Metagenome / Metatranscriptome Family F063021

Basic Information
Family ID	F063021
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	42 residues
Representative Sequence	PPPGMTALAPGRFGPLADDVLISRGLWQYAHYYDPAGSAP
Number of Associated Samples	109
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.17 %
% of genes near scaffold ends (potentially truncated)	87.69 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Most Common Taxonomy
Group	Bacteria (64.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.462 % of family members)
Environment Ontology (ENVO)	Unclassified (36.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.41% β-sheet: 0.00% Coil/Unstructured: 70.59%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF13302	Acetyltransf_3	14.62
PF00583	Acetyltransf_1	13.08
PF00144	Beta-lactamase	10.77
PF04672	Methyltransf_19	4.62
PF00501	AMP-binding	3.08
PF00248	Aldo_ket_red	3.08
PF00589	Phage_integrase	2.31
PF12697	Abhydrolase_6	2.31
PF01266	DAO	2.31
PF00072	Response_reg	1.54
PF13412	HTH_24	1.54
PF01210	NAD_Gly3P_dh_N	1.54
PF12847	Methyltransf_18	0.77
PF00582	Usp	0.77
PF00196	GerE	0.77
PF03091	CutA1	0.77
PF01145	Band_7	0.77
PF06736	TMEM175	0.77
PF12902	Ferritin-like	0.77
PF00805	Pentapeptide	0.77
PF13354	Beta-lactamase2	0.77
PF01740	STAS	0.77
PF13420	Acetyltransf_4	0.77
PF07969	Amidohydro_3	0.77
PF03328	HpcH_HpaI	0.77
PF00296	Bac_luciferase	0.77
PF13649	Methyltransf_25	0.77
PF13404	HTH_AsnC-type	0.77
PF04185	Phosphoesterase	0.77
PF03466	LysR_substrate	0.77
PF01844	HNH	0.77
PF11954	DUF3471	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	10.77
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	10.77
COG2367	Beta-lactamase class A	Defense mechanisms [V]	10.77
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.77
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.77
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.77
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.77
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.77
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.77
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.77
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.38 %
Unclassified	root	N/A	34.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.62 %
Unclassified	root	N/A	34.62 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.38 %
Unclassified	root	N/A	34.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.54 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.38 %
Unclassified	root	N/A	34.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.77 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.23 %
Unclassified	root	N/A	34.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	15.38 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	9.23 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.54 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.77 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.77 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	14.62 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	9.23 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.54 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.77 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.77 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	14.62 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	9.23 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.54 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.77 %
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	0.77 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	14.62 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	9.23 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.77 %
Acrocarpospora macrocephala	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	0.77 %
Kribbella flavida	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella flavida	0.77 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.62 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	14.62 %
Phycicoccus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	9.23 %
Amycolatopsis sp. SID8362	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. SID8362	0.77 %
Acrocarpospora macrocephala	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	0.77 %
Kribbella flavida	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella flavida	0.77 %
Methylocapsa aurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	0.77 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.77 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.77 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig02546	All Organisms → cellular organisms → Bacteria	2100	Open in IMG/M
2170459010\|GIO7OMY02HKH98	Not Available	500	Open in IMG/M
3300000955\|JGI1027J12803_108544767	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005332\|Ga0066388_102189264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	997	Open in IMG/M
3300005332\|Ga0066388_106810582	Not Available	575	Open in IMG/M
3300005336\|Ga0070680_101683760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	550	Open in IMG/M
3300005355\|Ga0070671_100427701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1134	Open in IMG/M
3300005435\|Ga0070714_100476240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1188	Open in IMG/M
3300005587\|Ga0066654_10506133	Not Available	663	Open in IMG/M
3300005617\|Ga0068859_101075083	Not Available	885	Open in IMG/M
3300005764\|Ga0066903_100624512	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300005764\|Ga0066903_102826552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300005834\|Ga0068851_10451550	Not Available	764	Open in IMG/M
3300006047\|Ga0075024_100534002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	620	Open in IMG/M
3300006086\|Ga0075019_10317445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	941	Open in IMG/M
3300006173\|Ga0070716_100397068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	990	Open in IMG/M
3300006804\|Ga0079221_10184989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1126	Open in IMG/M
3300006804\|Ga0079221_10228495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	1041	Open in IMG/M
3300006904\|Ga0075424_102206129	Not Available	580	Open in IMG/M
3300006914\|Ga0075436_100650495	Not Available	779	Open in IMG/M
3300006954\|Ga0079219_11160879	Not Available	663	Open in IMG/M
3300009137\|Ga0066709_103379858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300009148\|Ga0105243_10474689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1179	Open in IMG/M
3300009700\|Ga0116217_10428829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	837	Open in IMG/M
3300009792\|Ga0126374_10675099	Not Available	773	Open in IMG/M
3300010358\|Ga0126370_12341930	Not Available	529	Open in IMG/M
3300010359\|Ga0126376_10029244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3704	Open in IMG/M
3300010360\|Ga0126372_12722228	Not Available	546	Open in IMG/M
3300010376\|Ga0126381_101373339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1021	Open in IMG/M
3300010376\|Ga0126381_102428722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa aurea	752	Open in IMG/M
3300010376\|Ga0126381_103205862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	647	Open in IMG/M
3300010396\|Ga0134126_11231548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	831	Open in IMG/M
3300010401\|Ga0134121_10893149	Not Available	862	Open in IMG/M
3300012208\|Ga0137376_10199486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1731	Open in IMG/M
3300012361\|Ga0137360_11107640	Not Available	684	Open in IMG/M
3300015372\|Ga0132256_102169849	Not Available	660	Open in IMG/M
3300016270\|Ga0182036_11054624	Not Available	672	Open in IMG/M
3300016357\|Ga0182032_10107243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1986	Open in IMG/M
3300016371\|Ga0182034_11502492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300016404\|Ga0182037_11811534	Not Available	545	Open in IMG/M
3300017822\|Ga0187802_10310180	Not Available	616	Open in IMG/M
3300017924\|Ga0187820_1083944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora macrocephala	899	Open in IMG/M
3300017955\|Ga0187817_10960762	All Organisms → cellular organisms → Archaea	547	Open in IMG/M
3300017955\|Ga0187817_10978554	Not Available	542	Open in IMG/M
3300017970\|Ga0187783_10442123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	944	Open in IMG/M
3300018012\|Ga0187810_10062321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella flavida	1422	Open in IMG/M
3300018058\|Ga0187766_11035781	Not Available	586	Open in IMG/M
3300019888\|Ga0193751_1008905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5372	Open in IMG/M
3300020170\|Ga0179594_10358412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	553	Open in IMG/M
3300020581\|Ga0210399_10883707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	726	Open in IMG/M
3300020583\|Ga0210401_10402081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1232	Open in IMG/M
3300021401\|Ga0210393_10873956	Not Available	730	Open in IMG/M
3300021407\|Ga0210383_10752639	Not Available	836	Open in IMG/M
3300021407\|Ga0210383_11133135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300021474\|Ga0210390_10516571	Not Available	1005	Open in IMG/M
3300021478\|Ga0210402_10964940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	779	Open in IMG/M
3300021560\|Ga0126371_10219632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2004	Open in IMG/M
3300021560\|Ga0126371_11423247	Not Available	823	Open in IMG/M
3300024310\|Ga0247681_1036058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	741	Open in IMG/M
3300025910\|Ga0207684_10310947	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300025929\|Ga0207664_10228552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1616	Open in IMG/M
3300025929\|Ga0207664_10377991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1257	Open in IMG/M
3300026041\|Ga0207639_11159720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	725	Open in IMG/M
3300026095\|Ga0207676_10609284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1050	Open in IMG/M
3300027110\|Ga0208488_1077531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300027167\|Ga0208096_109807	Not Available	505	Open in IMG/M
3300027898\|Ga0209067_10146788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1250	Open in IMG/M
3300027898\|Ga0209067_10429279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	743	Open in IMG/M
3300028379\|Ga0268266_11664347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	613	Open in IMG/M
3300028828\|Ga0307312_10816430	Not Available	618	Open in IMG/M
3300030056\|Ga0302181_10512780	Not Available	504	Open in IMG/M
3300031545\|Ga0318541_10252686	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300031545\|Ga0318541_10539350	Not Available	653	Open in IMG/M
3300031545\|Ga0318541_10827942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300031640\|Ga0318555_10494709	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300031713\|Ga0318496_10095767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1589	Open in IMG/M
3300031713\|Ga0318496_10493885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	677	Open in IMG/M
3300031718\|Ga0307474_10068639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2631	Open in IMG/M
3300031719\|Ga0306917_11098501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	619	Open in IMG/M
3300031720\|Ga0307469_12014957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	560	Open in IMG/M
3300031723\|Ga0318493_10059753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300031723\|Ga0318493_10111475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1383	Open in IMG/M
3300031724\|Ga0318500_10738844	Not Available	503	Open in IMG/M
3300031747\|Ga0318502_10297725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	948	Open in IMG/M
3300031763\|Ga0318537_10117796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300031765\|Ga0318554_10083322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1786	Open in IMG/M
3300031765\|Ga0318554_10098401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1643	Open in IMG/M
3300031765\|Ga0318554_10804030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	526	Open in IMG/M
3300031768\|Ga0318509_10172889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1197	Open in IMG/M
3300031769\|Ga0318526_10057909	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300031770\|Ga0318521_10857730	Not Available	554	Open in IMG/M
3300031771\|Ga0318546_10030262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3217	Open in IMG/M
3300031771\|Ga0318546_10157253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1535	Open in IMG/M
3300031795\|Ga0318557_10355561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. SID8362	673	Open in IMG/M
3300031819\|Ga0318568_10939004	Not Available	535	Open in IMG/M
3300031831\|Ga0318564_10014017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3235	Open in IMG/M
3300031833\|Ga0310917_10756136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	657	Open in IMG/M
3300031835\|Ga0318517_10275146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	760	Open in IMG/M
3300031860\|Ga0318495_10276345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	750	Open in IMG/M
3300031879\|Ga0306919_11106801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300031897\|Ga0318520_10163556	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300031945\|Ga0310913_10519258	Not Available	846	Open in IMG/M
3300032010\|Ga0318569_10188566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	954	Open in IMG/M
3300032043\|Ga0318556_10104443	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300032043\|Ga0318556_10130731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1288	Open in IMG/M
3300032052\|Ga0318506_10072335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1434	Open in IMG/M
3300032052\|Ga0318506_10237447	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300032055\|Ga0318575_10576636	Not Available	570	Open in IMG/M
3300032066\|Ga0318514_10183308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1094	Open in IMG/M
3300032068\|Ga0318553_10641369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300032076\|Ga0306924_12139682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.	572	Open in IMG/M
3300032090\|Ga0318518_10148336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1191	Open in IMG/M
3300032261\|Ga0306920_100837767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1348	Open in IMG/M
3300032261\|Ga0306920_102116713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	785	Open in IMG/M
3300032770\|Ga0335085_10635252	Not Available	1196	Open in IMG/M
3300032805\|Ga0335078_12026239	Not Available	615	Open in IMG/M
3300032896\|Ga0335075_11194145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	661	Open in IMG/M
3300033134\|Ga0335073_10735242	Not Available	1071	Open in IMG/M
3300033289\|Ga0310914_10357870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1320	Open in IMG/M
3300033290\|Ga0318519_11019468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.31%
Host-Associated	Host-Associated	7.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.62%
Aquatic	Environmental → Aquatic	7.69%
Plants	Host-Associated → Plants	7.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.85%
Freshwater	Environmental → Aquatic → Freshwater	4.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.62%
Sediment	Environmental → Aquatic → Sediment	3.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.08%
Peat	Environmental → Terrestrial → Peat	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.69%
Loam	Environmental → Terrestrial → Soil → Loam	11.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.62%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.31%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.08%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.54%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.54%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.54%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.54%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.77%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027167	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063021

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00514960	2166559006	Grass Soil	MTALAPDRFGPLTGDVLVSRGLWQYAHYYDPAGVAS
F62_09829610	2170459010	Grass Soil	ARRWPPWITTGAAPPGMTALAPGRFGPLPDDELVTRGLWQYAHYYDPMVS
JGI1027J12803_1085447671	3300000955	Soil	GLTALSPGRFGPLPDDELVTRGLWQYAHYYDPAAPDLE*
Ga0066388_1021892641	3300005332	Tropical Forest Soil	TGAAPPGLTALSPGRFGPLPDDELVSRGLWQYAHYYDPAAPDLE*
Ga0066388_1068105822	3300005332	Tropical Forest Soil	TGAAPPGLTALSPGRFGPLPDDELVSRGLWQYAHYYDPAAADPE*
Ga0070680_1016837601	3300005336	Corn Rhizosphere	TSDTPPPGMTALSPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPS*
Ga0070671_1004277011	3300005355	Switchgrass Rhizosphere	AAWITSDTPPPGMTALSPDRFGPLTGEVLVSRGLWQYAHYYDPAGVAS*
Ga0070714_1004762403	3300005435	Agricultural Soil	TPPPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPA*
Ga0066661_109354321	3300005554	Soil	DTPPPGMTALAPGRFGPLTDDVLISRGLWQYAHYYDPAGGAPEAAGPDR*
Ga0066654_105061332	3300005587	Soil	MMALSPGRFGPLTDDVLVSRGLWQYAHYYDPAGVAS*
Ga0068859_1010750832	3300005617	Switchgrass Rhizosphere	LAAWITSDTPPPGMTALSPDRFGPLTGDVLVSRGLWQYAHYYDPAGVPS*
Ga0066903_1006245121	3300005764	Tropical Forest Soil	PPGMMLLAPDRFGPASDDALVKDGLWQYAHYYDPVASDLV*
Ga0066903_1028265523	3300005764	Tropical Forest Soil	WITTGTPPPGFEALSPARFGPLPDDTLIARGMWQYAHYYDPAA*
Ga0068851_104515502	3300005834	Corn Rhizosphere	SDTPPPGMTALAPDRFGPLIDEVLVSRGLWQYAHYYDPAGVPS*
Ga0075024_1005340022	3300006047	Watersheds	AWITGGGPPPGLSALSPGRFGPLPDDDLLSRGLWQYAHYYDPTTS*
Ga0075019_103174452	3300006086	Watersheds	AWITGGTPPPGLSVLSPGRFGPLPDDDLLSRGLWQYAHYYDPSTS*
Ga0070716_1003970681	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GMTALSPDRFGPLTGDVLVSRGLWQYAHYYDPAGVPS*
Ga0079221_101849893	3300006804	Agricultural Soil	PPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPA*
Ga0079221_102284953	3300006804	Agricultural Soil	MTSDTPPPGMMALSPDRFGPVSDEVLVSRGLWQYAHYYDPAGVAS*
Ga0075424_1022061291	3300006904	Populus Rhizosphere	LAAWITSDTPPPGMTALAPDRFGPMTGEALVSRGLWQYAHYYDPAGVPS*
Ga0075436_1006504951	3300006914	Populus Rhizosphere	SDTPPPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPA*
Ga0079219_111608791	3300006954	Agricultural Soil	ALSPARLGTLPDDALISRGLWQYAHYYDPAPGGASG*
Ga0066709_1033798581	3300009137	Grasslands Soil	PPPGMTALAPGRFGPLADDVLISRGLWQYAHYYDPAGSAP*
Ga0105243_104746891	3300009148	Miscanthus Rhizosphere	ITSDSPPSGMTALSPARFGPLPAEELVSRGLWQYAHYYDPASVAS*
Ga0116218_11426582	3300009522	Peatlands Soil	MTALSPGRFGPLPDDALLTRGLWQYAHYYGPVTSAP
Ga0116217_104288291	3300009700	Peatlands Soil	PGLSVLSPGRFGPLPDDDLLSRGLWQYAHYYDPSTS*
Ga0126374_106750992	3300009792	Tropical Forest Soil	APGRFGPLTDDVLVSRGLWQYAHYYDPLAGSAVSGS*
Ga0126370_123419302	3300010358	Tropical Forest Soil	GVEALSPARFGTLPDDALITRGLWQYAHYYDPAPAGGAAR*
Ga0126376_100292441	3300010359	Tropical Forest Soil	LTALSPGRFGPLPDDELVSRGLWQYAHYYDPAAADPE*
Ga0126372_127222281	3300010360	Tropical Forest Soil	WITTGAAPPGMTALSPGRFGPLPDDELVSRGLWQYAHYYDPAEALSSGAPPA*
Ga0126381_1013733391	3300010376	Tropical Forest Soil	DLAPGRFGPLTDDALVSRGLWQYAHYYDPVGPDQG*
Ga0126381_1024287221	3300010376	Tropical Forest Soil	MTDLAPGRFGPLTDDALVSRGLWQYAHYYDPTGPDQG*
Ga0126381_1032058623	3300010376	Tropical Forest Soil	PGMAALAPARFGALTEDVLVSRGIWQYAHYYDPASQPA*
Ga0134126_112315481	3300010396	Terrestrial Soil	SDTPPPGMTALSPDRFGPLTGDVLVSRGLWQYAHYYDPAGVAS*
Ga0134121_108931491	3300010401	Terrestrial Soil	TALSPDRFGPLTGDVLVSRGLWQYAHYYDPAGVPS*
Ga0137376_101994863	3300012208	Vadose Zone Soil	AAPSGMTALAPGRFGPLADDVLVTRGLWEYAHFYDPVGNGPERS*
Ga0137360_111076402	3300012361	Vadose Zone Soil	ITGDTPPPGMTELSPDRFGPVTDDALVSRGLWQYAHYYDPADGAP*
Ga0132256_1021698492	3300015372	Arabidopsis Rhizosphere	PGITALSPGRFGPLTDDALVSRGLWQYAHYYDPVGDAP*
Ga0182036_110546242	3300016270	Soil	GMAALSPARFGPLPDDALITRGLWQYAHYYDPASADGTAR
Ga0182032_101072431	3300016357	Soil	ITSGAPPPGLTALAPARFGPLPDDALLSRGLWQYAHYYDPAPS
Ga0182034_115024922	3300016371	Soil	ATWITTGTPPPGFEALSPARFGPLPDDTLIARGLWQYAHYYDPAA
Ga0182037_118115342	3300016404	Soil	ATSITTGTPPPGMEALSPARFGTLPDDALITRGLWQYAHYYDPAPAGGTA
Ga0187802_103101802	3300017822	Freshwater Sediment	MVGGLAELSPGRFGPLPDDALLSRGLWQYAHYYDPVGTELRSSGD
Ga0187820_10839443	3300017924	Freshwater Sediment	GLAALSPGRFGPLPDDTLISRGLWQYAHYYDPTRLDLE
Ga0187817_109607621	3300017955	Freshwater Sediment	TGDEPAGLAALSPGRFGPLPDDTLISRGLWQYAHYYDPTGLDLE
Ga0187817_109785541	3300017955	Freshwater Sediment	ELSPGRFGPLPDDALLSRGLWQYAHYYDPVGTELR
Ga0187783_104421231	3300017970	Tropical Peatland	WITSGTPPPGLTALAPARFGLLPDDTLLTRGLWQYAHYYDPTDPDLG
Ga0187810_100623213	3300018012	Freshwater Sediment	MVGGLAELSPGRFGPLPDDALLSRGLWQYAHYYDPVGTELR
Ga0187766_110357811	3300018058	Tropical Peatland	PGLSALPPGRFGPLPDDALLSRGLWQYAHYYDPAAPDLG
Ga0193751_10089057	3300019888	Soil	WITDGRPQPGLAALSPGRFAGLTDDALVRNGIWQYAHYYDPAAAGSG
Ga0179594_103584122	3300020170	Vadose Zone Soil	TGDTPPPGMTALAPDRFGPVSDEVLISRGLWQYAHYYDPAGVPS
Ga0210399_108837072	3300020581	Soil	AEFSPGRFGRLRDDVLLDRGLWQYAHYYDPTAPDLG
Ga0210395_110435821	3300020582	Soil	TPPPGMTALAPGRFGPLTDDVLISRGLWQYAHYYDPAGGAPEAAGPDR
Ga0210401_104020812	3300020583	Soil	WITSGTPPPGLAEFSPGRFGRLRDDVLLDRGLWQYAHYYDPIAPDLG
Ga0210393_108739561	3300021401	Soil	TGGSPPEGMAALSPGRFGPVRDDELTSRGLWQYAHYYDPAA
Ga0210386_115500351	3300021406	Soil	ALATWITSGTPPPGLAELSPGRFGRLRDDVLLDRGLWQYAHYYDPIAPDLG
Ga0210386_116576271	3300021406	Soil	PPGLTALSPARFGPLSDDALITRGLWQYTHYYDPAGPVTPEPAEPE
Ga0210383_107526392	3300021407	Soil	PGFAALSPARFGPLPDDTLVTQGLWQYAHYYDPAGSL
Ga0210383_111331352	3300021407	Soil	GFAALSPARFGPLPDDTLVTQGLWQYAHYYDPVAVAPGR
Ga0210390_105165712	3300021474	Soil	TTGTPPPGFAARSPARFGPLPDDTLVTQGLWQYAHYYDPADNL
Ga0210402_109649402	3300021478	Soil	EELATWITTGAPSPGMEALSPARFGPLPDDALIARGVWQYAHYYDPAPAPG
Ga0210409_104913812	3300021559	Soil	PPGMTALAPGRFGPLTDDVLISRGLWQYAHYYDPAGGAPEAAGPDR
Ga0126371_102196321	3300021560	Tropical Forest Soil	TWITTGAPPPGMEALSPARFGALPDDTLITRGLWQYAHYYDPAPAGQP
Ga0126371_114232472	3300021560	Tropical Forest Soil	VAALSPARFGTLPDDALITRGLWQYAHYYDPAPAGGAPR
Ga0213853_113391411	3300021861	Watersheds	MTALSPGRFGPLPDDALLTRGLWQYAHYYDPVPSAPT
Ga0247681_10360581	3300024310	Soil	LAAWITSDTPPPGMTALSPDRFGPLTGEVLVSRGLWQYAHYYDPAGVAS
Ga0207699_103420053	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	GDTPPPGMTALAPGRFGPLTDDVLISRGLWQYAHYYDPAGGAPEAAGPDR
Ga0207684_103109471	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PGMASLSPARLGPLPDDTLITRGLWQYAHYYDPAPAGAHQPG
Ga0207663_107490092	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RFGPLTDDVLISRGLWQYAHYYDPAGGAPEAAGPDR
Ga0207664_102285521	3300025929	Agricultural Soil	SDTPPPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPA
Ga0207664_103779913	3300025929	Agricultural Soil	SDTPPPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPS
Ga0207665_112438691	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PPPGRTGLAPGRFGPMADDVLISRGLWQYAHYYDPAGGAPEAAGPDR
Ga0207639_111597202	3300026041	Corn Rhizosphere	WITSDTPPPGMTALAPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPS
Ga0207676_106092841	3300026095	Switchgrass Rhizosphere	TELSPGRFGPVTDDALVSRGLWQYAHYYDPVGSAP
Ga0208488_10775312	3300027110	Forest Soil	PPGMTALSPGRFGPLPDAALLTRGLWQYAHYYDPVTSTTG
Ga0208096_1098072	3300027167	Forest Soil	GLAELSPGRFGRLPDNVLLDRGLWQYAHYYDPTAPDLG
Ga0209067_101467881	3300027898	Watersheds	VNIWKITSGDAPPGVEALSPGRFGPLPDDVLLTRGLWQYAHY
Ga0209067_104292791	3300027898	Watersheds	AWITGGTPPPGLSVLSPGRFGPLPDDDLLSRGLWQYAHYYDPSTS
Ga0268266_116643472	3300028379	Switchgrass Rhizosphere	PGMTALSPDRFGPLSDEVLVSRGLWQYAHYYDPAGVPS
Ga0307312_108164301	3300028828	Soil	DTPPPGMTALAPDRFGPLTGDVLVSRGLWQYAHYYDPAGVAS
Ga0302181_105127802	3300030056	Palsa	PPGMTALSPGRFGPLPDAVLLTRGLWQYAHYYDPVTSTTG
Ga0318541_102526862	3300031545	Soil	MTDLAPGRFGPLTDDALVSRGLWQYARYYDPVAGTVVSGG
Ga0318541_105393501	3300031545	Soil	WITTGTAPPGAEALSPARFGALPDDALITRGLWQYAHYYDPAPA
Ga0318541_108279422	3300031545	Soil	TGTAPPGAEALSPARFGPLPDDAVITRGLWQYAHYYDPAPA
Ga0318555_104947092	3300031640	Soil	MAAWITGHAPPGLTALSPGRFGPLRDDALVSRGLWQYAHYYDPVVPDLD
Ga0318496_100957672	3300031713	Soil	PGLAALAPARFGPLPDDALLSRGLWQYAHYYDPATS
Ga0318496_104938851	3300031713	Soil	TGQTPPPGMTDLAPGRFGPLTDDALVSRGLWQYAHYYDPVAGPALSGG
Ga0307474_100686392	3300031718	Hardwood Forest Soil	MTALAPDRFGPLSGEVLVSRGLWQYAHYYDPAGVPS
Ga0306917_110985012	3300031719	Soil	TAPPGAEALSPARFGPLPDDAVITRGLWQYAHYYDPAPA
Ga0307469_120149572	3300031720	Hardwood Forest Soil	WITSDTPPPGMTALSPDRFGPLSDEVLVSRGLWQYAHYYDPASVAS
Ga0318493_100597531	3300031723	Soil	TDLAPGRFGPLTDDVLVTRGLWQYAHYYDPVAGSALSGS
Ga0318493_101114751	3300031723	Soil	EALATWITTGTAPPGAEALSPARFGALPDDALITRGLWQYAHYYDPAPA
Ga0318500_107388441	3300031724	Soil	GMTALAPGRFGPLPDDELVTRGLWQYAHYYDPAAPDPG
Ga0318502_102977251	3300031747	Soil	TGETPPPGMTDLAPGRFGPLTDDVLVTRGLWQYAHYYDPVAGSALSGS
Ga0318537_101177961	3300031763	Soil	WITAGAPPPGGEALSPARFGPLPDDSLITQGLWQYAHYYDPAPA
Ga0318554_100833221	3300031765	Soil	GADALAPARFGALTDDVLVSRGIWQYAHYYDPASQPA
Ga0318554_100984011	3300031765	Soil	ATWITTGTAPPGAEALSPARFGPLPDDALITRGLWQYAHYYDPAPA
Ga0318554_108040302	3300031765	Soil	TWITGGTPPPGLTALAPARFGPLPDDALLSRGLWQYAHYYDPATS
Ga0318509_101728893	3300031768	Soil	DAPLGMTALAPGRFGPLPDDELVTRGLWQYAHYYDPAAPDPG
Ga0318526_100579092	3300031769	Soil	PPGFEALSPARFGPLPEDTLLARGLWQYAHYYDPAA
Ga0318521_108577302	3300031770	Soil	AWITGHAPPGLTALSPGRFGPLRDDALVSRGLWQYAHYYDPVLPDLD
Ga0318546_100302621	3300031771	Soil	PEPLQPLATWITTGTPPPGFEALSPARFGPLPDDTLIARGLWQYAHYYDPAA
Ga0318546_101572531	3300031771	Soil	PPPGMTDLAPGRFGPLTDDVLVSRGIWQYAHYYDPTAPDLG
Ga0318557_103555611	3300031795	Soil	PPGLTALSPGRFGPLRDDALVSRGLWQYAHYYDPVVPDLD
Ga0318568_109390041	3300031819	Soil	LSPARFGTLPDDALITRGLWQYAHYYDPAPAGGTA
Ga0318564_100140177	3300031831	Soil	ITGETPPPGMTDLAPGRFGPLTDDVLVSRGIWQYAHYYDPTAPDLG
Ga0310917_107561361	3300031833	Soil	GMTDLAPGRFGPLTDDALVSRGLWQYARYYDPVAGTVVSGG
Ga0318517_102751461	3300031835	Soil	PPPGMTDLAPGRFGPLTDDVLVTRGLWQYAHYYDPVAGSALSGS
Ga0318495_102763451	3300031860	Soil	GLAALAPARFGPLPDDALLSRGLWQYAHYYDPATS
Ga0306919_111068011	3300031879	Soil	PGFEALSPARFGPLPDDTLIARGLWQYAHYYDPAA
Ga0318520_101635562	3300031897	Soil	TVSPPPGFEALSPARFGPLPEDTLLARGLWQYAHYYDPAA
Ga0310913_105192581	3300031945	Soil	ADGTPPPGMTDLAPGRFGPLADDALVSRGLWQYARYYDPVAGTVVSGG
Ga0318569_101885661	3300032010	Soil	APPGAEALSPARFGPLPDDAVITRGLWQYAHYYDPAPA
Ga0318556_101044431	3300032043	Soil	AWITTGSPPPGFEALSPARFGPLPEDTLLARGLWQYAHYYDPAA
Ga0318556_101307312	3300032043	Soil	WITTGTAPPGAEALSPARFGPLPDDAVITRGLWQYAHYYDPAPA
Ga0318506_100723355	3300032052	Soil	PGMTDLAPGRFGPLTDDVLVSRGIWQYAHYYDPTAPDLG
Ga0318506_102374471	3300032052	Soil	MTDLAPGRFGPLTDDALVSRGLWQYAHYYDPVAPDL
Ga0318575_105766361	3300032055	Soil	ALSPARFGTLPDDALITRGLWQYAHYYDPAPAGGATR
Ga0318514_101833081	3300032066	Soil	FADWAGTPLAVARSGPLPDDALLSRGLWQYAHYYDPATS
Ga0318553_106413692	3300032068	Soil	WITSGAPPPGLTALAPARFGPLPDDALLSRGLWQYAHYYDPAAPDPG
Ga0306924_121396822	3300032076	Soil	GMTDLAPGRFGPLTDDVLVTRGLWQYAHYYDPVAGSALSGS
Ga0318518_101483362	3300032090	Soil	TWITGGTPPPGLAALAPARFGPLPDDALLSRGLWQYAHYYDPATS
Ga0306920_1008377672	3300032261	Soil	LATWITGGTPPPGLAALAPARFGPLPDDALLSRGLWQYAHYYDPATS
Ga0306920_1021167131	3300032261	Soil	ATWITSGAPPPGLTALAPARFGPLPDDALLSRGLWQYAHYYDPAAPDPG
Ga0335085_106352522	3300032770	Soil	PPGMTDLAPGRFGPLTDDVLVSRGLWQYAHYYDPAGVP
Ga0335078_120262392	3300032805	Soil	TPPPGMTALAPDRFGPVTGEALVSRGLWQYAHYYDPAGVAS
Ga0335075_111941452	3300032896	Soil	TSGAPSPDLAPFSPARFGPLPDDVLVSRGLWQYAHYYDPVTS
Ga0335073_107352424	3300033134	Soil	LAGLAPSRFGRLADQDLIERGCWQYAHYYDPAGSDLG
Ga0310914_103578701	3300033289	Soil	GMTDLAPGRFGPLTDDVLVSRGIWQYAHYYDPTAPDLG
Ga0318519_110194681	3300033290	Soil	ITGGTPPPGMSALAPGRFGPLPDDELLSRGRWQYAHYYDPATS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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