NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F063244

Metagenome / Metatranscriptome Family F063244

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F063244
Family Type Metagenome / Metatranscriptome
Number of Sequences 129
Average Sequence Length 48 residues
Representative Sequence VARTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDG
Number of Associated Samples 81
Number of Associated Scaffolds 129

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 93.02 %
% of genes from short scaffolds (< 2000 bps) 94.57 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.225 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(46.512 % of family members)
Environment Ontology (ENVO) Unclassified
(86.822 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(85.271 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 29.33%    β-sheet: 0.00%    Coil/Unstructured: 70.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.22 %
All OrganismsrootAll Organisms0.78 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005331|Ga0070670_101065349Not Available736Open in IMG/M
3300005347|Ga0070668_101422861Not Available632Open in IMG/M
3300005347|Ga0070668_101747431Not Available571Open in IMG/M
3300005353|Ga0070669_101067913Not Available694Open in IMG/M
3300005355|Ga0070671_100454102Not Available1100Open in IMG/M
3300005355|Ga0070671_100842372Not Available800Open in IMG/M
3300005617|Ga0068859_101211252Not Available832Open in IMG/M
3300005617|Ga0068859_102081693Not Available626Open in IMG/M
3300005719|Ga0068861_102125927Not Available562Open in IMG/M
3300005841|Ga0068863_100206323Not Available1891Open in IMG/M
3300005841|Ga0068863_100973675Not Available850Open in IMG/M
3300005843|Ga0068860_101140105Not Available799Open in IMG/M
3300005843|Ga0068860_102737740Not Available511Open in IMG/M
3300009995|Ga0105139_1064391Not Available670Open in IMG/M
3300010397|Ga0134124_10490777Not Available1186Open in IMG/M
3300010399|Ga0134127_10930787Not Available926Open in IMG/M
3300015270|Ga0182183_1095415Not Available502Open in IMG/M
3300015280|Ga0182100_1064577Not Available587Open in IMG/M
3300015280|Ga0182100_1074287Not Available559Open in IMG/M
3300015284|Ga0182101_1005687Not Available1195Open in IMG/M
3300015293|Ga0182103_1003677Not Available1320Open in IMG/M
3300015306|Ga0182180_1017157Not Available935Open in IMG/M
3300015306|Ga0182180_1082635Not Available529Open in IMG/M
3300015311|Ga0182182_1073564Not Available605Open in IMG/M
3300015313|Ga0182164_1016864Not Available1036Open in IMG/M
3300015313|Ga0182164_1033391Not Available838Open in IMG/M
3300015316|Ga0182121_1064578Not Available697Open in IMG/M
3300015316|Ga0182121_1126716Not Available534Open in IMG/M
3300015319|Ga0182130_1126929Not Available518Open in IMG/M
3300015320|Ga0182165_1026857Not Available933Open in IMG/M
3300015320|Ga0182165_1102876Not Available581Open in IMG/M
3300015325|Ga0182148_1125889Not Available533Open in IMG/M
3300015326|Ga0182166_1110814Not Available559Open in IMG/M
3300015331|Ga0182131_1041413Not Available828Open in IMG/M
3300015331|Ga0182131_1098511Not Available605Open in IMG/M
3300015332|Ga0182117_1103379Not Available622Open in IMG/M
3300015332|Ga0182117_1140476Not Available546Open in IMG/M
3300015334|Ga0182132_1047814Not Available826Open in IMG/M
3300015334|Ga0182132_1107819Not Available609Open in IMG/M
3300015335|Ga0182116_1031800Not Available988Open in IMG/M
3300015336|Ga0182150_1139293Not Available541Open in IMG/M
3300015339|Ga0182149_1071264Not Available722Open in IMG/M
3300015340|Ga0182133_1040556Not Available930Open in IMG/M
3300015348|Ga0182115_1304632Not Available502Open in IMG/M
3300015349|Ga0182185_1190109Not Available619Open in IMG/M
3300015350|Ga0182163_1072489Not Available1012Open in IMG/M
3300015350|Ga0182163_1102694Not Available868Open in IMG/M
3300015350|Ga0182163_1144020Not Available739Open in IMG/M
3300015350|Ga0182163_1216133Not Available601Open in IMG/M
3300015352|Ga0182169_1168097Not Available717Open in IMG/M
3300015352|Ga0182169_1171319Not Available709Open in IMG/M
3300015352|Ga0182169_1181023Not Available689Open in IMG/M
3300015354|Ga0182167_1056738Not Available1361Open in IMG/M
3300015354|Ga0182167_1350728Not Available516Open in IMG/M
3300015354|Ga0182167_1351618Not Available515Open in IMG/M
3300017408|Ga0182197_1024949Not Available988Open in IMG/M
3300017412|Ga0182199_1051564Not Available844Open in IMG/M
3300017412|Ga0182199_1191765Not Available516Open in IMG/M
3300017414|Ga0182195_1075510Not Available766Open in IMG/M
3300017414|Ga0182195_1132464Not Available620Open in IMG/M
3300017421|Ga0182213_1062542Not Available1018Open in IMG/M
3300017421|Ga0182213_1155371Not Available645Open in IMG/M
3300017422|Ga0182201_1059498Not Available682Open in IMG/M
3300017445|Ga0182198_1150298Not Available567Open in IMG/M
3300017693|Ga0182216_1080559Not Available752Open in IMG/M
3300017693|Ga0182216_1128606Not Available629Open in IMG/M
3300020023|Ga0182178_1002328Not Available1073Open in IMG/M
3300020023|Ga0182178_1003294Not Available957Open in IMG/M
3300020023|Ga0182178_1013342Not Available606Open in IMG/M
3300020223|Ga0182118_106092Not Available661Open in IMG/M
3300020223|Ga0182118_109624Not Available579Open in IMG/M
3300025903|Ga0207680_10895033Not Available636Open in IMG/M
3300028050|Ga0268328_1005944Not Available1121Open in IMG/M
3300028050|Ga0268328_1022611Not Available752Open in IMG/M
3300028050|Ga0268328_1043231Not Available606Open in IMG/M
3300028050|Ga0268328_1060540Not Available536Open in IMG/M
3300028051|Ga0268344_1001299Not Available1248Open in IMG/M
3300028053|Ga0268346_1001756Not Available1278Open in IMG/M
3300028057|Ga0268352_1034144Not Available562Open in IMG/M
3300028061|Ga0268314_1024039Not Available672Open in IMG/M
3300028061|Ga0268314_1030501Not Available619Open in IMG/M
3300028061|Ga0268314_1040711Not Available558Open in IMG/M
3300028061|Ga0268314_1043989Not Available543Open in IMG/M
3300028062|Ga0268342_1001207Not Available1605Open in IMG/M
3300028062|Ga0268342_1002242Not Available1309Open in IMG/M
3300028063|Ga0268350_1048235Not Available619Open in IMG/M
3300028064|Ga0268340_1063426Not Available565Open in IMG/M
3300028064|Ga0268340_1069811Not Available545Open in IMG/M
3300028139|Ga0268355_1002036Not Available980Open in IMG/M
3300028139|Ga0268355_1017367Not Available518Open in IMG/M
3300028142|Ga0268347_1001413Not Available1280Open in IMG/M
3300028142|Ga0268347_1019215Not Available605Open in IMG/M
3300028144|Ga0268345_1021012Not Available560Open in IMG/M
3300028148|Ga0268354_1013724Not Available659Open in IMG/M
3300028149|Ga0268353_103694Not Available1025Open in IMG/M
3300028150|Ga0268343_1010724Not Available621Open in IMG/M
3300028152|Ga0268336_1011332Not Available683Open in IMG/M
3300028152|Ga0268336_1028612Not Available516Open in IMG/M
3300028152|Ga0268336_1030617Not Available505Open in IMG/M
3300028153|Ga0268320_1007129Not Available765Open in IMG/M
3300028246|Ga0268351_1020049Not Available671Open in IMG/M
3300028248|Ga0268312_1001123All Organisms → Viruses → Predicted Viral1378Open in IMG/M
3300028248|Ga0268312_1010936Not Available741Open in IMG/M
3300028251|Ga0268324_1023587Not Available521Open in IMG/M
3300028253|Ga0268316_1002843Not Available939Open in IMG/M
3300028262|Ga0268310_1011137Not Available828Open in IMG/M
3300028262|Ga0268310_1011887Not Available812Open in IMG/M
3300028468|Ga0268317_1011528Not Available525Open in IMG/M
3300028472|Ga0268315_1004435Not Available863Open in IMG/M
3300028472|Ga0268315_1021660Not Available544Open in IMG/M
3300028474|Ga0268331_1001932Not Available1073Open in IMG/M
3300028475|Ga0268327_1001476Not Available1130Open in IMG/M
3300028475|Ga0268327_1005228Not Available808Open in IMG/M
3300028475|Ga0268327_1012140Not Available643Open in IMG/M
3300028476|Ga0268329_1011386Not Available669Open in IMG/M
3300028477|Ga0268309_1022065Not Available502Open in IMG/M
3300028525|Ga0268305_104392Not Available690Open in IMG/M
3300028525|Ga0268305_108789Not Available560Open in IMG/M
3300028527|Ga0268335_1008124Not Available646Open in IMG/M
3300028529|Ga0268311_1012675Not Available656Open in IMG/M
3300032467|Ga0214488_1139716Not Available505Open in IMG/M
3300032689|Ga0214497_1079116Not Available724Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere46.51%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere39.53%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.43%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.55%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated0.78%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300020223Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MGHost-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028051Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028053Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028054Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028057Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028062Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028063Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028064Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028139Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028144Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028148Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028149Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028150Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028246Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028248Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028251Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028253Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028468Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028475Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028525Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028527Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032467Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032689Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070670_10106534913300005331Switchgrass RhizosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGRIGCVRCEKIP
Ga0070668_10142286113300005347Switchgrass RhizosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGWIGCVCCEKILT*
Ga0070668_10174743123300005347Switchgrass RhizosphereVARTFALIAPVQYVLQQVSSSYETIPNAPKYYETHRNISSGSNGVDQMC*
Ga0070669_10106791323300005353Switchgrass RhizosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISL
Ga0070671_10045410223300005355Switchgrass RhizosphereLIAPVQYVLQQVSCSYETIPNAPKYYKTHRKNSIGSNGVDWLCLLRKIPT*
Ga0070671_10084237213300005355Switchgrass RhizosphereVPQTLALIAPVQYVLQKVSCSYEMIPNAPKYYETDRNISLGSNGADW
Ga0068859_10121125223300005617Switchgrass RhizosphereFALIAPVQYVLQQVSCSYETIPNAPKYYETHRNISLGSNGVD*
Ga0068859_10208169323300005617Switchgrass RhizosphereFALIALVQYVLQQVSCSYETIPNAPKHCETHQNIGLGSNGVG*
Ga0068861_10212592713300005719Switchgrass RhizosphereTYVLIVPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDWVHSLRKIST*
Ga0068863_10020632313300005841Switchgrass RhizosphereVARTFALIAPVQYVLQQVTCSYETIPNAPKYYEMHQNISLGSNGVDQ
Ga0068863_10097367513300005841Switchgrass RhizosphereMAQTFALIAPLQYGLQQVSCSYETIPNAPKYYETDRNISLGSNGAD
Ga0068860_10114010523300005843Switchgrass RhizosphereFALIEPVQYVLQQVSCSYGTIPNAPKYYKTDGNISLGSNGVDWAHSLRKISM*
Ga0068860_10273774033300005843Switchgrass RhizosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNI
Ga0105139_106439113300009995Switchgrass AssociatedMAQTFALIALVHTTLCRVSCSYETIPNGPKHYATHQNMSLGSNGMDWVRSLRKI
Ga0134124_1049077713300010397Terrestrial SoilMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGADWVCLLRKNPDV
Ga0134127_1093078713300010399Terrestrial SoilVARTIALIAPVLYVLQQVSCSYEMIPNASKYYETDRNISLG
Ga0182183_109541513300015270Switchgrass PhyllosphereMAQTSVRIEPVEYVLQQVLCSYETI*NAPKYYKTDRNISLGSNGVDWVRSLRKI
Ga0182100_106457713300015280Switchgrass PhyllosphereVARTFALIALVQYILQQVSCSYETFLNAPKYYETDRNISSGSNGV
Ga0182100_107428713300015280Switchgrass PhyllosphereARSFVLIELVQYVVQQVSCSYGTNPNEPKYYEMHQNISLGSNRVDWVRSL*
Ga0182101_100568713300015284Switchgrass PhyllosphereVA*TFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNGVDWLRSLPKI
Ga0182103_100367723300015293Switchgrass PhyllosphereMARTFALIAPVQYFLHQVSCSYEKISNAPKYYETH*NISLGSNGVDWVCLLRK
Ga0182180_101715713300015306Switchgrass PhyllosphereVARTFVIIAPVLYVLLQVSCSYETIPNAPKYYETDQNLSLGSN
Ga0182180_108263513300015306Switchgrass PhyllosphereKRDNVERTFALITAVHYVLQQVSCSYGTIPNAPKYYETDRNISLGSNGVDSL*
Ga0182180_109394613300015306Switchgrass PhyllosphereVA*TFALIAPVQYVLQQVSCSYETMPNAPKYYEMNRNIGIVSNGVD*V
Ga0182182_107356413300015311Switchgrass PhyllosphereMARTFALIAPVQYFLHQVSCSYEKISNAPKYYETHRNISLGSNG
Ga0182164_101686423300015313Switchgrass PhyllosphereMARTFALIAPVQYVLQQVSCSYETIPNAPKYYESHRNISLGSNGV
Ga0182164_103339123300015313Switchgrass PhyllosphereVARTFVIIAPVLYVLLQVSCSYETIPNAPKYYETDQ
Ga0182121_106457813300015316Switchgrass PhyllosphereMAQTFALIASVQYVLQKVSCSYETIPNAPKYYETD*NISLGSNGA
Ga0182121_112671623300015316Switchgrass PhyllosphereAQTFALIAPVQYVLQQVSCSYETIPNAPKYYEMHRNIGIGSNGVD*
Ga0182130_112692913300015319Switchgrass PhyllosphereKHDIVARTFTLVAPVQYVLQQVSSSYKMIPIAPKYYETHQNMSLAYNGVDQVCSLKKFTT
Ga0182165_102685723300015320Switchgrass PhyllosphereMARTFALIEPVQYVLQQVSCRYGTIPNAPKYYKTDRNISLGSNGVDWV
Ga0182165_110287613300015320Switchgrass PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSK
Ga0182148_112588923300015325Switchgrass PhyllosphereVARTFALIAPVQYILQQVSCSYETIPNAPKYYETHRNISSVSNGVDQVRWL*
Ga0182166_111081413300015326Switchgrass PhyllosphereVERTFTLIAPVLYDLQQVSCSYEMIPNASKYYETDRNISLGSNGVDWL
Ga0182131_104141313300015331Switchgrass PhyllosphereMA*TFALIAPVQFVLQQVKCGYETIPNAPKYYKTDRNNSIGSSGVDG
Ga0182131_109851113300015331Switchgrass PhyllosphereVARTFVIIAPVLYVLLQVSCSYETIPNAPKYYETDQNLSLGSNEVDWVR
Ga0182117_110337913300015332Switchgrass PhyllosphereMSRTFVLIEPVQYVLKQVSCSYETIPNAPKYYETHRNISLGSNGVDWVHS
Ga0182117_114047613300015332Switchgrass PhyllosphereVA*TLVLIALVQYVLQQVSCSDETIPNAPKYYETDRNISLG
Ga0182132_104781413300015334Switchgrass PhyllosphereTLIAPVHYVLQQVSCSYETIPNAPKYYETDRNINLGSNGVDGVR*
Ga0182132_110781913300015334Switchgrass PhyllosphereVARNFALIAPVQYVLQQVKCSYETIPNAPKYYETDRNISL
Ga0182116_103180013300015335Switchgrass PhyllosphereVARTFALIALVQYVLQQVSCSYETIVNAHKYYETDRNISSGSNGVDGARWL
Ga0182150_113929313300015336Switchgrass PhyllosphereMAQTFALIGPVQYVLRQVSCSYETFPNSPKYYIINQNVSLGSNGVDWVRSLRKIPM*LRGTNF
Ga0182149_107126413300015339Switchgrass PhyllosphereMARTFVLIEPVQYVLKQVSCSYRTIPNAPKYYEMHRNISLGSNGVDRVRPLRKI
Ga0182133_104055613300015340Switchgrass PhyllosphereVERTFTLIAPVLYDLQQVSCSYEMIPNASKYYETDRNISLG
Ga0182115_130463213300015348Switchgrass PhyllosphereMAQPFVLIAPVQYVLHQVSCSYETIPNVPKYYETDRNISLGSNGVD
Ga0182185_119010913300015349Switchgrass PhyllosphereVA*TFALIAPVQYVLQQVKCGYETIPNAPKYYKTDRNIS
Ga0182163_107248923300015350Switchgrass PhyllosphereVA*TFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNGVDWLRSL
Ga0182163_110269413300015350Switchgrass PhyllosphereVA*TFALIAPVQYVLQQVKCGYETIPNAPKYYETHRNISLG
Ga0182163_114402013300015350Switchgrass PhyllosphereMARTFALIELVQYVLQQVSCSYETIPNAPKYYETDRNISFGSNGVDW
Ga0182163_121613313300015350Switchgrass PhyllosphereVARTFALIALVQYVLQQISCSYETIPNAPKYYEMHQNISLG
Ga0182169_116809713300015352Switchgrass PhyllosphereVARTFALIAPVQYVLQQVSCSYETIPNAPIYYETDRNISLGSNGVEGVCWLRKNTTRLRGTNF
Ga0182169_117131913300015352Switchgrass PhyllosphereDFVAQTFALIAPVQYVLQKVSCSYETIPNAPKYYETHQNISLGCNGADWVHSL*
Ga0182169_118102333300015352Switchgrass PhyllospherePFALIAPVQYVLQQVSCSYETIPNAPKYYEMHQNISLGSNEVD*
Ga0182179_129259113300015353Switchgrass PhyllosphereVARPFVLIAPVQYVLRQLSCTYETIRNAPKYYETHRNIS
Ga0182167_105673813300015354Switchgrass PhyllosphereVAPTFALIALVQYFLKQVSCSYEMIPNAPKYYETDRNISLGSN
Ga0182167_135072813300015354Switchgrass PhyllosphereVA*TFALIAPVQYVLQQFKCSYETIPNAPKYYETDRNISLGSNRVDGV
Ga0182167_135161813300015354Switchgrass PhyllosphereVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGADWVCLLRKNADVASCHELLH*
Ga0182197_102494923300017408Switchgrass PhyllosphereVARTFALIALVQYVLQQVSCSYETIVNAHKYYETDRNISSGSNGVDGARWLR
Ga0182199_105156413300017412Switchgrass PhyllosphereVARTFVIIAPVLYVLLQVSCSYETIPNAPKYYETDQNLSLGSNEVDW
Ga0182199_119176513300017412Switchgrass PhyllosphereVAXTLVLIALVQYVLQQGSCSDETIPNAPKYYETDRNISLGSNGV
Ga0182195_107551013300017414Switchgrass PhyllosphereVAXTFALIAPVQYVLQQDLRSYETIPNAPKYYKMHRNIGIGSNGVD
Ga0182195_113246413300017414Switchgrass PhyllosphereVAQTFVLFAPIQYVLQQVSCSYETIPNAPKYYETHQNISLGCNGADW
Ga0182213_106254213300017421Switchgrass PhyllosphereVAXTFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNGVDWLRSLPKI
Ga0182213_115537113300017421Switchgrass PhyllosphereTFALIASVLSVLQQVSCSYETIPNAPKYYETHQNISLGCNGADWVHSLGKIPA
Ga0182201_105949813300017422Switchgrass PhyllosphereVARTFALIAPVQYVLQQVSCSYETIPNAPKYYEKDXNFSFGSNV
Ga0182200_106800213300017439Switchgrass PhyllosphereVAQTFALIAPVQYVLHHVSCNYETIPKAPKYYKTYXNMTLGSNGVDRVRPLRKIPMC
Ga0182198_115029813300017445Switchgrass PhyllosphereVARTFALIELVQYVLQQVSCSYETIPNAPKYYETDRNISFGS
Ga0182216_108055913300017693Switchgrass PhyllosphereMARTFALISPVQYVLQQVSCSYETIPNVPKYFKMDQNISLVSNVVDWV
Ga0182216_112860613300017693Switchgrass PhyllosphereMARTFALIEPVQYVLQLVSCSYGMIPNAPKYHKMDRNISLGSNGVDWVH
Ga0182178_100232813300020023Switchgrass PhyllosphereMAQTFALIAPVPFVLQQVLCSYKMIPNAPKYSGTQQNISLES
Ga0182178_100329423300020023Switchgrass PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSNGADWVCLLXKKSRR
Ga0182178_101334213300020023Switchgrass PhyllosphereMAQTFALIALVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGR
Ga0182118_10609213300020223Switchgrass PhyllosphereVAXTFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNGVDWLRSLP
Ga0182118_10962413300020223Switchgrass PhyllosphereVAXTFALIAPVQYVLQQVKCGYETIPNAPKYYKTDRNNSFGSNGVD
Ga0207680_1089503313300025903Switchgrass RhizosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDW
Ga0207641_1260073513300026088Switchgrass RhizosphereVARTFVLIAPVQYVLHQLSCTYETIPNAPKYYELHRNISLGSNGVDW
Ga0268328_100594413300028050PhyllosphereVAXTFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNGADWLR
Ga0268328_102261113300028050PhyllosphereMAQTFAIIAPVQYVLQQVSCSYETIPNASKYYETDQNISLG
Ga0268328_104323113300028050PhyllosphereVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYETDQNISLGSNGV
Ga0268328_106054023300028050PhyllosphereVARTFALIAQVQYVLQQVSCSYETIPNAPKYYETDRNISFGSNGVDWVRSLR
Ga0268344_100129923300028051PhyllosphereMARTFALIEPVQYVLQQVSCSFETIPNAPKYYEMHRNISFGSNGVDWVRSLSKIPT
Ga0268346_100175613300028053PhyllosphereVRRTFVLIAPVQYVLHQLSCTYETIPNAPKYYEMHQNIS
Ga0268306_100689313300028054PhyllosphereVAXTFALIAPVQYVLQQVSCNYETMPNAPKYYEMNRNIGIVSNGVDXVCSLQN
Ga0268352_103414423300028057PhyllosphereMVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYKTDRNISLGSNGVDGVR
Ga0268314_100893013300028061PhyllosphereVAXTFALIAPVQYVLQQVSCSYETMPNAPKYYEMNRNIGIVSNGV
Ga0268314_102403913300028061PhyllosphereVAPTFALIALVQYFLKQVSCSYETIPNAPKYYETDRNISLGSNAVDWVHSLRKILS
Ga0268314_103050113300028061PhyllosphereMAQTSVXIEPVEYVLQQVLCSYETIXNAPKYYKTDRNISLGSNGVDWVRLLRKIPT
Ga0268314_104071113300028061PhyllosphereRDFVAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETHQNISLGCKGADWVHSL
Ga0268314_104398913300028061PhyllosphereAKKSQRDFVARTFALITPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDGVHWL
Ga0268342_100120713300028062PhyllosphereVGRTFVLIAPVQYVLHQLSCTYETIPNAPKYYETHRNISLVS
Ga0268342_100224213300028062PhyllosphereVARTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISSGSNWVDQVRWL
Ga0268350_104823513300028063PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSNGADWVC
Ga0268340_106342613300028064PhyllosphereVGRTFVLIAPVQYILHQLSCTYETIPNAPKYYETHRNISLVSSGVDQ
Ga0268340_106981113300028064PhyllosphereAAVQYVLQKVSCSYEMIPNAPKYYETDRNISLGSNGAEWVCLLRKNPDVTSCHELLH
Ga0268355_100203613300028139PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGRIGCI
Ga0268355_101736713300028139PhyllosphereMAXTFALIAPVQYVLQQVSCSYETIPNAPKYYEMHQNISLGSNEVD
Ga0268347_100141333300028142PhyllosphereIVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYETDRNISLGCNGVDGVR
Ga0268347_101921513300028142PhyllosphereVAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETHQNIILGCNGADWVHSLXKI
Ga0268345_102101213300028144PhyllosphereVARTFALIAPVQYVLQQVSGSYEIIPNAPKYYETDRNISSGPSGVD
Ga0268354_101372413300028148PhyllosphereTFALIAPVLSVLQQVSCSYETIPNAPKYYETHQNISLGCNGADWLHSM
Ga0268353_10369413300028149PhyllosphereVARTFVIIAPVLYVLLQVSCSYETIPNAPKYYETDQNL
Ga0268343_101072413300028150PhyllosphereVGRTFVLIAPVQYVLHQLSCTYETIPNAPKYYEMHQNISLGSNGVD
Ga0268336_101133213300028152PhyllosphereRTFVLIEPVQYVLQQVLCSYETIPNAPNYYETHRNISLGSNGVDWVRSL
Ga0268336_102861213300028152PhyllosphereMARTFALIAPVQYVLHQVSCSYETIPKPPKYYETHRHISLGSNGVDRVWSLRK
Ga0268336_103061713300028152PhyllosphereVAQTFALIAPVLSVLQQVSCSYETIPNAPKYYETHQNISLGCNGADWVH
Ga0268320_100712923300028153PhyllosphereVARTLVLIAPVQYVLQQVLCNYETIPNAPKYYKMDRNISLGSKGRIGCVSYEKIPTXLRATN
Ga0268351_102004913300028246PhyllosphereMARTFALIAPVQYVLHQVSCSYEMIPNAPKYYETHRNISLGSNGVD
Ga0268312_100112313300028248PhyllosphereMARTFALITPVQYVLQPVSCSYETIPNPPKYYETDQNLSL
Ga0268312_101093613300028248PhyllosphereVAQTFALIAPVQYVLQQVSCSYETIPNAPKYYEMHQNISLGCKWGR
Ga0268324_102358713300028251PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTD
Ga0268316_100284323300028253PhyllosphereVAQTYVLIAAVQYVLQQVSCSYEMIPNAPKYYKTDRNISLGSNGVDS
Ga0268310_101113713300028262PhyllosphereVARTFALIAPVLSVLQQVSCSYETIPNAPKYYETHQNISLGCNGADWVHSL
Ga0268310_101188713300028262PhyllosphereVARTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDG
Ga0268317_101152813300028468PhyllosphereVAXTFALIAPVQYVLQQVSRSYETIPNAPKYYKMHRNIGIGSNG
Ga0268315_100443513300028472PhyllosphereKRDMVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDGVR
Ga0268315_102166013300028472PhyllosphereVGRTFVLIAPVQYILHQLSCTYETIPNAPKYYETHPNISLGSNGVDGVRSL
Ga0268331_100193213300028474PhyllosphereVAQTFALIAPVLSVLQQVSCSYETIPYAPKHYEVHQNISLGSNGVDQ
Ga0268331_101453513300028474PhyllosphereMARTCALIAPVQPILHRVLCSNETLPNAPKYYEMHQNMSLGSKGWIGCVRCEKFRCDFVARTFSLI
Ga0268327_100147613300028475PhyllosphereVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYETDRNISLGCNGVDGV
Ga0268327_100522813300028475PhyllosphereMAQTLALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGRIGCVRC
Ga0268327_101214023300028475PhyllosphereXTFVLIAPVQYVLQQVSRSYEMIPNAPKYFEMHQNIGIGSNGVDWLRSLRKIPT
Ga0268329_101138613300028476PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETDXNISLGSNGAD
Ga0268309_102206523300028477PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYETDRNISLGSN
Ga0268305_10439213300028525PhyllosphereVAXTLVLIALVQYVLQQGSCSDETIPNAPKYYETDRNISLGSDG
Ga0268305_10878923300028525PhyllosphereWGGSGALIAPVQYILQQVSCSYETIQNAPKYYETHRNISSVSNGVDQVRWL
Ga0268335_100812413300028527PhyllosphereMAQTFALIAPVQYVLPQVSCIYETIPNAPKYYKTDRNICLGSKGRIEC
Ga0268311_101267513300028529PhyllosphereMAQTFALIAPVQYVLQQVSCSYETIPNAPKYYKTDRNISLGSKGWIGCV
Ga0214488_113971613300032467Switchgrass PhyllosphereMAQTFALIAPVQYVLQQVSCSYETVPNAPKHYETHQNKSLGSNGVDQVLSL
Ga0214497_107911613300032689Switchgrass PhyllosphereFALIAPVLSVFQQVSCSYEMIPNATKYYEMHQNISLGCNRADWVHLL


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