Metagenome / Metatranscriptome Family F063910

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F063910
Family Type	Metagenome / Metatranscriptome
Number of Sequences	129
Average Sequence Length	82 residues
Representative Sequence	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Number of Associated Samples	112
Number of Associated Scaffolds	129

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.02 %
% of genes near scaffold ends (potentially truncated)	47.29 %
% of genes from short scaffolds (< 2000 bps)	79.84 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.938 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.853 % of family members)
Environment Ontology (ENVO)	Unclassified (27.907 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.612 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.02% β-sheet: 2.44% Coil/Unstructured: 58.54%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 129 Family Scaffolds
PF00589	Phage_integrase	10.08
PF14247	DUF4344	6.98
PF02518	HATPase_c	6.20
PF06411	HdeA	3.88
PF07885	Ion_trans_2	3.88
PF10011	DUF2254	2.33
PF00230	MIP	2.33
PF13545	HTH_Crp_2	0.78
PF13414	TPR_11	0.78
PF00196	GerE	0.78
PF04392	ABC_sub_bind	0.78
PF00300	His_Phos_1	0.78
PF03734	YkuD	0.78

COG ID	Name	Functional Category	% Frequency in 129 Family Scaffolds
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	2.33
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.78
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.78
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.94 %
Unclassified	root	N/A	48.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.94 %
Unclassified	root	N/A	48.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.94 %
Unclassified	root	N/A	48.06 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.06 %
Unclassified	root	N/A	48.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	41.09 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	30.23 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.28 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.55 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.33 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.55 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.78 %
Mesorhizobium alhagi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.06 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1.55 %
Rhizobium aegyptiacum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aegyptiacum	0.78 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.78 %
Rhizobium sullae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	0.78 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.78 %
Mesorhizobium alhagi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000041\|ARcpr5oldR_c003788	Not Available	1333	Open in IMG/M
3300001915\|JGI24741J21665_1003937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3404	Open in IMG/M
3300002568\|C688J35102_118354723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	551	Open in IMG/M
3300003371\|JGI26145J50221_1011311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	792	Open in IMG/M
3300004799\|Ga0058863_11903486	Not Available	555	Open in IMG/M
3300004801\|Ga0058860_12080991	Not Available	595	Open in IMG/M
3300004803\|Ga0058862_12704136	Not Available	763	Open in IMG/M
3300005162\|Ga0066814_10038671	Not Available	746	Open in IMG/M
3300005290\|Ga0065712_10110032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1844	Open in IMG/M
3300005290\|Ga0065712_10245394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	973	Open in IMG/M
3300005293\|Ga0065715_10058428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1055	Open in IMG/M
3300005339\|Ga0070660_101130641	Not Available	663	Open in IMG/M
3300005340\|Ga0070689_100368887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1208	Open in IMG/M
3300005355\|Ga0070671_100402242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1171	Open in IMG/M
3300005436\|Ga0070713_102152059	Not Available	541	Open in IMG/M
3300005438\|Ga0070701_10720902	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005439\|Ga0070711_100118391	Not Available	1955	Open in IMG/M
3300005455\|Ga0070663_102130095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium sullae	506	Open in IMG/M
3300005457\|Ga0070662_101524602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	576	Open in IMG/M
3300005468\|Ga0070707_100311208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1531	Open in IMG/M
3300005530\|Ga0070679_100224333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1839	Open in IMG/M
3300005536\|Ga0070697_100380258	Not Available	1223	Open in IMG/M
3300005546\|Ga0070696_100386751	Not Available	1091	Open in IMG/M
3300005549\|Ga0070704_100119622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2020	Open in IMG/M
3300005563\|Ga0068855_100028275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6705	Open in IMG/M
3300005843\|Ga0068860_101182892	Not Available	785	Open in IMG/M
3300006041\|Ga0075023_100052029	Not Available	1288	Open in IMG/M
3300006049\|Ga0075417_10519814	Not Available	599	Open in IMG/M
3300006059\|Ga0075017_100148351	Not Available	1668	Open in IMG/M
3300006059\|Ga0075017_100749031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	753	Open in IMG/M
3300006175\|Ga0070712_100966657	Not Available	736	Open in IMG/M
3300006579\|Ga0074054_12103298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	528	Open in IMG/M
3300009148\|Ga0105243_10320725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1412	Open in IMG/M
3300009156\|Ga0111538_10779566	Not Available	1211	Open in IMG/M
3300009174\|Ga0105241_10121110	Not Available	2107	Open in IMG/M
3300009551\|Ga0105238_11536063	Not Available	695	Open in IMG/M
3300010371\|Ga0134125_10280812	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300010373\|Ga0134128_10839110	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300010399\|Ga0134127_10336552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1468	Open in IMG/M
3300010400\|Ga0134122_10329055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1322	Open in IMG/M
3300010403\|Ga0134123_10439996	Not Available	1208	Open in IMG/M
3300012480\|Ga0157346_1019863	Not Available	577	Open in IMG/M
3300012495\|Ga0157323_1018029	Not Available	643	Open in IMG/M
3300012496\|Ga0157353_1019666	Not Available	641	Open in IMG/M
3300012500\|Ga0157314_1003620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1106	Open in IMG/M
3300012517\|Ga0157354_1071419	Not Available	544	Open in IMG/M
3300012899\|Ga0157299_10078838	Not Available	807	Open in IMG/M
3300012958\|Ga0164299_10092831	Not Available	1548	Open in IMG/M
3300012961\|Ga0164302_10189146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1254	Open in IMG/M
3300012985\|Ga0164308_10981879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	749	Open in IMG/M
3300012988\|Ga0164306_10017784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3847	Open in IMG/M
3300013104\|Ga0157370_11519471	Not Available	602	Open in IMG/M
3300013105\|Ga0157369_12073142	Not Available	577	Open in IMG/M
3300013308\|Ga0157375_10451822	Not Available	1451	Open in IMG/M
3300015201\|Ga0173478_10000585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6763	Open in IMG/M
3300015371\|Ga0132258_10145921	All Organisms → cellular organisms → Bacteria → Proteobacteria	5668	Open in IMG/M
3300015371\|Ga0132258_12660291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1249	Open in IMG/M
3300015371\|Ga0132258_12754276	Not Available	1226	Open in IMG/M
3300015372\|Ga0132256_100331631	All Organisms → cellular organisms → Bacteria → Proteobacteria	1612	Open in IMG/M
3300015373\|Ga0132257_100246829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2130	Open in IMG/M
3300015373\|Ga0132257_100287445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1972	Open in IMG/M
3300015374\|Ga0132255_103976879	Not Available	627	Open in IMG/M
3300019356\|Ga0173481_10280170	Not Available	765	Open in IMG/M
3300019361\|Ga0173482_10000081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13314	Open in IMG/M
3300019361\|Ga0173482_10002817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aegyptiacum	3776	Open in IMG/M
3300019362\|Ga0173479_10001691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4843	Open in IMG/M
3300019362\|Ga0173479_10281142	Not Available	748	Open in IMG/M
3300019362\|Ga0173479_10408759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300022883\|Ga0247786_1000439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7080	Open in IMG/M
3300022886\|Ga0247746_1001588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3823	Open in IMG/M
3300022893\|Ga0247787_1001511	Not Available	2328	Open in IMG/M
3300023077\|Ga0247802_1032335	Not Available	778	Open in IMG/M
3300023102\|Ga0247754_1028084	Not Available	1256	Open in IMG/M
3300023102\|Ga0247754_1073124	Not Available	811	Open in IMG/M
3300025321\|Ga0207656_10730792	Not Available	507	Open in IMG/M
3300025898\|Ga0207692_10147737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1343	Open in IMG/M
3300025912\|Ga0207707_10423752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1141	Open in IMG/M
3300025921\|Ga0207652_10022332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5233	Open in IMG/M
3300025921\|Ga0207652_10295691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1461	Open in IMG/M
3300025922\|Ga0207646_10859606	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300025924\|Ga0207694_11056904	Not Available	687	Open in IMG/M
3300025931\|Ga0207644_10355492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1190	Open in IMG/M
3300025935\|Ga0207709_11664389	Not Available	530	Open in IMG/M
3300025936\|Ga0207670_10650032	Not Available	869	Open in IMG/M
3300025940\|Ga0207691_11634818	Not Available	523	Open in IMG/M
3300026142\|Ga0207698_10003831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9104	Open in IMG/M
3300026719\|Ga0207438_100081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1187	Open in IMG/M
3300026758\|Ga0207559_105136	Not Available	522	Open in IMG/M
3300026769\|Ga0207492_100061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1785	Open in IMG/M
3300026785\|Ga0207496_101259	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300026792\|Ga0207499_100884	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300026806\|Ga0207546_103767	Not Available	557	Open in IMG/M
3300026884\|Ga0207455_1003191	All Organisms → cellular organisms → Bacteria → Proteobacteria	757	Open in IMG/M
3300026952\|Ga0207434_1000223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3595	Open in IMG/M
3300026995\|Ga0208761_1003098	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M
3300027036\|Ga0207467_1000484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2354	Open in IMG/M
3300027390\|Ga0207435_101460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1156	Open in IMG/M
3300027424\|Ga0209984_1045412	Not Available	638	Open in IMG/M
3300027424\|Ga0209984_1056686	Not Available	577	Open in IMG/M
3300027462\|Ga0210000_1006093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1757	Open in IMG/M
3300027552\|Ga0209982_1009621	Not Available	1430	Open in IMG/M
3300027617\|Ga0210002_1000480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5430	Open in IMG/M
3300027682\|Ga0209971_1038684	Not Available	1149	Open in IMG/M
3300027910\|Ga0209583_10000559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11516	Open in IMG/M
3300027910\|Ga0209583_10212375	Not Available	833	Open in IMG/M
3300027993\|Ga0247749_1000025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8021	Open in IMG/M
3300028381\|Ga0268264_11735109	Not Available	635	Open in IMG/M
3300028589\|Ga0247818_10134448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1608	Open in IMG/M
3300031446\|Ga0170820_13420445	Not Available	568	Open in IMG/M
3300031538\|Ga0310888_10300948	Not Available	916	Open in IMG/M
3300031538\|Ga0310888_10890000	Not Available	555	Open in IMG/M
3300031716\|Ga0310813_11350946	Not Available	660	Open in IMG/M
3300031720\|Ga0307469_10095861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2066	Open in IMG/M
3300031720\|Ga0307469_10492721	Not Available	1072	Open in IMG/M
3300031740\|Ga0307468_100376546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1072	Open in IMG/M
3300031740\|Ga0307468_102489137	Not Available	507	Open in IMG/M
3300031820\|Ga0307473_11157201	Not Available	573	Open in IMG/M
3300031854\|Ga0310904_10293843	Not Available	1026	Open in IMG/M
3300031854\|Ga0310904_11305715	Not Available	526	Open in IMG/M
3300032000\|Ga0310903_10127407	All Organisms → cellular organisms → Bacteria → Proteobacteria	1120	Open in IMG/M
3300032075\|Ga0310890_10125085	Not Available	1659	Open in IMG/M
3300032174\|Ga0307470_10104264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1633	Open in IMG/M
3300032205\|Ga0307472_100416490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1129	Open in IMG/M
3300032211\|Ga0310896_10023929	All Organisms → cellular organisms → Bacteria → Proteobacteria	2209	Open in IMG/M
3300033433\|Ga0326726_10052556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3566	Open in IMG/M
3300034090\|Ga0326723_0090293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1319	Open in IMG/M
3300034090\|Ga0326723_0173551	Not Available	951	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.34%
Host-Associated	Host-Associated	35.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.47%
Plants	Host-Associated → Plants	33.33%
Aquatic	Environmental → Aquatic	3.88%
Human	Host-Associated → Human	2.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.18%
Sediment	Environmental → Aquatic → Sediment	3.88%
Peat	Environmental → Terrestrial → Peat	2.33%
Digestive System	Host-Associated → Human → Digestive System	2.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.96%
Loam	Environmental → Terrestrial → Soil → Loam	13.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.33%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	13.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.33%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.43%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.43%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.43%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.43%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.10%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.33%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.33%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.33%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026711	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026719	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-11 (SPAdes)	Environmental	Open in IMG/M
3300026758	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06K4-12 (SPAdes)	Environmental	Open in IMG/M
3300026769	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)	Environmental	Open in IMG/M
3300026785	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5w-11 (SPAdes)	Environmental	Open in IMG/M
3300026792	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3-12 (SPAdes)	Environmental	Open in IMG/M
3300026806	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-10 (SPAdes)	Environmental	Open in IMG/M
3300026884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K5-12 (SPAdes)	Environmental	Open in IMG/M
3300026952	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-10 (SPAdes)	Environmental	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027036	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027390	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027993	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0037881	3300000041	Arabidopsis Rhizosphere	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN*
JGI24741J21665_10039375	3300001915	Corn Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGE
C688J35102_1183547231	3300002568	Soil	MSERIKSEPVSRRQAFSLLGMAAALSLVVPATIITATDAEARVGNPASAASIAGVNRRDRRRDRRYKKAPAATGEKKPPAAGEKQ*
JGI26145J50221_10113111	3300003371	Arabidopsis Thaliana Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGXKX*
Ga0058863_119034861	3300004799	Host-Associated	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEKK*
Ga0058860_120809911	3300004801	Host-Associated	NQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEKK*
Ga0058862_127041362	3300004803	Host-Associated	AFMLLGSAAALSLVVPATVMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0066814_100386712	3300005162	Soil	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKK
Ga0065712_101100322	3300005290	Miscanthus Rhizosphere	MSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN*
Ga0065712_102453942	3300005290	Miscanthus Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0065715_100584282	3300005293	Miscanthus Rhizosphere	MSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0070660_1011306412	3300005339	Corn Rhizosphere	SELRTTLTNTDPEGQEIVMNERIKLRLISRRQAFWLLTSAAALSVVAPVITATDAEARVGNPGSAVSIAGANRRDRRQDRRYKKSPTTPTTTGQGDKK*
Ga0070689_1003688871	3300005340	Switchgrass Rhizosphere	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN*
Ga0070671_1004022422	3300005355	Switchgrass Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTP
Ga0070713_1021520591	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTG
Ga0070701_107209022	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLLGTAAAFSVAVPVTIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKNTKSPTTTTPTTTGQGEKK*
Ga0070711_1001183911	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSERFNLKLISRRRAFTFLGSAAALSLAVPATMLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0070663_1021300951	3300005455	Corn Rhizosphere	LIRQLPIKGADFVVGKEVVKQEVVMNEKLKMISRRGAFMLLGAAAAFSVAVPVTIMTATDAEARIGNPGSAVSVAGANRRDRRQDRLDKNTKSPTTTTPTTSGQGEKK*
Ga0070662_1015246021	3300005457	Corn Rhizosphere	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPT
Ga0070707_1003112082	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKLKSDMISLRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEKK*
Ga0070679_1002243332	3300005530	Corn Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTPTTTGQG
Ga0070697_1003802582	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0070696_1003867513	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEK
Ga0070704_1001196222	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTTGQGEKK*
Ga0068855_1000282753	3300005563	Corn Rhizosphere	LRINQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0068860_1011828922	3300005843	Switchgrass Rhizosphere	MISRRGAFMLLGSAAALSLVVPATVMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0075023_1000520294	3300006041	Watersheds	MSERFNLELISRRRAFSFLGSAAALGLAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKNSPTTTSPTIPTTTGQKQ*
Ga0075417_105198141	3300006049	Populus Rhizosphere	MISRRGAFSLLGLAAAFSVAVPATVMMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTTTPTTTGQGEKK*
Ga0075017_1001483512	3300006059	Watersheds	MSEKIRLEMTSRRGAFSLLGLAAALSLVVPATMMTATDAKARVGNPASAVSVAGANRRDRRQDRRYKKKPTTSQEK*
Ga0075017_1007490312	3300006059	Watersheds	LELISRRGACSLLGLAAALSFVVPATVMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKAPIATDDKKTPTTTGQK*
Ga0070712_1009666572	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSERFNLKLISRRRAFTFLGSAAALSLAVPATMLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTAPGPTIPTTTGQK*
Ga0074054_121032981	3300006579	Soil	MSERFNLELISRRRAFSFLGSAAALGLAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKNTPAATEDKKTPTTTGQKQ*
Ga0105243_103207252	3300009148	Miscanthus Rhizosphere	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGDKK*
Ga0111538_107795663	3300009156	Populus Rhizosphere	LRINQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSP
Ga0105241_101211101	3300009174	Corn Rhizosphere	ISRRGAFMLLGSAAALSLVVPATLMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0105238_115360631	3300009551	Corn Rhizosphere	ISRRRAFMLLGTAAAFSVAVPVTIMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNTKSPTTTTPTTSGQGEKK*
Ga0134125_102808122	3300010371	Terrestrial Soil	MSEKYDLELISRRRAFSFLGLTAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0134128_108391101	3300010373	Terrestrial Soil	YNLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0134127_103365521	3300010399	Terrestrial Soil	VAMSERYDLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0134122_103290552	3300010400	Terrestrial Soil	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSTKTTPTTTGTGEKK*
Ga0134123_104399963	3300010403	Terrestrial Soil	MSEKYDLELISRRRAFSFLGLTAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEK
Ga0157346_10198631	3300012480	Arabidopsis Rhizosphere	MTLMWIKIDRVLSDKIRTTNSAKEVAMSEKIKSEVISRRGVFMLLGSAAALSLVVPATVMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKNPAATEDKKTPTTTIPTTTGQKQ*
Ga0157323_10180291	3300012495	Arabidopsis Rhizosphere	MISRRGAFMLLGSAAAFSVAVPVTIMTATDAQARVGNPASAVSVAGANRRDRRQDRRYKNTKSPTTTTPTTTGQEKK*
Ga0157353_10196662	3300012496	Unplanted Soil	MSERSNLELISRRRAFSFLGLAAAFSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNPAATEDKKTPTTTGQK*
Ga0157314_10036202	3300012500	Arabidopsis Rhizosphere	MSERYNLELISRRRAFSFLGSAAALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNPAATEDKKTPTTTIPTTTGQKQ*
Ga0157354_10714191	3300012517	Unplanted Soil	LISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKTPTTTTPTTTGQGEKK*
Ga0157303_102336172	3300012896	Soil	MSERFNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRY
Ga0157299_100788382	3300012899	Soil	VNQVTNKQPNGQEVAMSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0164299_100928311	3300012958	Soil	YDLELISRRRAFSFLGLTAALGVAMPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0164302_101891463	3300012961	Soil	MTEKLKSDMISRRGAFSLIGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEKK*
Ga0164308_109818791	3300012985	Soil	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTT
Ga0164306_100177847	3300012988	Soil	RRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0157370_115194712	3300013104	Corn Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEK
Ga0157369_120731422	3300013105	Corn Rhizosphere	GQEAAMSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0157375_104518221	3300013308	Miscanthus Rhizosphere	AFMLLGSAAALSLVVPATLMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK*
Ga0173478_100005851	3300015201	Soil	RAGVAMSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0132258_101459212	3300015371	Arabidopsis Rhizosphere	MALLSGKSRSPTNSPQEVTMSERFNLELISRRRAFSFLGSAAALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNPAATEDKKTPTTTIPTTTGQKQ*
Ga0132258_126602913	3300015371	Arabidopsis Rhizosphere	MSERYSLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK*
Ga0132258_127542761	3300015371	Arabidopsis Rhizosphere	MSKKLKSELISRRGAFSLLGLAAAFSLAVPVAVITATDAEARVGNPGSAVSVAGANRRDRRHDRRYKNTPAAMDDKKTPTTTIPTTTGQKQ*
Ga0132256_1003316311	3300015372	Arabidopsis Rhizosphere	MSEMSEKIKSEMMISRRGTFSLLGLAAAAIVVVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTTGQGEKK*
Ga0132257_1002468292	3300015373	Arabidopsis Rhizosphere	MSERFNLELISRRRAFAFLGSAAALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNPAATEDKKTPTTTIPTTTGQKQ*
Ga0132257_1002874451	3300015373	Arabidopsis Rhizosphere	MSEKLKSELISRRGAFSLLGLAAAFRLAVPVAVITATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKPTTTTPTTTGQGEKK*
Ga0132255_1039768792	3300015374	Arabidopsis Rhizosphere	MALLSGKSRSPTNSPQEVTMSERFNLELISRRRAFSFLGSAAALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSP
Ga0173481_102801701	3300019356	Soil	MSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGE
Ga0173482_100000817	3300019361	Soil	MSERYDLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0173482_100028176	3300019361	Soil	MSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0173479_100016912	3300019362	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0173479_102811421	3300019362	Soil	MSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPT
Ga0173479_104087591	3300019362	Soil	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQG
Ga0247786_10004393	3300022883	Soil	LRINQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0247746_10015881	3300022886	Soil	MSERYDLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0247787_10015111	3300022893	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0247802_10323352	3300023077	Soil	RAFSFLGSAAVALSVAVPATVLVATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0247754_10280841	3300023102	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKTPTTKTPTTTG
Ga0247754_10731241	3300023102	Soil	RAFSFLGLAAALGVAMPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0207656_107307921	3300025321	Corn Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTT
Ga0207692_101477371	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTG
Ga0207707_104237521	3300025912	Corn Rhizosphere	MSKRYNLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207652_100223327	3300025921	Corn Rhizosphere	YDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207652_102956913	3300025921	Corn Rhizosphere	NLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207646_108596062	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKLKSDMISLRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGTGEKK
Ga0207694_110569041	3300025924	Corn Rhizosphere	RGAFMLLGTAAAFSVAVPVTIMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNTKSPTTTTPTTSGQGEKK
Ga0207644_103554922	3300025931	Switchgrass Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTT
Ga0207709_116643891	3300025935	Miscanthus Rhizosphere	MTEKLKSDMISRRGAFSLLGLGAAFSLAVPAAIMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTT
Ga0207670_106500322	3300025936	Switchgrass Rhizosphere	VTNKQPNGQEVAMSERYDLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0207691_116348181	3300025940	Miscanthus Rhizosphere	MISRRGAFMLLGSAAALSLVVPATLMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGAGEKK
Ga0207698_1000383114	3300026142	Corn Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKSKGV
Ga0207489_1010442	3300026711	Soil	FRVNQVTNKQPNGQEVAMSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207438_1000812	3300026719	Soil	MSKRYNLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGQKN
Ga0207559_1051361	3300026758	Soil	MSERHNLELISRRRAFSFLGLAAALGVAMPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTPTTTG
Ga0207492_1000613	3300026769	Soil	DLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207496_1012591	3300026785	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGDKK
Ga0207499_1008841	3300026792	Soil	MSERYDLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207546_1037671	3300026806	Soil	MSERYNLELISRRRAFSFLGSAAVALSVAVPVTVLVATDAEARVGNPGSAVSVAGANRRDRRQDRRNKKSPNTPTTTGQGEKK
Ga0207455_10031912	3300026884	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPT
Ga0207434_10002236	3300026952	Soil	LRINQVTNKQPNGQEVAMSERYDLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0208761_10030982	3300026995	Soil	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGE
Ga0207467_10004844	3300027036	Soil	MSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0207435_1014602	3300027390	Soil	MSERYDLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0209984_10454121	3300027424	Arabidopsis Thaliana Rhizosphere	MSERYNLELISRRRAFSFLGSAAVALSVAVPVTVLVATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0209984_10566861	3300027424	Arabidopsis Thaliana Rhizosphere	MSEKYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0210000_10060932	3300027462	Arabidopsis Thaliana Rhizosphere	MSERYDLELISRRRAFSFLGSAAVALSVAVPVTVLVATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0209982_10096211	3300027552	Arabidopsis Thaliana Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEK
Ga0210002_10004808	3300027617	Arabidopsis Thaliana Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPT
Ga0209971_10386841	3300027682	Arabidopsis Thaliana Rhizosphere	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQG
Ga0209583_1000055919	3300027910	Watersheds	MSERFNLELISRRRAFSFLGSAVALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKTPTATEDKKTPTTTGQK
Ga0209583_102123752	3300027910	Watersheds	SERFNLELISRRRAFSFLGSAAALGLAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKNSPTTTSPTIPTTTGQKQ
Ga0247749_10000257	3300027993	Soil	MSERYNLELISRRRAFSFLGLTAALGVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0268264_117351091	3300028381	Switchgrass Rhizosphere	RFNLELISRRRAFSFLGSAAALGLVVPATVLIATDAGARVGNPASAVSVAGANRRDRRQDRRYKKTPTTASPTIPTTLGQKQ
Ga0247818_101344481	3300028589	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKS
Ga0170820_134204451	3300031446	Forest Soil	MSEKIETEVISRRRVFSLLGLAIASSLVVPATVMTATDAEARVGNPASAVSVAGANRRDRRQDRRYKKSPTTTPTTTGASEKK
Ga0310888_103009483	3300031538	Soil	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0310888_108900001	3300031538	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKTPTTKTPTTTGQGEKK
Ga0310813_113509462	3300031716	Soil	MSERYNLELISRRRAFSFLGMAAALSVAVPATVLIATDAEGRVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0307469_100958612	3300031720	Hardwood Forest Soil	MSERIKSELISRREAFSLLGLAAAFSVAVPVTIMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNTKSPTTTAPTTAGQGEKK
Ga0307469_104927211	3300031720	Hardwood Forest Soil	MSERYNLELISRRRAFSFLGLTAALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTTGQGEKK
Ga0307468_1003765461	3300031740	Hardwood Forest Soil	MSESIKSELISRRRAFSLLGLAAAASVVVPATMLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTT
Ga0307468_1024891372	3300031740	Hardwood Forest Soil	IRNDIAPRGFFLLGLAAAFSVAVPVTIMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTTTPTTTGQGEKK
Ga0307473_111572012	3300031820	Hardwood Forest Soil	MSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKKTPTTTTPT
Ga0310904_102938431	3300031854	Soil	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTT
Ga0310904_113057151	3300031854	Soil	MSERYNLELISRRRAFSFLGSAAVALSVAVPATLLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSP
Ga0310903_101274071	3300032000	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPVTVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGEKK
Ga0310890_101250852	3300032075	Soil	MSERYNLELISRRRAFSFLGLAAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPTTPTTTGQGDKK
Ga0307470_101042644	3300032174	Hardwood Forest Soil	MSERYNLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTTGQGEKK
Ga0307472_1004164901	3300032205	Hardwood Forest Soil	MSERFNLELISRRRAFSFLGSAAALSLAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNTPAATEDKKTPTTTGQK
Ga0310896_100239291	3300032211	Soil	MSERYDLELISRRRAFSFLGLTAALSVAVPATVLIATDAEARVGNPGSAVSVAGANRRDRRQDRRYKKSPKTPTTTGQGEKK
Ga0326726_100525564	3300033433	Peat Soil	MSERFNLELISRRRAFSFLGSAAALGLAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKNSPTTTSPTIPATTGQKQ
Ga0326723_0090293_459_716	3300034090	Peat Soil	MSERFNLELISRRRAFSFLGSAAALGLAVPATVLIATDAEARVGNPASAVSVAGANRRDRRQDRRYKNTPAATEDKKTPTTTGQK
Ga0326723_0173551_202_468	3300034090	Peat Soil	MSKRTKSELISRREAFSLLGLAAAFSVAVPVTIMTATDAEARVGNPGSAVSVAGANRRDRRQDRRYKNTPAAKEDKKTPTTTGQGEKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F063910

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences