Metagenome Family F064853

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F064853
Family Type	Metagenome
Number of Sequences	128
Average Sequence Length	48 residues
Representative Sequence	VEKKEEEKEKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK
Number of Associated Samples	68
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.50 %
% of genes near scaffold ends (potentially truncated)	28.91 %
% of genes from short scaffolds (< 2000 bps)	76.56 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (81.250 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (33.594 % of family members)
Environment Ontology (ENVO)	Unclassified (35.156 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (41.406 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.68% β-sheet: 0.00% Coil/Unstructured: 74.32%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF01844	HNH	41.41
PF13740	ACT_6	5.47
PF01564	Spermine_synth	4.69
PF04909	Amidohydro_2	3.12
PF00892	EamA	3.12
PF02738	MoCoBD_1	2.34
PF00072	Response_reg	1.56
PF05643	DUF799	1.56
PF13442	Cytochrome_CBB3	1.56
PF01026	TatD_DNase	1.56
PF13507	GATase_5	0.78
PF00037	Fer4	0.78
PF10518	TAT_signal	0.78
PF01799	Fer2_2	0.78
PF00528	BPD_transp_1	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG4380	Uncharacterized conserved protein, DUF799 domain	Function unknown [S]	1.56

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.25 %
Unclassified	root	N/A	18.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.25 %
Unclassified	root	N/A	18.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.25 %
Unclassified	root	N/A	18.75 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.28 %
Unclassified	root	N/A	18.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.78 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.78 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.78 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	36.72 %
Unclassified	root	N/A	18.75 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.78 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.78 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	36.72 %
Unclassified	root	N/A	18.75 %
Caldilineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.78 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.75 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	16.41 %
unclassified Aminicenantes	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes	0.78 %
unclassified Caldilineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae	0.78 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.78 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.75 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	7.81 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	7.81 %
Candidatus Aminicenantes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	0.78 %
Caldilineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae → Caldilineae bacterium	0.78 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.78 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.75 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	7.81 %
Desulfatiglans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans	3.12 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.78 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	0.78 %
Desulfoferrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoferrobacter	0.78 %
Candidatus Aminicenantes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	0.78 %
Caldilineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae → Caldilineae bacterium	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.75 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	7.81 %
Desulfatiglans anilini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	3.12 %
Desulfoferrobacter suflitae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoferrobacter → Desulfoferrobacter suflitae	0.78 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.78 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	0.78 %
Candidatus Aminicenantes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	0.78 %
Caldilineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae → Caldilineae bacterium	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000311\|WSSedA1Ba3DRAFT_1118066	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	506	Open in IMG/M
3300002961\|JGI11641J44799_10038618	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1392	Open in IMG/M
3300002961\|JGI11641J44799_10044352	Not Available	1288	Open in IMG/M
3300003432\|JGI20214J51088_10010007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6296	Open in IMG/M
3300003541\|JGI20214J51650_10006146	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7485	Open in IMG/M
3300003910\|JGI26437J51864_10002432	All Organisms → cellular organisms → Bacteria	4214	Open in IMG/M
3300004049\|Ga0055493_10010166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1317	Open in IMG/M
3300004051\|Ga0055492_10079640	Not Available	705	Open in IMG/M
3300004066\|Ga0055484_10035831	Not Available	1036	Open in IMG/M
3300004146\|Ga0055495_10008752	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508	Open in IMG/M
3300004481\|Ga0069718_15915781	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300004481\|Ga0069718_16264685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	5631	Open in IMG/M
3300005145\|Ga0068713_1028429	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2440	Open in IMG/M
3300005254\|Ga0068714_10084034	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1624	Open in IMG/M
3300005254\|Ga0068714_10109856	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1330	Open in IMG/M
3300005832\|Ga0074469_11058818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9662	Open in IMG/M
3300006224\|Ga0079037_100045385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3392	Open in IMG/M
3300006224\|Ga0079037_100095348	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300006224\|Ga0079037_100184836	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300006224\|Ga0079037_100554829	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300006224\|Ga0079037_100845133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	900	Open in IMG/M
3300006224\|Ga0079037_101102686	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300006224\|Ga0079037_101116842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	782	Open in IMG/M
3300006224\|Ga0079037_101654472	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300006224\|Ga0079037_101878108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	598	Open in IMG/M
3300006930\|Ga0079303_10005688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	3513	Open in IMG/M
3300006930\|Ga0079303_10291905	Not Available	672	Open in IMG/M
3300006930\|Ga0079303_10555747	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300007072\|Ga0073932_1001390	All Organisms → cellular organisms → Bacteria	45970	Open in IMG/M
3300009009\|Ga0105105_10053676	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300009009\|Ga0105105_10118999	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300009037\|Ga0105093_10005612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4971	Open in IMG/M
3300009037\|Ga0105093_10019718	All Organisms → cellular organisms → Bacteria → Proteobacteria	2833	Open in IMG/M
3300009037\|Ga0105093_10067342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1661	Open in IMG/M
3300009037\|Ga0105093_10631604	Not Available	609	Open in IMG/M
3300009053\|Ga0105095_10116794	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300009078\|Ga0105106_11374364	Not Available	501	Open in IMG/M
3300009081\|Ga0105098_10020253	All Organisms → cellular organisms → Bacteria	2537	Open in IMG/M
3300009087\|Ga0105107_10626989	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	748	Open in IMG/M
3300009091\|Ga0102851_10005904	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	7975	Open in IMG/M
3300009091\|Ga0102851_10426298	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300009091\|Ga0102851_10696757	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1074	Open in IMG/M
3300009131\|Ga0115027_10120683	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300009153\|Ga0105094_10887307	Not Available	526	Open in IMG/M
3300009166\|Ga0105100_10142726	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300009166\|Ga0105100_10227246	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300009167\|Ga0113563_10019383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5104	Open in IMG/M
3300009167\|Ga0113563_10048711	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3558	Open in IMG/M
3300009167\|Ga0113563_11062994	All Organisms → cellular organisms → Bacteria → Proteobacteria	935	Open in IMG/M
3300009167\|Ga0113563_11712809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	746	Open in IMG/M
3300009167\|Ga0113563_12022758	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	689	Open in IMG/M
3300009167\|Ga0113563_13602770	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300009167\|Ga0113563_13854129	Not Available	508	Open in IMG/M
3300009171\|Ga0105101_10041729	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2233	Open in IMG/M
3300009179\|Ga0115028_10330360	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300009179\|Ga0115028_10749090	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300009179\|Ga0115028_11665952	Not Available	549	Open in IMG/M
3300009509\|Ga0123573_10907285	Not Available	824	Open in IMG/M
3300010413\|Ga0136851_10759459	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
(restricted) 3300013125\|Ga0172369_10174744	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1264	Open in IMG/M
3300014313\|Ga0075347_1112178	Not Available	626	Open in IMG/M
3300014883\|Ga0180086_1167844	Not Available	571	Open in IMG/M
3300020048\|Ga0207193_1193494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1620	Open in IMG/M
3300022554\|Ga0212093_1037822	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2981	Open in IMG/M
3300025950\|Ga0210134_1000489	All Organisms → cellular organisms → Bacteria → Proteobacteria	5619	Open in IMG/M
3300025966\|Ga0210105_1000444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	6478	Open in IMG/M
3300027592\|Ga0209270_1055317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1337	Open in IMG/M
3300027690\|Ga0209164_1160459	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300027690\|Ga0209164_1209489	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	646	Open in IMG/M
3300027713\|Ga0209286_1036226	All Organisms → cellular organisms → Bacteria → Proteobacteria	1843	Open in IMG/M
3300027713\|Ga0209286_1099730	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1081	Open in IMG/M
3300027715\|Ga0208665_10067030	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300027723\|Ga0209703_1046733	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300027723\|Ga0209703_1132980	Not Available	942	Open in IMG/M
3300027792\|Ga0209287_10047130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300027792\|Ga0209287_10123581	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300027841\|Ga0209262_10291207	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300027871\|Ga0209397_10093178	All Organisms → cellular organisms → Bacteria → Proteobacteria	1246	Open in IMG/M
3300027871\|Ga0209397_10412231	Not Available	662	Open in IMG/M
3300027877\|Ga0209293_10186302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1010	Open in IMG/M
3300027885\|Ga0209450_10009895	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5097	Open in IMG/M
3300027887\|Ga0208980_10255728	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300027887\|Ga0208980_10688434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	579	Open in IMG/M
3300027955\|Ga0209078_1210642	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300031577\|Ga0316602_10030814	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300031949\|Ga0214473_10020383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	7755	Open in IMG/M
3300033406\|Ga0316604_10284950	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300033406\|Ga0316604_10523097	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300033408\|Ga0316605_10003674	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8686	Open in IMG/M
3300033408\|Ga0316605_10027076	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3771	Open in IMG/M
3300033408\|Ga0316605_10161229	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1837	Open in IMG/M
3300033408\|Ga0316605_11022830	Not Available	794	Open in IMG/M
3300033408\|Ga0316605_11217002	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300033408\|Ga0316605_11792162	Not Available	597	Open in IMG/M
3300033413\|Ga0316603_12065344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	538	Open in IMG/M
3300033414\|Ga0316619_10798888	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	806	Open in IMG/M
3300033416\|Ga0316622_100168881	All Organisms → cellular organisms → Bacteria → Proteobacteria	2300	Open in IMG/M
3300033416\|Ga0316622_100211480	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300033416\|Ga0316622_101650685	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300033416\|Ga0316622_101865423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	699	Open in IMG/M
3300033416\|Ga0316622_103291669	Not Available	510	Open in IMG/M
3300033418\|Ga0316625_100524705	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatiglans → Desulfatiglans anilini	942	Open in IMG/M
3300033418\|Ga0316625_101032231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium	735	Open in IMG/M
3300033418\|Ga0316625_101243493	Not Available	685	Open in IMG/M
3300033419\|Ga0316601_100819675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Desulfoferrobacter → Desulfoferrobacter suflitae	921	Open in IMG/M
3300033419\|Ga0316601_101581168	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300033419\|Ga0316601_101823329	Not Available	613	Open in IMG/M
3300033480\|Ga0316620_10106376	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300033480\|Ga0316620_10999605	Not Available	813	Open in IMG/M
3300033481\|Ga0316600_10136773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → unclassified Caldilineae → Caldilineae bacterium	1540	Open in IMG/M
3300033481\|Ga0316600_10491516	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	851	Open in IMG/M
3300033481\|Ga0316600_11301937	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300033482\|Ga0316627_100003464	All Organisms → cellular organisms → Bacteria → Proteobacteria	6053	Open in IMG/M
3300033482\|Ga0316627_100504463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1075	Open in IMG/M
3300033482\|Ga0316627_101192156	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300033483\|Ga0316629_10033335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2388	Open in IMG/M
3300033483\|Ga0316629_10175084	Not Available	1332	Open in IMG/M
3300033485\|Ga0316626_10083712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	2288	Open in IMG/M
3300033485\|Ga0316626_10188086	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1613	Open in IMG/M
3300033485\|Ga0316626_12145127	Not Available	507	Open in IMG/M
3300033487\|Ga0316630_10266613	Not Available	1301	Open in IMG/M
3300033488\|Ga0316621_10314602	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
3300033513\|Ga0316628_100771317	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
3300033513\|Ga0316628_101932620	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300033513\|Ga0316628_103515406	Not Available	566	Open in IMG/M
3300033557\|Ga0316617_101432983	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300033557\|Ga0316617_101793651	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300033557\|Ga0316617_102565155	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.31%
Engineered	Engineered	4.69%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.03%
Terrestrial	Environmental → Terrestrial	38.28%
Lab Enrichment	Engineered → Lab Enrichment	4.69%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	42.19%
Soil	Environmental → Terrestrial → Soil	35.16%
Marine	Environmental → Aquatic → Marine	10.16%
Defined Media	Engineered → Lab Enrichment → Defined Media	4.69%
Sediment	Environmental → Aquatic → Sediment	3.12%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	3.12%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.56%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	34.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	23.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.84%
Wetlands	Environmental → Aquatic → Marine → Wetlands	10.16%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	4.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	3.12%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.56%
Lake	Environmental → Aquatic → Freshwater → Lake	1.56%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.56%
Pond	Environmental → Aquatic → Freshwater → Pond	0.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	34.38%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	23.44%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	14.84%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	5.47%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.69%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	4.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	3.12%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.56%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.78%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.78%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	33.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	16.41%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	14.84%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	5.47%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	5.47%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.69%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	4.69%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	3.12%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.56%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.56%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.56%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.78%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.78%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.78%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.78%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.78%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000311	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004049	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2	Environmental	Open in IMG/M
3300004051	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2	Environmental	Open in IMG/M
3300004066	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D2	Environmental	Open in IMG/M
3300004146	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D2	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005145	Enrichment culture microbial communities om Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS2 (Arthur Kill Sulfidogenic replicate 2) MetaG	Engineered	Open in IMG/M
3300005254	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300007072	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC9 2012 metaG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental	Open in IMG/M
3300013125 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.25m	Environmental	Open in IMG/M
3300014313	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D1	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300022554	Dewar_combined assembly	Environmental	Open in IMG/M
3300025950	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025966	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027592	Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS1 (Arthur Kill Sulfidogenic replicate 1) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027690	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027955	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300031577	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedA1Ba3DRAFT_11180662	3300000311	Wetland	LSAMEKKKEEKEKPEMPAHVTIFDPENPPFVTQRLCIYLRELEEEKEHK*
JGI11641J44799_100386183	3300002961	Wetland	MEKKKEEKEKPEMPAHVTIFDPENPPFVTQRLCIYLRELEEEKEHK*
JGI11641J44799_100443521	3300002961	Wetland	MGEAMEKKREEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK*
JGI20214J51088_100100074	3300003432	Wetland	MEKKEEEKEKPEMPAHVTIFDPENPPFVTQRLCIYLRELEEEKEHK*
JGI20214J51650_100061464	3300003541	Wetland	MNVNRREKNEAGGFLSAMEKKEEEKEKPEMPAHVTIFDPENPPFVTQRLCIYLRELEEXKEHK*
JGI26437J51864_100024324	3300003910	Freshwater Lake Sediment	MSVTVGEKEEEKEKPEMPAHVKTFDPENPPFETQHLCIYLRELEEEKEHK*
Ga0055493_100101661	3300004049	Natural And Restored Wetlands	VTVIMEKKEEEKEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0055492_100796401	3300004051	Natural And Restored Wetlands	VIMEKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0055484_100358313	3300004066	Natural And Restored Wetlands	VTVIMDKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0055495_100087523	3300004146	Natural And Restored Wetlands	MDKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0069718_159157812	3300004481	Sediment	MTRIEEKKEEEKNKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK*
Ga0069718_162646851	3300004481	Sediment	AFTVEKKEEEKDKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEAKEKEE*
Ga0068713_10284294	3300005145	Enrichment Culture	VEKKEEEKAETQMPVHVTVFDPEKPLFETQHLCVYLRELDEEKEHK*
Ga0068714_100840342	3300005254	Enrichment Culture	VEDKKKDEQKEKPEIPSHIKTFDPQNPPFEAQHLCVYLSELEEEKEHK*
Ga0068714_101098562	3300005254	Enrichment Culture	MIATSGFDENKKEKSEVPVHVTVFDPEKPFFETQQLCVYLSELEEENEHK*
Ga0074469_110588187	3300005832	Sediment (Intertidal)	VTVIMEKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0079037_1000453851	3300006224	Freshwater Wetlands	VEKKEEEKEKPEMPAHVMVFDPEKPPFETLHLCIYLRELEDEKEHK*
Ga0079037_1000953483	3300006224	Freshwater Wetlands	NADGGFLSAMEKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK*
Ga0079037_1001848362	3300006224	Freshwater Wetlands	MIFNDVILHMTDTTEINKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK*
Ga0079037_1005548292	3300006224	Freshwater Wetlands	VIAMGETMENKKEEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK*
Ga0079037_1008451333	3300006224	Freshwater Wetlands	MSATSESSENENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK*
Ga0079037_1011026862	3300006224	Freshwater Wetlands	MTRIEGKKDVEEKKPELPEHVKTFDPENPPFETQRLCIYLRELEEEKERK*
Ga0079037_1011168421	3300006224	Freshwater Wetlands	MTATSGSIKNKNKKSEVPAQVMVFDPENPPFETLHLCIYLRELEEEKEHK*
Ga0079037_1016544722	3300006224	Freshwater Wetlands	MTATSESNEEKNKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEK
Ga0079037_1018781081	3300006224	Freshwater Wetlands	EKPEMPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK*
Ga0079303_100056886	3300006930	Deep Subsurface	MEKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEKEHK*
Ga0079303_102919051	3300006930	Deep Subsurface	KKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK*
Ga0079303_105557471	3300006930	Deep Subsurface	MENKKEGEKERPELPAHVKTFDPENPPFETLRFCVYLRELEEQSEHK*
Ga0073932_10013906	3300007072	Hot Spring Sediment	VENKKEGKKAEPEMPPHVTVFDPEKPAFETQHLCIYLSELEEEKEHK*
Ga0105105_100536762	3300009009	Freshwater Sediment	VENNKEEEKEKPELPAYVKTFDPENPPFETQHLCIYLRELEEEKEHK*
Ga0105105_101189991	3300009009	Freshwater Sediment	ERRAFTVEKKKEEKEKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEAKEKEE*
Ga0105093_100056124	3300009037	Freshwater Sediment	VEKKEEEKDKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEAKEKEE*
Ga0105093_100197183	3300009037	Freshwater Sediment	MKDEEKEKAEIPAHVTVFDPENPPFETLHLCIYLRELEEEKEHK*
Ga0105093_100673423	3300009037	Freshwater Sediment	VEKKEEEKEKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK*
Ga0105093_106316041	3300009037	Freshwater Sediment	VENNKKEEKEKPELPAYVKTFDPENPPFETQHLCIYLRELEEEKEHK*
Ga0105095_101167943	3300009053	Freshwater Sediment	VENNKEEEKEKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK*
Ga0105106_113743641	3300009078	Freshwater Sediment	VQKKEEEKDKPQMPAHVKTFDPENPPFELQHVCIFLSELEEAKEKEE*
Ga0105098_100202532	3300009081	Freshwater Sediment	VENNKEEEKERPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK*
Ga0105107_106269892	3300009087	Freshwater Sediment	TVEKKEEEKVEPRMPADVTVFDPEKPPFETQHLCSYLSELEEEKEHK*
Ga0102851_100059044	3300009091	Freshwater Wetlands	MTDTTEINKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK*
Ga0102851_104262982	3300009091	Freshwater Wetlands	MEKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK*
Ga0102851_106967572	3300009091	Freshwater Wetlands	MSPLEVLLYMTATSGSNEKGNKKPEVPAHVVVFDPENLPFETLHLCIYLRELEEEKEHK*
Ga0115027_101206832	3300009131	Wetland	MEKKEEDKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK*
Ga0105094_108873071	3300009153	Freshwater Sediment	MAVTVENIEEKEKPMLPAHAKTFDPEKPPFETLHLCMYLRELEEEKEHK*
Ga0105100_101427261	3300009166	Freshwater Sediment	KEEEKEKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK*
Ga0105100_102272461	3300009166	Freshwater Sediment	VQKKEEEKDKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEVKEKEE*
Ga0113563_100193837	3300009167	Freshwater Wetlands	RRFLVVEKKEEEKEKPEMPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK*
Ga0113563_100487113	3300009167	Freshwater Wetlands	MTATSGSIKNKNKKSEVPVQVMVFDPENPPFETLHLCIYLRELEEEKEHK*
Ga0113563_110629942	3300009167	Freshwater Wetlands	MTATSESIEKENKKSKVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK*
Ga0113563_117128092	3300009167	Freshwater Wetlands	VEKQEEEKEKPEMPAHVMTFDPENPPFEIQRLCIYLRELEEEKEHK*
Ga0113563_120227582	3300009167	Freshwater Wetlands	MSVTVGKKEEEKEKPEMPAHVKTFDPENPPFETQHLCIYLRELEEEKEHK*
Ga0113563_136027701	3300009167	Freshwater Wetlands	MTATSESIKKENKKYEVPTHVMVFDSEYPPFETLHLCI
Ga0113563_138541292	3300009167	Freshwater Wetlands	MGETMENKKEEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK*
Ga0105101_100417293	3300009171	Freshwater Sediment	MKDEEKEKAEIPAHVTVFDPENPPFETLHLCIYLRELEEEKEHN*
Ga0115028_103303602	3300009179	Wetland	MGETMENKKEEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEEEHK*
Ga0115028_107490903	3300009179	Wetland	MTATSESNEEKNKKSEVPAHVMVFDPENPPFETLHLCIYLRELE
Ga0115028_116659522	3300009179	Wetland	VRRLRKEVLIMENKKEGEKERPELPAHVKTFDPENPPFETLRFCVYLRELEEQSEHK*
Ga0123573_109072852	3300009509	Mangrove Sediment	MDKKEEEKEKPKVPGQAAVFEPQTPPFETLHLCDYLRELEEEKEHK*
Ga0136851_107594591	3300010413	Mangrove Sediment	MDKKEEEKEKPEVPGQAAVFDPQKPPFETLHLCNYLRELEEEKEHK*
(restricted) Ga0172369_101747442	3300013125	Freshwater	VEDREEEEKVEQRIPGHGMVFDPENPPFETQRLCIYLRELEEGKERK*
Ga0075347_11121782	3300014313	Natural And Restored Wetlands	MEKKEEEKEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK*
Ga0180086_11678441	3300014883	Soil	KKGEEKEKLEMRGHVNTFDPENPPYQTQRLCVYLRELEEERDKEESEKKP*
Ga0207193_11934943	3300020048	Freshwater Lake Sediment	VENNKEEEKEKPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK
Ga0212093_10378223	3300022554	Hot Spring Sediment	VENKKEGKKAEPEMPPHVTVFDPEKPAFETQHLCIYLSELEEEKEHK
Ga0210134_10004896	3300025950	Natural And Restored Wetlands	RSPVMEKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK
Ga0210105_10004443	3300025966	Natural And Restored Wetlands	VTVIMDKKEEKQEKSEVPKPVTVFDPQKPPFETLHLCNYLRELEEEKEHK
Ga0209270_10553172	3300027592	Enrichment Culture	VEKKEEEKAETQMPVHVTVFDPEKPLFETQHLCVYLRELDEEKEHK
Ga0209164_11604592	3300027690	Enrichment Culture	VEDKKKDEQKEKPEIPSHIKTFDPQNPPFEAQHLCVYLSELEEEKEHK
Ga0209164_12094892	3300027690	Enrichment Culture	EPRIPAHVMVFDPEKPVFETQHLCVYLRELEEENEHK
Ga0209286_10362262	3300027713	Freshwater Sediment	VEKKEEEKDKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEAKEKEE
Ga0209286_10997302	3300027713	Freshwater Sediment	VEMKDEEKEKAEIPAHVTVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0208665_100670302	3300027715	Deep Subsurface	MSVTVGEKEEEKEKPEMPAHVKTFDPENPPFETQHLCIYLRELEEEKEHK
Ga0209703_10467331	3300027723	Freshwater Sediment	EEKEKAEIPAHVTVFDPESPPFETLHLCIYLRELEEEKEHK
Ga0209703_11329802	3300027723	Freshwater Sediment	VQKKEEEKDKPQMPAHVKTFDPENPPFEIQHVCIFLSELEEAKEKEE
Ga0209287_100471302	3300027792	Freshwater Sediment	VQKKEEEKDKPQMPAHVKTFDPENPPFELQHVCIFLSELEEAKEKEE
Ga0209287_101235812	3300027792	Freshwater Sediment	VENNKEEEKERPELPAHVKTFDPENPPFETQRLCIYLRELEEEKEHK
Ga0209262_102912072	3300027841	Freshwater	MAVIVEKKEEEKEKPEMPAHVKTFDPENPPFQPLRLCIYLRELEEEKEHK
Ga0209397_100931782	3300027871	Wetland	MSATSESSENENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0209397_104122312	3300027871	Wetland	MIFNDVILHMTDTTEINKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK
Ga0209293_101863023	3300027877	Wetland	MTDTTEINKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK
Ga0209450_100098953	3300027885	Freshwater Lake Sediment	VEMKDEEKEKAKIPAHVTVFDPENLPFETLHLCIYLRDLEKEKEHK
Ga0208980_102557282	3300027887	Wetland	MENKDEKREKPEMPPHVQTFDPENPPFSTHHLCIYLRELEEEKEQK
Ga0208980_106884342	3300027887	Wetland	EEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK
Ga0209078_12106422	3300027955	Freshwater Sediment	VEMKDEEKEKAEIPAHVTVFDPENPPFETLHLCIYLRELEE
Ga0316602_100308142	3300031577	Soil	MNATSESIENENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0214473_100203834	3300031949	Soil	MAVIVEKKEEEREKPEVPPHVTVFDPEKLPYQTLHLCIYLRELEEEKEHK
Ga0316604_102849502	3300033406	Soil	VIAMGETMENKKEEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK
Ga0316604_105230971	3300033406	Soil	MENKKEGEKERPELPAHVKTFDPENPPFETLRFCVYLRELEEQSEHK
Ga0316605_100036748	3300033408	Soil	VILHMTDTTEINKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK
Ga0316605_100270761	3300033408	Soil	KNKNKKSEVPAQVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316605_101612294	3300033408	Soil	MTATSESNEEKNKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316605_110228302	3300033408	Soil	MSPLEVVLYMTATSGSTEKKNKKSEVPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316605_112170021	3300033408	Soil	MTATRGSNEKGNKKPEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316605_117921621	3300033408	Soil	MEKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316603_120653442	3300033413	Soil	KEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316619_107988881	3300033414	Soil	VEKKEEQESKPEIPANVTVFDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316622_1001688813	3300033416	Soil	MTATSESNEKKNKKFEVPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316622_1002114802	3300033416	Soil	VEKQEEEKEKPEMPAHVMTFDPENPPFEIQRLCIYLRELEEEKEHK
Ga0316622_1016506852	3300033416	Soil	MEKKEEEKEKPDIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316622_1018654232	3300033416	Soil	EKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316622_1032916691	3300033416	Soil	EIFSMSVTVGKKEEEKEKPEMPAHVKTFDPENPPFETQHLCIYLRELEEEKEHK
Ga0316625_1005247053	3300033418	Soil	MTATSGSSEKENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEE
Ga0316625_1010322312	3300033418	Soil	MEVEEKKPELPEHVKTFDPENPPFETQRLCIYLRELEEEKEHK
Ga0316625_1012434931	3300033418	Soil	MTATSGSNEKGNKKPEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316601_1008196751	3300033419	Soil	MSMTAGKKEEEKEKPEMPAHVKTFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316601_1015811682	3300033419	Soil	MNATNESSENENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316601_1018233291	3300033419	Soil	KPEMPAHVMVFDPEKPPFETLHLCIYLRELEDEKEHK
Ga0316620_101063763	3300033480	Soil	ELPAHVMVYDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316620_109996052	3300033480	Soil	VEKKEEEKEKPELPAHVMVFDPEKPPFETLHLCIYLRELEDEKEHK
Ga0316600_101367732	3300033481	Soil	KPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316600_104915161	3300033481	Soil	MEKKEEENEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEEEHK
Ga0316600_113019372	3300033481	Soil	MTATSESIKKENKKYEVPTHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316627_1000034642	3300033482	Soil	MSPLEVLLYMTATSGSNEKENKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316627_1005044632	3300033482	Soil	EKKNKKFEVPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316627_1011921561	3300033482	Soil	MTATSGSSEKENKKSEVLAHVMVFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316629_100333351	3300033483	Soil	VIAMGETMENKKEEAKEKLEIPAHVQTFDPENPPFATQRLCIYLRELEEEKEHK
Ga0316629_101750842	3300033483	Soil	VDRLVEIFSMSVTVGEKEEEKEKPEMPAHVKTFDPENPPFETQHLCIYLRELEEEKEHK
Ga0316626_100837124	3300033485	Soil	INKKKKKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK
Ga0316626_101880861	3300033485	Soil	LEVVLYMTATSESNEKKNKKFEVPAHVMVFDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316626_121451271	3300033485	Soil	VDVLVGMFSMSFDVGKKEEERDNPQMPAHVKTFDPENPPFEIQHMCIFLSELEDGKAKEE
Ga0316630_102666131	3300033487	Soil	FNDVILHMTDTTEINKKKRKKLEVPAHVMVFDPENPPFETLHLCIYLRDLEEEKEHK
Ga0316621_103146021	3300033488	Soil	MTRIEGKKDVEEKKPELPEHVKTFDPENPPFETQRLCIYLRELEEEKEHK
Ga0316628_1007713172	3300033513	Soil	MEKKDEKKEKPELPAHVMVYDPEKPPFETLHLCIYLRELEEEKEHK
Ga0316628_1019326201	3300033513	Soil	MSVTVGEKEEEKEKPEMPAHVKTFDPENPPFETLHLCIYLRELEEEKEHK
Ga0316628_1035154062	3300033513	Soil	MEKKEEEKEKPEIPAHVAIFDPENPPFVTQRLCIYLRELEEEKEHK
Ga0316617_1014329832	3300033557	Soil	MGETMENKKEEAKEKLEIPAHVQTFDPENPPFVTQRLCIYLRELEEEKEHK
Ga0316617_1017936511	3300033557	Soil	MQTKEEEKPKMPAHITTFDPENPPFVTQRLCIYLRELEEE
Ga0316617_1025651552	3300033557	Soil	MTATSESNEEKNKKSEVPAHVMVFDPENPPFETLHLCIYLRELEEEKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters