Metagenome / Metatranscriptome Family F063124

Basic Information
Family ID	F063124
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	64 residues
Representative Sequence	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIRSK
Number of Associated Samples	112
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.38 %
% of genes near scaffold ends (potentially truncated)	23.08 %
% of genes from short scaffolds (< 2000 bps)	90.77 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Unclassified (74.615 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.615 % of family members)
Environment Ontology (ENVO)	Unclassified (24.615 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.692 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.46% β-sheet: 0.00% Coil/Unstructured: 50.54%
Feature Viewer

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Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF04542	Sigma70_r2	1.54
PF04193	PQ-loop	1.54
PF01717	Meth_synt_2	1.54
PF04268	SoxG	0.77
PF01564	Spermine_synth	0.77
PF09903	DUF2130	0.77
PF03083	MtN3_slv	0.77
PF00491	Arginase	0.77
PF00440	TetR_N	0.77
PF06983	3-dmu-9_3-mt	0.77
PF03781	FGE-sulfatase	0.77
PF00248	Aldo_ket_red	0.77
PF08448	PAS_4	0.77
PF13460	NAD_binding_10	0.77
PF04588	HIG_1_N	0.77
PF00487	FA_desaturase	0.77
PF07883	Cupin_2	0.77
PF12710	HAD	0.77
PF13434	Lys_Orn_oxgnase	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.54
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.54
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.54
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.54
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.54
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.77
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.77
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.77
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.77
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.77
COG4095	Sugar transporter, SemiSWEET family, contains PQ motif	Carbohydrate transport and metabolism [G]	0.77
COG4583	Sarcosine oxidase gamma subunit	Amino acid transport and metabolism [E]	0.77
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
All Organisms	root	All Organisms	25.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
cellular organisms	root	All Organisms → cellular organisms	25.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.23 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.15 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	6.15 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.85 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	6.15 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.31 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	6.15 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.77 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	6.15 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	6.15 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.31 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.77 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.15 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	6.15 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.77 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.77 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.15 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	6.15 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.77 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.77 %
Mesorhizobium amorphae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.62 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	6.15 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	6.15 %
Mesorhizobium amorphae CCBAU 01583	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	0.77 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	0.77 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.77 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.77 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.77 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02I03IZ	Not Available	515	Open in IMG/M
3300000787\|JGI11643J11755_11770649	Not Available	699	Open in IMG/M
3300000789\|JGI1027J11758_12397015	Not Available	710	Open in IMG/M
3300000891\|JGI10214J12806_12551986	Not Available	706	Open in IMG/M
3300000955\|JGI1027J12803_101741438	Not Available	749	Open in IMG/M
3300000956\|JGI10216J12902_100895909	Not Available	1115	Open in IMG/M
3300004156\|Ga0062589_101285746	Not Available	706	Open in IMG/M
3300004463\|Ga0063356_105004743	Not Available	569	Open in IMG/M
3300004479\|Ga0062595_100499659	Not Available	913	Open in IMG/M
3300005347\|Ga0070668_100499451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1053	Open in IMG/M
3300005354\|Ga0070675_100452335	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1152	Open in IMG/M
3300005356\|Ga0070674_102104413	Not Available	515	Open in IMG/M
3300005366\|Ga0070659_100254142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1457	Open in IMG/M
3300005434\|Ga0070709_10359280	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1078	Open in IMG/M
3300005439\|Ga0070711_101158219	Not Available	668	Open in IMG/M
3300005564\|Ga0070664_101893949	Not Available	566	Open in IMG/M
3300005564\|Ga0070664_102169032	Not Available	527	Open in IMG/M
3300006163\|Ga0070715_10234423	Not Available	951	Open in IMG/M
3300006163\|Ga0070715_10566501	Not Available	661	Open in IMG/M
3300006175\|Ga0070712_101266566	Not Available	642	Open in IMG/M
3300006852\|Ga0075433_10288223	Not Available	1454	Open in IMG/M
3300006854\|Ga0075425_100634024	Not Available	1229	Open in IMG/M
3300006854\|Ga0075425_102505391	Not Available	571	Open in IMG/M
3300006904\|Ga0075424_100948427	Not Available	918	Open in IMG/M
3300009081\|Ga0105098_10505576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	616	Open in IMG/M
3300009093\|Ga0105240_11660050	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	668	Open in IMG/M
3300009094\|Ga0111539_12351462	Not Available	618	Open in IMG/M
3300009101\|Ga0105247_10027525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3438	Open in IMG/M
3300009146\|Ga0105091_10181784	Not Available	996	Open in IMG/M
3300009156\|Ga0111538_10840848	Not Available	1162	Open in IMG/M
3300009156\|Ga0111538_11343918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	902	Open in IMG/M
3300009157\|Ga0105092_10432507	Not Available	750	Open in IMG/M
3300009162\|Ga0075423_10199253	Not Available	2100	Open in IMG/M
3300009168\|Ga0105104_10659024	Not Available	599	Open in IMG/M
3300009168\|Ga0105104_10735304	Not Available	569	Open in IMG/M
3300009545\|Ga0105237_10112129	Not Available	2719	Open in IMG/M
3300009837\|Ga0105058_1071687	Not Available	792	Open in IMG/M
3300010029\|Ga0105074_1031907	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	900	Open in IMG/M
3300010154\|Ga0127503_10767232	Not Available	549	Open in IMG/M
3300010166\|Ga0126306_11321172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	595	Open in IMG/M
3300010373\|Ga0134128_10415274	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300010397\|Ga0134124_11165913	Not Available	789	Open in IMG/M
3300010398\|Ga0126383_10753374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1055	Open in IMG/M
3300010400\|Ga0134122_11805706	Not Available	643	Open in IMG/M
3300011003\|Ga0138514_100138295	Not Available	539	Open in IMG/M
3300011120\|Ga0150983_13380439	Not Available	787	Open in IMG/M
3300012907\|Ga0157283_10268539	Not Available	576	Open in IMG/M
3300012914\|Ga0157297_10077459	Not Available	945	Open in IMG/M
3300012938\|Ga0162651_100093347	Not Available	510	Open in IMG/M
3300012941\|Ga0162652_100045535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	702	Open in IMG/M
3300012951\|Ga0164300_10002989	Not Available	4405	Open in IMG/M
3300012951\|Ga0164300_10382055	Not Available	767	Open in IMG/M
3300012951\|Ga0164300_10606821	Not Available	647	Open in IMG/M
3300012957\|Ga0164303_11307508	Not Available	537	Open in IMG/M
3300012957\|Ga0164303_11362642	Not Available	528	Open in IMG/M
3300012958\|Ga0164299_10294044	Not Available	994	Open in IMG/M
3300012958\|Ga0164299_11454713	Not Available	532	Open in IMG/M
3300012960\|Ga0164301_10064266	Not Available	1958	Open in IMG/M
3300012961\|Ga0164302_10149629	All Organisms → cellular organisms → Bacteria → Proteobacteria	1373	Open in IMG/M
3300012961\|Ga0164302_11006337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	650	Open in IMG/M
3300012961\|Ga0164302_11734122	Not Available	525	Open in IMG/M
3300012984\|Ga0164309_10267027	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1216	Open in IMG/M
3300012984\|Ga0164309_10654736	Not Available	827	Open in IMG/M
3300012984\|Ga0164309_10687398	Not Available	810	Open in IMG/M
3300012985\|Ga0164308_10144412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1748	Open in IMG/M
3300012985\|Ga0164308_11317463	Not Available	656	Open in IMG/M
3300012987\|Ga0164307_10196092	Not Available	1371	Open in IMG/M
3300012987\|Ga0164307_11923024	Not Available	501	Open in IMG/M
3300012988\|Ga0164306_11608957	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300012989\|Ga0164305_10012694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4132	Open in IMG/M
3300012989\|Ga0164305_10180706	Not Available	1464	Open in IMG/M
3300013296\|Ga0157374_12525568	Not Available	541	Open in IMG/M
3300013297\|Ga0157378_11846544	Not Available	653	Open in IMG/M
3300013308\|Ga0157375_10842971	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1063	Open in IMG/M
3300014968\|Ga0157379_12550570	Not Available	512	Open in IMG/M
3300015371\|Ga0132258_10204663	Not Available	4790	Open in IMG/M
3300015371\|Ga0132258_10292286	Not Available	4004	Open in IMG/M
3300015373\|Ga0132257_100023886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6500	Open in IMG/M
3300017792\|Ga0163161_11329722	Not Available	625	Open in IMG/M
3300017822\|Ga0187802_10135545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	937	Open in IMG/M
3300017932\|Ga0187814_10125807	Not Available	951	Open in IMG/M
3300017933\|Ga0187801_10087112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1173	Open in IMG/M
3300017955\|Ga0187817_10120090	Not Available	1663	Open in IMG/M
3300018028\|Ga0184608_10162556	Not Available	967	Open in IMG/M
3300018054\|Ga0184621_10280841	Not Available	589	Open in IMG/M
3300018061\|Ga0184619_10497728	Not Available	538	Open in IMG/M
3300018076\|Ga0184609_10120817	Not Available	1191	Open in IMG/M
3300018078\|Ga0184612_10339287	Not Available	764	Open in IMG/M
3300018469\|Ga0190270_12955483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	537	Open in IMG/M
3300019269\|Ga0184644_1454181	Not Available	500	Open in IMG/M
3300019356\|Ga0173481_10046422	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300020080\|Ga0206350_11340982	Not Available	707	Open in IMG/M
3300021951\|Ga0222624_1315144	Not Available	530	Open in IMG/M
3300022195\|Ga0222625_1747235	Not Available	833	Open in IMG/M
3300022508\|Ga0222728_1126468	Not Available	505	Open in IMG/M
3300022533\|Ga0242662_10156738	Not Available	692	Open in IMG/M
3300022726\|Ga0242654_10295621	Not Available	594	Open in IMG/M
3300023072\|Ga0247799_1067110	Not Available	615	Open in IMG/M
3300023261\|Ga0247796_1050260	Not Available	724	Open in IMG/M
3300025325\|Ga0209341_10977163	Not Available	624	Open in IMG/M
3300025327\|Ga0209751_10438441	Not Available	1078	Open in IMG/M
3300025766\|Ga0209280_1010596	Not Available	588	Open in IMG/M
3300025899\|Ga0207642_10234921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium amorphae → Mesorhizobium amorphae CCBAU 01583	1032	Open in IMG/M
3300025901\|Ga0207688_10500418	Not Available	761	Open in IMG/M
3300025911\|Ga0207654_11072341	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300025916\|Ga0207663_11386057	Not Available	566	Open in IMG/M
3300025916\|Ga0207663_11724649	Not Available	504	Open in IMG/M
3300025932\|Ga0207690_10928361	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	722	Open in IMG/M
3300025933\|Ga0207706_10647756	Not Available	905	Open in IMG/M
3300025949\|Ga0207667_11929128	Not Available	552	Open in IMG/M
3300025972\|Ga0207668_10197093	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1601	Open in IMG/M
3300026023\|Ga0207677_12136173	Not Available	521	Open in IMG/M
3300026041\|Ga0207639_11457667	Not Available	642	Open in IMG/M
3300026118\|Ga0207675_100161882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2135	Open in IMG/M
3300027395\|Ga0209996_1025850	Not Available	840	Open in IMG/M
3300027717\|Ga0209998_10086289	Not Available	765	Open in IMG/M
3300027907\|Ga0207428_10167635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	1664	Open in IMG/M
3300030903\|Ga0308206_1083204	Not Available	693	Open in IMG/M
3300031092\|Ga0308204_10299571	Not Available	538	Open in IMG/M
3300031099\|Ga0308181_1100370	Not Available	625	Open in IMG/M
3300031114\|Ga0308187_10358247	Not Available	565	Open in IMG/M
3300031125\|Ga0308182_1026850	Not Available	515	Open in IMG/M
3300031421\|Ga0308194_10199439	Not Available	647	Open in IMG/M
3300031740\|Ga0307468_101477366	Not Available	629	Open in IMG/M
3300031949\|Ga0214473_10206194	All Organisms → cellular organisms → Bacteria → Proteobacteria	2274	Open in IMG/M
3300032179\|Ga0310889_10476515	Not Available	630	Open in IMG/M
3300032205\|Ga0307472_100949506	Not Available	801	Open in IMG/M
3300033551\|Ga0247830_10561670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.23%
Host-Associated	Host-Associated	30.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.38%
Plants	Host-Associated → Plants	30.00%
Aquatic	Environmental → Aquatic	13.85%
Human	Host-Associated → Human	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Freshwater	Environmental → Aquatic → Freshwater	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Sediment	Environmental → Aquatic → Sediment	3.85%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.31%
Digestive System	Host-Associated → Human → Digestive System	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Loam	Environmental → Terrestrial → Soil → Loam	7.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.08%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.31%
Sand	Environmental → Terrestrial → Soil → Sand	1.54%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.08%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.54%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.54%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.54%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.77%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.77%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.38%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.08%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.31%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.31%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.54%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.54%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.54%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025766	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-three (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_09247270	2189573000	Grass Soil	MTGKRKSAGNVGRAGRSEAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK
JGI11643J11755_117706492	3300000787	Soil	MIGKRKSSGNVRRAGRLEADLGQKEAELEKTQAELETASEAQLSHMAGGKAAKAALRQKAKIESK*
JGI1027J11758_123970151	3300000789	Soil	MIGKRKSSGNVRRXGRLEADLGQKEAELEKTQAELETASEAQLSHMAGGKAAKAALRQKAKIESK*
JGI10214J12806_125519861	3300000891	Soil	MKGKRKSAAAVGRAGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDANAASRQKAKIQSD*
JGI1027J12803_1017414381	3300000955	Soil	MTGKRKSAGNVGRAGRSEAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
JGI10216J12902_1008959091	3300000956	Soil	MTGKRKSAGNVKRAGRSEADLGQKEAELEKTQAEMEKVGELQLSHKEGGEAVKVARQQKAKIRSK*
Ga0062589_1012857462	3300004156	Soil	GRAGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDANAASRQKAKIQSD*
Ga0063356_1050047431	3300004463	Arabidopsis Thaliana Rhizosphere	MIGKRKSSGNVRRGGRSQADLGQKEAQLEKTQAELEKASETQLSHMEGGKAAKAVLKQKAKIESK*
Ga0062595_1004996592	3300004479	Soil	MIGKRKSSGNVRRAGRLEAGLGQKEAELEKTQAELETASEAQLSHMAGGKAAKAALRQKAKIESK*
Ga0058860_121065991	3300004801	Host-Associated	RSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0070668_1004994513	3300005347	Switchgrass Rhizosphere	MTGKRKSAGRAGRSEAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAA
Ga0070675_1004523352	3300005354	Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAQKAKIRSN
Ga0070674_1021044132	3300005356	Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAARQQKAKIESK*
Ga0070659_1002541422	3300005366	Corn Rhizosphere	MTGKGKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0070709_103592801	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0070711_1011582191	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RRVPCLEVVHMIGKHKSSSNIPRAGRSKPNLGQKEAELEKARAELERVSEAQFSHMEGGKVAKAALKQKAKIESK*
Ga0070664_1018939491	3300005564	Corn Rhizosphere	KGKRKSAAAVGRAGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDANAASRQKAKIQSD*
Ga0070664_1021690322	3300005564	Corn Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAKMEKASEEELRHMEGGYATQSAPLQRRSPMK
Ga0070715_102344232	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MIGKHKSSSNIPRAGRSKPNLGQKEAELEKARAELERVIEAQFSHMEGGKVAKAALKQKAKIESK*
Ga0070715_105665012	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAVKAAGQQKAKIRSK*
Ga0070712_1012665662	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IGKHKSSSNIPRAGRSKPNLGQKEAELEKARAELERVSEAQFSHMEGGKVAKAALKQKAKIESK*
Ga0075433_102882232	3300006852	Populus Rhizosphere	MTGKRKSAGNVGRAGRSEADLGQKEARLEKPQAELETASEAQLSHMEGGKAAKAARQQKAKIKSK*
Ga0075425_1006340242	3300006854	Populus Rhizosphere	MTGKRKSAGNVGRAGRSEADLGQKEARLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIKSK*
Ga0075425_1025053913	3300006854	Populus Rhizosphere	MTGKRKSAVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKA
Ga0075424_1009484273	3300006904	Populus Rhizosphere	MLSRVESAQNQEELMTGKRKSAVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAVRQQKAKIRSK*
Ga0105098_105055761	3300009081	Freshwater Sediment	MTGKRKSAGAVGRAGRSEADLGQKEAGLEKTQAELEKASEAQLSHMEGGKAAKAARQQKAGIESK*
Ga0105240_116600502	3300009093	Corn Rhizosphere	MTGKRKSAGRAGRSEADLGQKEARLEKTQAELETASEAQLGHMEGGKAAKAARQQKA
Ga0111539_123514621	3300009094	Populus Rhizosphere	MTGKRKSASNVKRAGRSEADLGQKEAELEKTQAELEKTSEAQLSHMEGGKAAKVAR
Ga0105247_100275254	3300009101	Switchgrass Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIR
Ga0105091_101817842	3300009146	Freshwater Sediment	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0111538_108408482	3300009156	Populus Rhizosphere	MIGKRKSFGNVRRAGRLEADLGQKEAELEKTQAELETASEAQLSHMAGGKAAKAALRQKAKIESK*
Ga0111538_113439181	3300009156	Populus Rhizosphere	MKGKRKSAAAVGRAGSSKADLGQKEARLEKKQAELEEASQAQLRHMEGGKDAKATSRQKAKIQSE*
Ga0105092_104325071	3300009157	Freshwater Sediment	MTRKRKSAGAVGRAGRSEADLGQKEAGLEKTQAELEKASEAQLSHMEGGKTAKAARQQKAKIQSK*
Ga0075423_101992531	3300009162	Populus Rhizosphere	MFQEHPILSWVESAQNQEELMTGKRKSAVGHAGRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIKSK*
Ga0105104_106590241	3300009168	Freshwater Sediment	MTGKRKSAGRAGRSEAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0105104_107353041	3300009168	Freshwater Sediment	MKGKRKSAAAVGRAGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDAKAAGRQKAKIQSD*
Ga0105237_101121291	3300009545	Corn Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLGHMEGGKAAKAAGQQKAKIRSK*
Ga0105058_10716871	3300009837	Groundwater Sand	MTGKRKSAGNVGRASRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0105074_10319072	3300010029	Groundwater Sand	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELEAASEAQLSHMEVGKAAKAARQQKARIESK*
Ga0127503_107672321	3300010154	Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIESK*
Ga0126306_113211722	3300010166	Serpentine Soil	EIAQMIGKRKSSGNIRPAGRSEADLGQKEAELEKTQAELEKASEAQLSHMEGGKAAKSSLKQKAKIESK*
Ga0134128_104152742	3300010373	Terrestrial Soil	MTGKRKSTVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMKGGKAAKAARHQKAKIRSK*
Ga0134124_111659131	3300010397	Terrestrial Soil	MTGKRKSAGRAGRSEADLGQMEAGLEKTQAELENASETQLSHMEGGKAVKAAGQQKAKIRSK*
Ga0126383_107533742	3300010398	Tropical Forest Soil	MIGKRKKLDKTKRESHLNADLGQKEAGIEKTQAELEEVSELQLSHMEGGKAAKAALKEKAKIL*
Ga0134122_118057062	3300010400	Terrestrial Soil	MTGKRKSTVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMKGGKAAKAARHQRAKIRSK*
Ga0138514_1001382951	3300011003	Soil	MTGKPQSDDKVGRAGRSQADLGQKEAGVEKKDAELEKASKEQLSHMEGGKAAKSARQQKAKLSK*
Ga0150983_133804391	3300011120	Forest Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELEAASEAQLSHMEGGKAAKAARQQKARIESK*
Ga0157283_102685391	3300012907	Soil	SAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0157306_100846841	3300012912	Soil	RSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAARQQKAKIKSK*
Ga0157297_100774591	3300012914	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAEMENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0162651_1000933472	3300012938	Soil	MTGKRKSAGAPERADGTKAELGQKEAQLEQTQAELEEASEAQLRHMEGGKDAKT
Ga0162652_1000455351	3300012941	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAARQQKAKIRSK*
Ga0164300_100029891	3300012951	Soil	MIGKHKSSSNIPRAGRSKPNLGQKEAELEKARAELERVSEAQFSHMEGGKVAKAALKQKAKIESK*
Ga0164300_103820551	3300012951	Soil	MTGKRKSAGNVGRADRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQGEN*
Ga0164300_106068211	3300012951	Soil	MIGKRKSSGSITRAGRSEPDLGQKEAALEKTQAELEKASEAQLSHMAGGKAAKTALKQKAKIESK*
Ga0164303_113075081	3300012957	Soil	KSAGNVGRAGRSEADLGQKEAGLEKTQAELEAASEAQLSHMEGGKAAKAARQQKARIESK
Ga0164303_113626422	3300012957	Soil	MTGKRKSAGAVGRAGRSKADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIRSK
Ga0164299_102940442	3300012958	Soil	MTGKRKSADNVGRAGRSEAELGQKEAGLEKTEAELETASEAQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0164299_114547132	3300012958	Soil	KMTGKRKSAVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0164301_100642662	3300012960	Soil	MTGKRKSAGNVGRADRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0164302_101496293	3300012961	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMAGGKAAKAAGQQKAKIRSK*
Ga0164302_110063371	3300012961	Soil	MTGKRKSAVGRAGRSDADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIRSK*
Ga0164302_117341221	3300012961	Soil	GQANVEELMTGKRKSGGAVGRAGRSKADLGQKEAQLEKTQAELEEASEAQLRHMEGGKDAKAAGQQKAKIRTK*
Ga0164309_102670271	3300012984	Soil	MTGKRKSAGNVGRAGRSEAELGQKEAGLEKTEAELETASEAQLSHMEGGKAAKAARQQKAKIRSK*
Ga0164309_106547361	3300012984	Soil	SAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0164309_106873982	3300012984	Soil	LESIQAKPGVTKITGKRKSAGNVGRAGHSESDLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIETK*
Ga0164308_101444124	3300012985	Soil	CLFRKGNRITPILSRVESAQNQEELMTGKRKSAVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMGGGKAAKAARQQKAKIESK*
Ga0164308_113174631	3300012985	Soil	MTGKRKSAGRAGRSEADLGHKEAGLEKTQAELETASKAQLSQMEGGKAATAAGQEKAKIRSK*
Ga0164307_101960921	3300012987	Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0164307_119230242	3300012987	Soil	MTGKRKSADNVGRAGRSEAELGQKEAGLEKTEAELETASEAQLSHMEGGKAAKAA
Ga0164306_116089572	3300012988	Soil	TGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK*
Ga0164305_100126941	3300012989	Soil	MIGKRKSSSSITRAGRSEPDLGQKEAALEKTQAELEKASEAQLSHMAGGKAAKTALKQKAKIESK*
Ga0164305_101807061	3300012989	Soil	MIGKRKSSSNIRRVGRSEADLGQKEAELEKTQAELEKASETQLSHMEGGKAAKAVLKQKAKIESK*
Ga0157374_125255681	3300013296	Miscanthus Rhizosphere	MTGKRKSAGNVGRAGRSEADLGQKEARLEKTQAELETASVAQLSHMEGGKAAKAARQQKAKIKSK*
Ga0157378_118465441	3300013297	Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGSKAAKAAGQQKAKIRSK*
Ga0157375_108429712	3300013308	Miscanthus Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAKSEEASAEELRHMEGGKAAKAAVEKKRNI*
Ga0157379_125505701	3300014968	Switchgrass Rhizosphere	MTGKRKSAGNVGRAGRSEADLGQKEARLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK*
Ga0132258_102046632	3300015371	Arabidopsis Rhizosphere	LFVPKGEQDHPILSRVESAQNEELMTGKRKSAVGRAGRSEADLGQKEAQLEKTQAELEKASEAQLSHMEGGKAAKAAQKAKIRSK*
Ga0132258_102922865	3300015371	Arabidopsis Rhizosphere	MTGKRKSVGAVGRAGRSKADLGQKEVQLERTQAELEKASKAKLGHMEGGKAAKAAGQQKAKIRSK*
Ga0132257_1000238868	3300015373	Arabidopsis Rhizosphere	MIGKRKSAVGRAGHSKADLGQKEAELEKTQAELDEASKMQLSHMEGGKTAKAAG
Ga0163161_113297222	3300017792	Switchgrass Rhizosphere	AGLLPVVPIWRCHNDRQAQIMIGKRKSSGNVRQADLGQKEAQLEKTQAELEKASETQLSHMVGGKAAKAVLKQKAKIESK
Ga0187802_101355452	3300017822	Freshwater Sediment	VTLRPAGRSEADLGQKEAELEKTQAELEKASEAQLSHMEGGNAATAALKQKAKIESK
Ga0187814_101258071	3300017932	Freshwater Sediment	MIGKRKSSSDIRRAGRSESDLGQKEAELEKTQAELEKASEAQLSHMEGGNAAKAALKQKAKIESK
Ga0187801_100871122	3300017933	Freshwater Sediment	MIGKRKSSSDIRRAGRSEADLGQKEAELKKTQAELEKASEAQLSHMEGGNAAKAALKQKAKIESK
Ga0187817_101200902	3300017955	Freshwater Sediment	MIGKRKSSSDIRRAGRSEADLGQKEAELEKTQAELEKASEAQLSHMEGGNAAKAALKQKAKIESK
Ga0184608_101625562	3300018028	Groundwater Sediment	MTGKRKSAGAVGRAGRSKADLGQKEAQLEKTQAELEKASEAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0184621_102808411	3300018054	Groundwater Sediment	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0184619_104977282	3300018061	Groundwater Sediment	MTGKRKSAGNVGRAGRSKDDLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAAGQRKAKIRSK
Ga0184609_101208172	3300018076	Groundwater Sediment	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHIEGGKAAKAAGQQKAKIRSK
Ga0184612_103392872	3300018078	Groundwater Sediment	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK
Ga0190270_129554831	3300018469	Soil	AGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDAKAASRQKAKIQSD
Ga0184644_14541811	3300019269	Groundwater Sediment	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARHQKAKIESK
Ga0173481_100464221	3300019356	Soil	MTSKRKSAGNVGRAGRSEADLGQKEARLEKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0206350_113409821	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MTGKRKSAERAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0222624_13151441	3300021951	Groundwater Sediment	MTGKRKSAGAVGRAGRSEADLGQKEAQLEKTQAELQKVSEAQLSHMEGGKAAKAAGQQKAKVEKSD
Ga0222625_17472351	3300022195	Groundwater Sediment	MTGKRKSAGAGGRAGRSKADLGQKEAQLEKTQAELEKASEAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0222728_11264681	3300022508	Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSRMEGGKAAKAARQ
Ga0242662_101567381	3300022533	Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKARIESK
Ga0242654_102956211	3300022726	Soil	MTGKRKSAGNVGRAGRSEADLGQKEAGLEKTQAELEAASEAQLSHMEGGKAAKAARQQKARIESK
Ga0247799_10671101	3300023072	Soil	MLSRVESAQNQEELMTGKRKSAVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAVRQQKAKIRSK
Ga0247796_10502601	3300023261	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMKGGKAVKAAGQQKAKIRSK
Ga0209341_109771632	3300025325	Soil	MTGKRKSAGDVGRAGRSKAGLGQKEAGLEKTQAELEEASKAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0209751_104384411	3300025327	Soil	MTGHRKHASAAERASRSQADLGQKEAKLEKKQAELEEASEAQLKHMGSSKDAKAASQQKAKIQSD
Ga0209280_10105961	3300025766	Arctic Peat Soil	MTGKRKSAGNVGRAGRSEPDLGQKEAELETTQAELERASKAQLSHMKGGKAAKAARQPKAKIRSK
Ga0207642_102349212	3300025899	Miscanthus Rhizosphere	MTGKRQSNDKVRQARRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0207688_105004182	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKGKRKSAAAVGRAGSSKADLGQKEARLEKKQAELEEASEAQLRHMEGGKDANAASRQKAKIQSD
Ga0207654_110723411	3300025911	Corn Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAKMEKASEEELRHMEGGYATQSAPLQRRSPM
Ga0207663_113860571	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RASSRRVPCLEVVHMIGKHKSSSNIPRAGRSKPNLGQKEAELEKARAELERVSEAQFSHMEGGKVAKAALKQKAKIESK
Ga0207663_117246491	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTGKRKSTGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0207690_109283612	3300025932	Corn Rhizosphere	MTGKGKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0207706_106477561	3300025933	Corn Rhizosphere	MTGKGKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAVKAAGQQKAKIRSK
Ga0207667_119291281	3300025949	Corn Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAVKAAGQQKAKIRSK
Ga0207668_101970933	3300025972	Switchgrass Rhizosphere	MTGKGKSAGRAGRSEAELGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0207677_121361732	3300026023	Miscanthus Rhizosphere	RAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAVKAAGQQKAKIRSK
Ga0207639_114576671	3300026041	Corn Rhizosphere	MTGKRKSAVGRAGRSEADLGQKEAQLEKTQAELETASEAQLSHMEGGKAAKAAQKAKIRS
Ga0207675_1001618823	3300026118	Switchgrass Rhizosphere	MTGKRKSTVGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0209996_10258501	3300027395	Arabidopsis Thaliana Rhizosphere	MTGKRKSAGRAGRSEADLGQKEAGLEKMQAELENASETQLSHMEGGKAAKAAGQQKAKIRSK
Ga0209998_100862892	3300027717	Arabidopsis Thaliana Rhizosphere	NVRRAGRLEADLGQKEAELEKTQAELETASEAQLSHMAGGKAAKAALRQKAKIESK
Ga0207428_101676354	3300027907	Populus Rhizosphere	MTGKRKSAGNVGRAGRSEADLGQKEARLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIKSK
Ga0308206_10832041	3300030903	Soil	MTGKPKSAGAVGRAGRSKADLGQKEAQIEKTQAELEEASEAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0308204_102995711	3300031092	Soil	MTGKRKSAGAGGRAGRSKADLGQKEAQLEKTQAELEKASKAQLSHMEGGKAAKAAGQQKAKIRSK
Ga0308181_11003701	3300031099	Soil	MTGKRKSAGNVGRAGRSKAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQKAKIESK
Ga0308187_103582471	3300031114	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELENASETQLSHMEGGKAAKAAGQRKAKIRSK
Ga0308182_10268501	3300031125	Soil	MTGKRKSAGRAGRSEAELGQKEAGLEKTQAELETASEAQLSHMEGGKAAKAARQQK
Ga0308194_101994391	3300031421	Soil	MTGKRKSAGRAGRSEADLGQKEAGLEKTQAELETASEAQLSHMEGGKAAKTARQQKAKIESE
Ga0307468_1014773661	3300031740	Hardwood Forest Soil	MIGKHKIGKHKSSGNIPRAGRSKPNLGQKEAELEKAQAELEKVSEAQFSHMEGGKAAKAALKQKAKIESK
Ga0214473_102061943	3300031949	Soil	VTGHRKHASAAERAGRSQADLGQKEANLEKKQAELEEASEAQLKHMGSSKDAKAASQQKAKIQSD
Ga0310889_104765151	3300032179	Soil	MTGKRKSAGNVGRAGHSEADLGQKEAGREKTQAELETASEAQLSHMEGGKAAKAAGQQKAKIESK
Ga0307472_1009495062	3300032205	Hardwood Forest Soil	MIGKHKLGKHKSSGNIPRAGRSKPNLGQKEAELEKAQAELEKVSEEQFSHMEGGKAAKAALKQKAKIESK
Ga0247830_105616701	3300033551	Soil	MTGKRKSADAGGRAHRSKADLGQKEAQLEKTQAELEKASEAQLSHMEGGKAAKAAGQQKAKIRTK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063124

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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