Metagenome / Metatranscriptome Family F063895

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063895
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	51 residues
Representative Sequence	METPAKQTPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Number of Associated Samples	94
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	45.74 %
% of genes from short scaffolds (< 2000 bps)	96.12 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.419 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.682 % of family members)
Environment Ontology (ENVO)	Unclassified (26.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.643 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.17% β-sheet: 0.00% Coil/Unstructured: 57.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00248	Aldo_ket_red	1.55
PF13417	GST_N_3	0.78
PF00072	Response_reg	0.78
PF02685	Glucokinase	0.78
PF02798	GST_N	0.78
PF13458	Peripla_BP_6	0.78
PF13561	adh_short_C2	0.78
PF01494	FAD_binding_3	0.78
PF00211	Guanylate_cyc	0.78
PF01058	Oxidored_q6	0.78
PF00005	ABC_tran	0.78
PF01042	Ribonuc_L-PSP	0.78
PF00999	Na_H_Exchanger	0.78
PF13628	DUF4142	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.55
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.78
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.78
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	0.78
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.78
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.78
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.78
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.78
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	0.78
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	0.78
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	0.78
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.78
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.78
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	0.78
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.78
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
All Organisms	root	All Organisms	25.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
cellular organisms	root	All Organisms → cellular organisms	25.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	3.10 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.08 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.55 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.55 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.78 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.55 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.78 %
Stenotrophomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas	0.78 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.55 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Stenotrophomonas maltophilia group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group	0.78 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.42 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.55 %
Stenotrophomonas maltophilia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	0.78 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10150000	Not Available	602	Open in IMG/M
3300002245\|JGIcombinedJ26739_100275996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1567	Open in IMG/M
3300004082\|Ga0062384_101218332	Not Available	548	Open in IMG/M
3300005332\|Ga0066388_101556517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300005332\|Ga0066388_102621629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	918	Open in IMG/M
3300005332\|Ga0066388_104402113	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005363\|Ga0008090_15252998	Not Available	504	Open in IMG/M
3300005434\|Ga0070709_10880882	Not Available	707	Open in IMG/M
3300005436\|Ga0070713_102281475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300005764\|Ga0066903_102734855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	957	Open in IMG/M
3300006052\|Ga0075029_100283044	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1054	Open in IMG/M
3300006052\|Ga0075029_100983986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	582	Open in IMG/M
3300006057\|Ga0075026_100929502	Not Available	536	Open in IMG/M
3300006059\|Ga0075017_100915509	Not Available	681	Open in IMG/M
3300006102\|Ga0075015_100367197	Not Available	806	Open in IMG/M
3300006175\|Ga0070712_101989110	Not Available	509	Open in IMG/M
3300006176\|Ga0070765_101073119	Not Available	761	Open in IMG/M
3300006354\|Ga0075021_11045234	Not Available	534	Open in IMG/M
3300006893\|Ga0073928_10429286	Not Available	961	Open in IMG/M
3300009520\|Ga0116214_1056757	Not Available	1422	Open in IMG/M
3300009523\|Ga0116221_1407407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
3300010361\|Ga0126378_11756611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M
3300010366\|Ga0126379_12468246	Not Available	619	Open in IMG/M
3300010376\|Ga0126381_101845389	Not Available	872	Open in IMG/M
3300010379\|Ga0136449_101679394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	959	Open in IMG/M
3300010379\|Ga0136449_102076715	Not Available	835	Open in IMG/M
3300010379\|Ga0136449_103362294	Not Available	613	Open in IMG/M
3300011120\|Ga0150983_12438705	Not Available	638	Open in IMG/M
3300012582\|Ga0137358_10397744	Not Available	932	Open in IMG/M
3300012955\|Ga0164298_10693267	Not Available	713	Open in IMG/M
3300012961\|Ga0164302_11051266	Not Available	639	Open in IMG/M
3300012961\|Ga0164302_11428365	Not Available	566	Open in IMG/M
3300012971\|Ga0126369_13412622	Not Available	520	Open in IMG/M
3300012984\|Ga0164309_10342130	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300012984\|Ga0164309_10447449	Not Available	976	Open in IMG/M
3300012986\|Ga0164304_10155252	All Organisms → cellular organisms → Bacteria → Proteobacteria	1446	Open in IMG/M
3300012987\|Ga0164307_11487207	Not Available	572	Open in IMG/M
3300012989\|Ga0164305_11658613	Not Available	572	Open in IMG/M
3300016270\|Ga0182036_11074531	Not Available	666	Open in IMG/M
3300016270\|Ga0182036_11181974	Not Available	636	Open in IMG/M
3300016319\|Ga0182033_11789782	Not Available	557	Open in IMG/M
3300016357\|Ga0182032_10664205	All Organisms → cellular organisms → Bacteria → Proteobacteria	872	Open in IMG/M
3300016357\|Ga0182032_11499051	Not Available	585	Open in IMG/M
3300016387\|Ga0182040_10720682	Not Available	817	Open in IMG/M
3300016404\|Ga0182037_10291113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Stenotrophomonas → Stenotrophomonas maltophilia group → Stenotrophomonas maltophilia	1309	Open in IMG/M
3300016404\|Ga0182037_11667435	Not Available	568	Open in IMG/M
3300017822\|Ga0187802_10082916	Not Available	1196	Open in IMG/M
3300017822\|Ga0187802_10162608	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	854	Open in IMG/M
3300017823\|Ga0187818_10281522	Not Available	729	Open in IMG/M
3300017932\|Ga0187814_10160999	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	838	Open in IMG/M
3300017933\|Ga0187801_10010187	Not Available	3072	Open in IMG/M
3300017955\|Ga0187817_10075778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2098	Open in IMG/M
3300017955\|Ga0187817_10366714	Not Available	919	Open in IMG/M
3300017955\|Ga0187817_10815186	Not Available	596	Open in IMG/M
3300017970\|Ga0187783_10076379	All Organisms → cellular organisms → Bacteria → Proteobacteria	2466	Open in IMG/M
3300017970\|Ga0187783_11244898	Not Available	536	Open in IMG/M
3300017974\|Ga0187777_11321821	Not Available	530	Open in IMG/M
3300018058\|Ga0187766_10993015	Not Available	597	Open in IMG/M
3300020579\|Ga0210407_10404051	Not Available	1069	Open in IMG/M
3300020579\|Ga0210407_10687816	Not Available	794	Open in IMG/M
3300020579\|Ga0210407_10769905	Not Available	744	Open in IMG/M
3300020580\|Ga0210403_10437779	Not Available	1066	Open in IMG/M
3300020582\|Ga0210395_10699252	Not Available	758	Open in IMG/M
3300020582\|Ga0210395_10786140	Not Available	710	Open in IMG/M
3300020583\|Ga0210401_11125688	Not Available	643	Open in IMG/M
3300021168\|Ga0210406_10412655	Not Available	1080	Open in IMG/M
3300021168\|Ga0210406_11123808	Not Available	577	Open in IMG/M
3300021171\|Ga0210405_10150948	All Organisms → cellular organisms → Bacteria → Proteobacteria	1840	Open in IMG/M
3300021178\|Ga0210408_10975872	Not Available	657	Open in IMG/M
3300021180\|Ga0210396_10465831	Not Available	1108	Open in IMG/M
3300021180\|Ga0210396_10511039	Not Available	1050	Open in IMG/M
3300021180\|Ga0210396_11720869	Not Available	509	Open in IMG/M
3300021401\|Ga0210393_11346257	Not Available	571	Open in IMG/M
3300021402\|Ga0210385_10242426	Not Available	1322	Open in IMG/M
3300021403\|Ga0210397_10132078	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300021403\|Ga0210397_11310033	Not Available	563	Open in IMG/M
3300021404\|Ga0210389_10569095	Not Available	891	Open in IMG/M
3300021405\|Ga0210387_10826838	Not Available	818	Open in IMG/M
3300021405\|Ga0210387_11383956	Not Available	606	Open in IMG/M
3300021406\|Ga0210386_10316687	Not Available	1339	Open in IMG/M
3300021406\|Ga0210386_10529691	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300021407\|Ga0210383_11587483	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	539	Open in IMG/M
3300021420\|Ga0210394_10378622	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300021432\|Ga0210384_10931434	Not Available	770	Open in IMG/M
3300021433\|Ga0210391_11185227	Not Available	592	Open in IMG/M
3300021474\|Ga0210390_10554578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	966	Open in IMG/M
3300021474\|Ga0210390_10657323	Not Available	876	Open in IMG/M
3300021477\|Ga0210398_10422855	Not Available	1086	Open in IMG/M
3300021478\|Ga0210402_10745770	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300021479\|Ga0210410_11295388	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300021559\|Ga0210409_11563615	Not Available	536	Open in IMG/M
3300021560\|Ga0126371_11725099	Not Available	749	Open in IMG/M
3300022557\|Ga0212123_10472944	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300022557\|Ga0212123_10681718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	636	Open in IMG/M
3300025905\|Ga0207685_10748556	Not Available	535	Open in IMG/M
3300025915\|Ga0207693_10877935	Not Available	689	Open in IMG/M
3300025939\|Ga0207665_10334882	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300027570\|Ga0208043_1161519	Not Available	580	Open in IMG/M
3300027894\|Ga0209068_10358140	Not Available	827	Open in IMG/M
3300027895\|Ga0209624_10176166	Not Available	1418	Open in IMG/M
3300027898\|Ga0209067_10647003	Not Available	610	Open in IMG/M
3300027908\|Ga0209006_10059800	Not Available	3409	Open in IMG/M
3300028906\|Ga0308309_10915624	Not Available	761	Open in IMG/M
3300028906\|Ga0308309_11304606	Not Available	624	Open in IMG/M
3300028906\|Ga0308309_11849913	Not Available	510	Open in IMG/M
3300029636\|Ga0222749_10427089	Not Available	706	Open in IMG/M
3300029636\|Ga0222749_10674097	Not Available	566	Open in IMG/M
3300031057\|Ga0170834_105216377	Not Available	555	Open in IMG/M
3300031231\|Ga0170824_114313693	Not Available	1624	Open in IMG/M
3300031474\|Ga0170818_100984480	Not Available	1332	Open in IMG/M
3300031708\|Ga0310686_104016998	Not Available	1446	Open in IMG/M
3300031708\|Ga0310686_108268760	Not Available	1110	Open in IMG/M
3300031708\|Ga0310686_115311747	Not Available	982	Open in IMG/M
3300031718\|Ga0307474_10514093	Not Available	940	Open in IMG/M
3300031879\|Ga0306919_11276027	Not Available	557	Open in IMG/M
3300031890\|Ga0306925_11672342	Not Available	616	Open in IMG/M
3300031912\|Ga0306921_11617079	Not Available	704	Open in IMG/M
3300031942\|Ga0310916_11217401	Not Available	622	Open in IMG/M
3300031954\|Ga0306926_11789508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300031954\|Ga0306926_12801442	Not Available	527	Open in IMG/M
3300032059\|Ga0318533_11270581	Not Available	538	Open in IMG/M
3300032076\|Ga0306924_12348314	Not Available	539	Open in IMG/M
3300032160\|Ga0311301_10792810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1304	Open in IMG/M
3300032180\|Ga0307471_102092035	Not Available	711	Open in IMG/M
3300032261\|Ga0306920_101243676	Not Available	1074	Open in IMG/M
3300032261\|Ga0306920_101912795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	834	Open in IMG/M
3300032261\|Ga0306920_102808839	Not Available	663	Open in IMG/M
3300032261\|Ga0306920_104018918	Not Available	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.72%
Aquatic	Environmental → Aquatic	16.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.72%
Freshwater	Environmental → Aquatic → Freshwater	6.98%
Sediment	Environmental → Aquatic → Sediment	6.98%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.89%
Loam	Environmental → Terrestrial → Soil → Loam	14.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.10%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.33%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.10%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.78%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.53%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.20%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.43%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.65%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.88%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.33%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.55%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_101500001	3300001471	Forest Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRVVPIQTETD*
JGIcombinedJ26739_1002759964	3300002245	Forest Soil	RTSETAIMETPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRVVPIQTETD*
Ga0062384_1012183322	3300004082	Bog Forest Soil	MEMPPKQTSTASSEIVKLIRKLRWVGLEEKAEQLENELVQQATTDTVVSIQS
Ga0066388_1015565171	3300005332	Tropical Forest Soil	MEMPAKQGPAASSEMAKLIRKLRWVGLEEKAGLLAKEVKQQPATDTVLAIQSETD*
Ga0066388_1026216291	3300005332	Tropical Forest Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAIQSETD*
Ga0066388_1044021131	3300005332	Tropical Forest Soil	MEMPAKQRTPASSEIVKLIRKSRWAGLEEKAEHLEKELEQRTVTDTVVSIQNETD
Ga0008090_152529982	3300005363	Tropical Rainforest Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAVQSETD*
Ga0070709_108808822	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEMPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD**
Ga0070713_1022814751	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VMENLAKQRAPASSEIVKLICKLRWAGLEENAVQLEKKLERHTVTDAVVSIQNETD*
Ga0066903_1027348551	3300005764	Tropical Forest Soil	MEIMETAAKQATTAPREIVKLIRKLRWVGLEVAEQLEKELEEHAVTDTVVSVQV*
Ga0075029_1002830442	3300006052	Watersheds	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD*
Ga0075029_1009839861	3300006052	Watersheds	MEMPVKQTATASSEMVKLIRKLRWVGLEEKAEQLEKEL
Ga0075026_1009295021	3300006057	Watersheds	METPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQ
Ga0075017_1000990813	3300006059	Watersheds	MSSETVKLIRKLRWLGLEERAEQLEDELEQQAATDTMISIQSETD*
Ga0075017_1009155091	3300006059	Watersheds	MIMETPTKQAPPASSEIAKLIRKLRWVGLEEKAEQLEKQLQLHDTVVSVQNETD*
Ga0075015_1003671971	3300006102	Watersheds	MEMPIKQTATVSSEMVKLIRKLRWVGLEEKAEQLE
Ga0070712_1019891101	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	METVTKQAPTSSSEIVKLIRKLRWVGLEDKAKQLEKELEQHA
Ga0070765_1010731192	3300006176	Soil	METPEQAPTTCSDLVMRIRKLRWVGLEEKAEQLEKELERCAISERVVPIQNETD*
Ga0075021_110452341	3300006354	Watersheds	AIKARTRERTIMETPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD*
Ga0073928_104292862	3300006893	Iron-Sulfur Acid Spring	METPTKQALTASSDMVKLIRKLRWAGLEERAELLEKELEQHEVTDTVVSMQNETD*
Ga0116214_10567571	3300009520	Peatlands Soil	METPVEQTPADSSEIIKLIRKLRWVGLEERAEQLEKELGQLSVTEIVVSIQSETD*
Ga0116221_14074071	3300009523	Peatlands Soil	MEKVANQAPSSSSEIVKLIRKLRSVGSEAKAEQLEKELEQHAVTDTVVSIQNETD*
Ga0126378_117566111	3300010361	Tropical Forest Soil	MEMPAKQAPAASSEMVKLIRKLRWVGLEEKAELLAKEVDQQPATDTVLAIQSETD*
Ga0126379_124682461	3300010366	Tropical Forest Soil	METTTKQTPMASSDIVKLLRKLRWVGLEEKAEQLEKQLQQCSATETVVSIQGETD*
Ga0126381_1018453891	3300010376	Tropical Forest Soil	MEMPAKQTPAASSEMVKLIRKLRWVGLEEKAEQLE
Ga0136449_1016793941	3300010379	Peatlands Soil	MEKVANQAPSSSSEIVKLIRKLRSVGLEEKAEQLEKELEQHVVTDTVVSIQNETD*
Ga0136449_1020767151	3300010379	Peatlands Soil	MEMPARQTPAASSEIVKLIRKLRWVGLEEKAEQLENELEHQAAIDT
Ga0136449_1033622941	3300010379	Peatlands Soil	MEITANQTPAASNEIVKLIRKLRWVGLEEKAEQLE
Ga0150983_124387051	3300011120	Forest Soil	RERMIMETPAKQAPTASSEIVMLIRKLHWVGLEEKAEQLEKELEQRAVTDRVVPIQNDTD
Ga0137358_103977442	3300012582	Vadose Zone Soil	METPAKQAPTTCSDLVMRIRKLRWVGLEEKAELLEKELEQCAVTDRVGPMQNDTD*
Ga0164298_106932672	3300012955	Soil	MIMETPAKQAPTASSEIGMLIRKLSWVGLEEKAEQLERELKQ
Ga0164302_110512662	3300012961	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD*
Ga0164302_114283652	3300012961	Soil	METPAKQAPTTCSDLVMRIRKLRWVRLEEKAEQLEKELEQ
Ga0126369_134126222	3300012971	Tropical Forest Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAVQ
Ga0164309_103421301	3300012984	Soil	RTRARTVMENLAKQRAPASSEIVKLICKLRWAGLEEKAEQLEKELDRHTVTDTVVSIQNETD*
Ga0164309_104474492	3300012984	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELE*
Ga0164304_101552523	3300012986	Soil	METFAKQTPTSSSQIVQLVRKLRWVGLEEKAEQLEKELEQHAVTDTVVSIQNETD*
Ga0164307_114872072	3300012987	Soil	METVTKQAPTSSSEIVKLIRKLRWVGLEEKAEQLEKELEH
Ga0164305_116586132	3300012989	Soil	METVAKQAPTPPGEIVKLIRKLRWVGLEEKAEQLEKELEHSAVADRVVPIQNETD*
Ga0182036_110745311	3300016270	Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAIQSETD
Ga0182036_111819742	3300016270	Soil	METPAKQAPTASSEIVMLIRKLRWVGLEEKAERLEKELEQRAVTDRVVPIQVDTD
Ga0182033_117897821	3300016319	Soil	MIMETPAKQAPTASSEIVMLIRKLRWVGLEEKAERLEKELEQRAVTDRVVPIQVDTD
Ga0182032_106642052	3300016357	Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAKQLEKELEQLPATDTVLAIQSETD
Ga0182032_114990511	3300016357	Soil	MEMLAKKTPKASSEIIKLIHKLRWVGLEEEAEQLEKKLEQLAATDAAVPIQSETD
Ga0182040_107206824	3300016387	Soil	MEMPAKQTPAASSEMVKLIRKLRWVGLEEKAEQLEKELQQQPATDT
Ga0182037_102911131	3300016404	Soil	MEMPAKQTPAASSEMVKLIRKLRWVGLEEKAEQLEKELERQPATDTVL
Ga0182037_116674351	3300016404	Soil	MPAKQTPAASSEMVKLIRKLRWVGLEEKAELLAKEVEQQP
Ga0187802_100829161	3300017822	Freshwater Sediment	METPAKQTPTASSEIVMLIRKLRWVGLEEKAEQLEKELQLHDTIVSVQNETD
Ga0187802_101626082	3300017822	Freshwater Sediment	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0187818_102815221	3300017823	Freshwater Sediment	MEMPAKQAPAASSEIVKLIRKLRWAGLEEKAQRLEKELERQAVTDTVV
Ga0187814_101609992	3300017932	Freshwater Sediment	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDSVVPIQNETD
Ga0187801_100101874	3300017933	Freshwater Sediment	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQRAVTDRVVPIQNETD
Ga0187817_100757783	3300017955	Freshwater Sediment	METPAEQTPADSSEIIKLIRKLRWVGLEERAEQLEKELEQQSVTEIVVSIQSETD
Ga0187817_103667142	3300017955	Freshwater Sediment	MEMPVKQTATASSEMVKLIRKLRWVGLEEKAEQLEKELEQHAVTDTSIQNKTD
Ga0187817_108151862	3300017955	Freshwater Sediment	METHAKQAPTASSEIAKLIRKLRWVGLEEKAEQLEKELEEHAVTD
Ga0187783_100763792	3300017970	Tropical Peatland	METSAKLAPTCCSDLVMRIRKLRWVGLEEKAEQLEKELEQCALTDRVVPTQNDTD
Ga0187783_112448981	3300017970	Tropical Peatland	METPSKQTPSSEIAKLIHKLRWAGFEEKAEQLEKEFDQQSATDRLLGGFS
Ga0187777_113218211	3300017974	Tropical Peatland	MEMPPKQTPTASSEIVKLIHKLRWVGLEEKAEQLEKKLKQQAAADAVVPIQSETD
Ga0187766_109930151	3300018058	Tropical Peatland	MEMPAKQKPTASSEIVKLIHKLRWVGLEEKAEQLEKKLKQQAATDAVVPIQSETD
Ga0210407_104040511	3300020579	Soil	METPAKQTPTSSSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0210407_106878163	3300020579	Soil	METPAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIE
Ga0210407_107699051	3300020579	Soil	METPKQAPTTCSDLVMRIRKLRWVGLEEKAEQLEKELEQCAVSERVVPIQNETD
Ga0210403_104377791	3300020580	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD
Ga0210395_106992522	3300020582	Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITDRVVPIQNETD
Ga0210395_107861401	3300020582	Soil	METPAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNET
Ga0210401_111256881	3300020583	Soil	METVAKQTPTSSSEIVKLIRKLRWVGLEEKAEQLEKEL
Ga0210406_104126553	3300021168	Soil	TRERMIMETPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVTDRVVPIQNDT
Ga0210406_111238082	3300021168	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQ
Ga0210405_101509481	3300021171	Soil	MGMPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAV
Ga0210408_109758722	3300021178	Soil	METVTKQAPTSSNEIVKLIRKLRWVGLEEKAEQLEK
Ga0210396_104658313	3300021180	Soil	METPGKQAPTSCSDLVMRIRKLRWVGLEEKAEQLEKELERCAVTDRVGPIQIDTD
Ga0210396_105110391	3300021180	Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQS
Ga0210396_117208692	3300021180	Soil	METLAKQASIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD
Ga0210393_113462571	3300021401	Soil	MENPAKQRAPASSEIVKLIRKLRWAGLEEKAEQLE
Ga0210385_102424263	3300021402	Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRVVPIQTETD
Ga0210397_101320781	3300021403	Soil	METPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQR
Ga0210397_113100331	3300021403	Soil	METPAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD
Ga0210389_105690952	3300021404	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAERLEKELEQRAVIERVVPIQNETD
Ga0210387_108268382	3300021405	Soil	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELERSAVTDRVVPIQNETD
Ga0210387_113839562	3300021405	Soil	RTIMEMPIKQTATVSSEMVKLIRKLRWVGLEEKAEQLEKELEQHAVTDTVVSI
Ga0210386_103166871	3300021406	Soil	METPKQAPTTCSDLVMRIRKLRWVGLEEKAEQLEKELEQCAVTDRVVPLQDETD
Ga0210386_105296912	3300021406	Soil	MEMPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELERAVTDTV
Ga0210383_115874831	3300021407	Soil	METPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDR
Ga0210394_103786222	3300021420	Soil	METPAKQAPTTCSDLVMRIRKLRWVGSDEKAEQLEKELEQCAVSERVVPIQNETD
Ga0210384_109314341	3300021432	Soil	METPKQAPTTCSDLVMRIRKLRWVGLDEKAEQLEKELEQCAVSER
Ga0210391_111852271	3300021433	Soil	MELPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVIERVVPTQNETD
Ga0210390_105545781	3300021474	Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEESAITDRVVPIQNETD
Ga0210390_106573232	3300021474	Soil	METPKQAPTTCSDLVMRIRKLRWVGLEEKVEQLEKELEQCAVTDRVVPIQDETD
Ga0210398_104228551	3300021477	Soil	VETKARTSETAIMETPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRVVPIQTETD
Ga0210402_107457703	3300021478	Soil	ASSEIVKLICKLRWAGLEEKAEQLEKELDRHTVTDTVVSIQNETD
Ga0210410_112953881	3300021479	Soil	MEMPAKQTPATSSEIVKLIRKLRRAGLEDKAQQLEKELERHVVSDPVISIQSETD
Ga0210409_115636152	3300021559	Soil	METFAKQTPTSSSQIVQLVRKLRWVGLEEKAEQLEK
Ga0126371_117250992	3300021560	Tropical Forest Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEKVPATDTVLAIQSETD
Ga0212123_104729441	3300022557	Iron-Sulfur Acid Spring	METVAKQAPKSSSEKVKLIRKLRWVGLEEKAERLEKELEQHAVADTVVSI
Ga0212123_106817181	3300022557	Iron-Sulfur Acid Spring	METPTKQAPTASSDMVKLIRKLRWAGLEERAELLEKELEQHEVTDTVVSMQNETD
Ga0207685_107485562	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MEMPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQCAVSERVVPIQNETD
Ga0207693_108779353	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	METFAKQTPTSSSQIVKLIRKLRWVGLEEKAEQLEKELEQH
Ga0207665_103348822	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MENPAKQRAPASSEIVKLIRKLRWVGLEEKAEQLEKELEQRAAAAFPGPLLQR
Ga0208043_11615191	3300027570	Peatlands Soil	METPVEQTPADSSEIIKLIRKLRWVGLEERAEQLEKELGQLSVTEIVVSIQSETD
Ga0209068_103581402	3300027894	Watersheds	KARTRERTIMETPAKQTPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0209624_101761662	3300027895	Forest Soil	QTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRVVPIQTETD
Ga0209067_106470031	3300027898	Watersheds	MEMPAKQKLAASSEIVKLIRKLRWVGLEEKAEQLENELEHQAAIDTVVSTQ
Ga0209006_100598004	3300027908	Forest Soil	METPAKQTPTASSEIIMLIRKLRWAGLEEKAEQLEKELEQSAITNRV
Ga0308309_109156241	3300028906	Soil	METPEQAPTTCSDLVMRIRKLRWVGLEEKAEQLEKELERCAISERVVPIQNETD
Ga0308309_113046061	3300028906	Soil	AKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVTDRVVPIQNDTD
Ga0308309_118499132	3300028906	Soil	METLAKQASIASSEIVMLIRKLRWVGLEEKAEQLEKELEQ
Ga0222749_104270891	3300029636	Soil	METPAKQALTSCSDLVMRIRKLRWVGLEEKAEQLEKELEQCAVSERVVPIQNETD
Ga0222749_106740971	3300029636	Soil	METLAKQAPIASSEIVMLIRKLRWVGLEEKAEQLEKELEQR
Ga0170834_1052163771	3300031057	Forest Soil	METPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0170824_1143136931	3300031231	Forest Soil	MEMPAKQAPTASSEIVMLIRKLRWAGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0170818_1009844801	3300031474	Forest Soil	METPAKQTPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQSAVTDRVVPIQNETD
Ga0310686_1040169981	3300031708	Soil	MIMETPTKQAPPASSEIAKLIRKLRWVGLEEKAEQLEKQLQLHETVVSVQNETD
Ga0310686_1082687602	3300031708	Soil	METPAKQTPTASNEVVMLIRKLRWAGLEEKAEELEKELERSAVTDRVVPIQNETD
Ga0310686_1153117472	3300031708	Soil	MEMPAKQTPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVTDRVVPIQDETD
Ga0307474_105140931	3300031718	Hardwood Forest Soil	METPAKQALTSCSDLVMRIRKLRWVGLEEKAEQLEKELEQCAVTDRVVPLQDETD
Ga0306919_112760271	3300031879	Soil	METPVKQTPAASSEIIKLIRKLRWVGLEEEAEQLEKELEQQPA
Ga0306925_116723421	3300031890	Soil	MEMLAKKTPKASSEIIKLIHKLRWVGLEEKAEQLEKELEQQPA
Ga0306921_116170792	3300031912	Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAVQSETD
Ga0310916_112174011	3300031942	Soil	MIMETPAKQAPPASSEIVMLIRKLRWVGLEEKAERLEKELEQRAVTDRVVPIQVDTD
Ga0306926_117895082	3300031954	Soil	MEMPAKQTPAASSEMVKLFRKLRWVGLEEKAELLAKEVEQQPATDTVLAIQSETD
Ga0306926_128014422	3300031954	Soil	METPVKQTPAASSEIVKLVRKLRWVGLEEKAEQLEKELEQVPATDTVLAIQCETD
Ga0318533_112705812	3300032059	Soil	METSAKLALSCCSDLVMRIRKLRWVGLEEKAEQLEKELEQCALTDR
Ga0306924_123483141	3300032076	Soil	MEMLAKQTPAASSEMVKLIRKLRWVGLEEKAEQLEKKLEQQPATDTALAI
Ga0311301_107928101	3300032160	Peatlands Soil	METVANQTPKSSSEKVKLIRKLRWVGLEEKAEQLEKE
Ga0307471_1020920352	3300032180	Hardwood Forest Soil	MEMPAKQAPTASSEIVMLIRKLRWVGLEEKAEQLEKELEQRAVTDTV
Ga0306920_1012436763	3300032261	Soil	MDALPKQETTSNEMVKLIRKLRWARMEEKAEQLEKKLEQQAAM
Ga0306920_1019127952	3300032261	Soil	AAAKLAPTCCSDLVMRIRKLRWVGLEEKAEQLEKGLEQCAFTDRVVPIQNDTE
Ga0306920_1028088392	3300032261	Soil	METPVKQTSAASSEIVKLVRKLRWVGLEEKAKQLEKELEQLPATDTVLAIQSETD
Ga0306920_1040189182	3300032261	Soil	MVMPTKQTPSASSEIIKLIHKLRWAGLEDKAELLEKKLEQQSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063895

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences