Metagenome / Metatranscriptome Family F062978

Basic Information
Family ID	F062978
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	43 residues
Representative Sequence	RDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Number of Associated Samples	104
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.08 %
% of genes near scaffold ends (potentially truncated)	92.31 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Most Common Taxonomy
Group	Bacteria (60.769 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (37.692 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.923 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF00498	FHA	3.08
PF03466	LysR_substrate	3.08
PF02665	Nitrate_red_gam	2.31
PF08240	ADH_N	2.31
PF02211	NHase_beta	1.54
PF00106	adh_short	1.54
PF13561	adh_short_C2	1.54
PF00196	GerE	1.54
PF00583	Acetyltransf_1	1.54
PF13602	ADH_zinc_N_2	1.54
PF04191	PEMT	1.54
PF01872	RibD_C	1.54
PF07690	MFS_1	1.54
PF03773	ArsP_1	1.54
PF13191	AAA_16	0.77
PF00149	Metallophos	0.77
PF12802	MarR_2	0.77
PF10400	Vir_act_alpha_C	0.77
PF13412	HTH_24	0.77
PF00107	ADH_zinc_N	0.77
PF04542	Sigma70_r2	0.77
PF02771	Acyl-CoA_dh_N	0.77
PF04107	GCS2	0.77
PF04229	GrpB	0.77
PF02566	OsmC	0.77
PF13280	WYL	0.77
PF00589	Phage_integrase	0.77
PF04978	DUF664	0.77
PF05694	SBP56	0.77
PF03372	Exo_endo_phos	0.77
PF00248	Aldo_ket_red	0.77
PF01381	HTH_3	0.77
PF13673	Acetyltransf_10	0.77
PF05506	PLipase_C_C	0.77
PF12681	Glyoxalase_2	0.77
PF13424	TPR_12	0.77
PF00685	Sulfotransfer_1	0.77
PF05544	Pro_racemase	0.77
PF01878	EVE	0.77
PF00291	PALP	0.77
PF00724	Oxidored_FMN	0.77
PF04397	LytTR	0.77
PF00085	Thioredoxin	0.77
PF13365	Trypsin_2	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2181	Nitrate reductase gamma subunit	Energy production and conversion [C]	2.31
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.54
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	1.54
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.54
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.77
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.77
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.77
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	0.77
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.77
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.77
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.77
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.77
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.77
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	0.77
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.77
COG3938	Proline racemase/hydroxyproline epimerase	Amino acid transport and metabolism [E]	0.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.77 %
Unclassified	root	N/A	39.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.77 %
Unclassified	root	N/A	39.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.77 %
Unclassified	root	N/A	39.23 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.54 %
Unclassified	root	N/A	39.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.85 %
Unclassified	root	N/A	39.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.15 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.62 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.08 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.08 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.08 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.54 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.54 %
Acidothermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales	0.77 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.77 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.77 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.77 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.77 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.77 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.62 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.08 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.54 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.54 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.54 %
unclassified Acidothermales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales	0.77 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.77 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.77 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.77 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.77 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.77 %
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	0.77 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.77 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.77 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	3.08 %
Tetrasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera	1.54 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.54 %
Pseudarthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Pseudarthrobacter	0.77 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	0.77 %
Leekyejoonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella	0.77 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.77 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.77 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.77 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.77 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.77 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.77 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.77 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.62 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.54 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.54 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.77 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	0.77 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	0.77 %
unclassified Actinomadura	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura	0.77 %
unclassified Pseudarthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Pseudarthrobacter → unclassified Pseudarthrobacter	0.77 %
Streptomyces guanduensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces guanduensis	0.77 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.77 %
Nocardiopsis composta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis composta	0.77 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.77 %
Tetrasphaera australiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera australiensis	0.77 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.77 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.77 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.77 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.23 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.62 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.54 %
Tetrasphaera japonica T1-X7	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica → Tetrasphaera japonica T1-X7	0.77 %
Streptomyces sp. WM6378	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WM6378	0.77 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	0.77 %
Tetrasphaera australiensis Ben110	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera australiensis → Tetrasphaera australiensis Ben110	0.77 %
Actinomadura sp. HBU206391	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. HBU206391	0.77 %
Pseudarthrobacter sp. AG30	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Pseudarthrobacter → unclassified Pseudarthrobacter → Pseudarthrobacter sp. AG30	0.77 %
Streptomyces sp. CC228A	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CC228A	0.77 %
Nakamurella panacisegetis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	0.77 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	0.77 %
Streptomyces guanduensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces guanduensis	0.77 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.77 %
Nocardiopsis composta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis composta	0.77 %
Acidothermales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	0.77 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.77 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.77 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100117186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2506	Open in IMG/M
3300003505\|JGIcombinedJ51221_10054033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1533	Open in IMG/M
3300003505\|JGIcombinedJ51221_10113915	Not Available	1081	Open in IMG/M
3300003505\|JGIcombinedJ51221_10338549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300005332\|Ga0066388_107285970	Not Available	556	Open in IMG/M
3300005437\|Ga0070710_10297488	Not Available	1052	Open in IMG/M
3300005437\|Ga0070710_10688186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300005467\|Ga0070706_101150227	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300005471\|Ga0070698_100961060	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005471\|Ga0070698_101865884	Not Available	554	Open in IMG/M
3300005537\|Ga0070730_10116962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1830	Open in IMG/M
3300005541\|Ga0070733_10100089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1849	Open in IMG/M
3300005546\|Ga0070696_101824374	Not Available	526	Open in IMG/M
3300005610\|Ga0070763_10002167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6931	Open in IMG/M
3300005712\|Ga0070764_10067832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1857	Open in IMG/M
3300005764\|Ga0066903_100867669	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300005921\|Ga0070766_10190424	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300006052\|Ga0075029_101210457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	528	Open in IMG/M
3300006174\|Ga0075014_100926595	Not Available	523	Open in IMG/M
3300006176\|Ga0070765_101068304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Pseudarthrobacter → unclassified Pseudarthrobacter → Pseudarthrobacter sp. AG30	763	Open in IMG/M
3300006176\|Ga0070765_102086560	Not Available	530	Open in IMG/M
3300006755\|Ga0079222_10474400	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300006804\|Ga0079221_10905152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	648	Open in IMG/M
3300007076\|Ga0075435_100177432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1799	Open in IMG/M
3300009839\|Ga0116223_10590739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. HBU206391	641	Open in IMG/M
3300010048\|Ga0126373_11671086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	701	Open in IMG/M
3300010048\|Ga0126373_12976935	Not Available	528	Open in IMG/M
3300010323\|Ga0134086_10258277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300010343\|Ga0074044_10440474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	852	Open in IMG/M
3300010361\|Ga0126378_10238066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Acidothermales → unclassified Acidothermales → Acidothermales bacterium	1910	Open in IMG/M
3300010361\|Ga0126378_12247044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella panacisegetis	622	Open in IMG/M
3300010361\|Ga0126378_12332464	Not Available	611	Open in IMG/M
3300010361\|Ga0126378_12691092	Not Available	568	Open in IMG/M
3300010362\|Ga0126377_13371868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300010366\|Ga0126379_10604130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300010376\|Ga0126381_101623347	Not Available	934	Open in IMG/M
3300010376\|Ga0126381_102336695	Not Available	768	Open in IMG/M
3300010398\|Ga0126383_10844125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1000	Open in IMG/M
3300010867\|Ga0126347_1573583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300010876\|Ga0126361_10776171	Not Available	679	Open in IMG/M
3300010876\|Ga0126361_10787984	Not Available	575	Open in IMG/M
3300011270\|Ga0137391_11517502	Not Available	515	Open in IMG/M
3300012285\|Ga0137370_11003916	Not Available	514	Open in IMG/M
3300012359\|Ga0137385_10682088	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300012948\|Ga0126375_11375887	Not Available	597	Open in IMG/M
3300014201\|Ga0181537_10714929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	681	Open in IMG/M
3300016270\|Ga0182036_11197094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300016341\|Ga0182035_10074928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2397	Open in IMG/M
3300016341\|Ga0182035_11938110	Not Available	535	Open in IMG/M
3300016387\|Ga0182040_10188015	Not Available	1508	Open in IMG/M
3300016445\|Ga0182038_10452858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	1087	Open in IMG/M
3300016750\|Ga0181505_10497077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	591	Open in IMG/M
3300017924\|Ga0187820_1213395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300017937\|Ga0187809_10186076	Not Available	732	Open in IMG/M
3300017970\|Ga0187783_10454809	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300017970\|Ga0187783_11088165	Not Available	576	Open in IMG/M
3300017973\|Ga0187780_10329169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis composta	1077	Open in IMG/M
3300017973\|Ga0187780_11456845	Not Available	505	Open in IMG/M
3300017995\|Ga0187816_10430240	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
3300018006\|Ga0187804_10037051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1863	Open in IMG/M
3300018007\|Ga0187805_10471613	All Organisms → cellular organisms → Bacteria → Terrabacteria group	587	Open in IMG/M
3300018060\|Ga0187765_11336729	Not Available	509	Open in IMG/M
3300020021\|Ga0193726_1204664	Not Available	828	Open in IMG/M
3300021088\|Ga0210404_10520806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300021181\|Ga0210388_10444183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica → Tetrasphaera japonica T1-X7	1140	Open in IMG/M
3300021401\|Ga0210393_11084979	Not Available	647	Open in IMG/M
3300021402\|Ga0210385_11331863	Not Available	550	Open in IMG/M
3300021404\|Ga0210389_10003858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces guanduensis	11691	Open in IMG/M
3300021406\|Ga0210386_10831799	Not Available	792	Open in IMG/M
3300021474\|Ga0210390_11547534	Not Available	523	Open in IMG/M
3300021474\|Ga0210390_11584006	Not Available	516	Open in IMG/M
3300021560\|Ga0126371_11273982	Not Available	869	Open in IMG/M
3300021560\|Ga0126371_11674803	Not Available	760	Open in IMG/M
3300022716\|Ga0242673_1026099	Not Available	867	Open in IMG/M
3300022720\|Ga0242672_1010802	Not Available	1102	Open in IMG/M
3300027109\|Ga0208603_1035563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	776	Open in IMG/M
3300027812\|Ga0209656_10232499	Not Available	880	Open in IMG/M
3300027855\|Ga0209693_10492469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. CC228A	587	Open in IMG/M
3300030007\|Ga0311338_10218766	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300030058\|Ga0302179_10012206	All Organisms → cellular organisms → Bacteria	4397	Open in IMG/M
3300030520\|Ga0311372_10130003	All Organisms → cellular organisms → Bacteria	4443	Open in IMG/M
3300031090\|Ga0265760_10044550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1328	Open in IMG/M
3300031233\|Ga0302307_10297955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	824	Open in IMG/M
3300031234\|Ga0302325_10678873	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1491	Open in IMG/M
3300031543\|Ga0318516_10888952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	502	Open in IMG/M
3300031544\|Ga0318534_10004518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	6453	Open in IMG/M
3300031544\|Ga0318534_10197949	Not Available	1160	Open in IMG/M
3300031544\|Ga0318534_10415587	Not Available	772	Open in IMG/M
3300031544\|Ga0318534_10543047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	662	Open in IMG/M
3300031668\|Ga0318542_10551978	Not Available	600	Open in IMG/M
3300031679\|Ga0318561_10077953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1710	Open in IMG/M
3300031682\|Ga0318560_10075966	Not Available	1704	Open in IMG/M
3300031682\|Ga0318560_10125084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1348	Open in IMG/M
3300031682\|Ga0318560_10614601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WM6378	588	Open in IMG/M
3300031708\|Ga0310686_100325786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	1080	Open in IMG/M
3300031713\|Ga0318496_10567148	Not Available	627	Open in IMG/M
3300031723\|Ga0318493_10263580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	923	Open in IMG/M
3300031723\|Ga0318493_10793156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M
3300031724\|Ga0318500_10233558	Not Available	888	Open in IMG/M
3300031744\|Ga0306918_10555179	Not Available	900	Open in IMG/M
3300031747\|Ga0318502_10124579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1451	Open in IMG/M
3300031747\|Ga0318502_10251929	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300031748\|Ga0318492_10010604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3759	Open in IMG/M
3300031748\|Ga0318492_10268030	Not Available	885	Open in IMG/M
3300031751\|Ga0318494_10281193	Not Available	958	Open in IMG/M
3300031768\|Ga0318509_10185489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1155	Open in IMG/M
3300031778\|Ga0318498_10415260	Not Available	597	Open in IMG/M
3300031779\|Ga0318566_10144784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1177	Open in IMG/M
3300031780\|Ga0318508_1134116	Not Available	699	Open in IMG/M
3300031793\|Ga0318548_10023443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2636	Open in IMG/M
3300031794\|Ga0318503_10163792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	718	Open in IMG/M
3300031795\|Ga0318557_10086921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1369	Open in IMG/M
3300031805\|Ga0318497_10579443	Not Available	629	Open in IMG/M
3300031819\|Ga0318568_10039741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	2673	Open in IMG/M
3300031819\|Ga0318568_10732209	Not Available	614	Open in IMG/M
3300031821\|Ga0318567_10243282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1010	Open in IMG/M
3300031831\|Ga0318564_10096326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1312	Open in IMG/M
3300031833\|Ga0310917_11142965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300031835\|Ga0318517_10072575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1479	Open in IMG/M
3300031897\|Ga0318520_10023662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2972	Open in IMG/M
3300031945\|Ga0310913_10200866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1392	Open in IMG/M
3300031947\|Ga0310909_10057602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3008	Open in IMG/M
3300031947\|Ga0310909_11165147	Not Available	624	Open in IMG/M
3300031962\|Ga0307479_10323378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1525	Open in IMG/M
3300032001\|Ga0306922_12323269	Not Available	514	Open in IMG/M
3300032008\|Ga0318562_10867394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300032010\|Ga0318569_10502114	Not Available	565	Open in IMG/M
3300032052\|Ga0318506_10078973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1378	Open in IMG/M
3300032068\|Ga0318553_10404521	Not Available	715	Open in IMG/M
3300032090\|Ga0318518_10457962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera australiensis → Tetrasphaera australiensis Ben110	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.23%
Host-Associated	Host-Associated	0.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.54%
Aquatic	Environmental → Aquatic	7.69%
Plants	Host-Associated → Plants	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.69%
Freshwater	Environmental → Aquatic → Freshwater	6.15%
Peat	Environmental → Terrestrial → Peat	3.85%
Sediment	Environmental → Aquatic → Sediment	1.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.46%
Loam	Environmental → Terrestrial → Soil → Loam	14.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.62%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.31%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.77%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062978

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1001171861	3300002245	Forest Soil	SGPMRLKLPVSPPALPVCHDDAGWCAASATFEHPQASLVLT*
JGIcombinedJ51221_100540331	3300003505	Forest Soil	GPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT*
JGIcombinedJ51221_101139151	3300003505	Forest Soil	GPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSRASLVLT*
JGIcombinedJ51221_103385492	3300003505	Forest Soil	LAVIPAATPRDSGPVRLNLPVSCPVLPVCHDDAGWCEGSSMFEHSPASLVLA*
Ga0066388_1072859701	3300005332	Tropical Forest Soil	PRDSGPVRLNLPVSCPVLPVCHDDAGWCVGSSTFGHAPASLVLT*
Ga0070710_102974881	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	APPRGPEPMRLGLPVSCPVLPVCHDDAGWCVGSSTSGQSPASLVLT*
Ga0070710_106881862	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PPRGPEPMRLGLPVSCPVLPVCHDDAGWCVGSSTSGQPPASLVLT*
Ga0070706_1011502271	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	TPRDSGPIRLNLPVSAPVLPVCHDDAGWCVESSQFEHSPASLVMT*
Ga0070698_1009610601	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	PRDSGPVRLNLPVSSPVLPVCHDDTGWCAGSSTFEHSPASLVLA*
Ga0070698_1018658842	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GPVRLNLPVSCPVVPVCHDDAGWCVGSSTFGRSPASLALT*
Ga0070730_101169623	3300005537	Surface Soil	VALVRLSLPVSCPVLPVCHDDAGWCVGSSTFEHSPASLVLA*
Ga0070733_101000893	3300005541	Surface Soil	VALVRLNLPVSCPVLPVCHDDAGWCVGSSTFEHSPASLVLA*
Ga0070696_1018243741	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	PAVTPRDSGPIRLNLPVSAPVLPVCHDDAGWCVGSSTFERSPASLVPALA*
Ga0070763_100021678	3300005610	Soil	AAPRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHTPASLVLT*
Ga0070764_100678323	3300005712	Soil	TPRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT*
Ga0066903_1008676693	3300005764	Tropical Forest Soil	TPRDSGPVRLNLPVSCPVLPVCHDDAGWCVGPSTSGHAPASLVLT*
Ga0070766_101904241	3300005921	Soil	AATPRDSGPVRLNLPVSCPVLRVCHDDAGWCAGSSTFEHSPASLVLA*
Ga0075029_1012104571	3300006052	Watersheds	PRDSGPMRLNLPVSPPGLVECHDDAGWCAVSSTFECSPASLVLT*
Ga0075014_1009265951	3300006174	Watersheds	SGPVRLNLPVSCPVLVVCHDDAGWCAGSGTSGHSPASLVLT*
Ga0070765_1010683041	3300006176	Soil	RDSGPVRLDLPAACPVMMVCHDDAGWCAEPSTSRRSPASLALV*
Ga0070765_1020865601	3300006176	Soil	PAPRDSGPVRLSLPVSSPVLPVCHDDAGWCAGSSTFEHSRASLVLT*
Ga0079222_104744001	3300006755	Agricultural Soil	LPVSAPVLPVCDDDAGWCMGASTFEHSPASLVLV*
Ga0079221_109051521	3300006804	Agricultural Soil	PRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT*
Ga0075435_1001774324	3300007076	Populus Rhizosphere	PRDSGPIRLNLPVSAPVLPVCHDDAGWCVGSSTFERSPASLVPALA*
Ga0116223_105907391	3300009839	Peatlands Soil	RDSGPVRLNLPVSPPVLPVCHDDAGWCAESSMSGHSPASLVLA*
Ga0126373_116710861	3300010048	Tropical Forest Soil	DSGPVRLNLPVSSPVLPVCHDDAGWCVGSGTLPRSPAPLVPA*
Ga0126373_129769351	3300010048	Tropical Forest Soil	KLPVSCPVLPVCHDDAGWCVGSSTLGHAPASLVLT*
Ga0134086_102582772	3300010323	Grasslands Soil	DSGPMRLNLPVSSPVLLVCHDDAGWCAGSSRFEHSPASLVLT*
Ga0074044_104404743	3300010343	Bog Forest Soil	GPVRLNLPVSPPVLPVCHDDAGWCAGPSMSGHSPASLVLA*
Ga0126378_102380665	3300010361	Tropical Forest Soil	SGPIRLNLPVSPAVLAVCHDDAGWCVGSSTVEHSPASLVMA*
Ga0126378_122470442	3300010361	Tropical Forest Soil	LAVVPAATPRDSGPVRLKLPVSSPVLPVYHDDAGWCVESSTFEHSPASLVLA*
Ga0126378_123324641	3300010361	Tropical Forest Soil	PGVRPCTPPDSGPVRLNLPLASPVLPVCHDDAGWCVGAGTFERSPAPLVLA*
Ga0126378_126910921	3300010361	Tropical Forest Soil	DSGPIRLNLPVSPAVLAVCHDDAGWCAGSSIVEHSPASLVMA*
Ga0126377_133718682	3300010362	Tropical Forest Soil	DSGPVRLSLPVSAPVLPVCHDDAGWCVEASTSGYSPASLVLA*
Ga0126379_106041301	3300010366	Tropical Forest Soil	LPVSSPALPVCHDDAGWCVESSTFEHSPAPLVLA*
Ga0126381_1016233471	3300010376	Tropical Forest Soil	NLPVSSPVLPVCHDDAGWCVEADTFDRSPGLVLA*
Ga0126381_1023366952	3300010376	Tropical Forest Soil	AVLPAAPRDSGPLRLNLPACSPVMPVCHDDAGWCVGSSTFEHSATPVLLT*
Ga0126383_108441252	3300010398	Tropical Forest Soil	RDSGPVRLDLPVSAPVLPMCHDDAGWCLASGTSGNSPAPLVLA*
Ga0126347_15735832	3300010867	Boreal Forest Soil	LPVRSAVLPMGHDDAGWCAGSAAFEHSPASLVLT*
Ga0126361_107761711	3300010876	Boreal Forest Soil	VVRAATPRDSGPVRLNLPVSSPVLPVCHDDAGWCAGSSMFEHSPASLVLA*
Ga0126361_107879842	3300010876	Boreal Forest Soil	SGPARLNLPVSAPVLPVCHDDAGWCTESSMFEDSPASLVLA*
Ga0137391_115175021	3300011270	Vadose Zone Soil	MRLNLPVSYPVLPVCHDDAGWCVGSSTFEHSPASLVLA*
Ga0137370_110039162	3300012285	Vadose Zone Soil	RDSGPVRLNLPVSCPVLPVYHDDAGWCMGSGTSGHSPASLVLA*
Ga0137385_106820883	3300012359	Vadose Zone Soil	RLNLPVSCPVLPVCHDDAGWCAGSSTVEHSPASLVLT*
Ga0126375_113758871	3300012948	Tropical Forest Soil	PRDSGPVRLNLPVSAPVLPVCHDDAGWCMGSSTFEHSPASLVLA*
Ga0181537_107149292	3300014201	Bog	RLKLPDSCPVLPVGHDDAGWCAEPSIFAPSPASLVLA*
Ga0182036_111970942	3300016270	Soil	ATPRDSGPVRLNLPVSCPVLPVCDDDAGWCLGSGTSEPSSASLVLV
Ga0182035_100749281	3300016341	Soil	TPRDSGPMRLNLPASPPVLQVCHDDAGWCAGSSTVEHAPASLVLT
Ga0182035_119381103	3300016341	Soil	SGPVRLNLPVSCPVLPLCHDDAGWCVGPSKSEYSPTSLVLA
Ga0182040_101880152	3300016387	Soil	LSLPVSPAVLAVCHDDAGWCAGSSIVEHSPAPLVMV
Ga0182038_104528583	3300016445	Soil	AVGPPPAPRDSGPVRLNLPVSARVLPVCDDDAGWCVGSSTFEPSPASLVLA
Ga0181505_104970772	3300016750	Peatland	MRLNLPVSSPVLPMCHDDAGWCVGSSTFEHSPASLVLA
Ga0187820_12133951	3300017924	Freshwater Sediment	PVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0187809_101860761	3300017937	Freshwater Sediment	APRDSGPIRLNLPVSSPVLPVGHDDAGWCAGSSTFEHSPDSLVLA
Ga0187783_104548091	3300017970	Tropical Peatland	VSSPVLPVCHDDAGWCVESSAFSAFEHSPASLVLA
Ga0187783_110881652	3300017970	Tropical Peatland	GPIRLSLPVSAPVLPMLHDDAGWCVETSRLERSPETLVLA
Ga0187780_103291693	3300017973	Tropical Peatland	RDSGPVRLNLPVSAPVLPVCHDDAGWCAGSSTVEHSPASLVLA
Ga0187780_114568451	3300017973	Tropical Peatland	VPAATPRDSGPVRLNLPVSCPALPVCHDDAGWCAGSSTFEHSSASLVLT
Ga0187816_104302402	3300017995	Freshwater Sediment	LNLPVSCPVLPVCHDDAGWCAGSSTFEHSSASLVLT
Ga0187804_100370514	3300018006	Freshwater Sediment	SGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0187805_104716132	3300018007	Freshwater Sediment	RDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSSASLVLT
Ga0187765_113367291	3300018060	Tropical Peatland	IRLKLPVSCPVLPMDHDDAGWCARSAAFEPSPASLVLA
Ga0193726_12046641	3300020021	Soil	VRLNLPVSPAVLPVCHDDAGWCADLSAPERSPAALVLA
Ga0210404_105208061	3300021088	Soil	LNLPVSSPVLLVRHDDAGWCAGSSTFEHSPASLVLA
Ga0210388_104441831	3300021181	Soil	ATPRDSGPVRLNLPVSCPVLPVCHDDAGWYAGSSTFEHSPASLVLT
Ga0210393_110849792	3300021401	Soil	PVRLTLPASCPVMLMRHDDAGWCAEPSTSTRSLASLVLV
Ga0210385_113318631	3300021402	Soil	AAPRDSGPVRLNLPVSAPVLPVCHDDAGWCVESHLPGHSPASLVLA
Ga0210389_100038581	3300021404	Soil	LNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0210386_108317991	3300021406	Soil	RDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0210390_115475341	3300021474	Soil	IVPAAAPRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHTPASLVLT
Ga0210390_115840061	3300021474	Soil	AEPRDSGPVRLNLPVSSPVLPVCHDDAGWCAASCTFERSPASLVLT
Ga0126371_112739822	3300021560	Tropical Forest Soil	RPAAPRDSGPIRLNLPVSAPVVPMCHDDAGWCVGTSTFQHAPASLILA
Ga0126371_116748032	3300021560	Tropical Forest Soil	NLPGSPPVLPVCHDDAGWCMGSSPSVHSPASLVLT
Ga0242673_10260991	3300022716	Soil	RDSGPVRLNLPVSSPVLPVCDDDAGWCVEFSTLEHSPASLVPA
Ga0242672_10108022	3300022720	Soil	PVRLNLPVSSPVLPVCDDDAGWCAEFSTLEHSPASLVLT
Ga0208603_10355632	3300027109	Forest Soil	RLNLPVSCPVLPVCHDDAGWCEGSSMFEHSPASLVLA
Ga0209656_102324991	3300027812	Bog Forest Soil	LAIVPAATPRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0209693_104924691	3300027855	Soil	LAVLLAAAPRDSGPVRLNLPVSAPVLPVCHDDAGWCVESHLPGHSPASLVLA
Ga0311338_102187663	3300030007	Palsa	GPVRLNLPVWSPVLPVCHDDAGWCAGSSTFGPSPESLVLA
Ga0302179_100122064	3300030058	Palsa	VRPAATPRDSGPVRLNLPVSSPVLPVCHDDAGWCVGSSVPGPAPASLVLA
Ga0311372_101300031	3300030520	Palsa	TPRDSGPVWLNLPVSSPVLPVCHDDAGWCVGSSVPGPAPASLVLA
Ga0265760_100445501	3300031090	Soil	RLNLPVSCPVLPVCHDDAGWCAESGMFEHSSASLVLA
Ga0302307_102979551	3300031233	Palsa	ATPRDSGPVRLNLPVSSPVLPVCHDDAGWCVGSSVPGPAPASLVLA
Ga0302325_106788732	3300031234	Palsa	SGPVRLNLPVWSPVLPVCHDDAGWCAGSSTFGPSPESLVLA
Ga0318516_108889522	3300031543	Soil	HGSGPIRLDLPVSAPVLPMCHDDPGWCMESSTTEHARASLVLI
Ga0318534_100045182	3300031544	Soil	LAGLWVVWAQPVRLNLPVSAPVLTVCHDDAGWCAGPSTFERPPASLVLA
Ga0318534_101979493	3300031544	Soil	PAATPHDSGPVRLKLPVSCPVLPVCHDDAGWCVGSSTLGHAPASLVLT
Ga0318534_104155872	3300031544	Soil	ITPGTPRDSGPIRLSLPVSAPALPVGHDDAGWCAGSSPVEHAGALVLA
Ga0318534_105430471	3300031544	Soil	AATPRDSGPMRLNLPASPAVLQVCHDDAGWCAGSSTFEHAPASLVLT
Ga0318542_105519781	3300031668	Soil	VGGVAQPVRLNLPVSAPVLTVCHDDAGWCAGPSTFERPPASLVLA
Ga0318561_100779534	3300031679	Soil	PAATPHGSGPIRLDLPVSAPVLPMCHDDPGWCMESSTTEHARASLVLI
Ga0318560_100759663	3300031682	Soil	RDSGPVRLKLPVSSPVLPVCHDDAGWCVGSSTVEHSPASLVLT
Ga0318560_101250841	3300031682	Soil	ATPRDSGPMRLNLPASPAVLQVCHDDAGWCAGSSTFEHAPASLVLT
Ga0318560_106146012	3300031682	Soil	RDSGPVRLNLPVSCPVLPVCDDDAGWCLGSGTSEPSSASLVLV
Ga0310686_1003257862	3300031708	Soil	MRLNLPVSSPVLLVCDDDAGWCAGSSTFEHSPASLILT
Ga0318496_105671481	3300031713	Soil	VGGVAQPVRLNLPVSAPVLTVCHDDAGRCAGPSTFE
Ga0318493_102635803	3300031723	Soil	TPHGSGPIRLDLPVSAPVLPMCHDDPGWCIESSTTEHARASLVLI
Ga0318493_107931562	3300031723	Soil	RDSGPIRLNLPVSAPVLPMCHDDAGWCVGSSTFEPSPASLVLA
Ga0318500_102335582	3300031724	Soil	AGPVRLNLPVSCPVLPVCHDDAGWCAGSSRSEHTTASLVLT
Ga0306918_105551791	3300031744	Soil	VPAAAPRDSGPVRLNLPVSCPVLPLCHDDAGWCVGPSKSEYSPTSLVLA
Ga0318502_101245791	3300031747	Soil	NLPVSCPVLPVCHDDAGWCAGSSRSEHTTASLVLT
Ga0318502_102519291	3300031747	Soil	LAVVPAVAPRDSGPIRLNLPVSAPVLPVCHDDAGWCVGSSTFEPSPASLVLA
Ga0318492_100106042	3300031748	Soil	VGGVAQPVRLNLPVSAPVLPVCHDDAGWCAGPSTFERPPASLVLA
Ga0318492_102680301	3300031748	Soil	GPVRLNLPVSCPVLPVCHDDAGWCAGSSRSEHTTASLVPA
Ga0318494_102811931	3300031751	Soil	AVVPAAAPRDSGPVRLKLPVSSPVLPVRHDDAGWCVGSSTVEHSPASLVLT
Ga0318509_101854893	3300031768	Soil	GSGPVRLNLPVSCPVLPVCHDDAGWCAGSSRSEHTTASLVLT
Ga0318498_104152602	3300031778	Soil	TPHDSGPIRLNLPVSPPVLPVCHDDAGWCAGSGTFERSPAALVLT
Ga0318566_101447842	3300031779	Soil	PMRLNLPASPAVLQVCHDDAGWCAGSSTFEHAPASLVLT
Ga0318508_11341162	3300031780	Soil	VGGVAQPVRLNLPVSAPVLPMCHDDAGWCVASSTAERPPASLVMT
Ga0318548_100234431	3300031793	Soil	VGGVAQPVRLNLPVSAPVLTVCHDDAGRCAGPSTFERPPASLVL
Ga0318503_101637921	3300031794	Soil	AGPVRLNLPVPCPVLPVCHDDAGWCVGSSTFEHSPASLVLT
Ga0318557_100869212	3300031795	Soil	LSLPASPTVLQVCHDDAGWCAGSSTVEHAPASLVLT
Ga0318497_105794431	3300031805	Soil	HDSGPIRLNLPVSPPVLPVCHDDAGWCAGSGTFERSPAALVLT
Ga0318568_100397413	3300031819	Soil	VRAATPRDSGPMRLNLPASPAVLQVCHDDAGWCAGSSTVEHAPASLVLT
Ga0318568_107322092	3300031819	Soil	PRDSGPIRLSLPVSAPALPVGHDDAGWCAGSSPVEHAGALVLA
Ga0318567_102432823	3300031821	Soil	DSGPVRLNLPVSCPVLPVCDDDAGWCLGSGTSEPSSASLVLV
Ga0318564_100963263	3300031831	Soil	ATPHGSGPIRLDLPVSAPVLPMCHDDPGWCIESSTTEHARASLVLI
Ga0310917_111429652	3300031833	Soil	VRLNLPVSCPVLPVCDDDAGWCLGSGTSEPSSASLVLV
Ga0318517_100725752	3300031835	Soil	RDSGPIRLNLPLSPAVLAMCHDDAGWCVASSTAERPPASLVMT
Ga0318520_100236622	3300031897	Soil	LAGLWVVWAQPVRLNLPVSAPVLTVCHDDAGRCAGPSTFERPPASLVLA
Ga0310913_102008663	3300031945	Soil	ATPHGSGPIRLDLPVSAPVLPMCHDDPGWCMESSTTEHARASLVLI
Ga0310909_100576021	3300031947	Soil	NLPVSCPVLPVCHDDAGWCVGSSTFGHSPASLVLT
Ga0310909_111651471	3300031947	Soil	AATPRGSGPVRLNLPVSCPVLPVCHDDAGWCAGSSRSEHTTASLVLT
Ga0307479_103233781	3300031962	Hardwood Forest Soil	APRDSGPVRLNLPVSCPVLPVCHDDAGWCAGSSTFEHSPASLVLT
Ga0306922_123232691	3300032001	Soil	VRLNLPVSCPVLPVCHDDAGWCAGSSAFEHSPESLVLT
Ga0318562_108673942	3300032008	Soil	DSGPMRLNLPASPTVLQVCHDDAGWCAGSSTVEHAPASLVLT
Ga0318569_105021142	3300032010	Soil	VWAQPVRLNLPVSAPVLTVCHDDAGWCAGPSTFERPPASLVLA
Ga0318506_100789731	3300032052	Soil	NLPLSPAVLAMCHDDAGWCVASSTAERPPASLVMT
Ga0318553_104045211	3300032068	Soil	PHDSGPIRLKLPVSCPVLPMDHDDAGWCARSSTFEPSPASLVRA
Ga0318518_104579622	3300032090	Soil	RLKLPVSSPVLPVCHDDAGWCVGSSTVEHSPASLVLT

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign