Metagenome / Metatranscriptome Family F063007

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063007
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	92 residues
Representative Sequence	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Number of Associated Samples	113
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.23 %
% of genes near scaffold ends (potentially truncated)	26.15 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.615 % of family members)
Environment Ontology (ENVO)	Unclassified (23.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.61% β-sheet: 9.68% Coil/Unstructured: 38.71%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF04392	ABC_sub_bind	6.15
PF02518	HATPase_c	1.54
PF13545	HTH_Crp_2	0.77
PF10098	DUF2336	0.77
PF01548	DEDD_Tnp_IS110	0.77
PF00027	cNMP_binding	0.77
PF00589	Phage_integrase	0.77
PF07883	Cupin_2	0.77
PF00579	tRNA-synt_1b	0.77
PF13231	PMT_2	0.77
PF11391	DUF2798	0.77
PF12680	SnoaL_2	0.77
PF13751	DDE_Tnp_1_6	0.77
PF06537	DHOR	0.77
PF01841	Transglut_core	0.77
PF13358	DDE_3	0.77
PF13185	GAF_2	0.77
PF09361	Phasin_2	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.15
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.77
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.77
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.38 %
Unclassified	root	N/A	44.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.38 %
Unclassified	root	N/A	44.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.38 %
Unclassified	root	N/A	44.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.62 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	31.54 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.77 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	28.46 %
Enhydrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.08 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.08 %
Bradyrhizobium quebecense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense	2.31 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.54 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.77 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.77 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.77 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.62 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.08 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	2.31 %
Bradyrhizobium quebecense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense	2.31 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.54 %
Bradyrhizobium sp. CCGUVB1N3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	0.77 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.77 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.77 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.77 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.77 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100575823	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100575953	Not Available	527	Open in IMG/M
3300000567\|JGI12270J11330_10123032	Not Available	1051	Open in IMG/M
3300001661\|JGI12053J15887_10276187	Not Available	828	Open in IMG/M
3300001867\|JGI12627J18819_10016923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2945	Open in IMG/M
3300002245\|JGIcombinedJ26739_101122759	Not Available	674	Open in IMG/M
3300002245\|JGIcombinedJ26739_101774554	Not Available	517	Open in IMG/M
3300004104\|Ga0058891_1584772	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300004140\|Ga0058894_1431932	Not Available	614	Open in IMG/M
3300004152\|Ga0062386_100602359	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300004631\|Ga0058899_12141563	Not Available	658	Open in IMG/M
3300005328\|Ga0070676_10494381	Not Available	867	Open in IMG/M
3300005340\|Ga0070689_100631954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	930	Open in IMG/M
3300005434\|Ga0070709_10522659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300005434\|Ga0070709_10730397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	772	Open in IMG/M
3300005435\|Ga0070714_100063091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3185	Open in IMG/M
3300005435\|Ga0070714_100492169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense	1168	Open in IMG/M
3300005435\|Ga0070714_100553559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1101	Open in IMG/M
3300005436\|Ga0070713_101140639	Not Available	754	Open in IMG/M
3300005437\|Ga0070710_11378010	Not Available	526	Open in IMG/M
3300005439\|Ga0070711_101868137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	527	Open in IMG/M
3300005440\|Ga0070705_101168434	Not Available	633	Open in IMG/M
3300005467\|Ga0070706_100165882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2062	Open in IMG/M
3300005471\|Ga0070698_100531513	Not Available	1114	Open in IMG/M
3300005529\|Ga0070741_10724685	Not Available	875	Open in IMG/M
3300005536\|Ga0070697_100986468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense	749	Open in IMG/M
3300005547\|Ga0070693_100346845	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005614\|Ga0068856_100573383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1150	Open in IMG/M
3300005615\|Ga0070702_100412696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	969	Open in IMG/M
3300005617\|Ga0068859_100471594	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300006050\|Ga0075028_100179457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1133	Open in IMG/M
3300006052\|Ga0075029_100821521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	633	Open in IMG/M
3300006057\|Ga0075026_100405185	Not Available	768	Open in IMG/M
3300006059\|Ga0075017_100833784	Not Available	714	Open in IMG/M
3300006086\|Ga0075019_10156418	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300006173\|Ga0070716_101019347	Not Available	655	Open in IMG/M
3300006174\|Ga0075014_100474812	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300006174\|Ga0075014_100560323	Not Available	648	Open in IMG/M
3300006175\|Ga0070712_100903326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	761	Open in IMG/M
3300006175\|Ga0070712_101376504	Not Available	615	Open in IMG/M
3300006804\|Ga0079221_11090075	Not Available	610	Open in IMG/M
3300006854\|Ga0075425_100249878	All Organisms → cellular organisms → Bacteria → Proteobacteria	2040	Open in IMG/M
3300006854\|Ga0075425_100257283	Not Available	2009	Open in IMG/M
3300006854\|Ga0075425_100993761	Not Available	957	Open in IMG/M
3300006871\|Ga0075434_101648003	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300006914\|Ga0075436_100623230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	796	Open in IMG/M
3300007265\|Ga0099794_10255030	Not Available	905	Open in IMG/M
3300009143\|Ga0099792_10506000	Not Available	757	Open in IMG/M
3300009174\|Ga0105241_10847050	Not Available	845	Open in IMG/M
3300009177\|Ga0105248_13223417	Not Available	519	Open in IMG/M
3300009551\|Ga0105238_10621530	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300009700\|Ga0116217_10298671	Not Available	1035	Open in IMG/M
3300009824\|Ga0116219_10438730	Not Available	726	Open in IMG/M
3300010371\|Ga0134125_12718992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	538	Open in IMG/M
3300010375\|Ga0105239_10919810	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300010396\|Ga0134126_11877050	Not Available	656	Open in IMG/M
3300010399\|Ga0134127_12957707	Not Available	554	Open in IMG/M
3300010401\|Ga0134121_10650672	All Organisms → cellular organisms → Bacteria → Proteobacteria	993	Open in IMG/M
3300010401\|Ga0134121_10876722	Not Available	869	Open in IMG/M
3300010403\|Ga0134123_13380595	Not Available	515	Open in IMG/M
3300011120\|Ga0150983_11751187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense	536	Open in IMG/M
3300011120\|Ga0150983_12171221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2899	Open in IMG/M
3300011120\|Ga0150983_14958898	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300012200\|Ga0137382_10118067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1770	Open in IMG/M
3300012361\|Ga0137360_10142148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1893	Open in IMG/M
3300012951\|Ga0164300_10125826	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300012957\|Ga0164303_10913083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	616	Open in IMG/M
3300012960\|Ga0164301_10180801	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300012984\|Ga0164309_10075799	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300012984\|Ga0164309_11604365	Not Available	557	Open in IMG/M
3300012987\|Ga0164307_10830383	Not Available	737	Open in IMG/M
3300012988\|Ga0164306_10228361	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300012989\|Ga0164305_10396675	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300013296\|Ga0157374_10047773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3969	Open in IMG/M
3300014164\|Ga0181532_10039347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3203	Open in IMG/M
3300014165\|Ga0181523_10072643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2095	Open in IMG/M
3300014745\|Ga0157377_10899879	Not Available	661	Open in IMG/M
3300014968\|Ga0157379_10399727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1263	Open in IMG/M
3300015372\|Ga0132256_101498145	Not Available	785	Open in IMG/M
3300015373\|Ga0132257_102681616	Not Available	649	Open in IMG/M
3300020199\|Ga0179592_10010485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4004	Open in IMG/M
3300020579\|Ga0210407_10347287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	1160	Open in IMG/M
3300020580\|Ga0210403_10833149	Not Available	731	Open in IMG/M
3300020580\|Ga0210403_11203158	Not Available	583	Open in IMG/M
3300021168\|Ga0210406_10062633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3221	Open in IMG/M
3300021168\|Ga0210406_10091377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2593	Open in IMG/M
3300021170\|Ga0210400_10382717	All Organisms → cellular organisms → Bacteria → Proteobacteria	1160	Open in IMG/M
3300021178\|Ga0210408_10671717	Not Available	817	Open in IMG/M
3300021181\|Ga0210388_10437381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1150	Open in IMG/M
3300021401\|Ga0210393_10121677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2086	Open in IMG/M
3300021405\|Ga0210387_10076643	All Organisms → cellular organisms → Bacteria	2749	Open in IMG/M
3300021420\|Ga0210394_10841218	Not Available	800	Open in IMG/M
3300021432\|Ga0210384_10358139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	1314	Open in IMG/M
3300021445\|Ga0182009_10195731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	982	Open in IMG/M
3300021475\|Ga0210392_10415345	Not Available	982	Open in IMG/M
3300021479\|Ga0210410_10420823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1196	Open in IMG/M
3300022527\|Ga0242664_1109675	Not Available	575	Open in IMG/M
3300025905\|Ga0207685_10058070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1521	Open in IMG/M
3300025906\|Ga0207699_10463120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300025907\|Ga0207645_10866098	Not Available	614	Open in IMG/M
3300025910\|Ga0207684_10562518	Not Available	975	Open in IMG/M
3300025922\|Ga0207646_11136434	Not Available	686	Open in IMG/M
3300025929\|Ga0207664_11259571	Not Available	658	Open in IMG/M
3300025939\|Ga0207665_11358916	Not Available	566	Open in IMG/M
3300026078\|Ga0207702_10448938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1251	Open in IMG/M
3300026557\|Ga0179587_10439751	Not Available	852	Open in IMG/M
3300027061\|Ga0209729_1001718	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300027071\|Ga0209214_1018030	Not Available	893	Open in IMG/M
3300027548\|Ga0209523_1028063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1120	Open in IMG/M
3300027641\|Ga0208827_1169541	Not Available	596	Open in IMG/M
3300027645\|Ga0209117_1163506	Not Available	576	Open in IMG/M
3300027663\|Ga0208990_1139198	Not Available	648	Open in IMG/M
3300027727\|Ga0209328_10232189	Not Available	553	Open in IMG/M
3300027910\|Ga0209583_10126601	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300027911\|Ga0209698_10232465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	1478	Open in IMG/M
3300027915\|Ga0209069_10580705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	643	Open in IMG/M
3300028047\|Ga0209526_10082084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2270	Open in IMG/M
3300031057\|Ga0170834_100345864	Not Available	627	Open in IMG/M
3300031128\|Ga0170823_16821611	Not Available	618	Open in IMG/M
3300031231\|Ga0170824_102150184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1074	Open in IMG/M
3300031231\|Ga0170824_113731834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	648	Open in IMG/M
3300031474\|Ga0170818_101920431	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300031474\|Ga0170818_110306148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1472	Open in IMG/M
3300031715\|Ga0307476_11003903	Not Available	614	Open in IMG/M
3300031716\|Ga0310813_11511835	Not Available	625	Open in IMG/M
3300031720\|Ga0307469_11776271	Not Available	596	Open in IMG/M
3300032205\|Ga0307472_100857977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	836	Open in IMG/M
3300032828\|Ga0335080_11134580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	789	Open in IMG/M
3300032954\|Ga0335083_10508497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1007	Open in IMG/M
3300033475\|Ga0310811_10044326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5933	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.38%
Host-Associated	Host-Associated	14.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.38%
Plants	Host-Associated → Plants	14.62%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.54%
Sediment	Environmental → Aquatic → Sediment	7.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.08%
Freshwater	Environmental → Aquatic → Freshwater	2.31%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.31%
Loam	Environmental → Terrestrial → Soil → Loam	31.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.62%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.77%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.77%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004140	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF224 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1005758231	3300000364	Soil	MNPQERXTXLGTRXXKYXIGEDELLREXGNLQHAFDGVEREANYXEKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
INPhiseqgaiiFebDRAFT_1005759532	3300000364	Soil	MNPQERLTLLGTRISKYXIGEDELLREXGXLQXAFDGXEREANYREKVGXAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
JGI12270J11330_101230322	3300000567	Peatlands Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREAAYREKVGAAVEWGKIYLNPLKSAKYSGGREQVRGFLLQDLASAAKIAGDVM*
JGI12053J15887_102761872	3300001661	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
JGI12627J18819_100169233	3300001867	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVERKADYREKIDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
JGIcombinedJ26739_1011227592	3300002245	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVERDANYREKIDAAVEWGKIYLNPLKSEKYSGGREEVRGFLLQDLASAAKIAGDIM*
JGIcombinedJ26739_1017745541	3300002245	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVCAAVEWGKIYLNPLKSVNYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0058891_15847724	3300004104	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0058894_14319321	3300004140	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0062386_1006023591	3300004152	Bog Forest Soil	NPQERLTLLGTRISKYDIGEDELLRELGKLQHAFDGVEREANYREKVGAAVEWGKIYLNPQKSVKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0058899_121415632	3300004631	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIYAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0070676_104943811	3300005328	Miscanthus Rhizosphere	MNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070689_1006319542	3300005340	Switchgrass Rhizosphere	LTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070709_105226592	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070709_107303971	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGKRIRKYDIAEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070714_1000630914	3300005435	Agricultural Soil	MDPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070714_1004921693	3300005435	Agricultural Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKVGSAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0070714_1005535592	3300005435	Agricultural Soil	MNPQERLTLLGTRIHKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070713_1011406391	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKPQERLTLLGTRIRTYDIGEDELLRELGNLQPAFDGGEREANYREKVGAAVQWGKIYLNPVKSEKYSGGREQVRGFLLQDLASAAKIAGDITWRR*
Ga0070710_113780102	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFL
Ga0070711_1018681371	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ERLTSLGTRIRKYDIGEDELLRELGKLKPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070705_1011684341	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	QAPRSERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0070706_1001658822	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0070698_1005315133	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0070741_107246852	3300005529	Surface Soil	MNPQERLTLLGTRISKYDIGEDELLRELGKLQAAFDGGEREASYREKVGAAVEWGKIYLNPLKSDKYSGGREQVRGFLLQDLASAAKIAGDIK*
Ga0070697_1009864681	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKVGSAVEWGKIYLNPLKSEKYSGGREQVRGFL
Ga0070693_1003468451	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RIRKYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0068856_1005733832	3300005614	Corn Rhizosphere	MNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070702_1004126962	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0068859_1004715941	3300005617	Switchgrass Rhizosphere	ERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0075028_1001794573	3300006050	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVGAAVEWGKIYLNPLKSKKYSGGREQVRGFLLQDLALAAEIAGDVM*
Ga0075029_1008215212	3300006052	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGDVI*
Ga0075026_1004051851	3300006057	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAANIAGDIA*
Ga0075017_1008337842	3300006059	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVNAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0075019_101564182	3300006086	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGDVM*
Ga0070716_1010193472	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRNYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0075014_1004748121	3300006174	Watersheds	DGISNRWRFRMNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSGKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0075014_1005603232	3300006174	Watersheds	MNPQERLTLLGTRIRKYDIGEAELLRELGKLQPAFDGVEGEATYREKVNAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0070712_1009033261	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALA
Ga0070712_1013765041	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKTYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0079221_110900751	3300006804	Agricultural Soil	MNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIMFILADEK*
Ga0075425_1002498783	3300006854	Populus Rhizosphere	MNPQERLTLLGTRIRKYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0075425_1002572832	3300006854	Populus Rhizosphere	MNPQERLTLLGTRIRNYDIGEDELLRELGKLQPAFDGVEREATYREKIDAAVEWGRIYLNPLKSEKYSGGREQVRGFLLQDLVSAAKIAGDIM*
Ga0075425_1009937612	3300006854	Populus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLKDLASAAKIAGDIM*
Ga0075434_1016480031	3300006871	Populus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLK
Ga0075436_1006232301	3300006914	Populus Rhizosphere	MNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0099794_102550302	3300007265	Vadose Zone Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEAEATYREKVDAAVKWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0099792_105060001	3300009143	Vadose Zone Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVGWGKIYLNPLKSEKYSGGREQVRRFLLQDLVLAAKIAGDIM*
Ga0105241_108470501	3300009174	Corn Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVGREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0105248_132234171	3300009177	Switchgrass Rhizosphere	RKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0105238_106215302	3300009551	Corn Rhizosphere	MNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0116217_102986711	3300009700	Peatlands Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREAAYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDVM*
Ga0116219_104387302	3300009824	Peatlands Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREANYREKVGAAVEWGKIYLNPLKYENYSGGREQVRGFLLQDLASAAKIAGDVM*
Ga0134125_127189922	3300010371	Terrestrial Soil	LTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLKDLASAAKIAGDIM*
Ga0105239_109198102	3300010375	Corn Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0134126_118770501	3300010396	Terrestrial Soil	MNPQERLTLLGTRIRNYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRVFLLQDLSSAAKIAGDIM*
Ga0134127_129577071	3300010399	Terrestrial Soil	GADGISNRWRFRMNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0134121_106506723	3300010401	Terrestrial Soil	MNPQERLTLLGTRIRNYDIGEDELLRELRKLQPAFDGVEREATYREKIDAAVEWGRIYLNPLKSEKYSGGREQVRGFLLQDLVSAAKIAGDIM*
Ga0134121_108767221	3300010401	Terrestrial Soil	MNPQERLTSLGTRIRKYDIGEDELLRESGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0134123_133805951	3300010403	Terrestrial Soil	MNPQERLTLLGTRIRNYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0150983_117511871	3300011120	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKVGSAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLAS
Ga0150983_121712215	3300011120	Forest Soil	MNPLERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVGREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0150983_149588981	3300011120	Forest Soil	RIRKYDIGEDELLRELGKLQPAFDGVERDANYREKIDAAVEWGKIYLNPLKSEKYSGGREEVRGFLLQDLASAAKIAGDIM*
Ga0137382_101180672	3300012200	Vadose Zone Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLVLAAKIAGDIM*
Ga0137360_101421482	3300012361	Vadose Zone Soil	MNPQERLTLLGTRIRKYDIGEDELSRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0164300_101258262	3300012951	Soil	MNPQERLKLLGTRIRKYDIGEDELLRELVKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0164303_109130832	3300012957	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREANYREKVGAAVEWGKIYLNPLKSVKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0164301_101808012	3300012960	Soil	MNPQERLTLLGKRIRKYDIAEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIVGDIM*
Ga0164309_100757992	3300012984	Soil	RIRKYDIAEDELLRELGKLQPAFDGVEGEATYREKVNAAVEWGKTYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0164309_116043651	3300012984	Soil	MNPQERLTLLGTRISKYDIGEDELLRELGNLQHAFDGVEREANYREKVGAAVEWGKIYLNPLKSVKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0164307_108303831	3300012987	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSVKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0164306_102283612	3300012988	Soil	MDPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKVGSAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0164305_103966752	3300012989	Soil	RMNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVDGEATYREKVDAAVEWGKIYLNPLKSVKYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0157374_100477732	3300013296	Miscanthus Rhizosphere	MEIYNNPQERLTSLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYKEKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0181532_100393471	3300014164	Bog	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKYENYSGGREQVRGFLLQDLASAAKIAGDIM*
Ga0181523_100726432	3300014165	Bog	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKYENYSGGREQVRGFLLQDLASAAKLAGDIM*
Ga0157377_108998792	3300014745	Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDSVRR*
Ga0157379_103997272	3300014968	Switchgrass Rhizosphere	LTSLGTRIRKYDIGEDELLRELGKLKPAFDGVEGEATYKEKVDAAIEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM*
Ga0132256_1014981452	3300015372	Arabidopsis Rhizosphere	MNPQERLTLLGTRIRKYDIGEEELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIK*
Ga0132257_1026816162	3300015373	Arabidopsis Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREATYREKIDAAVEWGKIYLNPLKSDKYSGGREQVRGFLLQDLASAAKIAGDIV*
Ga0179592_100104856	3300020199	Vadose Zone Soil	LLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVGWGKIYLNPLKSEKYSGGREQVRRFLLQDLVLAAKIAGDIM
Ga0210407_103472872	3300020579	Soil	MNPQERLKLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV
Ga0210403_108331492	3300020580	Soil	MNPQERLKLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQ
Ga0210403_112031581	3300020580	Soil	CRMNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0210406_100626334	3300021168	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVCAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGD
Ga0210406_100913773	3300021168	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREGNYREKVGAAVEWGKIYLNPLKSVNYSGGREQVRGFLLQDLASAAKIAGDIK
Ga0210400_103827172	3300021170	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGD
Ga0210408_106717172	3300021178	Soil	MNPQERLTLLGTRIRKYDIGEDELSRELGKLQPAFDGVEREAAYREKVCAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGD
Ga0210388_104373811	3300021181	Soil	MDPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVGGFLLQDLALAAKIAGDIM
Ga0210393_101216772	3300021401	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0210387_100766435	3300021405	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV
Ga0210394_108412182	3300021420	Soil	MLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALA
Ga0210384_103581392	3300021432	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV
Ga0182009_101957312	3300021445	Soil	VSMNDDGSPLLDLMNGIVCNQAISNKWRFRMNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0210392_104153451	3300021475	Soil	MNPLERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIA
Ga0210410_104208232	3300021479	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0242664_11096751	3300022527	Soil	LLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0207685_100580703	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGKRIRKYDIAEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0207699_104631202	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0207645_108660981	3300025907	Miscanthus Rhizosphere	LTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0207684_105625181	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0207646_111364342	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	CRMNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRVFLLQDLSSAAKIAGDIM
Ga0207664_112595711	3300025929	Agricultural Soil	MNPQERLTLLGTRIHKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAK
Ga0207665_113589161	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV
Ga0207702_104489381	3300026078	Corn Rhizosphere	MNDDGSPLLDLMNGIVCIQAISNKWRFRMNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDI
Ga0179587_104397512	3300026557	Vadose Zone Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVGWGKIYLNPLKSEKYSGGREQVRRFLLQDLVLAAKIAGDIM
Ga0209729_10017183	3300027061	Forest Soil	NPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASEADAARHGD
Ga0209214_10180302	3300027071	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVERKADYREKIDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0209523_10280632	3300027548	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVERKADYREKIDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIA
Ga0208827_11695411	3300027641	Peatlands Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREAAYREKVGAAVEWGKIYLNPLKSAKYSGGREQVRGFLLQDLASAAKIAGDVM
Ga0209117_11635062	3300027645	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRVFLLQDLASAAKIAGDIK
Ga0208990_11391982	3300027663	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREANYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0209328_102321891	3300027727	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVCAAVEWGKIYLNPLKSVNYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0209583_101266012	3300027910	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVNAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGDVM
Ga0209698_102324652	3300027911	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVGAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAEIAGDVM
Ga0209069_105807052	3300027915	Watersheds	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAAYREKVGAAVEWGKIYLNPLKSKKYSGGREQVRGFLLQDLALAAEIAGDVI
Ga0209526_100820843	3300028047	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVERDANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0170834_1003458641	3300031057	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQHAFDGVEREGNYREKVGAAVEWGKIYLNPLKSVNYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0170823_168216111	3300031128	Forest Soil	MNPQERLTLLGTRIRKYDFGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0170824_1021501841	3300031231	Forest Soil	MNPQERLTLLGTRIHKYDIGEDELLRELGKLQPAFDGVGGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKI
Ga0170824_1137318341	3300031231	Forest Soil	TRGADGISNRWRFRMNPQERLTLLGTRIRKYDIGEDELLRELANLQHAFDGVEREGNYREKVGAAVEWGKIYLNPLKSVNYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0170818_1019204312	3300031474	Forest Soil	MDPQERLTLLGTRIRKYDIGEDELLRELGKLQSAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGGIM
Ga0170818_1103061483	3300031474	Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELANLQHAFDGVEREGNYREKVGAAVEWGKIYLNPLKSVNYSGGREQVRGLLLQDLASAAKIAGDIM
Ga0307476_110039031	3300031715	Hardwood Forest Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEGEATYREKVDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLAFAAKIAGDIM
Ga0310813_115118351	3300031716	Soil	MNPQERLTSLGTRIRKYDIGEDELLRELGKLKPAFDGVEGEATYKEKVDAAIEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0307469_117762711	3300031720	Hardwood Forest Soil	MDPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGVEREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLALAAKIAGDIM
Ga0307472_1008579773	3300032205	Hardwood Forest Soil	RLTLLGTRIRKELGKLQPAFDGVGREANYREKIDAAVEWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIV
Ga0335080_111345801	3300032828	Soil	SNRWRCRMNPQEQLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAVYREKIDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0335083_105084972	3300032954	Soil	MNPQEQLTLLGTRIRKYDIGEDELLRELGKLQPAFDGVEREAVYREKIDAAVGWGKIYLNPLKSEKYSGGREQVRGFLLQDLASAAKIAGDIM
Ga0310811_100443264	3300033475	Soil	MNPQERLTLLGTRIRKYDIGEDELLRELGNLQPAFDGGEREANYREKVGAAVEWGKIYLNPVKSEKYDGGREQVRGFLLQDLASAAKIAGDIT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063007

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences