Metagenome / Metatranscriptome Family F064306

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064306
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	58 residues
Representative Sequence	MRKVSEYERQAAECRKLAAQTKTPEQRKQLEDMADVWDRLARERRVGIVENKHDQA
Number of Associated Samples	61
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.56 %
% of genes near scaffold ends (potentially truncated)	26.56 %
% of genes from short scaffolds (< 2000 bps)	86.72 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.875 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (32.812 % of family members)
Environment Ontology (ENVO)	Unclassified (54.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.344 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.76% β-sheet: 0.00% Coil/Unstructured: 45.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF04392	ABC_sub_bind	3.91
PF06823	DUF1236	1.56
PF09361	Phasin_2	1.56
PF03401	TctC	0.78
PF13545	HTH_Crp_2	0.78
PF05231	MASE1	0.78
PF03330	DPBB_1	0.78
PF05532	CsbD	0.78
PF09274	ParG	0.78
PF00166	Cpn10	0.78
PF12680	SnoaL_2	0.78
PF13493	DUF4118	0.78
PF00561	Abhydrolase_1	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.91
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.78
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.78
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.78
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.78
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
All Organisms	root	All Organisms	28.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
cellular organisms	root	All Organisms → cellular organisms	27.34 %
Viruses	superkingdom	All Organisms → Viruses	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	27.34 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.31 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	1.56 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	1.56 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.78 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.78 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.88 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	1.56 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.78 %
Rhizobiales bacterium 64-17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	0.78 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1012310	Not Available	1377	Open in IMG/M
3300004633\|Ga0066395_10001621	All Organisms → cellular organisms → Bacteria → Proteobacteria	7836	Open in IMG/M
3300004633\|Ga0066395_10072819	Not Available	1588	Open in IMG/M
3300004633\|Ga0066395_10086827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1478	Open in IMG/M
3300004633\|Ga0066395_10379862	Not Available	791	Open in IMG/M
3300004633\|Ga0066395_10731201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	589	Open in IMG/M
3300005332\|Ga0066388_100333028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2164	Open in IMG/M
3300005332\|Ga0066388_100333179	Not Available	2164	Open in IMG/M
3300005332\|Ga0066388_100502669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1848	Open in IMG/M
3300005332\|Ga0066388_100993355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1404	Open in IMG/M
3300005332\|Ga0066388_101181676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1305	Open in IMG/M
3300005332\|Ga0066388_102479224	Not Available	942	Open in IMG/M
3300005332\|Ga0066388_102579226	Not Available	925	Open in IMG/M
3300005332\|Ga0066388_104494198	Not Available	710	Open in IMG/M
3300005332\|Ga0066388_106203445	Not Available	603	Open in IMG/M
3300005332\|Ga0066388_106244563	Not Available	601	Open in IMG/M
3300005332\|Ga0066388_108001098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	529	Open in IMG/M
3300005363\|Ga0008090_15872117	All Organisms → Viruses → Predicted Viral	1281	Open in IMG/M
3300005764\|Ga0066903_100194597	Not Available	3020	Open in IMG/M
3300005764\|Ga0066903_102603756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	980	Open in IMG/M
3300005764\|Ga0066903_102774357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300005764\|Ga0066903_103185355	Not Available	888	Open in IMG/M
3300005764\|Ga0066903_105217064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	687	Open in IMG/M
3300005764\|Ga0066903_106858220	Not Available	591	Open in IMG/M
3300006028\|Ga0070717_11057084	Not Available	739	Open in IMG/M
3300009792\|Ga0126374_10229086	Not Available	1198	Open in IMG/M
3300010046\|Ga0126384_10021667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4158	Open in IMG/M
3300010046\|Ga0126384_10756512	Not Available	866	Open in IMG/M
3300010048\|Ga0126373_10089719	Not Available	2820	Open in IMG/M
3300010048\|Ga0126373_10526306	Not Available	1228	Open in IMG/M
3300010048\|Ga0126373_10717875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300010048\|Ga0126373_10984621	Not Available	908	Open in IMG/M
3300010048\|Ga0126373_12349246	Not Available	593	Open in IMG/M
3300010358\|Ga0126370_11079789	Not Available	738	Open in IMG/M
3300010358\|Ga0126370_12130069	Not Available	551	Open in IMG/M
3300010359\|Ga0126376_11491614	Not Available	704	Open in IMG/M
3300010359\|Ga0126376_11619350	Not Available	680	Open in IMG/M
3300010360\|Ga0126372_10142644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1898	Open in IMG/M
3300010361\|Ga0126378_10087609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3035	Open in IMG/M
3300010361\|Ga0126378_11684441	Not Available	720	Open in IMG/M
3300010361\|Ga0126378_12293869	Not Available	616	Open in IMG/M
3300010361\|Ga0126378_12444021	Not Available	597	Open in IMG/M
3300010361\|Ga0126378_12723974	Not Available	565	Open in IMG/M
3300010362\|Ga0126377_12222073	Not Available	625	Open in IMG/M
3300010366\|Ga0126379_10919537	Not Available	978	Open in IMG/M
3300010366\|Ga0126379_11226153	Not Available	856	Open in IMG/M
3300010366\|Ga0126379_12191322	Not Available	654	Open in IMG/M
3300010376\|Ga0126381_100349839	Not Available	2042	Open in IMG/M
3300010376\|Ga0126381_101156199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300010376\|Ga0126381_102406932	Not Available	755	Open in IMG/M
3300012948\|Ga0126375_10264922	All Organisms → cellular organisms → Bacteria → Proteobacteria	1172	Open in IMG/M
3300012971\|Ga0126369_10669076	Not Available	1113	Open in IMG/M
3300012971\|Ga0126369_12472193	Not Available	605	Open in IMG/M
3300012971\|Ga0126369_13530980	Not Available	512	Open in IMG/M
3300016270\|Ga0182036_11940618	Not Available	500	Open in IMG/M
3300016294\|Ga0182041_10937389	Not Available	780	Open in IMG/M
3300016294\|Ga0182041_11525313	Not Available	616	Open in IMG/M
3300016319\|Ga0182033_10536287	Not Available	1010	Open in IMG/M
3300016319\|Ga0182033_11710507	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300016341\|Ga0182035_10746310	Not Available	855	Open in IMG/M
3300016357\|Ga0182032_10379647	Not Available	1138	Open in IMG/M
3300016357\|Ga0182032_11364267	Not Available	613	Open in IMG/M
3300016371\|Ga0182034_10367085	Not Available	1173	Open in IMG/M
3300016371\|Ga0182034_10649506	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300016371\|Ga0182034_10755440	Not Available	830	Open in IMG/M
3300016404\|Ga0182037_11028505	Not Available	719	Open in IMG/M
3300021560\|Ga0126371_10032941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4865	Open in IMG/M
3300021560\|Ga0126371_10147751	Not Available	2408	Open in IMG/M
3300021560\|Ga0126371_10198179	Not Available	2101	Open in IMG/M
3300021560\|Ga0126371_10298562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1737	Open in IMG/M
3300021560\|Ga0126371_10425859	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300021560\|Ga0126371_10712855	Not Available	1151	Open in IMG/M
3300021560\|Ga0126371_11247230	Not Available	878	Open in IMG/M
3300021560\|Ga0126371_11365331	Not Available	840	Open in IMG/M
3300021560\|Ga0126371_11440106	Not Available	819	Open in IMG/M
3300021560\|Ga0126371_12070570	Not Available	685	Open in IMG/M
3300021560\|Ga0126371_12241909	Not Available	659	Open in IMG/M
3300021560\|Ga0126371_12776157	Not Available	594	Open in IMG/M
3300021560\|Ga0126371_13192649	Not Available	554	Open in IMG/M
3300026494\|Ga0257159_1093930	Not Available	523	Open in IMG/M
3300027070\|Ga0208365_1019555	Not Available	869	Open in IMG/M
3300031231\|Ga0170824_101524385	Not Available	1018	Open in IMG/M
3300031543\|Ga0318516_10030062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2857	Open in IMG/M
3300031545\|Ga0318541_10726629	Not Available	554	Open in IMG/M
3300031545\|Ga0318541_10825877	Not Available	517	Open in IMG/M
3300031546\|Ga0318538_10391946	Not Available	751	Open in IMG/M
3300031573\|Ga0310915_10149820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1612	Open in IMG/M
3300031713\|Ga0318496_10067767	Not Available	1876	Open in IMG/M
3300031719\|Ga0306917_10325313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1191	Open in IMG/M
3300031719\|Ga0306917_10563398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 64-17	895	Open in IMG/M
3300031719\|Ga0306917_10573897	Not Available	887	Open in IMG/M
3300031719\|Ga0306917_10903514	Not Available	691	Open in IMG/M
3300031723\|Ga0318493_10110745	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300031744\|Ga0306918_10594238	Not Available	867	Open in IMG/M
3300031744\|Ga0306918_11297141	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031748\|Ga0318492_10762567	Not Available	520	Open in IMG/M
3300031753\|Ga0307477_10070504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2415	Open in IMG/M
3300031763\|Ga0318537_10039100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1704	Open in IMG/M
3300031770\|Ga0318521_10138125	Not Available	1375	Open in IMG/M
3300031780\|Ga0318508_1034442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1296	Open in IMG/M
3300031781\|Ga0318547_10082550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1803	Open in IMG/M
3300031833\|Ga0310917_10872329	Not Available	606	Open in IMG/M
3300031879\|Ga0306919_10223048	Not Available	1409	Open in IMG/M
3300031879\|Ga0306919_10585680	Not Available	861	Open in IMG/M
3300031890\|Ga0306925_10339899	Not Available	1612	Open in IMG/M
3300031890\|Ga0306925_10364615	Not Available	1551	Open in IMG/M
3300031896\|Ga0318551_10897264	Not Available	517	Open in IMG/M
3300031910\|Ga0306923_11687739	Not Available	655	Open in IMG/M
3300031912\|Ga0306921_10155075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2680	Open in IMG/M
3300031912\|Ga0306921_10218069	Not Available	2236	Open in IMG/M
3300031941\|Ga0310912_10110845	Not Available	2035	Open in IMG/M
3300031942\|Ga0310916_10268019	Not Available	1442	Open in IMG/M
3300031942\|Ga0310916_11224332	Not Available	620	Open in IMG/M
3300031942\|Ga0310916_11660393	Not Available	517	Open in IMG/M
3300031946\|Ga0310910_10994979	Not Available	655	Open in IMG/M
3300031946\|Ga0310910_11110137	Not Available	616	Open in IMG/M
3300031954\|Ga0306926_10386471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1728	Open in IMG/M
3300031954\|Ga0306926_10790992	Not Available	1144	Open in IMG/M
3300031954\|Ga0306926_11308926	Not Available	845	Open in IMG/M
3300032035\|Ga0310911_10346119	Not Available	858	Open in IMG/M
3300032059\|Ga0318533_10042475	All Organisms → cellular organisms → Bacteria	2998	Open in IMG/M
3300032060\|Ga0318505_10359903	Not Available	687	Open in IMG/M
3300032063\|Ga0318504_10647736	Not Available	508	Open in IMG/M
3300032076\|Ga0306924_11209920	Not Available	817	Open in IMG/M
3300032076\|Ga0306924_11827192	Not Available	632	Open in IMG/M
3300032205\|Ga0307472_100404066	Not Available	1144	Open in IMG/M
3300032261\|Ga0306920_102087001	Not Available	791	Open in IMG/M
3300033290\|Ga0318519_10826879	Not Available	570	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.25%
Loam	Environmental → Terrestrial → Soil → Loam	18.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.97%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.78%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	32.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.31%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10123102	3300000580	Forest Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK*
Ga0066395_100016218	3300004633	Tropical Forest Soil	MRKVLEYEQQAAECRQKAAQMKNPQQKKQLEDMADVWDRLARERRHGIVENNPDQT*
Ga0066395_100728191	3300004633	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPEQRQQLEDIADVWDRLARERRVGIIENKHDQA*
Ga0066395_100868272	3300004633	Tropical Forest Soil	MRKATEYERQAAECRQLAAQMKKSEQRKQLEDMADVWDRLARERRVGIVENNHDQARPQTEE*
Ga0066395_103798621	3300004633	Tropical Forest Soil	MRKVSEYEQQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK*
Ga0066395_107312011	3300004633	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHNQAQPQTEK*
Ga0066388_1003330282	3300005332	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQVKTPDQRRHLEDMADVWDRLARERRMGIVENKHDQA*
Ga0066388_1003331792	3300005332	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQAKTPKQRKQMEDMADVWDRLARERRVGIVENKHDPAQPQTEK*
Ga0066388_1005026691	3300005332	Tropical Forest Soil	MRCRGTAMRKVLEYEKQAVECRQTATQMKNPRLKKQLEDMADVWDRLARERRQGIVENNPDQT*
Ga0066388_1009933553	3300005332	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPEQRKQLEDMADVWDRLARERRVGIVENKHDQA*
Ga0066388_1011816763	3300005332	Tropical Forest Soil	MRKVLEYERQAAECRKLAAQIKTPEKRKQLEDMADVWDRLARERRQGVVENSPGQT*
Ga0066388_1024792241	3300005332	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKKPERRRQLEDMADVWDRLARERRQGIVENNPDQA*
Ga0066388_1025792263	3300005332	Tropical Forest Soil	MRKVLEYEREAAECRKLAAQMKTPEQRKRLEDMADVWDRLARERRVGIVEHKHDQAGSELEK*
Ga0066388_1044941982	3300005332	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPDQRKQLEDLADVWDRLARERRVGIVENKHDQA*
Ga0066388_1062034452	3300005332	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADMWDRLARERRQGIIENNPAS*
Ga0066388_1062445632	3300005332	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADVWDRLARERRQGIIENNPDS*
Ga0066388_1080010981	3300005332	Tropical Forest Soil	MRKVLEYERQAAECRKLAAQMKTLEQRKQLEGAAEVWDRLARERRVGIVENTHDQARPQTEK*
Ga0008090_158721171	3300005363	Tropical Rainforest Soil	SEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK*
Ga0066903_1001945974	3300005764	Tropical Forest Soil	MRKVSEYEQQAAECRQKAAQMENPQLKKQLEDMAAVWDRLARERRQGIVENNPNQT*
Ga0066903_1026037562	3300005764	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTPEKRKQLEDMADLWDRLARERRVGIVDNKHDQV*
Ga0066903_1027743571	3300005764	Tropical Forest Soil	MKKVAECERQAAECRQLAAEMKNPQQRKQLEDMAELWDRLARQRRQGIVENKHDQA*
Ga0066903_1031853552	3300005764	Tropical Forest Soil	MRKFSEYEQQAADCRKLAAQMKNAEQRKQLEDMADVWDRLARERRVGI
Ga0066903_1052170641	3300005764	Tropical Forest Soil	SEYERQAAECRKLAAQTKTPDQRKQLEDMADVWDRLARERRVGIVENKHDQA*
Ga0066903_1068582202	3300005764	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADLWDRLARERRQGIIENNPDS*
Ga0070717_110570843	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRKVSEYERQAAECRKLAAQMKTPEQRRRLEDMADVWDRLARERRMGIVENKHDQA*
Ga0126374_102290861	3300009792	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPEQRQQLEDIADVWDRLARERRVGIVENKHDQA*
Ga0126384_100216673	3300010046	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPEQRKQLEDMADVWDRLARERRVGIVGNKHDQA*
Ga0126384_107565122	3300010046	Tropical Forest Soil	MRKVSEYERQAAECLKLAAQMKKPEQRKQLEDMADVWDRLACERRHGVVENNHDQAQPQTEK*
Ga0126373_100897194	3300010048	Tropical Forest Soil	MRKATEYERQAAECRQLAAQMKKSEQRKQLEDMADVWERLARERRVGIVENNHDQARPQTEE*
Ga0126373_105263064	3300010048	Tropical Forest Soil	AECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK*
Ga0126373_107178751	3300010048	Tropical Forest Soil	MKKVAECERQAAECRQLAAEMKNPQQRKQLEDMAEVWDRLARQRRQGIVENKHDQA*
Ga0126373_109846212	3300010048	Tropical Forest Soil	MRKVLEYERNAAECRQMAAQMKDPQLKKRLEDMADVWDMLARERRQGVVENSPGQT*
Ga0126373_123492461	3300010048	Tropical Forest Soil	MRKVSEYERQAAACRKLAAQMKTPKQRKELEDAADVWDRLARERRRGIIEN
Ga0126370_110797891	3300010358	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADVWDRLARERRQGIIENNPDP*
Ga0126370_121300691	3300010358	Tropical Forest Soil	EYEREAAECRKLAAEMKASEQRKRLEDMADVWDRLACERRVGIVENTGGV*
Ga0126376_114916141	3300010359	Tropical Forest Soil	ERHAAECRQMAAQMNSPQLRKQLEDMADVWDRLARERRQGIVENNPDQA*
Ga0126376_116193501	3300010359	Tropical Forest Soil	MRKVLEYEREAAECRKLAAQMKTPEQRKQLEDMADVWDRLARERRVGIVENKHDQA*
Ga0126372_101426441	3300010360	Tropical Forest Soil	MRKVSEYEWQAAECRKLAAQMKTPEQRRHLEDMADVWDRLARERRMGIVENKHDQA*
Ga0126378_100876097	3300010361	Tropical Forest Soil	MRKVLEYEQQAAECRQKAAQMKNPQQKKQLEDMADVWDRLARERGQGIVETNPEQTW
Ga0126378_116844412	3300010361	Tropical Forest Soil	MKKVAECERQAAECRQLAAEMKNPQQRKQLEDMAEVWDRLARQRRQGIVENKHDQE*
Ga0126378_122938691	3300010361	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERLVGIVENTHNQAQPQTEK*
Ga0126378_124440212	3300010361	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPDQRKQLEDMADVWDRLARERRVGIVENKHDQA*
Ga0126378_127239742	3300010361	Tropical Forest Soil	AAECRKLAAQAKTPQQRKQMEDMADVWDRLARELRVGIVENKHDPAQPQTGK*
Ga0126377_122220731	3300010362	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQARPQTEK*
Ga0126379_109195371	3300010366	Tropical Forest Soil	ARKEDASLRSFRTVGSAMRKVSEYERQAAECRKLAAQTKTPEQTQQLEDIADVWDRLARERRVGIVENKHDQA*
Ga0126379_112261531	3300010366	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADVWDRLARERRQGIIENNPAS*
Ga0126379_121913221	3300010366	Tropical Forest Soil	MRRCDIPLGLLGTAMRKVSQYEREAAECRKLAAQMKTPEQRRHLEDMADVWDRLARERRMGIVENKHDQA*
Ga0126381_1003498393	3300010376	Tropical Forest Soil	MQKVSEYERQAAECRKLAAQAKTPQQRKQMEDMADVWDRLARERRVGIVENKHDPAQPQTGK*
Ga0126381_1011561991	3300010376	Tropical Forest Soil	MRKVLEYEREAAECRKLAAQMKTPEQRKRLEDMADVWDRLARERRVGIVEHKHDQAGSKLEK*
Ga0126381_1024069321	3300010376	Tropical Forest Soil	WGTAMRKVLEYEGEAAECRKLAAQMKIPEQRKRPEDMADVWDRLARERRQGIIENNPDS*
Ga0126375_102649221	3300012948	Tropical Forest Soil	TRMHVGNLELRNYAECLKLAAQMKKPEQRKQLEDMADVWDRLARERRHGIVENNHDQAQPQTEK*
Ga0126369_106690763	3300012971	Tropical Forest Soil	MRKVLEYEKQAVECRRSAAQMKNPQLKKQLEDMADVWDRLARERRQGIVENNPDQT*
Ga0126369_124721933	3300012971	Tropical Forest Soil	RTFLIIAEAVGETAMRKVSEYERQAAECRELAAQAKTPKQRKQMEDMADVWDRLARERRVGIVENKHDPAQPQTEK*
Ga0126369_135309801	3300012971	Tropical Forest Soil	MRKVSEYERQAAECRKLVAQTKTPDQRKQLEDLADVWDRLARERRVGIVEN
Ga0182036_119406182	3300016270	Soil	AMRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK
Ga0182041_109373891	3300016294	Soil	MRKVLEYERQAAECRKLAAQMRIPEKRKQLEDMADVWDRLARERRVGIVENKHDPHAALTRE
Ga0182041_115253131	3300016294	Soil	MRKVSEYERQAAECRKLAARMKTLEQRKQLEDAAEMWDRLARERRMGIVENKHDQA
Ga0182033_105362873	3300016319	Soil	MRKVSEYEREASECRKLAAQMKTPEKRKQLEDMADVWDRLARERPMGIVENKQEGA
Ga0182033_117105072	3300016319	Soil	RGSSWETAMRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEMWDKLARERRVGIVENKHDQA
Ga0182035_107463101	3300016341	Soil	MRCRGTAMRKVLEYEKQAVECRRTAAQMKNPQLKKQLEDMADVWDRLARERRQGIVENNPNQT
Ga0182032_103796474	3300016357	Soil	EYERQAAEYRKLAAQAKTLQQRKQLEDMADVWDRLARERRVGIVENKHEGA
Ga0182032_113642671	3300016357	Soil	MRKVSEYERQATECRKLAAQMKTPEQRKQLEDAAEVWDRLARERRVGIVENKHDQA
Ga0182034_103670852	3300016371	Soil	MRKISEYERQATECRKLAAQMKTPEQRKQLEDMADVWDRLARERRVGIVENKHD
Ga0182034_106495062	3300016371	Soil	MRKVLEYEGQAAECRKLAAQMNIPEQRKRFEDMADVWDRLARERRQGIVEKNPDS
Ga0182034_107554402	3300016371	Soil	MRKVLEYERQAAECRKLAAQIKIPEKRKQLEDMADVWDRLARERRVGIVENKHDQA
Ga0182037_110285052	3300016404	Soil	VKKIAEYERQAAECRLAAEMKNPTTKKATREDMADVWDRLARERRQGIVENNHNRAPPQT
Ga0126371_100329414	3300021560	Tropical Forest Soil	MRKVLEYEQQAAECRQKAAQMKNPQQKKQLEDMADVWDRLARERRHGIVENNPDQT
Ga0126371_101477512	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPEQRQQLEDIADVWDRLARERRVGIIENKHDQA
Ga0126371_101981794	3300021560	Tropical Forest Soil	MRKATEYERQAAECRQLAAQMKKSEQRKQLEDMADVWERLARERRVGIVENNHDQARPQTEE
Ga0126371_102985622	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTPEKRKQLEDMADLWDRLARERRVGIVDNKHDQV
Ga0126371_104258591	3300021560	Tropical Forest Soil	MRKVSEYEQQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK
Ga0126371_107128552	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRELAAQAKTPKQRKQMEDMADVWDRLARERRVGIVENKHDPAQPQTEK
Ga0126371_112472302	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPDQRKQLEDMADVWDRLARERRVGIVENKHDQA
Ga0126371_113653313	3300021560	Tropical Forest Soil	MRKVLEYEGEAAECRKLAAQMKIPEQRKRLEDMADLCLWDRLARERRQGIIENNPDS
Ga0126371_114401063	3300021560	Tropical Forest Soil	GTAMKKVAECERQAAECRQLAAEMKNPQQRKQLEDMAEVWDRLARQRRQGIIENKHDQA
Ga0126371_120705701	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQTKTPDQRKQLEDLADVWDRLARERRVGIVENKHDQT
Ga0126371_122419091	3300021560	Tropical Forest Soil	MRCSGTAMRKVLEYEKHAVECRQTAAQMKNPQLRKQLEDMADVWDRLARERRQGIVENNPDQTIISASA
Ga0126371_127761572	3300021560	Tropical Forest Soil	MRKVSEYERQAAECRKLAAQMKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQA
Ga0126371_131926492	3300021560	Tropical Forest Soil	MRKFSEYEQQAADCRKLAAQMKNAEQRKQLEDMADVWDRLARERRVGIVENSHDQAQPQTEK
Ga0257159_10939302	3300026494	Soil	MRKVSEYERQAAECRKLAAQKKTPEQRRHLEDMADVWDRLARERRMGIVENKHDQA
Ga0208365_10195551	3300027070	Forest Soil	MRKVSEYERQAAECRKLAAQMKTPEQRRHLEDMADVWDRLARERRMGIVENKHDQA
Ga0170824_1015243852	3300031231	Forest Soil	MRKVSEYERQAAECRKLAAQMKTPQQRRHLEDMADVWDRLARERRMGIVENKHDQA
Ga0318516_100300622	3300031543	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK
Ga0318541_107266291	3300031545	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEMWDRLARERRMGIVENKHDQA
Ga0318541_108258771	3300031545	Soil	MRKVSEYERQAAECRKLAAQAKTLQQRKQLEDMADLWDRLARERRVGIVENKYDQA
Ga0318538_103919462	3300031546	Soil	MRKVSEYERQAAECRKLAAQMNTPEQRRHLEDMADVWDRLARERRMGIVENKHDQV
Ga0310915_101498202	3300031573	Soil	MRKVSEYERQAAECRKLVAQMKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQV
Ga0318496_100677672	3300031713	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEMWDRLARERRVGIVENTHDQAQPQTEK
Ga0306917_103253131	3300031719	Soil	MRKVLEYEKQAVECRRTAAQMKNPQLKKQLEDMADVWDRLARERRQGIVENNPDQT
Ga0306917_105633982	3300031719	Soil	SEYERQAAECRKLVAQMKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQV
Ga0306917_105738972	3300031719	Soil	MRKVSEYEREASECRKLAAQMKTPEKRKQLEDMADVWDRLARERRVGIVENKHDQV
Ga0306917_109035142	3300031719	Soil	MRKVLEYERQAAECRKLAAQMRIPEKRKQLEDMADVWDRLARERRVGIVENKHDQA
Ga0318493_101107454	3300031723	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQ
Ga0306918_105942381	3300031744	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRLGIVENTHDQAQPQTEK
Ga0306918_112971412	3300031744	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEMWDKLARERRVGIVENKHDQA
Ga0318492_107625671	3300031748	Soil	MRKVSEYERQAAECRKLAAQMKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQV
Ga0307477_100705042	3300031753	Hardwood Forest Soil	MRKVSEYERQAAECRKLAAQMKTPEQRRRLEDMADVWDRLARERRMGIVENKHDQA
Ga0318537_100391002	3300031763	Soil	MRKVSEYERQAAECRKLVAQMKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQA
Ga0318521_101381252	3300031770	Soil	MRKVSEYERQAAECRKLAAQAKTLQQRKQLEDMADVWDRLARERRV
Ga0318508_10344421	3300031780	Soil	MRKVSEYERQAAECRKLAAQKKTPEQRRHLEDIADVWDRLARERRMGIVENKHDQA
Ga0318547_100825502	3300031781	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRMGIVENKHDQV
Ga0310917_108723291	3300031833	Soil	MRCRGTAMRKVLEYEKQAVECRRTAAQMKNPQLKKQLEDMADVWDRLARERRQGIVENNPDQT
Ga0306919_102230483	3300031879	Soil	MNKATEYERQAAECRQLAAQMKKPEQRKQMEDTAEIWERLARERRVGIVENKHDRAGSELEK
Ga0306919_105856803	3300031879	Soil	MRKISEYERQATECRKLAAQMKTPEQRKQLEDMADVWDRLARERRVGIVENKYDQA
Ga0306925_103398994	3300031890	Soil	WETAMRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHDQAQPQTEK
Ga0306925_103646151	3300031890	Soil	MRKVSEYEREASECRKLAAQMKTAEQRKQLEDMADMWDRLARQRRVGIVESKHDQA
Ga0318551_108972641	3300031896	Soil	MRKVSEYERQAAECRKLAAQMKTLEQIKQLEDAAEVWDRLARERRMGIVENKHDQA
Ga0306923_116877391	3300031910	Soil	MRRCDIARRTVGTAMRKVSEYERQAAECRKLAAQTKAPEQRQQLEDMADVWDRLARERRVGIVENKHDQA
Ga0306921_101550753	3300031912	Soil	RMRCRGTAMRKVLEYEKQAVECRRTAAQMKNPQLKKQLEDMADVWDRLARERRQGIVENNPDQT
Ga0306921_102180694	3300031912	Soil	MRKISEYERQATECRKLAAQMKTPEQRKQLEDMADVWDRLARERRVGIVESKHDQV
Ga0310912_101108453	3300031941	Soil	MRKVLEYERQAAKCRKLAAQIKIPEKRKQLEDMADVWDRLARERRVGIVESKHDQV
Ga0310916_102680192	3300031942	Soil	MRKVSEYEREASECRKLAAQMKTPEKRKQLEDMADVWDRLARERRVGIVENKHD
Ga0310916_112243322	3300031942	Soil	VKKIAEYERQAAECRLAAEMKNPTTKKATREDMADVWDRLARERRQGIVENNHNRAPPQTEKM
Ga0310916_116603931	3300031942	Soil	AMRKVSEYEREASECRKLAAQMKTAEQRKQLEDMADMWDRLARQRRVGIVESKHDQA
Ga0310910_109949791	3300031946	Soil	LIRTETWETAMRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRLGIVENTHDQAQPQTEK
Ga0310910_111101372	3300031946	Soil	MRKISEYERQATECRKLAAQMKTPEQRKQLEDMADVWDRLARERRVGIVENKHDQV
Ga0306926_103864714	3300031954	Soil	AECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRVGIVENTHNQAQPQTEK
Ga0306926_107909922	3300031954	Soil	MRKVSEYEREASECRKLAAQMKTPEKRKQLEDMADVWDRLARERRVGIVENKHDQA
Ga0306926_113089261	3300031954	Soil	MRKVSEYERQAAECRKLAAQMKTPEQRRHLEDVADVWDRLARERRMGIVENKHDQA
Ga0310911_103461191	3300032035	Soil	MRKVSEYERQAAECRKLAAQAKTLQQRKQLEDMADVWDRLAAERRVGI
Ga0318533_100424753	3300032059	Soil	MRKISEYERQATECRKLAAQMKTLEKRKQLEDMADVWDRLARERRVGIVESKHDQV
Ga0318505_103599031	3300032060	Soil	MRKVSEYERQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRMGIVENKHDQ
Ga0318504_106477361	3300032063	Soil	EYERQAAECRQLAAQMKKPEQRKQMEDTAEIWERLARERRVGIVENKHDRAGSELEK
Ga0306924_112099202	3300032076	Soil	TAVKKIAEYERQAAECRLAAEMKNPTTKKATREDMADVWDRLARERRQGIVENNHNRAPPQTEKM
Ga0306924_118271921	3300032076	Soil	WGTAMRKVLEYERQAAECRKLAAQMKTPEKREQLEDMADVWDRLARERRVGIVENKHDQA
Ga0307472_1004040662	3300032205	Hardwood Forest Soil	MRKASEYERQAAECRKLAAQMKTPEQRRRLEDMADVWDRLARERRMGIVENKHDQA
Ga0306920_1020870011	3300032261	Soil	MRKVLEYEGQAAECRKLAAQMNIPEQRKRFEDMADVWDRLARERRQGIVENNPDS
Ga0318519_108268791	3300033290	Soil	RQAAECRKLAAQMKTLEQRKQLEDAAEVWDRLARERRLGIVENTHDQAQPQTEK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064306

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences