Metagenome Family F062542

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F062542
Family Type	Metagenome
Number of Sequences	130
Average Sequence Length	65 residues
Representative Sequence	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGQHPADESSH
Number of Associated Samples	78
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	37.69 %
% of genes near scaffold ends (potentially truncated)	30.77 %
% of genes from short scaffolds (< 2000 bps)	80.77 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (52.308 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (34.615 % of family members)
Environment Ontology (ENVO)	Unclassified (31.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.846 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.49% β-sheet: 0.00% Coil/Unstructured: 58.51%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF13328	HD_4	6.92
PF03576	Peptidase_S58	3.85
PF00072	Response_reg	2.31
PF13458	Peripla_BP_6	2.31
PF01243	Putative_PNPOx	2.31
PF00557	Peptidase_M24	2.31
PF01212	Beta_elim_lyase	2.31
PF00487	FA_desaturase	2.31
PF01541	GIY-YIG	1.54
PF00293	NUDIX	1.54
PF00892	EamA	1.54
PF01590	GAF	1.54
PF02518	HATPase_c	1.54
PF02627	CMD	0.77
PF05239	PRC	0.77
PF00078	RVT_1	0.77
PF04228	Zn_peptidase	0.77
PF01569	PAP2	0.77
PF04134	DCC1-like	0.77
PF13565	HTH_32	0.77
PF03992	ABM	0.77
PF01957	NfeD	0.77
PF11987	IF-2	0.77
PF00239	Resolvase	0.77
PF13546	DDE_5	0.77
PF04909	Amidohydro_2	0.77
PF01028	Topoisom_I	0.77
PF12849	PBP_like_2	0.77
PF02321	OEP	0.77
PF13763	DUF4167	0.77
PF06689	zf-C4_ClpX	0.77
PF09594	GT87	0.77
PF00450	Peptidase_S10	0.77
PF01139	RtcB	0.77
PF08734	GYD	0.77
PF11638	DnaA_N	0.77
PF08447	PAS_3	0.77
PF14247	DUF4344	0.77
PF07977	FabA	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	7.69
COG1167	DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain	Transcription [K]	4.62
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	2.31
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	2.31
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	2.31
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	2.31
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	2.31
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	2.31
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	2.31
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	2.31
COG1003	Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain	Amino acid transport and metabolism [E]	2.31
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	2.31
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	2.31
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	2.31
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	2.31
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	2.31
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	2.31
COG3033	Tryptophanase	Amino acid transport and metabolism [E]	2.31
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	2.31
COG4992	Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase	Amino acid transport and metabolism [E]	2.31
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.54
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.77
COG0764	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	Lipid transport and metabolism [I]	0.77
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	0.77
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.77
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.77
COG2321	Predicted metalloprotease	General function prediction only [R]	0.77
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.77
COG2939	Carboxypeptidase C (cathepsin A)	Amino acid transport and metabolism [E]	0.77
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.77
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	0.77
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.77
COG4706	Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain	Lipid transport and metabolism [I]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
All Organisms	root	All Organisms	47.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
cellular organisms	root	All Organisms → cellular organisms	47.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.54 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.62 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.54 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.54 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.08 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.31 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.54 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.54 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.54 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.08 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2.31 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.31 %
Curvibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter	1.54 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	1.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.77 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.77 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.08 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2.31 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.31 %
unclassified Curvibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter	1.54 %
unclassified Magnetospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum	0.77 %
unclassified Xanthobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → unclassified Xanthobacter	0.77 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.77 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.77 %
Xanthobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter agilis	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.31 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.08 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2.31 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.31 %
Curvibacter sp. PD_MW3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp. PD_MW3	1.54 %
Magnetospirillum sp. LM-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. LM-5	0.77 %
Xanthobacter sp. 35-67-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → unclassified Xanthobacter → Xanthobacter sp. 35-67-6	0.77 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.77 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.77 %
Xanthobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter agilis	0.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.77 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.77 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_11057750	All Organisms → cellular organisms → Bacteria → Proteobacteria	1614	Open in IMG/M
3300000550\|F24TB_10387621	Not Available	1184	Open in IMG/M
3300000956\|JGI10216J12902_108425108	Not Available	535	Open in IMG/M
3300003999\|Ga0055469_10272078	Not Available	544	Open in IMG/M
3300005045\|Ga0071328_103294	All Organisms → cellular organisms → Bacteria	3111	Open in IMG/M
3300005045\|Ga0071328_142907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2432	Open in IMG/M
3300005332\|Ga0066388_100078671	All Organisms → cellular organisms → Bacteria	3654	Open in IMG/M
3300005332\|Ga0066388_100882354	Not Available	1475	Open in IMG/M
3300005332\|Ga0066388_102657319	Not Available	913	Open in IMG/M
3300005341\|Ga0070691_10342811	Not Available	827	Open in IMG/M
3300005347\|Ga0070668_100136166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1976	Open in IMG/M
3300005356\|Ga0070674_100689044	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005406\|Ga0070703_10238426	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300005444\|Ga0070694_100206331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1467	Open in IMG/M
3300005459\|Ga0068867_100406040	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300005536\|Ga0070697_100722450	Not Available	879	Open in IMG/M
3300005713\|Ga0066905_100219936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1436	Open in IMG/M
3300005713\|Ga0066905_100415766	Not Available	1095	Open in IMG/M
3300005713\|Ga0066905_100442034	Not Available	1067	Open in IMG/M
3300005713\|Ga0066905_100904116	Not Available	773	Open in IMG/M
3300005713\|Ga0066905_101505617	Not Available	613	Open in IMG/M
3300005719\|Ga0068861_100509346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1089	Open in IMG/M
3300005764\|Ga0066903_102309338	Not Available	1039	Open in IMG/M
3300005983\|Ga0081540_1000618	All Organisms → cellular organisms → Bacteria → Proteobacteria	33752	Open in IMG/M
3300006049\|Ga0075417_10473783	Not Available	627	Open in IMG/M
3300006844\|Ga0075428_100066859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3935	Open in IMG/M
3300006844\|Ga0075428_100333862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1628	Open in IMG/M
3300006844\|Ga0075428_100415327	Not Available	1442	Open in IMG/M
3300006844\|Ga0075428_100435043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1405	Open in IMG/M
3300006844\|Ga0075428_100656442	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300006844\|Ga0075428_100731077	Not Available	1054	Open in IMG/M
3300006844\|Ga0075428_101203174	Not Available	799	Open in IMG/M
3300006844\|Ga0075428_102250265	Not Available	562	Open in IMG/M
3300006845\|Ga0075421_100000119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	66012	Open in IMG/M
3300006845\|Ga0075421_100751990	Not Available	1127	Open in IMG/M
3300006846\|Ga0075430_100582038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300006846\|Ga0075430_101528050	Not Available	548	Open in IMG/M
3300006847\|Ga0075431_100730231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300006847\|Ga0075431_100840901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300006852\|Ga0075433_10026099	All Organisms → cellular organisms → Bacteria	4942	Open in IMG/M
3300006852\|Ga0075433_11078185	Not Available	699	Open in IMG/M
3300006852\|Ga0075433_11687924	Not Available	546	Open in IMG/M
3300006853\|Ga0075420_100550819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → unclassified Magnetospirillum → Magnetospirillum sp. LM-5	996	Open in IMG/M
3300006854\|Ga0075425_100540156	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300006880\|Ga0075429_101809875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	530	Open in IMG/M
3300006969\|Ga0075419_10082587	Not Available	2047	Open in IMG/M
3300006969\|Ga0075419_10948198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	623	Open in IMG/M
3300007004\|Ga0079218_11478887	Not Available	733	Open in IMG/M
3300009100\|Ga0075418_10022158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	6990	Open in IMG/M
3300009100\|Ga0075418_10089926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3263	Open in IMG/M
3300009100\|Ga0075418_10894283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960	Open in IMG/M
3300009100\|Ga0075418_11408281	Not Available	756	Open in IMG/M
3300009147\|Ga0114129_10631944	Not Available	1384	Open in IMG/M
3300009147\|Ga0114129_11978077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	705	Open in IMG/M
3300009157\|Ga0105092_10137453	Not Available	1353	Open in IMG/M
3300009811\|Ga0105084_1078256	Not Available	607	Open in IMG/M
3300009814\|Ga0105082_1123782	Not Available	506	Open in IMG/M
3300009817\|Ga0105062_1060497	Not Available	706	Open in IMG/M
3300009820\|Ga0105085_1048858	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300009820\|Ga0105085_1087052	Not Available	599	Open in IMG/M
3300009822\|Ga0105066_1161094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	518	Open in IMG/M
3300010037\|Ga0126304_10974541	Not Available	578	Open in IMG/M
3300010047\|Ga0126382_10194137	All Organisms → cellular organisms → Bacteria → Proteobacteria	1438	Open in IMG/M
3300010047\|Ga0126382_10654185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → Xanthobacter agilis	874	Open in IMG/M
3300010047\|Ga0126382_11618330	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	601	Open in IMG/M
3300010358\|Ga0126370_12116816	Not Available	552	Open in IMG/M
3300010362\|Ga0126377_11839748	Not Available	681	Open in IMG/M
3300010399\|Ga0134127_10483050	Not Available	1246	Open in IMG/M
3300010400\|Ga0134122_11291780	Not Available	737	Open in IMG/M
3300010403\|Ga0134123_11164224	Not Available	799	Open in IMG/M
3300010868\|Ga0124844_1078665	Not Available	1229	Open in IMG/M
3300012948\|Ga0126375_10155254	Not Available	1448	Open in IMG/M
3300012957\|Ga0164303_11485120	Not Available	511	Open in IMG/M
3300014259\|Ga0075311_1137769	Not Available	550	Open in IMG/M
3300014263\|Ga0075324_1084331	Not Available	664	Open in IMG/M
3300014272\|Ga0075327_1029327	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300015373\|Ga0132257_100433629	All Organisms → cellular organisms → Bacteria → Proteobacteria	1603	Open in IMG/M
3300017997\|Ga0184610_1092507	Not Available	951	Open in IMG/M
3300018053\|Ga0184626_10098981	Not Available	1235	Open in IMG/M
3300018053\|Ga0184626_10294431	Not Available	674	Open in IMG/M
3300018053\|Ga0184626_10412188	Not Available	538	Open in IMG/M
3300018056\|Ga0184623_10054333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter → unclassified Xanthobacter → Xanthobacter sp. 35-67-6	1831	Open in IMG/M
3300018056\|Ga0184623_10331528	Not Available	684	Open in IMG/M
3300018063\|Ga0184637_10144993	Not Available	1465	Open in IMG/M
3300018079\|Ga0184627_10106871	Not Available	1479	Open in IMG/M
3300018079\|Ga0184627_10290571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300018422\|Ga0190265_10001829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14031	Open in IMG/M
3300018422\|Ga0190265_10275363	Not Available	1742	Open in IMG/M
3300018422\|Ga0190265_10784212	Not Available	1076	Open in IMG/M
3300018422\|Ga0190265_11860663	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300018429\|Ga0190272_10023096	Not Available	3262	Open in IMG/M
3300018432\|Ga0190275_12291324	Not Available	618	Open in IMG/M
3300018432\|Ga0190275_12987090	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300018469\|Ga0190270_10073608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2499	Open in IMG/M
3300018469\|Ga0190270_13370412	Not Available	507	Open in IMG/M
3300018481\|Ga0190271_12889128	Not Available	577	Open in IMG/M
3300019360\|Ga0187894_10177973	Not Available	1056	Open in IMG/M
3300025904\|Ga0207647_10634994	Not Available	587	Open in IMG/M
3300025934\|Ga0207686_10346839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp. PD_MW3	1117	Open in IMG/M
3300025937\|Ga0207669_10862607	Not Available	754	Open in IMG/M
3300026118\|Ga0207675_100256512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1694	Open in IMG/M
3300026118\|Ga0207675_100638307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1070	Open in IMG/M
3300027577\|Ga0209874_1122453	Not Available	605	Open in IMG/M
3300027873\|Ga0209814_10213460	Not Available	835	Open in IMG/M
3300027880\|Ga0209481_10034784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2294	Open in IMG/M
3300027880\|Ga0209481_10171663	Not Available	1076	Open in IMG/M
3300027907\|Ga0207428_10040010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3805	Open in IMG/M
3300027907\|Ga0207428_10153580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp. PD_MW3	1751	Open in IMG/M
3300027909\|Ga0209382_10000399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	71615	Open in IMG/M
3300027909\|Ga0209382_10006210	All Organisms → cellular organisms → Bacteria	15395	Open in IMG/M
3300027909\|Ga0209382_10009953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11884	Open in IMG/M
3300027909\|Ga0209382_10045091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5272	Open in IMG/M
3300027909\|Ga0209382_10055687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4700	Open in IMG/M
3300027909\|Ga0209382_10247328	All Organisms → cellular organisms → Bacteria → Proteobacteria	2026	Open in IMG/M
3300027909\|Ga0209382_10548356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1267	Open in IMG/M
3300027909\|Ga0209382_10556327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1255	Open in IMG/M
3300027909\|Ga0209382_10604698	Not Available	1193	Open in IMG/M
3300027909\|Ga0209382_11395893	Not Available	704	Open in IMG/M
3300027909\|Ga0209382_11426216	Not Available	694	Open in IMG/M
3300027948\|Ga0209858_1023546	Not Available	565	Open in IMG/M
3300031198\|Ga0307500_10052784	Not Available	987	Open in IMG/M
3300031455\|Ga0307505_10025822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2680	Open in IMG/M
3300031576\|Ga0247727_10010406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	16494	Open in IMG/M
3300031576\|Ga0247727_10057517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4619	Open in IMG/M
3300031576\|Ga0247727_10107228	All Organisms → cellular organisms → Bacteria → Proteobacteria	2894	Open in IMG/M
3300031740\|Ga0307468_100747650	Not Available	825	Open in IMG/M
3300031740\|Ga0307468_100805992	Not Available	801	Open in IMG/M
3300032012\|Ga0310902_10128172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1404	Open in IMG/M
3300032122\|Ga0310895_10260236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	805	Open in IMG/M
3300034818\|Ga0373950_0127349	Not Available	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.15%
Host-Associated	Host-Associated	43.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.69%
Plants	Host-Associated → Plants	43.85%
Aquatic	Environmental → Aquatic	8.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.46%
Sediment	Environmental → Aquatic → Sediment	6.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.38%
Cave	Environmental → Terrestrial → Cave	3.08%
Freshwater	Environmental → Aquatic → Freshwater	0.77%
Marine	Environmental → Aquatic → Marine	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	35.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.62%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.92%
Sand	Environmental → Terrestrial → Soil → Sand	6.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.62%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	3.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.77%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	35.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.08%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.54%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	34.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.08%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.31%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.31%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	2.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.77%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.77%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.77%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027948	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_110577501	3300000363	Soil	MDKSKYAVRVDNIYFLNRIGASLRWATKDIAREELPTDIKHLLNRLDRLEARARAKGRHPADESAR*
F24TB_103876213	3300000550	Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARGKARHPADES
JGI10216J12902_1084251081	3300000956	Soil	MEQRTYATRLNNIYFLARIGESLRWATRDIAREQLPDDIQHLLRRLDRLERRKNAVKQLPDNDPAA*
Ga0055469_102720782	3300003999	Natural And Restored Wetlands	MPHRKHAAQIDNIYFLARIGATLRWATQDIARQDLPADIKRLLNRLDRLEAKAKAKGRGPGDDKGS*
Ga0071328_1032943	3300005045	Permafrost	MVMRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDSDGGPAA*
Ga0071328_1429072	3300005045	Permafrost	MRKSKYTAQIDNIYFLSRIGATLRWATQDIGREELPADVKRLLGRLERLEARAKAKNDDDDGDPGA*
Ga0066388_1000786717	3300005332	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLSRLDRLEARARAKGRDTADE*
Ga0066388_1008823543	3300005332	Tropical Forest Soil	MDKSKYAVRVDNIYFMNRIGASLRWATEDISREELPADIKHLLNRLDRLEARARAKRRHPADESSD*
Ga0066388_1026573192	3300005332	Tropical Forest Soil	SQRRVEMSKPPPKYTARIDNIYFLSRIGMSLRWATQDIAREDLPANVKNLLARLDRLEARAKAKDVPPDDSPAG*
Ga0070691_103428111	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	AMDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH*
Ga0070668_1001361664	3300005347	Switchgrass Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLGRLDRLEARARAKGRHPGDDTSE*
Ga0070674_1006890441	3300005356	Miscanthus Rhizosphere	VMRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA*
Ga0070703_102384261	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLGRLDRLEARARAKGRNPADESSH*
Ga0070694_1002063311	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH*
Ga0068867_1004060402	3300005459	Miscanthus Rhizosphere	MRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAE
Ga0070697_1007224501	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH*
Ga0066905_1002199363	3300005713	Tropical Forest Soil	SWSIKLASQRRVQMSKPAKYTARIENIYFLSRIGLSLRWATQDIAREDLPANIKHLLARLDRLEARAKGKGEPPPDDSPAG*
Ga0066905_1004157661	3300005713	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAGEELPADIKHLLSRLDRLEARAQVKGRHPVDESSH*
Ga0066905_1004420342	3300005713	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRHPGDNTSE*
Ga0066905_1009041162	3300005713	Tropical Forest Soil	MANPKYAARIDNIYFVGRIGESLRWATEDIAREQLPTNIQHLLARLDRLEARAQAKRHKADQRHS*
Ga0066905_1015056172	3300005713	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDISREELPADIKHLLNRLDRLEARARAKGRHSADESSD*
Ga0068861_1005093461	3300005719	Switchgrass Rhizosphere	IYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH*
Ga0066903_1023093382	3300005764	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGQHPADESSH*
Ga0081540_100061844	3300005983	Tabebuia Heterophylla Rhizosphere	MDNSKYAARVDNIYFLNRIGASLRWATQDIARQELPADIKHLLNRLDRLEARARAKARHPADE*
Ga0075417_104737832	3300006049	Populus Rhizosphere	MQNSKYSARVDNIYFLSRIGSSLRWATQDIAAEDLPADVKHLLARLDRLEARARAMTQANNDPA*
Ga0075428_1000668598	3300006844	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIAEEELPANIKHLLARLDRLEARAKAKRQQPIGGRSPRA*
Ga0075428_1003338623	3300006844	Populus Rhizosphere	WKMQNSKYSARVDNIYFLSRIGSSLRWATQDIAAEDLPADVKHLLARLDRLEARARAMTQANNDPA*
Ga0075428_1004153273	3300006844	Populus Rhizosphere	MAKAKYTARIDNIYFLPRIGLSLRWATQGLAREDLPASIRQLLARLERVEARDKAKAQTGENGPSP*
Ga0075428_1004350432	3300006844	Populus Rhizosphere	MQNSKYSVRVDNIYFLSRIGSSLRWVTQDIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA*
Ga0075428_1006564421	3300006844	Populus Rhizosphere	MQNSKYSARVDNIYFLSRIGSSLRWVTQGIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA*
Ga0075428_1007310773	3300006844	Populus Rhizosphere	MRNSKYTARLDNIYFLSRVGSTLRWATQDIAREELPADIKHLLARLDRLEARTNPTPPPPDNDPA*
Ga0075428_1012031741	3300006844	Populus Rhizosphere	MQMDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEVRAKAKRQHPIDGRSPRA*
Ga0075428_1022502651	3300006844	Populus Rhizosphere	MAVDVIPAMDKSKYVVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRHSADE*
Ga0075421_10000011938	3300006845	Populus Rhizosphere	MAKAKYTARIDNIYFLPRIGLSLRWATQGLAREDLPASIRQLLARLERVEARDKAKAQTGEKGPSP*
Ga0075421_1007519903	3300006845	Populus Rhizosphere	MQMDKPQYTAKIENIYFLARVGETLRWATQDIADEELPANIKHLLVKLDRLEARAEAKRQRPISTN
Ga0075430_1005820381	3300006846	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIAEEELPANIKHLLARLDRLEARAKAKRQQPIG
Ga0075430_1015280502	3300006846	Populus Rhizosphere	MDEPRYTAKIDNIYFLGRVGETLRWVTQDIAEEELPPHIKHLLTRLDRLEARAEA
Ga0075431_1007302312	3300006847	Populus Rhizosphere	MQNAKYTARVDNIYFLSRIGSSLRWATQDIASADLPADVKHLLARLDRLEARARAMTQANNDPD*
Ga0075431_1008409012	3300006847	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEARAKAKRQQPIGGRSPRA*
Ga0075433_100260993	3300006852	Populus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKARHPADESSE*
Ga0075433_110781852	3300006852	Populus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRH
Ga0075433_116879241	3300006852	Populus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRHPAESSE*
Ga0075420_1005508191	3300006853	Populus Rhizosphere	KYTARIDNIYFLPRIGLSLRWATQGLAREDLPASIRQLLARLERVEARDKAKAQTGENGPSP*
Ga0075425_1005401562	3300006854	Populus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARAR
Ga0075429_1018098752	3300006880	Populus Rhizosphere	RVDNIYFLSRIGSSLRWATQDIAAEDLPADVKHLLARLDRLEARARAMTQANNDPA*
Ga0075419_100825871	3300006969	Populus Rhizosphere	MDKPKYTARIENIYFLARVGETLRWATQDIADAELPANVKHLLAKLDRLEARAKARRQRPTDDPSTRAT*
Ga0075419_109481982	3300006969	Populus Rhizosphere	MQNSKYTARVDNIYFLSRIGSSLRWATQDIAAEDLPADVKHLLARLDRLEARARAMTQANNDPA*
Ga0079218_114788871	3300007004	Agricultural Soil	MQNSKYSVRVDNIYFLSRIGSTLRWVTQDIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA*
Ga0075418_100221584	3300009100	Populus Rhizosphere	MRNSKYTARLENIYFLSRVGSTLRWATQDIAREELPADIKHLLARLDRLEARTNPTPPPPDNDPA*
Ga0075418_100899264	3300009100	Populus Rhizosphere	LAVGDITMDKAKYAARIDNIYFLTRIGESLRWATDDIAREELPPNIQHLLARLDRLEARAVAKRQKADNDAP*
Ga0075418_108942832	3300009100	Populus Rhizosphere	MDKPKYTARIENIYFLARVGETLRWATQDIADAELPANIKHLLDKLDRLEARAKAKRQRPTDDPSTRAT*
Ga0075418_114082811	3300009100	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEARAK
Ga0114129_106319442	3300009147	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEVRAKAKRQHPIDGRSPRA*
Ga0114129_119780771	3300009147	Populus Rhizosphere	WKMQNSKYSVRVDNIYFLSRIGSSLRWVTQDIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA*
Ga0105092_101374532	3300009157	Freshwater Sediment	MDRPKYTAKIDNIFFLARIGSSLRWATEDIAREELPPNIKPLLSRLDRLEARAKAKGQGPEGDPAA*
Ga0105084_10782562	3300009811	Groundwater Sand	MENPKYTARVDNIYFLSRIGSSLRWATQDIAREDLPADIKHLLARLARVEARARAMTRPDNDPA*
Ga0105082_11237821	3300009814	Groundwater Sand	MDKPKYTAQIDNIFFLARIGSSLRWATQDVAREELPANIRQLLNRLDRLEARAKAREEKGPDTDPAA*
Ga0105062_10604971	3300009817	Groundwater Sand	MENPKYTARVDNIYFLSRIGSSLRWATQDIASEDLPADIKHLLARLDRVEARDRAMTRAHNDPA*
Ga0105085_10488582	3300009820	Groundwater Sand	MENPKYTARVDNIYFLSRIGSSLRWATQDIAREDLSADIKHLLARLDRVEARDRAMTRAHNDPA*
Ga0105085_10870522	3300009820	Groundwater Sand	MDKSKYAARIENIYFLPRIGRSLRWATEDVARDELPANIKHLLARLDRLEAKARAKEREPDDHPACHFIRGWRLDADLEVR
Ga0105066_11610942	3300009822	Groundwater Sand	ESPKYTARVDNIYFLSRIGSSLRWATQDIAREDLSADIKHLLARLDRVEARDRAMTRAHNDPA*
Ga0126304_109745411	3300010037	Serpentine Soil	MRNSKYTARLDNIYFLSRVGSTLRWATQDVAREELPTDIKHLLARLDRLEARANATPPQPDNDPA*
Ga0126382_101941373	3300010047	Tropical Forest Soil	DKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLSRLDRLEARAQVKGRHPVDESSH*
Ga0126382_106541851	3300010047	Tropical Forest Soil	KSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLSRLDRLEARAQAKGRHPADESSH*
Ga0126382_116183301	3300010047	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATDDIARKELPADIKHLLNRLDRLEARARAKGRDPADD*
Ga0126370_121168162	3300010358	Tropical Forest Soil	KYAVRVDNIYFMNRIGASLRWATEDISREELPADIKHLLNRLDRLEARARAKRRHPADESSD*
Ga0126377_118397482	3300010362	Tropical Forest Soil	MAKADPKYAARVDNIYFLARIGESLRWATDDIAREQLPANIQQLLARLDRLEARAEAKRQKADSDAT*
Ga0134127_104830502	3300010399	Terrestrial Soil	MRKPKHTAQIENIYFLSRIGSTLRWATQDIARDDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA*
Ga0134122_112917801	3300010400	Terrestrial Soil	SHYARMRKSRHAARIENIYFLSRIGATLRWATQDIGRDELPDDIKRLLNRLERLEARAKARDNDPDEGAAG*
Ga0134123_111642241	3300010403	Terrestrial Soil	MRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA*
Ga0124844_10786651	3300010868	Tropical Forest Soil	AFAVDVITMDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLSRLDRLEARARAKGRDTADE*
Ga0126375_101552541	3300012948	Tropical Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWETEDIAREELPADIKHLLNRLDRLEARARAKGRHPGDNTSE*
Ga0164303_114851201	3300012957	Soil	MDKSKYAVRIDNIYFLDRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKRRHPADESAS*
Ga0075311_11377691	3300014259	Natural And Restored Wetlands	VYFLSRIGLSLRWVTQDIAQEDLPAEVKRLLARLDRLEARLKAKGEPPDDGPGS*
Ga0075324_10843312	3300014263	Natural And Restored Wetlands	MSKPKYTARVDKVYFLSRIGLSLRWVTQDIAQEDLPAEVKRLLARLDRLEARLKAKGEPPDDGPGS*
Ga0075327_10293273	3300014272	Natural And Restored Wetlands	MSKPKYTARVDKVYFLSRIGLSLRWVTQDIAQEDLPAEVKRLLARLDRLEARPKAKGEPPDDGPGS*
Ga0132257_1004336291	3300015373	Arabidopsis Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKDRHP
Ga0184610_10925072	3300017997	Groundwater Sediment	MEMSKSKYTARIDNIYFLSRIGSSLRWATQDISRQELPANIKHLLARLDRLEARAKAKSEGPDNDPAS
Ga0184626_100989812	3300018053	Groundwater Sediment	ARVLRMEMSKSKYTERIDNIYFLSRIGSSLRWATQNISREELPANIKHLLARLDRLEARAEAKSEGPDNNSGP
Ga0184626_102944312	3300018053	Groundwater Sediment	MIPMHKSKYAARIDNVYFLAHIGQSLRWATEDIAREELPAEIKHLLAKLDRLEPKAKAKEHDPDDDPA
Ga0184626_104121882	3300018053	Groundwater Sediment	MSKTKYTARIDNIYFLSRIGSSLRWATQDFSREVLPANIKHLLARLDRLEARAKAKSEEPDNNPAP
Ga0184623_100543332	3300018056	Groundwater Sediment	MDKPKYTAQIDNIFFLARIGSSLRWATQDVAREELPANIRRLLNRLDRLEARAKAREEKGPDTDPAA
Ga0184623_103315281	3300018056	Groundwater Sediment	MDKSRYAARIDNIDVLPDIGRSLRWATEDVARDELPANIKHLLARLDRLEAKARAKEHHPDD
Ga0184637_101449933	3300018063	Groundwater Sediment	MSQSKYTARVDNIYFLSRIGLSLRWATVGMARDDLPANIRHLLARLDRLEARAKAKGQPSDNSPAA
Ga0184627_101068713	3300018079	Groundwater Sediment	MSQSKYTARVDNIYFLSRIGLSLRWATQDIAREDLPANIKHLLARLDRLEARAKAKGQPSDNSPAA
Ga0184627_102905712	3300018079	Groundwater Sediment	MGRSKYTARIDNIYFLDRIGASLRWATEDIAREQLPANIRHLLARLDRLEARERMKRERVDNDAP
Ga0190265_1000182911	3300018422	Soil	MNKPKHIARIANVFFLSRIGSTLRWASQDIAQEELPPDIKRLLGRLDRLEARAAAKDTGGKSRNGEAGD
Ga0190265_102753631	3300018422	Soil	QIENIYFLSRIGATLRWATQDIGREELPPDVKRLLGRLDRLEARSKAKNDDADDDPVE
Ga0190265_107842122	3300018422	Soil	MGKAKYTAQIENIYLLSRIGATLRWATQDIGREELPPEVKRLLSRLDRLEARSKAKSDNSDDD
Ga0190265_118606632	3300018422	Soil	MRKSKYTAQIDNIYFLSRIGATLRWATRDIGREELPADVKRLLGRLERLEARVKAKNDDADGDS
Ga0190272_100230963	3300018429	Soil	MRKPRHTAQIENIYFLSRIGSTLRWATQDIAREDIPTDIQRLLDRLERLEARAAAKNDDADGDPAE
Ga0190275_122913242	3300018432	Soil	QIENIYFLSRIGATLRWATQDIGREELPPEVKRLLSRLDRLEARSKAKSDNSDDDPAE
Ga0190275_129870902	3300018432	Soil	MRKPRHTAQIENIYFLSRIGSTLRWATQDIALEDIPTDIKRLLDRLERLEARAAAKNDDADGDPAE
Ga0190270_100736081	3300018469	Soil	MRNSKYTARLDNIYFLSRVGSTLRWATQDVAREKFAVDIKHVLARLDRLEARVNATPPQPDNDPA
Ga0190270_133704121	3300018469	Soil	MNKPKHIARIANVFFLSRIGSTLRWASQDIAQEELPPDIKRLLGRLDRLEARAAAKATGGKSRNGEAGD
Ga0190271_128891281	3300018481	Soil	MKKYIARIDNIYFLSRVGMSLRWATQDILKADLPPNVRDLLRQLDRLETRTLAKQLRS
Ga0187894_101779731	3300019360	Microbial Mat On Rocks	TRHYVSMPKPKYTAQIDNIYFLSRIGATLRWATQDIEREELPADIKRLLGRLERLEARVQAKKKDTDGDPPA
Ga0207647_106349941	3300025904	Corn Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLGRLDRLEARARAKGRHPGDDTSE
Ga0207686_103468392	3300025934	Miscanthus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH
Ga0207669_108626072	3300025937	Miscanthus Rhizosphere	AEDRRRDHAMDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH
Ga0207675_1002565121	3300026118	Switchgrass Rhizosphere	IYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA
Ga0207675_1006383073	3300026118	Switchgrass Rhizosphere	NIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKGRNPADESSH
Ga0209874_11224532	3300027577	Groundwater Sand	MDRPKYAARIENIYFLSRIGETLRWATQDIADEELPANIKHLLARLEVRAQAKRRRSINDPSRRV
Ga0209814_102134602	3300027873	Populus Rhizosphere	MQNSKYSARVDNIYFLSRIGSSLRWATQDIAAEDLPADVKHLLARLDRLEARARAMTQANNDPA
Ga0209481_100347844	3300027880	Populus Rhizosphere	MDKPKYTARIENIYFLARVGETLRWATQDIADAELPANIKHLLTKLDRLEARAKAKRQRPTDDPSTRAT
Ga0209481_101716633	3300027880	Populus Rhizosphere	MQMDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEVRAKAKRQHPIDGRSPRA
Ga0207428_100400102	3300027907	Populus Rhizosphere	MRNSKYTARLDNIYFLSRVGSTLRWATQDIAREELPADIKHLLARLDRLEARTNPTPPPPDNDPA
Ga0207428_101535801	3300027907	Populus Rhizosphere	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKARHPADESSE
Ga0209382_1000039942	3300027909	Populus Rhizosphere	MAKAKYTARIDNIYFLPRIGLSLRWATQGLAREDLPASIRQLLARLERVEARDKAKAQTGEKGPSP
Ga0209382_100062104	3300027909	Populus Rhizosphere	MDKAKYAARIDNIYFLTRIGESLRWATDDIAREELPPNIQHLLARLDRLEARAVAKRQKADNDAP
Ga0209382_100099537	3300027909	Populus Rhizosphere	MDKPKYTARIENIYFLARVGETLRWATQDIADAELPANIKHLLDKLDRLEARAKAKRQRPTDDPSTRAT
Ga0209382_100450915	3300027909	Populus Rhizosphere	MDKPKYTARIENIYFLARVGETLRWATQDIADAELPANVKHLLAKLDRLEARAKARRQRPTDDPSTRAT
Ga0209382_100556874	3300027909	Populus Rhizosphere	MQNSKYSARVDNIYFLSRIGSSLRWVTQGIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA
Ga0209382_102473284	3300027909	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEVRAKAKRQHPIDGRSPRA
Ga0209382_105483561	3300027909	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIAEEELPANIKHLLARLDRLEARAKAKRQQPIGGRSPRA
Ga0209382_105563272	3300027909	Populus Rhizosphere	MQNSKYSVRVDNIYFLSRIGSSLRWVTQDIAPEDLPANVKHLLARLDRLEARARAMTQPNNDPA
Ga0209382_106046981	3300027909	Populus Rhizosphere	MGKPKYTARIDNIYFLSRIGLSLRWATQDIAREDLPANIKHLLARLDRLEARAKTKA
Ga0209382_113958931	3300027909	Populus Rhizosphere	MDKPKYTARIENIYFLERVGETLRWATQDIADEELPANIKHLLARLDRLEARAKAKRQQPIDDRSPRA
Ga0209382_114262161	3300027909	Populus Rhizosphere	MGRSKYTARIDNIYFLDRIGESLRWATEDIAREELPANIQHLLARLDRLEARERMKRARVDNNPP
Ga0209858_10235462	3300027948	Groundwater Sand	MDESKYTARIDNIYFLDRIGESLRWATEDIAREELPANIQHLLARLDRLEARERLKRERVDNGAP
Ga0307500_100527842	3300031198	Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREKLPADIKHLLNRLDRLEARAKGRDPAD
Ga0307505_100258223	3300031455	Soil	MNRPKSIARIDNVVFLSRIGQTLRWATQDVAHEDLPPDIKRLLGRLERLEAREAKRDEKDPDNGVER
Ga0247727_100104064	3300031576	Biofilm	MGKSKYTARVDNIYFLSRIGLSLRWATQDIARGDLPADIRHLLARLDRLEERTKANDQPPDNGSAA
Ga0247727_100575172	3300031576	Biofilm	MSNSKYSARVDNIYFMSRIGLSLRWATQDIARKDLPADIKRLLVRLERQEMRAKAKDQPPDNDPAA
Ga0247727_101072281	3300031576	Biofilm	MSKSKYTARVDNIYFLSRIGLSLRWATQDIAREDLPTNIKQLLARLDQLEASSKAKDQPPDNGPAA
Ga0307468_1007476502	3300031740	Hardwood Forest Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKDRHPAESSE
Ga0307468_1008059921	3300031740	Hardwood Forest Soil	MRNSKYTARLDNIYFLSRVGSTLRWATQDIAREELPADIKHLLARLDRLEARANARPPPP
Ga0310902_101281722	3300032012	Soil	MRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA
Ga0310895_102602362	3300032122	Soil	DVMRKPKHTAQIENIYFLSRIGSTLRWATQDIAREDLPADIKRLLGRLDRLEARAEAKNDDTDGNPAA
Ga0373950_0127349_266_466	3300034818	Rhizosphere Soil	MDKSKYAVRVDNIYFLNRIGASLRWATEDIAREELPADIKHLLNRLDRLEARARAKDRHPADESSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F062542

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences