Metagenome / Metatranscriptome Family F062533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	62 residues
Representative Sequence	IAIGSGPELTGLKIEFQIRDEKVVVESPMGVNIPAGTPHSQRIIEGSGHFFNFVPKSNYNDGLV
Number of Associated Samples	117
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.77 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.385 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.52% β-sheet: 20.65% Coil/Unstructured: 72.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF01625	PMSR	26.15
PF09084	NMT1	7.69
PF13417	GST_N_3	6.92
PF13410	GST_C_2	6.15
PF00903	Glyoxalase	2.31
PF07854	DUF1646	2.31
PF08238	Sel1	1.54
PF00043	GST_C	1.54
PF14376	Haem_bd	1.54
PF13231	PMT_2	1.54
PF03401	TctC	0.77
PF02358	Trehalose_PPase	0.77
PF00293	NUDIX	0.77
PF13485	Peptidase_MA_2	0.77
PF13701	DDE_Tnp_1_4	0.77
PF13090	PP_kinase_C	0.77
PF04909	Amidohydro_2	0.77
PF02274	ADI	0.77
PF02012	BNR	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	26.15
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.69
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	7.69
COG4756	Predicted cation transporter	General function prediction only [R]	2.31
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	1.54
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	1.54
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	0.77
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.77
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	0.77
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.77
COG4874	Uncharacterized conserved protein	Function unknown [S]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.77 %
Unclassified	root	N/A	9.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.77 %
Unclassified	root	N/A	9.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	9.23 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.77 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.38 %
Unclassified	root	N/A	9.23 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.62 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.54 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.77 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	9.23 %
Unclassified	root	N/A	9.23 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.54 %
Rhizaria	clade	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria	0.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.77 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.77 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9.23 %
Unclassified	root	N/A	9.23 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	4.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.08 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.77 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.77 %
Cercozoa	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.23 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	8.46 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	4.62 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.08 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Chlorarachniophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae	0.77 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.77 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.77 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.15 %
Candidatus Yonathbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria	4.62 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	3.08 %
Deltaproteobacteria bacterium GWA2_57_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	2.31 %
Amorphochlora	genus	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Amorphochlora	0.77 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.77 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.15 %
Candidatus Yonathbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	4.62 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3.08 %
Deltaproteobacteria bacterium GWA2_57_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	2.31 %
Amorphochlora amoebiformis	species	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Amorphochlora → Amorphochlora amoebiformis	0.77 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.77 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.23 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6.15 %
Candidatus Yonathbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	4.62 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3.08 %
Deltaproteobacteria bacterium GWA2_57_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	2.31 %
Syntrophaceae bacterium PtaB.Bin038	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	0.77 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	0.77 %
Amorphochlora amoebiformis	species	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Amorphochlora → Amorphochlora amoebiformis	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.77 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003995\|Ga0055438_10191019	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300004013\|Ga0055465_10168681	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300004070\|Ga0055488_10181990	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300004071\|Ga0055486_10138277	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300004480\|Ga0062592_101422292	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300004803\|Ga0058862_11846399	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300005166\|Ga0066674_10059232	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300005178\|Ga0066688_10839374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	571	Open in IMG/M
3300005213\|Ga0068998_10187362	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005294\|Ga0065705_11083118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300005331\|Ga0070670_101949882	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005332\|Ga0066388_107269478	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005332\|Ga0066388_107760646	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005340\|Ga0070689_100877199	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005341\|Ga0070691_10988303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300005353\|Ga0070669_100278953	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300005366\|Ga0070659_100346244	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300005446\|Ga0066686_11013052	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300005450\|Ga0066682_10316449	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300005458\|Ga0070681_10885093	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300005468\|Ga0070707_100695404	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005558\|Ga0066698_10548959	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300005616\|Ga0068852_101278782	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005836\|Ga0074470_10951451	All Organisms → cellular organisms → Bacteria → Proteobacteria	3857	Open in IMG/M
3300006032\|Ga0066696_10066004	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300006034\|Ga0066656_10029595	All Organisms → cellular organisms → Bacteria	3030	Open in IMG/M
3300006844\|Ga0075428_101411553	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300006847\|Ga0075431_101821806	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300006852\|Ga0075433_10033461	All Organisms → cellular organisms → Bacteria	4407	Open in IMG/M
3300006852\|Ga0075433_10364688	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300006871\|Ga0075434_100412098	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300006880\|Ga0075429_100184880	All Organisms → cellular organisms → Bacteria	1826	Open in IMG/M
3300006880\|Ga0075429_101161005	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300006904\|Ga0075424_102158631	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300007004\|Ga0079218_12798052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	584	Open in IMG/M
3300009094\|Ga0111539_11839938	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	702	Open in IMG/M
3300009100\|Ga0075418_11718106	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	682	Open in IMG/M
3300009147\|Ga0114129_10202855	All Organisms → cellular organisms → Bacteria	2685	Open in IMG/M
3300009147\|Ga0114129_11048505	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300009147\|Ga0114129_11948096	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300009174\|Ga0105241_10681781	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300009553\|Ga0105249_10106792	All Organisms → cellular organisms → Bacteria	2642	Open in IMG/M
3300010048\|Ga0126373_10988781	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300010358\|Ga0126370_10315884	Not Available	1246	Open in IMG/M
3300010359\|Ga0126376_12063434	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300010366\|Ga0126379_12603876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	603	Open in IMG/M
3300010373\|Ga0134128_10730490	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300010373\|Ga0134128_11723242	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300010376\|Ga0126381_104189282	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300010376\|Ga0126381_104314056	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300010391\|Ga0136847_10931520	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300010400\|Ga0134122_10808031	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300010401\|Ga0134121_10873289	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300010403\|Ga0134123_10606558	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300010403\|Ga0134123_11905515	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300011397\|Ga0137444_1077210	Not Available	528	Open in IMG/M
3300012034\|Ga0137453_1060691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
3300012137\|Ga0137346_1031383	Not Available	690	Open in IMG/M
3300012164\|Ga0137352_1032234	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012208\|Ga0137376_11006840	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300012226\|Ga0137447_1021370	Not Available	998	Open in IMG/M
3300012357\|Ga0137384_10129222	All Organisms → cellular organisms → Bacteria	2114	Open in IMG/M
3300012532\|Ga0137373_10736932	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	732	Open in IMG/M
3300012908\|Ga0157286_10317537	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300012923\|Ga0137359_11726075	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012930\|Ga0137407_10815524	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	881	Open in IMG/M
3300012930\|Ga0137407_11126021	Not Available	744	Open in IMG/M
3300012955\|Ga0164298_10985759	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012971\|Ga0126369_11182996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	854	Open in IMG/M
3300012977\|Ga0134087_10154838	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300013297\|Ga0157378_12973663	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300014301\|Ga0075323_1017149	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300014324\|Ga0075352_1062751	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300014870\|Ga0180080_1054402	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300014872\|Ga0180087_1005690	All Organisms → cellular organisms → Bacteria	2066	Open in IMG/M
3300014872\|Ga0180087_1096172	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300015077\|Ga0173483_10891576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
3300015254\|Ga0180089_1050353	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300015262\|Ga0182007_10074021	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300015373\|Ga0132257_104334020	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Cercozoa → Chlorarachniophyceae → Amorphochlora → Amorphochlora amoebiformis	516	Open in IMG/M
3300015374\|Ga0132255_100192984	All Organisms → cellular organisms → Bacteria → Proteobacteria	2875	Open in IMG/M
3300015374\|Ga0132255_103984204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	627	Open in IMG/M
3300018073\|Ga0184624_10008511	All Organisms → cellular organisms → Bacteria	3476	Open in IMG/M
3300018077\|Ga0184633_10056419	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300018077\|Ga0184633_10345371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	752	Open in IMG/M
3300018084\|Ga0184629_10277810	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300018422\|Ga0190265_10999297	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300018422\|Ga0190265_13253760	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300018431\|Ga0066655_10910608	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300019360\|Ga0187894_10420567	Not Available	591	Open in IMG/M
3300020078\|Ga0206352_10066469	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300021073\|Ga0210378_10262490	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300021081\|Ga0210379_10379220	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300021178\|Ga0210408_10261951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1378	Open in IMG/M
3300022534\|Ga0224452_1054815	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300022694\|Ga0222623_10111180	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300025159\|Ga0209619_10158214	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	1302	Open in IMG/M
3300025160\|Ga0209109_10145856	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_57_13	1195	Open in IMG/M
3300025165\|Ga0209108_10027384	All Organisms → cellular organisms → Bacteria	3215	Open in IMG/M
3300025174\|Ga0209324_10793429	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300025313\|Ga0209431_10757448	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300025314\|Ga0209323_10381521	Not Available	856	Open in IMG/M
3300025322\|Ga0209641_10537655	Not Available	823	Open in IMG/M
3300025885\|Ga0207653_10207611	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300025912\|Ga0207707_10218142	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300025934\|Ga0207686_11731150	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300026020\|Ga0208531_1005184	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300026088\|Ga0207641_12009678	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026296\|Ga0209235_1259216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	535	Open in IMG/M
3300026325\|Ga0209152_10305104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	597	Open in IMG/M
3300027722\|Ga0209819_10153786	Not Available	804	Open in IMG/M
3300027862\|Ga0209701_10190766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1227	Open in IMG/M
3300027873\|Ga0209814_10243926	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	779	Open in IMG/M
3300027880\|Ga0209481_10335858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	770	Open in IMG/M
3300030006\|Ga0299907_10475399	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300031114\|Ga0308187_10336068	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031538\|Ga0310888_10369081	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300031548\|Ga0307408_100187486	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300031719\|Ga0306917_10572765	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300031740\|Ga0307468_101997194	Not Available	555	Open in IMG/M
3300031833\|Ga0310917_10228793	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1249	Open in IMG/M
3300031852\|Ga0307410_11215578	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031911\|Ga0307412_10359392	Not Available	1172	Open in IMG/M
3300031940\|Ga0310901_10522821	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300031947\|Ga0310909_10636030	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yonathbacteria → Candidatus Yonathbacteria bacterium	890	Open in IMG/M
3300032059\|Ga0318533_11405171	Not Available	510	Open in IMG/M
3300032075\|Ga0310890_11276645	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	600	Open in IMG/M
3300032126\|Ga0307415_100299030	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1332	Open in IMG/M
3300032180\|Ga0307471_100431088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1453	Open in IMG/M
3300032261\|Ga0306920_101457303	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.62%
Host-Associated	Host-Associated	25.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.38%
Plants	Host-Associated → Plants	24.62%
Aquatic	Environmental → Aquatic	19.23%
Human	Host-Associated → Human	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.77%
Sediment	Environmental → Aquatic → Sediment	12.31%
Marine	Environmental → Aquatic → Marine	3.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.85%
Freshwater	Environmental → Aquatic → Freshwater	3.08%
Cave	Environmental → Terrestrial → Cave	0.77%
Digestive System	Host-Associated → Human → Digestive System	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.31%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.54%
Lake	Environmental → Aquatic → Freshwater → Lake	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.62%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.54%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.54%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.77%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.54%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.38%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.62%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.31%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.54%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.54%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.77%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.77%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300004071	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011397	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT319_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012137	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014301	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300014872	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015254	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10D	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026020	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055438_101910192	3300003995	Natural And Restored Wetlands	AIGTGPELTGLKIEFQIRDEKVVVESPVGVNIPAGTPHTQRIIEGSGQFFNFVPKSNYNDGLM*
Ga0055465_101686811	3300004013	Natural And Restored Wetlands	EFVIRDETLVAESPVGVNIPAGTPHCQRIIEGSGHFFNFVPKSSYNDSLV*
Ga0055488_101819902	3300004070	Natural And Restored Wetlands	IEFVIRDETLVAESPVGVNIPAGTPHCQRIIAGSGHFFNFVPKGSYNDSLV*
Ga0055486_101382772	3300004071	Natural And Restored Wetlands	HIAIGNGPDLTGLKVAFQVCDEKVVVESPVGVNIPAGTPHSQRIIDGSGHFFNFVPKNNYNDGLM*
Ga0062592_1014222922	3300004480	Soil	TQHIAIGTGPELTGLKIEFQVRDDKMVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS*
Ga0058862_118463992	3300004803	Host-Associated	TGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLMS*
Ga0066674_100592321	3300005166	Soil	DTQHIAIGNGPELTGLKIEFQIGDEKVAVESPVGVNIPAGTRHSQRIIEGSGHFFNFVPKSNYNDSLV*
Ga0066688_108393741	3300005178	Soil	PGLTGLTIEFVIGDEKVICESPLGVHIPASVAHSQRIVGGSGHFFNFVPKSNYNDSLV*
Ga0068998_101873621	3300005213	Natural And Restored Wetlands	DLTGLKIEFQIGDEKVVVESPVGVNIPAGTPHTQRIVEGSGHFFNFVPKSHYNDGLM*
Ga0065705_110831182	3300005294	Switchgrass Rhizosphere	DMHSHNCDTQHIAIGTGPKLAGLKIEFQIRDEKVVVESPVGVNIPAGTPHTQRIVDGSGHFFNFVPKSNYNDGLM*
Ga0070670_1019498821	3300005331	Switchgrass Rhizosphere	HNCDTQHIAIGTGAELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS*
Ga0066388_1072694781	3300005332	Tropical Forest Soil	ITIGTGPELTGLTVEFIIRDQKIIAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGLMS*
Ga0066388_1077606462	3300005332	Tropical Forest Soil	ITIGTGPELTGLTVEFIIRDQKIIAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSFYNDGLL*
Ga0070689_1008771991	3300005340	Switchgrass Rhizosphere	GPELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS
Ga0070691_109883031	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	HNCDTQHIAIGIGPELTGLKIEFQIRDEKVVVVSPMGVNIPAGTPHSQRIIDGSGHFFNFVPKSSYNDGLA*
Ga0070669_1002789533	3300005353	Switchgrass Rhizosphere	GTGAELTGLKIEFQIGDDKIVVESPVGVNIPAGTPHSQRLIDGAGHFFNFVPKSFYNDGLMS*
Ga0070659_1003462442	3300005366	Corn Rhizosphere	NCDTQHIAIGTGPELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS*
Ga0066686_110130521	3300005446	Soil	CDTYHIAIGPGPDLTGLTIEFIIGDEEVVTESPVGVHIPAGIPHSQRIVRGSGHFFNFVPKSNYNDSLVQ*
Ga0066682_103164491	3300005450	Soil	LKIEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKRDYNDGLA*
Ga0070681_108850931	3300005458	Corn Rhizosphere	LTGLKIEFQIRDEKVVVESPMGVNIPAGTPHSQRIIDGSGHFFNFVPKSSYNDGLA*
Ga0070707_1006954042	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	SIGTGPDLTGLKVEFVVGDEKVVAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGLM*
Ga0066698_105489591	3300005558	Soil	VGAGPELTGLKIEFQIRDEKVIVESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKGNYNDGLAS*
Ga0068852_1012787821	3300005616	Corn Rhizosphere	HIAIGTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLMS*
Ga0074470_109514511	3300005836	Sediment (Intertidal)	KIEFQIRDEKVIVESPMGVNIPAGTPHSQRIIEGTGHFFNFVPKSFYNDGLI*
Ga0066696_100660043	3300006032	Soil	GLTIEFAIGDEKVICESPLGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDSLGQ*
Ga0066656_100295954	3300006034	Soil	CDTQHIAIGSGSELTGLKVEFQIRDETVVAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDSLVQ*
Ga0075428_1014115532	3300006844	Populus Rhizosphere	HNCDTQHIAIGSGPELTGLKIEFVIRDEKVVVESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDSLV*
Ga0075431_1018218063	3300006847	Populus Rhizosphere	HNCDTQHIAIGTGPELTGLKIEFQIRDEKVVVESPVGVNIPAGTPHSQRIVDGSGHFFNFVPKSNYNDGLL*
Ga0075433_100334611	3300006852	Populus Rhizosphere	KTEFVIDGERTIVESPVGVHIPAGMPHSQRMVEGTGHFFNFVPKGNYNDSLVQ*
Ga0075433_103646881	3300006852	Populus Rhizosphere	EFQIRDEKVVVESPVGVHIPAGTPHMQRIIEGSGHFFNFVPKRDYNDGLA*
Ga0075434_1004120981	3300006871	Populus Rhizosphere	TGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHSQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0075429_1001848803	3300006880	Populus Rhizosphere	EFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKSNYNDGLA*
Ga0075429_1011610052	3300006880	Populus Rhizosphere	NCDTQHIAIGTGPELTGLKIEFQIRDERVVVESPVGVNIPAGTPHSQRIVDGSGHFFNFVPKSNYNDGLM*
Ga0075424_1021586312	3300006904	Populus Rhizosphere	IGTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0079218_127980521	3300007004	Agricultural Soil	NCDTYHIVIGAGPELSGLKTEFVIGDEKAVVESPVGVHIPAGTSHSQRIVAGSGHFFNFVPKGNYNDSLI*
Ga0111539_118399382	3300009094	Populus Rhizosphere	AIGTGPELTGLKIEFVIGDEKVVVESPVGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDGLV*
Ga0075418_117181061	3300009100	Populus Rhizosphere	EFQIRDEKVIVESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKDNYNDGLAS*
Ga0114129_102028551	3300009147	Populus Rhizosphere	HIAIGTGPEFSGLKIEFQIRDEKVVVESPVGVHIPAGTPHMQRIIEGSGHFFNFVPKRDYNDGLA*
Ga0114129_110485051	3300009147	Populus Rhizosphere	HIAIGTGPEFSGLKIEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKSNYNEGLI*
Ga0114129_119480962	3300009147	Populus Rhizosphere	QANYVDLHSHNCDTQHIAIGTGPELTGLKIEFQIRDEKVVVESPVGVTIPAGTPHSQRIVDGSGHFFNFVPKSNYNDGLM*
Ga0105241_106817812	3300009174	Corn Rhizosphere	CDTQHIAIGTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLMS*
Ga0105249_101067921	3300009553	Switchgrass Rhizosphere	GTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0126373_109887811	3300010048	Tropical Forest Soil	EFIIRDQKIIAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSFYNDGLL*
Ga0126370_103158841	3300010358	Tropical Forest Soil	GLKIEFVIGDEKVVAESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKSNYNDSLV*
Ga0126376_120634341	3300010359	Tropical Forest Soil	QANYVDKHMHNCDTQHIAIGTGPDLTGLKIEFVIGDEKVVVESPVGVNIPAGTPHCQRIIEGSGHFFNFVPNSNYNDSLI*
Ga0126379_126038762	3300010366	Tropical Forest Soil	GPDLTGLKIEFVIGDEKVVAESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKSNYNDSLV*
Ga0134128_107304901	3300010373	Terrestrial Soil	KIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLIS*
Ga0134128_117232421	3300010373	Terrestrial Soil	IAIGTGPKLGGLKIEFTIDNETTVVESPVGVNIPAGTAHTQRIIEGTGHFFNFVPKGNYNDGLM*
Ga0126381_1041892822	3300010376	Tropical Forest Soil	HITIGTGPELTGLTVEFIIRDQKIIAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSFYNDGLL*
Ga0126381_1043140561	3300010376	Tropical Forest Soil	HITIGTGPELTGLTVEFIIRDQKIIAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGLMS*
Ga0136847_109315202	3300010391	Freshwater Sediment	NCDTQHIAIGTGPELTGLKIEFQVRDEKVVVESPVGVNIPAGTPHTQRIVDGSGHFFNFVPKSNYNDGLMS*
Ga0134122_108080311	3300010400	Terrestrial Soil	GPELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLIS
Ga0134121_108732892	3300010401	Terrestrial Soil	GLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0134123_106065582	3300010403	Terrestrial Soil	LKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLIS*
Ga0134123_119055151	3300010403	Terrestrial Soil	GLKIEFQIRDEKVVVESPVGVNIPAGTPHSQRIVDGSGHFFNFVPKSNYNDGLM*
Ga0137444_10772101	3300011397	Soil	KIEFQIRDEKVVVESPVGVNIPAGTPHTQRIVEGSGHFFNFVPKSNYNDGLM*
Ga0137453_10606911	3300012034	Soil	TGPELTGLKIEFQVRDEKVVVESPVGVNIPAGTPHSQRIVDGSGHFFNFVPKSSYNDGLLS*
Ga0137346_10313831	3300012137	Soil	DTQHIAIGAGPELAGLRIEFQVRDEKIIAESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKANYNDGLM*
Ga0137352_10322341	3300012164	Soil	PELTGLRIEFQVHDEKIVAESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKAHYNDGLL*
Ga0137376_110068402	3300012208	Vadose Zone Soil	GTGPEFSGLKIEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKRDYNDGLA*
Ga0137447_10213702	3300012226	Soil	LTGLKIEFQVRDEKVVVESPVGVNIPAGTPHTQRIIEGSGHFFNFVPKSNYNDGLM*
Ga0137384_101292221	3300012357	Vadose Zone Soil	TGPGLTGLTIEFVIGDEKVVNESPVGVHIPARTPHSQRIVGGSGHFFNFVPKSNYNDSLVQ*
Ga0137373_107369322	3300012532	Vadose Zone Soil	LTGLKIEFQIRDEKVIVESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKGNYNDGLAS*
Ga0157286_103175372	3300012908	Soil	TGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0137359_117260751	3300012923	Vadose Zone Soil	DTQHIAIGTGAELSGLKIEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKSNYNEGLI*
Ga0137407_108155242	3300012930	Vadose Zone Soil	HNCDTQHIAIGSGPELTGLKIEFVIRDEKVVVESPMGVNNPAGTPHCQRIIEGSGHFFNFVPKPNYNDSLV*
Ga0137407_111260212	3300012930	Vadose Zone Soil	QHIAIGTGPELSGLKIEFQIRDEKVVVERPVGVHIPAGTPHTQRIVEGSGHFFNFVPKSNYNDGLA*
Ga0164298_109857592	3300012955	Soil	EFQIRDDKIVVESPVGVNIPPGTPHSQRIIEGAGHFFNFVPKSFYNDGLIS*
Ga0126369_111829961	3300012971	Tropical Forest Soil	HIAIGTGPDLTGLKIEFVIGDEKVVAESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKSNYNDSLV*
Ga0134087_101548381	3300012977	Grasslands Soil	DTYHIAIGPGPDLTGLTIEFVIGDEEVVTESPVGVHIPAGIPHSQRIVGGSGHFFNFVPKSNYNDSLVQ*
Ga0157378_129736632	3300013297	Miscanthus Rhizosphere	AIGTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHSQRIIEGTGHVFNFVPKSCYNDGLMS*
Ga0075323_10171492	3300014301	Natural And Restored Wetlands	KIEFQILDEKLVVESPVGVNIPVGTRHSQRIIEGSGHFFNFVPKSNYNDGLA*
Ga0075352_10627511	3300014324	Natural And Restored Wetlands	LKIEFQIRDEKIVVESPMGVNIPAGTPHTQRIIEGTGHFFNFVPKRNYNDGLMS*
Ga0180080_10544021	3300014870	Soil	NCDTQHIAIGKGAELTGLKIEFQIRDEKVVVESPMGVHIPAGTPHSQRIVEGSGHFFNFVPKSHYNDGLLQ*
Ga0180087_10056902	3300014872	Soil	NCDTQHIAIGTGPDLSGLKIEFTVENETVVVESPVGVNIPARTPHTQRIIEGSGHFFNFVPKRYYNDGLI*
Ga0180087_10961721	3300014872	Soil	QHIAIGSGAELTGLKIEFVIRDERLVVESPVGVNVPAGTPHCQRIIEGSGHFFNFVPKDNYNESLV*
Ga0173483_108915762	3300015077	Soil	AIGTGPKLAGLKIEFQIRDEKVVVESPVGVNIPAGTPHTQRIVDGSGHFFNFVPKSNYNDGLM*
Ga0180089_10503531	3300015254	Soil	LKIEFQIRDEKVVVESPVGVHIPAGTLHSQRIVEGTGHFFNFVPKSNYNDGLV*
Ga0182007_100740211	3300015262	Rhizosphere	TGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSFYNDGLMS*
Ga0132257_1043340202	3300015373	Arabidopsis Rhizosphere	IAIGTGPELTGLKIEFVIGDDKVVVESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDGLV*
Ga0132255_1001929841	3300015374	Arabidopsis Rhizosphere	TGPELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLIS*
Ga0132255_1039842041	3300015374	Arabidopsis Rhizosphere	HIAIGTGPELTGLKIEFQIRDDKIVVESPVGVNIPAGTPHSQRIIEGTGHFFNFVPKSFYNDGLLS*
Ga0184624_100085111	3300018073	Groundwater Sediment	AELSGLKIEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKSNYNDGLA
Ga0184633_100564194	3300018077	Groundwater Sediment	DTQHIAIGTRSELTGLKIEFQIRDEKVVVESPVGVHIPAGTPHSQRIVEGSGHFFNFVPKSNYNDGLV
Ga0184633_103453711	3300018077	Groundwater Sediment	HIAIGTGPELTGLKIEFQVRDEKVVVESPVGVNIPAGTPHSQRIVDGSGHFFNFVPKRNYNDGLMS
Ga0184629_102778101	3300018084	Groundwater Sediment	KGAELTGLKIEFQIRDEKVVVESPVGVHIPAGTLHSQRIVEGTGHFFNFVPKSNYNDGLV
Ga0190265_109992972	3300018422	Soil	GLKIEFQILDEKVIVESPVGVNIPAGTRHSQRIIEGSGHFFNFVPKSHYNDGLA
Ga0190265_132537601	3300018422	Soil	ELTGLTIEFQIRDDKMVVESPVGVNIPAGTPHSQRIIEGVGHFFNFVPKSFYNDGLMS
Ga0066655_109106082	3300018431	Grasslands Soil	DTYHIAIGPGPDLTGLTIEFVIGDEKVVNESPVGVHIPASVAHSQRIVGGSGHFFNFVPKSNYNDSLVQ
Ga0187894_104205671	3300019360	Microbial Mat On Rocks	TQHIAIGTGPELTGLKIEFVIGDEKVVVESPVGVNIPAGTPHCQRIVEGSGHFFNFVPKPNYNDGLV
Ga0206352_100664691	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	LTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLMS
Ga0210378_102624902	3300021073	Groundwater Sediment	KIEFQIRDEKVVVESPMGVNIPAGTPHSQRIIEGSGHFFNFVPKSNYNDGLAS
Ga0210379_103792202	3300021081	Groundwater Sediment	NCDTQHIAIGTGPELTGLKIEFQVRDEKVVVESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKRNYNDGLM
Ga0210408_102619511	3300021178	Soil	TYHISIGTGPDLSGLKVEFAVGDEKVVAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGLMS
Ga0224452_10548151	3300022534	Groundwater Sediment	SGPELTGLKIEFVIRDEKVVVESPMGVNIPAGTPHCQRIIEGSGHFFNFVAKPNYNDSLV
Ga0222623_101111801	3300022694	Groundwater Sediment	IAIGSGPELTGLKIEFQIRDEKVVVESPMGVNIPAGTPHSQRIIEGSGHFFNFVPKSNYNDGLV
Ga0209619_101582142	3300025159	Soil	IEFQIRDEKVVVESPVGVHIPAGTPHSQRIVEGSGHFFNFVPKSNYNDGLLQ
Ga0209109_101458561	3300025160	Soil	IEFQIRDEKVVVESPMGVHIPAGTPHSQRIVEGSGHFFNFVPKSNYNDGLLQ
Ga0209108_100273841	3300025165	Soil	GLKIEFQIRDEKVVVESPMGVHIPAGTPHSQRIVEGSGHFFNFVPKSNYNDGLLQ
Ga0209324_107934291	3300025174	Soil	TGLKIEFQIRDEQVVVESPLGVHIPAGTPHSQRIFEGSGHFFNFVPKSNYNDGLLQ
Ga0209431_107574481	3300025313	Soil	IGKGPELAGLKIEFQIRDEKVVVESPVGVHIPAGTAHSQRIVEGSGHFFNFVPKSYYNDGLA
Ga0209323_103815212	3300025314	Soil	KIEFQIRDEQVVVESPVGVHIPAGTPHSQRIFEGSGHFFNFVPKSNYNDGLLQ
Ga0209641_105376551	3300025322	Soil	KIEFQIRDEQVVVESPLGVHIPAGTPHSQRIFEGSGHFFNFVPKSNYNDGLLQ
Ga0207653_102076111	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	TGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLM
Ga0207707_102181423	3300025912	Corn Rhizosphere	HNCDTQHIAIGIGPELTGLKIEFQIRDEKVVVESPMGVNIPAGTPHSQRIIDGSGHFFNFVPKSSYNDGLA
Ga0207686_117311502	3300025934	Miscanthus Rhizosphere	IEFQIRDEKVVVESPVGVHIPAGTPHTQRIIEGSGHFFNFVPKSNYNEGLI
Ga0208531_10051841	3300026020	Rice Paddy Soil	RELTGLKIEFQILDEKLVVESPVGVNIPAGTRHSQRIIEGSGHFFNFVPKSNYNDGLA
Ga0207641_120096782	3300026088	Switchgrass Rhizosphere	DTQHIAIGTGPELTGLKIEFRIRDDKMVVESPVGVNIPAGTPHAQRIIEGTGHFFNFVPKSSYNDGLMS
Ga0209235_12592161	3300026296	Grasslands Soil	GKGPELTGLKAEFVIGGEKVVVESPVGVHVPARVPHSQRMIEGSGHFFNFVPRDNYNESL
Ga0209152_103051041	3300026325	Soil	TYHIAIGPGLDLTGLTIEFAIGDEKVICESPLGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDSLVQ
Ga0209819_101537862	3300027722	Freshwater Sediment	LTGLRIEFQVGDEKTVAESPVGVNIPAGTPHSQRIVEGSGHFFNFVPKAHYNDGLL
Ga0209701_101907662	3300027862	Vadose Zone Soil	DTYHIAIGAGPDLTGLKVEFVVGDEKVVAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGLVQ
Ga0209814_102439261	3300027873	Populus Rhizosphere	PELTGLKIEFVIGGEKVVVESPVGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDGLV
Ga0209481_103358582	3300027880	Populus Rhizosphere	IAIGTGSDLTGLKIEFVIGDEKVVVESPVGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDGLV
Ga0299907_104753992	3300030006	Soil	HNCDTQHIAIGKGPELTGLKIEFQIGDEKVVVESPMGVNIPAGTPHSQRIIEGSGHFFNFVPKSHYNDGLM
Ga0308187_103360681	3300031114	Soil	GLKIEFKIRADKVVVESPVGVNIPAGTPHSQRIIEGSGHFFNFVPKSNYNDGLV
Ga0310888_103690812	3300031538	Soil	HIAIGTGPELTGLKIEFQIHDDKMVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS
Ga0307408_1001874861	3300031548	Rhizosphere	IEFQIRDDKMVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKNFYNDGLMS
Ga0306917_105727651	3300031719	Soil	TQHIAIGTGPDLTGLKIEFVIRDEKVVVESPVGVHIPAGTPHSQRMVEGSGHFFNFVPKSNYNDSLV
Ga0307468_1019971942	3300031740	Hardwood Forest Soil	IAIGTGPELTGLKIEFVIRDEKVVVESPMGVNIPAGTPHCQRIIEGSGHFFNFVPKPNYNDSLV
Ga0310917_102287933	3300031833	Soil	HIAIGNGPELGGLKIEFQVEDKKTVVESPVGVHIPAGTSHSQRIVEGSGQFFNFVPKANYNDGLV
Ga0307410_112155782	3300031852	Rhizosphere	QHIAIGTGPELGGLKIEFQIRDDKLVVESPVGVNIPAGTPHSQRIIEGTGHFFNFVPKSFYNDGLMS
Ga0307412_103593923	3300031911	Rhizosphere	IAIGTGPELTGLKIEFQIRDDKMIVESPVGVNIPAGTPHSQRIIEGAGQFFNFVPKSFYNDGLMS
Ga0310901_105228212	3300031940	Soil	NCDTQHIAIGTGPELTGLKIEFQIHDDKMVVESPVGVNIPAGTPHSQRIIEGAGHFFNFVPKSFYNDGLMS
Ga0310909_106360302	3300031947	Soil	KIEFVIRDEKVVVESPVGVHIPAGTPHSQRMVEGSGHFFNFVPKSNYNDSLV
Ga0318533_114051711	3300032059	Soil	PELGGLKIEFQVEDKKTVVESPVGVHIPAGTSHSQRIVEGSGQFFNFVPKANYNDGLV
Ga0310890_112766451	3300032075	Soil	IAIGTGPKLAGLKIEFQIRDEKVVVESPVGVNIPAGTPHTQRIVDGSGHFFNFVPKSNYNDGLM
Ga0307415_1002990301	3300032126	Rhizosphere	TGLKIEFQIGDDKVVVESPVGVNIPGGTPHSQRIIEGAGHFFNFVPKSSYNDGLMS
Ga0307471_1004310881	3300032180	Hardwood Forest Soil	GTGPDLTGLKVEFGVGDEKVVAESPVGVHIPAGTPHSQRIVGGSGHFFNFVPKSNYNDGL
Ga0306920_1014573033	3300032261	Soil	QHIAIGTGPDLTGLKIEFVIRDEKVVVESPVGVHIPAGTPHSQRMVEGSGHFFNFVPKSNYNDSLV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences