Metagenome Family F064435

Basic Information
Family ID	F064435
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	48 residues
Representative Sequence	MAPSRRTPQSSQGDVPDIARAIEAMVAAMTQQSTAMMQQHEASMQR
Number of Associated Samples	8
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	6
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (89.844 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (52.344 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.30% β-sheet: 0.00% Coil/Unstructured: 52.70%
Feature Viewer

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Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF08284	RVP_2	24.22
PF03732	Retrotrans_gag	16.41
PF00078	RVT_1	13.28
PF00665	rve	3.91
PF01501	Glyco_transf_8	1.56
PF07727	RVT_2	1.56
PF14223	Retrotran_gag_2	1.56
PF13976	gag_pre-integrs	1.56
PF00201	UDPGT	0.78
PF05970	PIF1	0.78
PF00293	NUDIX	0.78
PF15159	PIG-Y	0.78
PF00108	Thiolase_N	0.78
PF00098	zf-CCHC	0.78
PF02992	Transposase_21	0.78
PF13963	Transpos_assoc	0.78
PF03081	Exo70	0.78
PF00982	Glyco_transf_20	0.78
PF05834	Lycopene_cycl	0.78
PF00069	Pkinase	0.78
PF13960	DUF4218	0.78
PF13966	zf-RVT	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	3.91
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	3.91
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	3.91
COG4584	Transposase	Mobilome: prophages, transposons [X]	3.91
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.12
COG1442	Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase	Cell wall/membrane/envelope biogenesis [M]	1.56
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.56
COG5597	N-acetylglucosaminyl transferase	Cell wall/membrane/envelope biogenesis [M]	1.56
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.78
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.78
COG0507	ATPase/5Ã¢â‚¬â„¢-3Ã¢â‚¬â„¢ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
All Organisms	root	All Organisms	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
cellular organisms	root	All Organisms → cellular organisms	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	10.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	8.59 %
Glycine	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	8.59 %
Glycine subgen. Soja	subgenus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.84 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	8.59 %
Glycine max	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006943\|Ga0099822_1002133	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	24287	Open in IMG/M
3300006943\|Ga0099822_1007500	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	14098	Open in IMG/M
3300006943\|Ga0099822_1041126	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2514	Open in IMG/M
3300021320\|Ga0214544_1000091	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	117959	Open in IMG/M
3300021320\|Ga0214544_1000172	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	100458	Open in IMG/M
3300021320\|Ga0214544_1000313	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	83289	Open in IMG/M
3300021320\|Ga0214544_1004045	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	29735	Open in IMG/M
3300021320\|Ga0214544_1006100	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	22633	Open in IMG/M
3300021320\|Ga0214544_1006170	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	22415	Open in IMG/M
3300021320\|Ga0214544_1007578	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	18907	Open in IMG/M
3300021320\|Ga0214544_1015812	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	7639	Open in IMG/M
3300021320\|Ga0214544_1018224	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	5927	Open in IMG/M
3300021321\|Ga0214542_1004571	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	27326	Open in IMG/M

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_100194026	3300006943	Root Nodules	MAPHRRTSQCSQGDAPDIARALEVMVVVMTQQSTAMMQQ*
Ga0099822_10021338	3300006943	Root Nodules	VIMAPPRRTYQSSQGNVPDIARAIEELVAVMTQQSIAMMQQHGA*
Ga0099822_100487512	3300006943	Root Nodules	MAPHRRNAQSSQGDAPDIARAIEAMVATMAQQSTAMMQQHEASMQRQAVSLE*
Ga0099822_100632324	3300006943	Root Nodules	MAPPRKTPQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHEASMQR
Ga0099822_100691015	3300006943	Root Nodules	MAPPCRTSQSSQGDVPDIARAIETMVETMTQQSTAMIQQHEALMQR*
Ga0099822_10070239	3300006943	Root Nodules	MAPPCRTSQSSQGDVPDIARAIEAMVTAMTQQSTAMMQQHETSMQR*
Ga0099822_10075002	3300006943	Root Nodules	MAPPRRTSQVSQGDVPDIARAIETLVVAMTQQSTAMMQ*
Ga0099822_100790613	3300006943	Root Nodules	MTPQRRNSQPSQDDAPDIARAIEAMVAAMAQQSTVMMQQHEASMQRQAASLEQ*
Ga0099822_100940417	3300006943	Root Nodules	MAPHHRTSQSSQGDVPNIARAIEVMMAAMTQQSTTMMQQHEASM*
Ga0099822_101024912	3300006943	Root Nodules	MAPPCRDTQPSQDDVPDIARAIEAMVAAMTQQSMAMMQQHEASM*
Ga0099822_10122719	3300006943	Root Nodules	MAPSRRTPQSSQGDVPDIAKAIEVMVAAMTQQSTTMMQ*
Ga0099822_10145132	3300006943	Root Nodules	MVFYVPVIMAPPRRDSQSSQGDVPDIARAIEAMVATMTQQSTVMMQQHEA*
Ga0099822_10158487	3300006943	Root Nodules	MVFFSVCQSIMAPHRRTSQSSQGDVPNIARAIEAMVAAMTQQSTTMIQQHEASMQRQVASL*
Ga0099822_10160071	3300006943	Root Nodules	MVPHRRTSQSSQGDAPDIARAIEAMVTAITQQSTAMMQQHEASMQRQAVSLEQE*
Ga0099822_101642714	3300006943	Root Nodules	MAPPCKTSQSSQGDEPDIARAIEAMVAAMTQQSTVMMQQHEDSMQQQAASLK*
Ga0099822_10179304	3300006943	Root Nodules	MVFSMPMTMAPPRRTSQSSLGDVPDIARAIEAMVAAMTQQSTTMMQQHEASIQR*
Ga0099822_10196827	3300006943	Root Nodules	MAPHRRNAQSSQGDAPDIARAIEAMVAAMAQQSTAMMQQHEASM*
Ga0099822_10202471	3300006943	Root Nodules	MAPSRRTPQSSQGDVRGIDRAIEAMVAAMTQQSTTMMQHHEALMQRQAGRLSNNS*
Ga0099822_102111211	3300006943	Root Nodules	MAPSRRTPQSSQGDVPDIARAIEAMVAAMTQQSTAMMQQHEASMQR*
Ga0099822_10215361	3300006943	Root Nodules	MAPHRKNSQSSQGDAPDIARAIEAMVAAMTQQSMAMMQ*
Ga0099822_10232832	3300006943	Root Nodules	MTPHRRNSQSSQGDVIDITKAIEAMVAAMTQQSMTMMQQHEASMQRHTASLEQQQLVM*
Ga0099822_10258255	3300006943	Root Nodules	MAPHRRTSQSSQGDAPDIARAIEAMVAAMTQQSTAMMQQHEASIQR*
Ga0099822_10277742	3300006943	Root Nodules	MAPQRRNSQPSQGDAPDIAKAIEAMVTAMTQQSTTMMQQHEASMQRQAASLEQQ*
Ga0099822_10316206	3300006943	Root Nodules	MAPSHRIPQSSQGDVQDIARAIEAMVAAMTHQSTVMMQQHEASMQ*
Ga0099822_10326836	3300006943	Root Nodules	MAPPRTTSQSSQGDVPDIAKAIEAIVAAMTQQSTAMMQ*
Ga0099822_10338351	3300006943	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVATMAQQSAAMMQQHEASM*
Ga0099822_10350352	3300006943	Root Nodules	MAPHHRTSQSSQGDAPDIARAIEAMVAAMIQQSTTMMQQHEASM*
Ga0099822_10359802	3300006943	Root Nodules	MAPPRRNSQSSQGDVPDIARAIEALMAAMTQHSTTMMQQHEASMQRHVASLE*
Ga0099822_10395782	3300006943	Root Nodules	MAPQRRNSQSSQGDALDIARAIEAMVAAMTQQSTSMMQQHEASMQ*
Ga0099822_10411261	3300006943	Root Nodules	MALPRRASQSSQGDTPDIARAIEAMVAAMAQQSTAMMQHHEASMQRQAASLEQ*
Ga0099822_10428744	3300006943	Root Nodules	MAPHRRTSQSSQGDAHDIARAIKAMVAAMTEQSMAMMQQHEASMQ*
Ga0099822_10475954	3300006943	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVAAMAQQSAAMMQ
Ga0099822_10497422	3300006943	Root Nodules	MAPPRRTPQSSQGDVPDIARAIEAMVVAMTQQRTAMMQ*
Ga0099822_10497693	3300006943	Root Nodules	MAPSRRTPQSSQGDLLDIARAIEAIVATMTQQSTTMMQQHEASMQRRAATIEQQQLVM*
Ga0099822_10535613	3300006943	Root Nodules	PQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHEASMQRQAASLEQQ*
Ga0099822_10547542	3300006943	Root Nodules	MIPPRRTPQSSQGDVPDITRVIEAMVATIMQQSTAMMHQHEASVQRQAASLE
Ga0099822_10578392	3300006943	Root Nodules	MTPPRRTSQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHGASMQRQATSLEQQ*
Ga0099822_10647404	3300006943	Root Nodules	RTQQFSPGNVPDISRAIEAMVSAMTQQSTTMMQQHEASM*
Ga0099822_10676532	3300006943	Root Nodules	MCQWTMAPPRRTSQSSQGDAPDIARAIEAMVATMAQQSAAMMQQHEASMQRQAASLEQQ*
Ga0099822_10678142	3300006943	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVAAMTQQSAAMMQQHEASMQRQAASLE*
Ga0099822_10723941	3300006943	Root Nodules	MGPHRKTSQSSQGDAPDIGKAIEEMLAAMTQESTTMMQQYEASMQRQAALLK*
Ga0099822_10786201	3300006943	Root Nodules	MAPPRRTPQSSQGDVPDIARAIEAMVAAMAQQGAAMMQQHEASMQRQA
Ga0099822_10822602	3300006943	Root Nodules	MAPPRRASQSSQGDTPDIARAIEAMVAAMTQQSAAMMQQHEASMQRQAASFEQ
Ga0099822_11114681	3300006943	Root Nodules	MAPPRRTPQSSEGDVPDITRVIEAMVATIMQQSTAMMHQHEASVQRQAASLE
Ga0099822_11142211	3300006943	Root Nodules	MCQRTMAPPRRTSQSSQGDTSDIARAMEAMVAAMTQQSAVMMQQHEASMQRQAAS
Ga0099823_10126047	3300006944	Root Nodules	MTPSRRTPQSSQGNVPDIARAIEAMVAAMTQQSTTMMQQHKASMQGQATALEQQQLVM*
Ga0099823_101451412	3300006944	Root Nodules	MAPSRRTPQSSQGDVPDIARAIEAMVAAMTQQSTTMMQ*
Ga0099823_10221112	3300006944	Root Nodules	MAPHRRTSQSSHGDAPDIARAIKAMVAVMTQQSTTMMQQHEASMQRQATSLEQ*
Ga0099823_10466642	3300006944	Root Nodules	MAPQRTSQGDAPDIIRAIEAMVAAMTQQSTSMMQQHEASMQ*
Ga0099823_10570221	3300006944	Root Nodules	VCQWTMAPPRRTSQSSQGDVPDIARAIEAMVATMAQQSAAMMQQHEASM*
Ga0099823_10574975	3300006944	Root Nodules	VCQWTMAPPRRASQSSQGDAPDIARAMEAMVAAMAQQSAAMMQQHEASMQQ*
Ga0099823_10778361	3300006944	Root Nodules	MAPQHRNFQPSQGDAPDIARAIEAMVAAMAQQSTTMMQ*
Ga0099823_11038942	3300006944	Root Nodules	MAPPRRTPQSSQGDVPDIARAIEAMVAAMAQQGAAMMQQHEASMQRQAASL
Ga0099823_11118391	3300006944	Root Nodules	MAPPRRTSQSSQGDAPDIARAIEAMVAPMAQQSAAMMQQHEASMQRQAASLEQ*
Ga0099823_11339633	3300006944	Root Nodules	RTQQFSPGNVPDISRAIEAMVSAMTQQSTTMMQQHEASMQ*
Ga0214544_10000913	3300021320	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVAAMTQQSRAMMQQHETSM
Ga0214544_100017249	3300021320	Root Nodules	MVPHRRTSQSSQGDAPDIARAIEAMVTAITQQSTAMMQQHEASMQRQAVSLEQE
Ga0214544_100022123	3300021320	Root Nodules	MAPPCRTPQSSQGDVPDIAMKIEAMVAAMMQQSTTMMQQHEASMQRQAASLELQ
Ga0214544_100024113	3300021320	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVGAMAQQSAAMMQQHEASMQR
Ga0214544_100031354	3300021320	Root Nodules	MAPHRRNTQSSQGDAPDIARAIKAMVAAMTQQSTAMMQQHEASMQRQAASLEQQLFCNAINGSC
Ga0214544_100034519	3300021320	Root Nodules	MTPPRRTSQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHEASMQ
Ga0214544_100057460	3300021320	Root Nodules	MAPSRRTPQSSQGDVRGIDRAIEAMVAAMTQQSTTMMQHHEALMQRQAGRLSNNS
Ga0214544_100121729	3300021320	Root Nodules	MAPHRRTSQCSQGDAPDIARALEVMVVVMTQQSTAMMQQ
Ga0214544_100161734	3300021320	Root Nodules	MAPPHKTQQSSQGDVPNIARAIEAMVAAMTQQSTTMM
Ga0214544_100193733	3300021320	Root Nodules	MAPPRRASQSSQGDVPDIARAIETMVAAMAQQSAAMMQQHEASMQR
Ga0214544_100240518	3300021320	Root Nodules	MTPQRRNSQPSQDDAPDIARAIEAMVAAMAQQSTVMMQQHEASMQRQAASLEQ
Ga0214544_100251629	3300021320	Root Nodules	MAPPRRNSQSSQGDVPDIARAIEALMAAMTQHSTTMMQQHEASMQRHVASLE
Ga0214544_100259022	3300021320	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVAAMAQQSAAMMQQHEASMQR
Ga0214544_10032801	3300021320	Root Nodules	MAPHRRTSQSSHGDAPDIARAIKAMVAVMTQQSTTMMQQHEASMQRQATSLEQ
Ga0214544_10036638	3300021320	Root Nodules	MAPSRRTPQSSQGDVPDIARAIEAMVAAMTQQSTTMMQ
Ga0214544_10040451	3300021320	Root Nodules	MAPPRRTSQVSQGDVPDIARAIETLVVAMTQQSTAMMQ
Ga0214544_100449210	3300021320	Root Nodules	MAPPRRTSQSSQGDAPDIAKAIEEMVAAMAQQSVTMM
Ga0214544_10049756	3300021320	Root Nodules	MVFYVPVIMAPPRRDSQSSQGDVPDIARAIEAMVATMTQQSTVMMQQHEA
Ga0214544_100523125	3300021320	Root Nodules	MAPPCRTSQSSQGDVPDIARAIEAMVTAMTQQSTAMMQQHETSMQR
Ga0214544_100528915	3300021320	Root Nodules	VTPHRRTSQFSQGDAPDIARAIEAMVAAMTQQNMAMM
Ga0214544_100541915	3300021320	Root Nodules	MAPHRRNAQSSQGDAPDIARAIEAMVATMAQQSTAMMQQHEASMQRQAVSLE
Ga0214544_100580711	3300021320	Root Nodules	MAPSRRTPQSSQGDVPDIAKAIEVMVAAMTQQSTTMMQ
Ga0214544_100606015	3300021320	Root Nodules	MAPPRKTPQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHEASMQRQAASLEQQ
Ga0214544_100609113	3300021320	Root Nodules	MAPSRRTLQSSQGDVSNIARAIEAMVAAMTQQSTVMMQQHEASMQR
Ga0214544_10061003	3300021320	Root Nodules	MAPSRRTPQSSQGDVPDIARAIEAMVAAMTQQSTAMMQQHEASMQR
Ga0214544_100617019	3300021320	Root Nodules	MAPHHRTSQSSQGDAPDIARAIEAMVAAMIQQSTTMMQQHEASM
Ga0214544_10062631	3300021320	Root Nodules	MAPRHRASQSSQGDAPYIARAIKAMVAAMAQQSAAMMQQHEASMQ
Ga0214544_100684513	3300021320	Root Nodules	MARYRRTPQSSQGDVPDIARAIEAMVAAMTQQSTTMMQQHEASMQR
Ga0214544_10072547	3300021320	Root Nodules	MAPPCRDTQPSQDDVPDIARAIEAMVAAMTQQSMAMMQQHEASM
Ga0214544_100757813	3300021320	Root Nodules	MAPPRRASQSSQGDAPDIARAMEAMVAAMAQQSAAMMQQHEASMQQ
Ga0214544_100779811	3300021320	Root Nodules	MCQWTMAPPRRTSQSSQGDAPDIARAIEAMVATMAQQSAAMMQQHEASMQRQAASLEQQ
Ga0214544_10086588	3300021320	Root Nodules	MVFFSVCQSIMAPHRRTSQSSQGDVPNIARAIEAMVAAMTQQSTTMIQQHEASMQRQVAS
Ga0214544_10089824	3300021320	Root Nodules	MAPLRRTFQPSQGDVPDIAKAIEAMVAAMTQQSMTMMQ
Ga0214544_10091262	3300021320	Root Nodules	MAPPRRASQSSQGDAPDIARAIEVMVAAMAQQSAAMMQQYETSMQRQTASLE
Ga0214544_10093235	3300021320	Root Nodules	MAPPCRTSQSSQGDVPDIARAIETMVETMTQQSTAMIQQHEALMQR
Ga0214544_10106265	3300021320	Root Nodules	MVFCVPVTMTPPCRTPQSSHYDVQDIAREIEAMVAAMTQQSTVIMQQHEASMQRQAPSLE
Ga0214544_101270417	3300021320	Root Nodules	MAPPCKTSQSSQGDEPDIARAIEAMVAAMTQQSTVMMQQHEDSMQQQAASLK
Ga0214544_10133691	3300021320	Root Nodules	MAPPRRTSQLSQGDVPDIAKAIEAMVAAMTQQSTAMMQQHKASMQRQTTSLEQ
Ga0214544_10134585	3300021320	Root Nodules	MAPHRRTSQSSQGDAHDIARAIKAMVAAMTEQSMAMMQQHEASMQ
Ga0214544_101374510	3300021320	Root Nodules	MAPQRTSQGDAPDIIRAIEAMVAAMTQQSTSMMQQHEASMQ
Ga0214544_10152804	3300021320	Root Nodules	MAPSRRTLQPSQGDVSDIARAIEAMVAAMTQQSTAMMQQHEASMQR
Ga0214544_10154544	3300021320	Root Nodules	MAPHRRNAQSSQGDAPDIARAIEAMVAAMAQQSTAMMQQHEASM
Ga0214544_10155359	3300021320	Root Nodules	MAPPRRTPQSSEGDVPDITRVIEAMVATIMQQSTAMMHQHEASVQRQAASLEQQQMVM
Ga0214544_10158124	3300021320	Root Nodules	MAPHRRTSQSSQGDAPDIARAIEAMVAAMTQQSTAMMQQHEASIQR
Ga0214544_10159171	3300021320	Root Nodules	MAPHRKNSQSSQGDAPDIARAIEAMVAAMTQQSMAMMQ
Ga0214544_10182249	3300021320	Root Nodules	MALPRRASQSSQGDTPDIARAIEAMVAAMAQQSTAMMQHHEASMQRQAASLEQ
Ga0214544_10183622	3300021320	Root Nodules	MTPHRRNSQSSQGDVIDITKAIEAMVAAMTQQSMTMMQQHEASMQRHTASLEQQQLVM
Ga0214544_10196062	3300021320	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVATMAQQSAAMMQQHEASM
Ga0214544_10199641	3300021320	Root Nodules	MGPHRKTSQSSQGDAPDIGKAIEEMLAAMTQESTTMMQQYEASMQRQAALLK
Ga0214544_10205524	3300021320	Root Nodules	MAPSHRIPQSSQGDVQDIARAIEAMVAAMTHQSTVMMQQHEASMQ
Ga0214544_10234201	3300021320	Root Nodules	MAPPRTTSQSSQGDVPDIAKAIEAIVAAMTQQSTAMMQ
Ga0214544_10242411	3300021320	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVAAMTQQSAAMMQQHEASMQRQAASLE
Ga0214544_10301192	3300021320	Root Nodules	MAPSRRTPQSSQGDLLDIARAIEAIVATMTQQSTTMMQQHEASMQRRAATIEQQQLVM
Ga0214544_10343041	3300021320	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVAAMAQQSAAMMQQ
Ga0214542_100457112	3300021321	Root Nodules	VIMAPPRRTYQSSQGNVPDIARAIEELVAVMTQQSIAMMQQHGA
Ga0214542_10080743	3300021321	Root Nodules	MAPPRRTSQSSQGDVPDIARAIEAMVATMTQQSKTMMQQHEASMQR
Ga0214542_100835214	3300021321	Root Nodules	MTPPRRTSQSSQGDVPDIARAIEAMVAAMAQQSAAMMQQHGASMQRQATSLEQQ
Ga0214542_10112894	3300021321	Root Nodules	MAPHHRTSQSSQGDVPNIARAIEVMMAAMTQQSTTMMQQHEASM
Ga0214542_10202784	3300021321	Root Nodules	MAPPRRTPQSSQGDVPDIARAIEAMVAAMAQQGAAMMQQHEASMQRQAASLE
Ga0214542_10205473	3300021321	Root Nodules	MASPRRTSQSSQGDVPDIARAIEAMVAAMTQQSAAMMQQHEASMQRQAVSLEQQ
Ga0214545_100025411	3300021324	Root Nodules	MAPHRRTSQSSQGDVPNIARAIEAMVAAMTQQSTTMIQQHEASMQRQVASL
Ga0214545_101167312	3300021324	Root Nodules	MTPPCRTPQSSHYDVQDIAREIEAMVAAMTQQSTVIMQQHEASMQRQAPSLEQ
Ga0214543_100348321	3300021327	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVAAMAQQSAAMMQQHEAS
Ga0214543_10159953	3300021327	Root Nodules	MAPPRRTPQSSQGDVPNIARAIEAMVAAMAQQSAAMMQQHEASMQRQAASLEQ
Ga0214543_10386133	3300021327	Root Nodules	MAPPRRTSQSSQGDLPDIARAIEAMVAAMTQQSTAIMQQHEAAMQRQAVSLEQQ
Ga0214543_10499331	3300021327	Root Nodules	MAPPRRTPQSSQGDVPDIARAIEAMVAAMAQQGAAMMQQHEASMQRQAA
Ga0214543_10637732	3300021327	Root Nodules	MCQWTMAPPRRTSQSSQGDVPDIARAIEAMVAAMTQQSAAMMQQ
Ga0209389_10115205	3300027296	Root Nodules	MVFSMPMTMAPPRRTSQSSLGDVPDIARAIEAMVAAMTQQSTTMMQQHEASIQR
Ga0209389_10696502	3300027296	Root Nodules	MAPPRRASKSSQGDAPDIARAIEAMVAAMTQQSAAMMQQHEASMQR
Ga0209389_11008311	3300027296	Root Nodules	MAPPRRASQSSQGDAPDIARAIEAMVAAMAQQSAA
Ga0209589_10003175	3300027357	Root Nodules	MAPSRRTPQSSQGDVPDIVRTIEAMVAAMTQQSTAMMQQHEASMQ
Ga0209589_10261894	3300027357	Root Nodules	QSSQGDVPDIARAIEAMVAAMAQQGAAMMQQHEASMQRQAASLE
Ga0209589_10382272	3300027357	Root Nodules	MCQWTMASPRRTSQSSQGDVPDIARAIEAMVAAMTQQSAAMMQQHEASMQRQAVSLEQQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F064435

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300021324	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4	Host-Associated	Open in IMG/M
3300021327	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2	Host-Associated	Open in IMG/M
3300027296	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes)	Host-Associated	Open in IMG/M
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated	Open in IMG/M

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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