.23%
Mammals	Host-Associated → Mammals	0.77%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	91.54%
Phyllosphere	Host-Associated → Plants → Phyllosphere	6.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.54%
Digestive System	Host-Associated → Mammals → Digestive System	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	91.54%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	6.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.54%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	91.54%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	6.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.54%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	0.77%

Habitat	Taxonomy	Distribution
Root	Host-Associated → Plants → Roots → Unclassified → Unclassified → Root	91.54%
Miscanthus Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere	6.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.54%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	0.77%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300014486	Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300015279	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015287	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015322	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015323	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015341	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017407	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017443	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017690	Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated	Open in IMG/M

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0182004_1000560212	3300014486	Root	SKKPFWKHMLVLLGEEAQVEARFGLFRDSASLDAR*
Ga0182004_100128638	3300014486	Root	MKPFWTHLLVLLGEEGKGEIQFGLFGDGANLDAR*
Ga0182004_100162331	3300014486	Root	VPNAPLAKKPFWMHLLVLQGDEAQVEAWFGLFRDNAKHDAR*
Ga0182004_100422213	3300014486	Root	PNAPKSKKPFWKHLLVLLGEEAQVEARFGLFGDIANLDAR*
Ga0182004_100424181	3300014486	Root	VPSAPWAKKLFWMHLLVLQDEEAQVEAWFGLFRDSAKHDAR*
Ga0182004_100563801	3300014486	Root	SKKPFWKHLLVLLGEEAQVEAWFSLFRDSANLDAR*
Ga0182004_100703791	3300014486	Root	VLNAPKSKKPFWTQLLVLLGEEAKVEARFSLFGDCAALDAR*
Ga0182004_100774951	3300014486	Root	PKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDAR*
Ga0182004_100798633	3300014486	Root	ICARFAPNAPKSKKPFRKHLLVLLGEEAQVEARFGLIRDSANIDAR*
Ga0182004_100910432	3300014486	Root	WCKICARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFSDSANLDAR*
Ga0182004_100927181	3300014486	Root	CARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSAKLDTR*
Ga0182004_100955361	3300014486	Root	MDLKKKFPPNPPLSKKPFRTHLLVLLGEETQMEARFGLFGDSANLDAR*
Ga0182004_100968752	3300014486	Root	APNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDAI*
Ga0182004_101067691	3300014486	Root	RCNIDAWILPNAPQAKKSFWMHLLVLLGEEAQVEAWFGLFGDSANLDTR*
Ga0182004_101079511	3300014486	Root	IGAQFAPNAPESKKPFWTHLLVLLGEGAQVDTRFGLFGDSGNLDAR*
Ga0182004_101086691	3300014486	Root	KTLAGSYHNAPKYKKPFWKHLLVLLGEEAQVEARFGLFRYSANLDAR*
Ga0182004_101111711	3300014486	Root	FRCKICARFAPNAPKSKKPFWKLLLVLLDEEAQVEARFGLYRDSASLDAR*
Ga0182004_101124161	3300014486	Root	KKPFWTHLLVLLGEEAQVEAWFGLFGDSANLDAR*
Ga0182004_101153121	3300014486	Root	KSKKPFWKHLLVLLGEEAQVEARFGLFGDSANLDAR*
Ga0182004_101158911	3300014486	Root	PNAPKSKKPFWKHLLVLLGEEAQVEARFSLFRDNANLDAR*
Ga0182004_101168871	3300014486	Root	KTPFWMHLMVLLGEEAQVKAWYDLFGDSANFHVR*
Ga0182004_101179461	3300014486	Root	RQYLFRCKICARFAPNAPKSKKPFWKHLLVLLGEEAQVEAQFGLFRDSANLDAR*
Ga0182004_101194941	3300014486	Root	ARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSAHLDAR*
Ga0182004_101250651	3300014486	Root	FRCKICARFAPNAPKSKKPFWKHLLVLLGEEDQVEARFGLFRDSASLDAR*
Ga0182004_101262041	3300014486	Root	NVPYANKPFWTHLMVLLGEEAQMEARFSIIGDSANLDAR*
Ga0182004_101299221	3300014486	Root	PNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDTR*
Ga0182004_101343771	3300014486	Root	MGAWFASNAPLAKKPFWTHPMVLLGEGVQVEAWFGPFGDSANL*
Ga0182004_101387411	3300014486	Root	RCKICARFVPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFSDSANFDVR*
Ga0182004_101412931	3300014486	Root	HLMDHKKPFWRHLVVLLGEEAQVKAWFSLFRDSSNLDAR*
Ga0182004_101479112	3300014486	Root	SKKPFWTHLLVLLGEGAQVDAWFGLFGDSANLDAR*
Ga0182004_101479821	3300014486	Root	GAQFAPKSKKPFWTHLLVLLGEGAQVDARFSLFGDSANLNAR*
Ga0182004_101486241	3300014486	Root	AQFAPNGPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANPDAR*
Ga0182004_101486561	3300014486	Root	RFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDTT*
Ga0182004_101492581	3300014486	Root	PKSKKPFWKHLLVLLGEEAQVEARFGLFRDSVNLDAR*
Ga0182004_101507191	3300014486	Root	SKKPFWKHLLVLLGEEAQVEARFDLFRDSANLDAR*
Ga0182004_101520611	3300014486	Root	APKSKKPLWKHLLVLLGEEAQVEARFGLFRDSANLDAR*
Ga0182004_101525261	3300014486	Root	CARFAPNAPKSKKPFWKHLLVLLGEEPQVEARFGLFRDSASLDAR*
Ga0182004_101530792	3300014486	Root	FAPNAPKSKKPFWMHLLVLLGEEAQVEARFGLFRDSANLDA*
Ga0182004_101531571	3300014486	Root	GWHLMDHKKPFWRHLVVLLGEEAQVKARFSLFRDSSNLDAK*
Ga0182004_101545531	3300014486	Root	KKPFWTHLLVLLGEGAQVDARFGLFGDSANLDAR*
Ga0182004_101563121	3300014486	Root	RCKKCARFAPNAPKAKKPFWMHLLVLLGEEAQVEAQFGLFRDNANLDER*
Ga0182004_101594391	3300014486	Root	ARFAPNAQKSKKPFSKHLLVLLGEEAQVEARLCLFRDSANLDAR*
Ga0182004_101600171	3300014486	Root	KKPLWKHLLVLLGEEAQVEAWFGLFRDSANLDAR*
Ga0182004_101610461	3300014486	Root	MPNAPYSKKQFWTHPMVLLGEGAQVNARFGLFGDSANLDAR*
Ga0182004_101639741	3300014486	Root	CARFAPNAPKSKKPLWKHLLVLLGEEAQVEAWFGLFRDSANIDAR*
Ga0182004_101681241	3300014486	Root	PKSKKPFWKHLLVLLGQEAQVEARFGLFRDSANLDAR*
Ga0182004_101702581	3300014486	Root	RCKICARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRNSANLDAR*
Ga0182004_101738201	3300014486	Root	MIDAWFAPNAPYSKKTFWTHSMVLLGEEAQVEAWFGLFGDS
Ga0182004_101771831	3300014486	Root	CTWFANNAPKSKKPFWKYMLVLLGEEAQVEAWFGLFGDSANMDAR*
Ga0182004_101778791	3300014486	Root	ARFAPNAPKSKKPFLKHMLVLLGEEAQVEARFGLSRDMVY*
Ga0182004_101791391	3300014486	Root	SKKPFWKQVLVLLGEEAQVEARFGLFRDSANLDAR*
Ga0182004_101821671	3300014486	Root	ICARFAPNAPKSKKPFWKHLLVLLREEAQVEARFGLFRDSANPDAR*
Ga0182004_101826712	3300014486	Root	VPNAPKSKKPFWKHLLVLLGEEAQVEAGFGLFRDSANLDAR*
Ga0182004_101836881	3300014486	Root	KKPFWTHLLVLLGEGAQVDARFGLFGDSANLNAR*
Ga0182004_101841561	3300014486	Root	TKPFWTHLLVLLGEGAQVDARFDLFGDSANLDAR*
Ga0182004_101842291	3300014486	Root	SKKPFWTHLLVLLGEGAQVDARFGLFGDSVNLDAR*
Ga0182004_101865031	3300014486	Root	IGAQFAPNAPLSKKPFWTHLLVLLGEGAQVDARFGLFGDSANLDAR*
Ga0182004_101871151	3300014486	Root	KSKKPFWKHLFVLQGEEAQVEARFGLFRDSANLDAR*
Ga0182004_101877101	3300014486	Root	MIGAPFVPNAPKSKKQFWMLYLVLLGEEAQVEAWFGQFGDSANPYAR*
Ga0182004_101891971	3300014486	Root	ARFAPNAPKSKKPFWKHLLVLLGEEAQMEARFGLFRDSANPDAR*
Ga0182004_101909803	3300014486	Root	KKPFLTHLFVLLDEEAQVEARFSLFGDSANLDAR*
Ga0182004_101932721	3300014486	Root	APKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANFDAR*
Ga0182004_101947352	3300014486	Root	ARFAPNAPKSKKPFWKLLLVLLDEEAQVEARFGLFRDSASLDAR*
Ga0182004_101958591	3300014486	Root	KKPIWTHLLVLLGEGAQVDARFGLFGDSANLDAK*
Ga0182004_101965351	3300014486	Root	ARKPLWKHLIIILGEEAQVEGQFDVFGDSANLDER*
Ga0182004_101974141	3300014486	Root	CKICARFAPNAPKSKKLFWKHLLVLLGGEAEVEARFGLFRDSANLDAR*
Ga0182004_101991901	3300014486	Root	PKSKKPFWKHLLVLLGEEAQMEARFGLFRDSANLDAR*
Ga0182004_102019271	3300014486	Root	RCNIGAQFALYAPKSKKPFWTHLLVLLGGEAKVEARFSLFADCANLDAR*
Ga0182004_102031191	3300014486	Root	WKSIWTHLMELLAEEAQVEAWFGLFGDSANLDAR*
Ga0182004_102063451	3300014486	Root	LFRCKICARFAPNAPKSKKPFWKHLLVLLGEEAQVEARLGLFRDSANIDAR*
Ga0182004_102079921	3300014486	Root	ARFAPNALKFKKPFWKHLLVLLGEEAQVEARFGLFRDSANRDAR*
Ga0182004_102085251	3300014486	Root	SKKPFWTHLLVLLGEGAQVDARFGLFGDSANLDSR*
Ga0182004_102085921	3300014486	Root	KKPFWTHLLVLLGEEAKVEARFSLFRDCANLNAR*
Ga0182004_102090911	3300014486	Root	APKSKKPFWKHLLVLLGEEAQVEAGFGLFRDSANLDAR*
Ga0182004_102125421	3300014486	Root	RCKICARFVPNATKSKKPFWKHLLVLLGEEAQVEARLGLFIDSASLDAR*
Ga0182004_102171121	3300014486	Root	ARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFDLFRDSANLYAR*
Ga0182004_102214791	3300014486	Root	FAPNAPKSKKPLWKHLLVLLGEEAQVEARFGLFRDSANLDGR*
Ga0182004_102262101	3300014486	Root	WFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDTR*
Ga0182004_102274071	3300014486	Root	HGWHLMDHKKPFWRHLVVLLGEEAQVKAWFSLFRDSSNLDAK*
Ga0182004_102277861	3300014486	Root	PKSKKPFWKHLLVLLGEEAQVEARFGLFRESANLDAR*
Ga0182004_102333661	3300014486	Root	CARFAPNAPKSKKPFWKQLLVLLGEEAQVEARFGLFRDSANLDAR*
Ga0182004_102363631	3300014486	Root	MHRSHLMHPQSKKPF*THLLVLLGEEAQVEARFVLFQDSAN
Ga0182004_102391442	3300014486	Root	NAPKSQKPFWKHLLVLLGEEAQVEARFGLFRDSANLDGR*
Ga0182004_102402421	3300014486	Root	FAPNAPKSKKPFWKHLLVLLGEEAQVEAQFGLFRDSANLDTR*
Ga0182004_102424091	3300014486	Root	ARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSAILYAR*
Ga0182004_102502231	3300014486	Root	MICARFAPNAPKSKKLFWKHLLVLLGEEAQVEARFGLFRDSVNLDAI*
Ga0182004_102507321	3300014486	Root	APKSKKPFCKHMLVLLGEEAQVEARFGLFGDSANLDAR*
Ga0182004_102514431	3300014486	Root	NAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDAK*
Ga0182004_102518851	3300014486	Root	APKSKKPFWKHLLVLLGEVAQVEARFGLFRDSANLDAR*
Ga0182004_102559951	3300014486	Root	SKKPFWTHLLVLLGEEAKVEARFSLFGDCAALDAR*
Ga0182004_102575161	3300014486	Root	CARFAPNAPKSKKPFWKHLLVLLGEEPQVEARFGLFRDSANLDAT*
Ga0182004_102593521	3300014486	Root	KSKKPFWKHLLVLQGEEAQVEARFGLFRDSANLDAR*
Ga0182004_102609961	3300014486	Root	WFASNAPLAKKPFWTHPMVLLGEGAQVEAWFGLFGDSANL*
Ga0182004_102632251	3300014486	Root	SKKPFWKHLLVLLGEEAQVEARFGLFRDSANLDAI*
Ga0182004_102644981	3300014486	Root	FAPNAPKSKKPFWKHLMVLLVEEAQVEAVFSLFRDSANLDAR*
Ga0182004_102648651	3300014486	Root	APKSEKPFWKPLLLLLGEEAQVEAHFGLFRYSANLDAR*
Ga0182004_102654362	3300014486	Root	FAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLFRDSANLVAR*
Ga0182004_102696891	3300014486	Root	VLVLVQDIAQFVPNAPQAKKPFWTHLLVLLGEEAQVEARFGLFGDNANLDAR*
Ga0182004_102708442	3300014486	Root	APKSKKPFWKHLLVRLGEEAQLEARFGLFRDSANLDAR*
Ga0182004_102710881	3300014486	Root	ICARFAPNAPMSKKPFWKHLLVLLGEEAQVEARFGLFRDSASLDAR*
Ga0182004_102722041	3300014486	Root	SKKPFWKHLLVLLGEEAQVEAPFGLFRDSANLDAR*
Ga0182004_102724801	3300014486	Root	KIFARFAPNAPKSEKPFWKPRLVLLGEEAQVEARFGLFRDSTNLDVR*
Ga0182004_102741421	3300014486	Root	CKICARFAPNAPKSKKQFWKHLLVLLGEEAQVEARFGLFRDSASLDGR*
Ga0182004_102779491	3300014486	Root	VPNEAWAKKPFWTHLLVLLGEEAQVEAWFGLFGDSANLDAR*
Ga0182004_102792072	3300014486	Root	SKKPFWRHLLVLLGEEAQVEAWFGLFRDSANLDAR*
Ga0182004_102795021	3300014486	Root	VPNAPESKKPFLTHLSVLLDEEAQVEARFDLFGDSANLDA*
Ga0182004_102817131	3300014486	Root	AQFAPNAPWSKKPFWTHLLVLLGEGAQVDAQFSLFGDSANLYAR*
Ga0182004_102840791	3300014486	Root	PNAPKSKKPFWKHLSVLLGEEALVEARFCLFRDSANLDAR*
Ga0182004_102867721	3300014486	Root	FAPNAPKSKKLFWKHLLVLLREEAQVEARFSLFRDSADLDAI*
Ga0182004_102874551	3300014486	Root	MGAQFALNAPKSKKPFWTHLLVLLGEEAEVEARFSLFGDCANLDAR*
Ga0182004_102878821	3300014486	Root	FRCKICARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGLLIDSANLDAS*
Ga0182004_102905141	3300014486	Root	KKPFWKHLLVLLGEEAQVEARFGLFRDSANFDAR*
Ga0182004_102933201	3300014486	Root	KSKKPFWKHLLVRLGEEAQLEARFGLFRDSANLDAR*
Ga0182004_102945471	3300014486	Root	KKLFWKHLLVLLGEEAQVVARFGLFRDSANLNAR*
Ga0182004_102966831	3300014486	Root	YKKPFWTHLLVLLGEGTQVVARFGLFGDSANLDAT*
Ga0182004_102982201	3300014486	Root	FPPNAPLSKKPFWTHLLVLLGEGSQVDARFGLFGDSANLDAI*
Ga0182004_103005621	3300014486	Root	ICALFAPNAPKSKKPFWKHLSVLLGEEALVEARFCLFRDSANLDAR*
Ga0182004_103010671	3300014486	Root	ATKSKKPFWTHLLVLLGEEAKVEVRFSLFRDCANLNAI*
Ga0182004_103015671	3300014486	Root	ARFAPNAPKSKKRFWKPLLVPLGEEAQVEARFGLFRDSASLDAR*
Ga0182007_103541161	3300015262	Rhizosphere	CARFAPNAPKSKKPFWKHLLVLLGEEAQVEARFGRFRDSANLDAR*
Ga0182005_10769811	3300015265	Rhizosphere	PNAPKSKKPFWRHLLVLLGEEAQVEAWFGLFRDSANLDAR*
Ga0182174_10278161	3300015279	Miscanthus Phyllosphere	GQKLFWTRPMVLLGDEAQVEARFGLFRDSANLDAR*
Ga0182171_10587661	3300015287	Miscanthus Phyllosphere	GQKLFWTRPMVLLGDEAQVEARFGPFRDSANLDAR*
Ga0182110_11186161	3300015322	Miscanthus Phyllosphere	DSANLDADWCMVCAERTLGSEIVLTRPIELLGDEAQVEARFGPFGDNANLASR*
Ga0182129_10165702	3300015323	Miscanthus Phyllosphere	CMVCAECTIGQKLFWTYPIELLGDEAQVEACFGPFGDIANLDAR*
Ga0182187_11954991	3300015341	Miscanthus Phyllosphere	TIGSKTFWTHPMVLLGDEAQVEARFSLFGDIANPDAK*
Ga0182220_10275851	3300017407	Miscanthus Phyllosphere	AQKPFWTHPMVPLGDEAQVQARFGLFRDSANLDAR
Ga0182193_11753951	3300017443	Miscanthus Phyllosphere	KIAARFAPNAPKARKSVWMHLMVLLGDTAEVEARFSLFRGSVNLDARWVHYMR
Ga0182223_10697331	3300017690	Miscanthus Phyllosphere	AHKSFWTRPMVLLGDKVQVEAYFGLFEDSANLDAR
Ga0326514_110858881	3300031853	Rumen	PKSKKPFWKHLLVLLGEEAQEEARLDRFGDSANLDAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062311

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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