Metagenome / Metatranscriptome Family F064908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064908
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	76 residues
Representative Sequence	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTYSLAMAKKWIDDNAG
Number of Associated Samples	76
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.90 %
% of genes near scaffold ends (potentially truncated)	24.22 %
% of genes from short scaffolds (< 2000 bps)	69.53 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.031 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (31.250 % of family members)
Environment Ontology (ENVO)	Unclassified (35.156 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.594 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.45% β-sheet: 31.07% Coil/Unstructured: 50.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
d.50.1.1: Double-stranded RNA-binding domain (dsRBD)	d1whna1	1whn	0.65011
e.3.1.0: automated matches	d6huha1	6huh	0.63607
e.3.1.1: beta-Lactamase/D-ala carboxypeptidase	d4f7ya_	4f7y	0.63324
e.3.1.0: automated matches	d4ovda2	4ovd	0.63171
d.179.1.1: Substrate-binding domain of HMG-CoA reductase	d4i6ya1	4i6y	0.63119

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF01381	HTH_3	7.81
PF04392	ABC_sub_bind	4.69
PF07589	PEP-CTERM	2.34
PF13560	HTH_31	2.34
PF07992	Pyr_redox_2	1.56
PF00589	Phage_integrase	1.56
PF02687	FtsX	1.56
PF02899	Phage_int_SAM_1	1.56
PF01068	DNA_ligase_A_M	1.56
PF02958	EcKL	1.56
PF09992	NAGPA	0.78
PF00557	Peptidase_M24	0.78
PF02371	Transposase_20	0.78
PF02954	HTH_8	0.78
PF00528	BPD_transp_1	0.78
PF01258	zf-dskA_traR	0.78
PF01757	Acyl_transf_3	0.78
PF05192	MutS_III	0.78
PF13533	Biotin_lipoyl_2	0.78
PF09723	Zn-ribbon_8	0.78
PF12801	Fer4_5	0.78
PF01255	Prenyltransf	0.78
PF12704	MacB_PCD	0.78
PF12697	Abhydrolase_6	0.78
PF13411	MerR_1	0.78
PF12844	HTH_19	0.78
PF00483	NTP_transferase	0.78
PF13365	Trypsin_2	0.78
PF03807	F420_oxidored	0.78
PF00331	Glyco_hydro_10	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.69
COG0510	Thiamine kinase or a related kinase	Coenzyme transport and metabolism [H]	1.56
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.56
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.56
COG2334	Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist	Signal transduction mechanisms [T]	1.56
COG3173	Predicted kinase, aminoglycoside phosphotransferase (APT) family	General function prediction only [R]	1.56
COG3178	Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family	General function prediction only [R]	1.56
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	1.56
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	1.56
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.78
COG0249	DNA mismatch repair ATPase MutS	Replication, recombination and repair [L]	0.78
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3693	Endo-1,4-beta-xylanase, GH35 family	Carbohydrate transport and metabolism [G]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
All Organisms	root	All Organisms	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
cellular organisms	root	All Organisms → cellular organisms	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	11.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.56 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	11.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.56 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.78 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.78 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	11.72 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	9.38 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.78 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.78 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.78 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.38 %
Pseudolysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter	0.78 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.78 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.38 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.78 %
Pseudolysobacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter → Pseudolysobacter antarcticus	0.78 %
Fulvivirgaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae	0.78 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.03 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	9.38 %
Mycolicibacterium iranicum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium iranicum	0.78 %
Chryseolinea	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea	0.78 %
Pseudolysobacter antarcticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter → Pseudolysobacter antarcticus	0.78 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100401971	Not Available	1248	Open in IMG/M
3300002245\|JGIcombinedJ26739_101295659	Not Available	619	Open in IMG/M
3300004463\|Ga0063356_100050684	All Organisms → cellular organisms → Bacteria	4182	Open in IMG/M
3300005434\|Ga0070709_10210594	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300005440\|Ga0070705_100298396	Not Available	1153	Open in IMG/M
3300005445\|Ga0070708_100011703	All Organisms → cellular organisms → Bacteria	7141	Open in IMG/M
3300005445\|Ga0070708_100030842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudolysobacter → Pseudolysobacter antarcticus	4637	Open in IMG/M
3300005445\|Ga0070708_100416751	Not Available	1267	Open in IMG/M
3300005445\|Ga0070708_101694516	Not Available	588	Open in IMG/M
3300005467\|Ga0070706_100093779	All Organisms → cellular organisms → Bacteria	2785	Open in IMG/M
3300005467\|Ga0070706_100457121	Not Available	1188	Open in IMG/M
3300005467\|Ga0070706_101044855	Not Available	753	Open in IMG/M
3300005467\|Ga0070706_101139560	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005467\|Ga0070706_101220939	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005468\|Ga0070707_100419845	Not Available	1298	Open in IMG/M
3300005468\|Ga0070707_100701716	Not Available	975	Open in IMG/M
3300005468\|Ga0070707_101254302	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	707	Open in IMG/M
3300005471\|Ga0070698_100138742	Not Available	2384	Open in IMG/M
3300005471\|Ga0070698_100816402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	877	Open in IMG/M
3300005471\|Ga0070698_101562550	Not Available	611	Open in IMG/M
3300005536\|Ga0070697_100077546	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2734	Open in IMG/M
3300005536\|Ga0070697_100340316	Not Available	1294	Open in IMG/M
3300006058\|Ga0075432_10196664	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300006176\|Ga0070765_100910522	Not Available	831	Open in IMG/M
3300007255\|Ga0099791_10023424	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2669	Open in IMG/M
3300007255\|Ga0099791_10028304	Not Available	2445	Open in IMG/M
3300007255\|Ga0099791_10247783	Not Available	844	Open in IMG/M
3300007255\|Ga0099791_10523020	Not Available	577	Open in IMG/M
3300007258\|Ga0099793_10470223	Not Available	623	Open in IMG/M
3300007265\|Ga0099794_10010005	All Organisms → cellular organisms → Bacteria → Proteobacteria	4014	Open in IMG/M
3300007265\|Ga0099794_10142376	Not Available	1215	Open in IMG/M
3300009038\|Ga0099829_10093978	Not Available	2321	Open in IMG/M
3300009038\|Ga0099829_10215714	Not Available	1557	Open in IMG/M
3300009088\|Ga0099830_11370148	Not Available	588	Open in IMG/M
3300009088\|Ga0099830_11501169	Not Available	561	Open in IMG/M
3300009147\|Ga0114129_10026546	All Organisms → cellular organisms → Bacteria	8202	Open in IMG/M
3300009147\|Ga0114129_10040459	All Organisms → cellular organisms → Bacteria	6571	Open in IMG/M
3300010400\|Ga0134122_10819839	Not Available	890	Open in IMG/M
3300010400\|Ga0134122_11533344	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea	687	Open in IMG/M
3300010401\|Ga0134121_12611209	Not Available	549	Open in IMG/M
3300011270\|Ga0137391_10576528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	946	Open in IMG/M
3300012174\|Ga0137338_1002951	All Organisms → cellular organisms → Bacteria	2886	Open in IMG/M
3300012202\|Ga0137363_10745858	Not Available	829	Open in IMG/M
3300012205\|Ga0137362_10568282	Not Available	979	Open in IMG/M
3300012205\|Ga0137362_10653576	Not Available	905	Open in IMG/M
3300012362\|Ga0137361_10444651	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1191	Open in IMG/M
3300012362\|Ga0137361_10806628	Not Available	854	Open in IMG/M
3300012362\|Ga0137361_11027436	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300012363\|Ga0137390_10149435	Not Available	2320	Open in IMG/M
3300012917\|Ga0137395_10336286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1074	Open in IMG/M
3300012923\|Ga0137359_10464182	Not Available	1119	Open in IMG/M
3300012927\|Ga0137416_10806424	Not Available	830	Open in IMG/M
3300012929\|Ga0137404_10519655	Not Available	1064	Open in IMG/M
3300012929\|Ga0137404_11341156	Not Available	660	Open in IMG/M
3300012931\|Ga0153915_10363501	Not Available	1631	Open in IMG/M
3300012986\|Ga0164304_11876426	Not Available	502	Open in IMG/M
3300014884\|Ga0180104_1033331	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1331	Open in IMG/M
3300014885\|Ga0180063_1014223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium iranicum	2137	Open in IMG/M
3300015259\|Ga0180085_1190930	Not Available	613	Open in IMG/M
3300018429\|Ga0190272_11676781	Not Available	656	Open in IMG/M
3300020060\|Ga0193717_1153443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	674	Open in IMG/M
3300020579\|Ga0210407_10182854	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300021073\|Ga0210378_10013470	All Organisms → cellular organisms → Bacteria	3384	Open in IMG/M
3300021073\|Ga0210378_10285320	Not Available	622	Open in IMG/M
3300021088\|Ga0210404_10038747	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300021088\|Ga0210404_10149063	Not Available	1224	Open in IMG/M
3300021088\|Ga0210404_10289431	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	899	Open in IMG/M
3300021170\|Ga0210400_11185095	Not Available	616	Open in IMG/M
3300021178\|Ga0210408_10022240	All Organisms → cellular organisms → Bacteria	5054	Open in IMG/M
3300021432\|Ga0210384_10025067	Not Available	5649	Open in IMG/M
3300021432\|Ga0210384_10327910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1378	Open in IMG/M
3300021432\|Ga0210384_10383733	Not Available	1265	Open in IMG/M
3300021559\|Ga0210409_10023443	All Organisms → cellular organisms → Bacteria	5973	Open in IMG/M
3300022525\|Ga0242656_1066813	Not Available	652	Open in IMG/M
3300025885\|Ga0207653_10029094	Not Available	1779	Open in IMG/M
3300025898\|Ga0207692_10537556	Not Available	745	Open in IMG/M
3300025906\|Ga0207699_10389657	Not Available	990	Open in IMG/M
3300025910\|Ga0207684_10004468	All Organisms → cellular organisms → Bacteria	13165	Open in IMG/M
3300025910\|Ga0207684_10005027	All Organisms → cellular organisms → Bacteria	12331	Open in IMG/M
3300025910\|Ga0207684_10013738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6994	Open in IMG/M
3300025910\|Ga0207684_10066999	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3050	Open in IMG/M
3300025910\|Ga0207684_10116809	Not Available	2286	Open in IMG/M
3300025910\|Ga0207684_10126377	Not Available	2194	Open in IMG/M
3300025910\|Ga0207684_10950976	Not Available	720	Open in IMG/M
3300025910\|Ga0207684_11008837	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300025910\|Ga0207684_11013597	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	694	Open in IMG/M
3300025910\|Ga0207684_11016610	Not Available	693	Open in IMG/M
3300025917\|Ga0207660_10351955	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300025922\|Ga0207646_10108026	Not Available	2496	Open in IMG/M
3300025922\|Ga0207646_10130775	Not Available	2259	Open in IMG/M
3300025922\|Ga0207646_10256607	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300025922\|Ga0207646_10454613	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300025922\|Ga0207646_11796683	Not Available	524	Open in IMG/M
3300026354\|Ga0257180_1020351	Not Available	858	Open in IMG/M
3300026376\|Ga0257167_1024883	Not Available	874	Open in IMG/M
3300026376\|Ga0257167_1065125	Not Available	568	Open in IMG/M
3300026498\|Ga0257156_1105325	Not Available	587	Open in IMG/M
3300026514\|Ga0257168_1000124	All Organisms → cellular organisms → Bacteria	5538	Open in IMG/M
3300026535\|Ga0256867_10036491	All Organisms → cellular organisms → Bacteria → Proteobacteria	2037	Open in IMG/M
3300026551\|Ga0209648_10074892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2839	Open in IMG/M
3300026551\|Ga0209648_10419592	Not Available	859	Open in IMG/M
3300026557\|Ga0179587_11135313	Not Available	514	Open in IMG/M
3300027651\|Ga0209217_1043114	Not Available	1380	Open in IMG/M
3300027655\|Ga0209388_1013231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2250	Open in IMG/M
3300027727\|Ga0209328_10181090	Not Available	638	Open in IMG/M
3300027731\|Ga0209592_1155230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	819	Open in IMG/M
3300027765\|Ga0209073_10108929	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300027862\|Ga0209701_10289832	Not Available	944	Open in IMG/M
3300027910\|Ga0209583_10338662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	696	Open in IMG/M
3300028047\|Ga0209526_10372674	Not Available	952	Open in IMG/M
3300028047\|Ga0209526_10516926	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300028536\|Ga0137415_10375819	Not Available	1225	Open in IMG/M
3300028792\|Ga0307504_10051138	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1180	Open in IMG/M
3300030006\|Ga0299907_10070272	All Organisms → cellular organisms → Bacteria	2829	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10191825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300031229\|Ga0299913_10080446	All Organisms → cellular organisms → Bacteria	3160	Open in IMG/M
3300031720\|Ga0307469_10427675	Not Available	1139	Open in IMG/M
3300031740\|Ga0307468_100073478	All Organisms → cellular organisms → Bacteria	1911	Open in IMG/M
3300031820\|Ga0307473_10176936	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300031962\|Ga0307479_11687109	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300032180\|Ga0307471_102006578	Not Available	726	Open in IMG/M
3300032180\|Ga0307471_103453350	Not Available	559	Open in IMG/M
3300032180\|Ga0307471_104070248	Not Available	516	Open in IMG/M
3300033417\|Ga0214471_10128380	Not Available	2088	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.88%
Host-Associated	Host-Associated	3.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.84%
Aquatic	Environmental → Aquatic	7.03%
Plants	Host-Associated → Plants	3.12%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.84%
Sediment	Environmental → Aquatic → Sediment	3.91%
Freshwater	Environmental → Aquatic → Freshwater	3.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.56%
Loam	Environmental → Terrestrial → Soil → Loam	37.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.34%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	32.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.47%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.56%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	31.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.69%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.12%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.34%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.78%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012174	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT366_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027731	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1004019712	3300002245	Forest Soil	MTRGAGKDMSEPIDIEYRGHFIVVQSYESDSKRWRPKALVSIYHAGALQQTIVSAPDDVWFDSEEDAVTHSLAAAKKWIDDHEER*
JGIcombinedJ26739_1012956591	3300002245	Forest Soil	MNNSPDIEYRGHFIEVQAYQSDGRRWRPKALVSIYQGGTVHQSFVSPPVDVLFDSEDDAVTYSLLMAKK
Ga0063356_1000506841	3300004463	Arabidopsis Thaliana Rhizosphere	VSEPPEIEYRGHFIAVRSESDGQRWRPKAVVSIYQRGTLRKQTVKAPDRVLLDSEEAAETYALAIAKKWIDEQ*
Ga0070709_102105942	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSTYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH*
Ga0070705_1002983964	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSKDAADTFSLAMAKKWIDDNAGSPMP*
Ga0070708_1000117036	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSQRWRPKALVSIYHSGTMHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGNPMP*
Ga0070708_1000308425	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0070708_1004167511	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSEADIEYRGHFIDVQSYESDGKRWLPKAVVSIYHSGAMHTKIVPAPIEVLFDSEAAADTYSLAMAKKWIDDNS*
Ga0070708_1016945161	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAPDIEYRGHFIEVQSYESDAKRWRPKAVVSIYHGGALHQKLVSAPIEVLFDSEVEADTYSLTMAKKWIDDNARNPT*
Ga0070708_1020210971	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VQSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0070706_1000937791	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHFIIVRSYGSEGTQWRPKALVSIYHSGTVHRRVLVAPVDVRFDSEDAADTCALALAKKWIDDHAGHPMP*
Ga0070706_1004571213	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHYIVVKSYESEGTRWRPKALVSIYHSGTVHRKMIVAPADVRLDSEDAADTYSLSLAKKWIDDHAGSQMP*
Ga0070706_1010448552	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSEADIEYRGHFIDVQSHESDGKQWRPKAVVSIYHGGVLHQQTVAAPIEVLFDSEVAADTYSLAIAKKWIDDNREE*
Ga0070706_1011395602	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKEPDIEYRGHYIVVQSSESDSERWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDD
Ga0070706_1012209391	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MVIPTAQGGSYMNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSIYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH*
Ga0070707_1004198451	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEADIEYRGHFIDVQSHESDGKQWRPKAVVSIYHSGALHTKIVSAPIEVLFDSEVAADTYSLAMAKKWIDDNS*
Ga0070707_1005713751	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHFIIVRSYGSEGTQWRPKALVSIYHSGTVHRRMLVAPVDVRFDSEDAADT
Ga0070707_1007017163	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAPDIEYRGHFIEVQSYESDGKRWRPKALVSIYQAGTLHQKFVTAPVEVLCDSEEAADTYSLAMAKKWIDD
Ga0070707_1012543021	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEALDIEYRGHFIEVQSYESDGKRWRPKAVESLYHGGPLNQKVVSAPIEVLFDSKAEADTYSLAVAKKWIDDNS*
Ga0070698_1001387421	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIDHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAG
Ga0070698_1008164021	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	NACCRAVELVPRWREAMSEAPNIEYRDHFIEVQSYESDGGRWRPKALVSIYHAGTLHQKCVTAPVDVLCDSEEAADTYSLAMAKKWIDDKR*
Ga0070698_1014987352	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHYIVVKSYESEGTRWRPKALVSIYHSGTVHRKMIVAPADVRLDSEDAAD
Ga0070698_1015625502	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVLQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP*
Ga0070697_1000775461	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	EPDIEYRGHYIVVKSYESEGTRWRPKALVSIYHSGTVHRKMIVAPADVRLDSEDAADTYSLSLAKKWIDDHAGSQMP*
Ga0070697_1003403162	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWID
Ga0075432_101966642	3300006058	Populus Rhizosphere	MNTSPDIEYRGHFIEVQAYQSDDRRWRPKALLSIYQGGTVHRHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH*
Ga0070765_1009105223	3300006176	Soil	MNEPDIEYRGHFIIVLSYYESDGRQWRPKALVSIYHSGTVHRRIVVAPVEVRFDSEDAADTHSLAMAKKWIDDHAPMA*
Ga0099791_100234244	3300007255	Vadose Zone Soil	MNEQPDIEYRGHFIVVQSYESEGQRWRPKALVSIYHSGTMHRKMVVAPVDVRFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0099791_100283045	3300007255	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSMYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDHS*
Ga0099791_102477831	3300007255	Vadose Zone Soil	MSQTPDIEYRGHFIAVQAYQSDGQRWRPKALVSIYQGGTVHQTSVSAPVEVSFDSEDDAVTYSLLMAKKWIDDH*
Ga0099791_105230202	3300007255	Vadose Zone Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP*
Ga0099793_104702231	3300007258	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSMYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWID
Ga0099794_100100052	3300007265	Vadose Zone Soil	MSQTPDIEYRGHFIAVQAYQSDGQRWRPKALVSIYQGGTVRQTSVSAPVEVSFDSEDDAVTYSLLMAKKWIDDH*
Ga0099794_101423762	3300007265	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSIYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDHS*
Ga0099829_100939782	3300009038	Vadose Zone Soil	MSEADIEYRGHFIDVQSSESDGKRWRPKAVVSIYHSGALHTKIVSAPIEVLFDSEVAADTYSLAMAKKWIDDNS*
Ga0099829_102157143	3300009038	Vadose Zone Soil	MATMNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGNPMP*
Ga0099830_113701482	3300009088	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSIYQGGALPTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDQLEGGRLEGKTEK
Ga0099830_115011692	3300009088	Vadose Zone Soil	MATMNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDGADTFSLAMAKKWIDDNAGNPMP*
Ga0114129_1002654615	3300009147	Populus Rhizosphere	MSEADIEYRGHFIDVQSFESEDNHWRPKAVVSIYRSGTLHREIMSAPSSELFDSEVGADTYALEMAKKWIDDNS*
Ga0114129_100404598	3300009147	Populus Rhizosphere	MSEADVEYRGHFIDVQSHESDGKRWRPKAVVSIYHSGALHQKIVSAPIEVLFDSETEADTYSLAMAKKFIDDKS*
Ga0134122_108198391	3300010400	Terrestrial Soil	VPSATREEDNMSEADIEYRGHIIDVQSFESEGKWWRPKAVVSIYHGGTVHTKMVAAPIDVMFDSEVAADTYSLEMAKKWIDDKS*
Ga0134122_115333441	3300010400	Terrestrial Soil	VSEPPEIEYRGHFIAVRSESDGHRWRPKAVVSIYQRGTLRKQTVKAPDRVLLDSEEAAETYALAIAKKWIDEQ*
Ga0134121_126112092	3300010401	Terrestrial Soil	MNEPVDIEYRGHFIVVQSYESDDKRWRPKALVSIYRAGALQQTIVSAPVDVWFDSEEDAITHSLAAAKQWIDDHER*
Ga0137391_105765282	3300011270	Vadose Zone Soil	MSEANIEYRGRFIDVQSFESGGKRWRPKAVVSMYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDQL
Ga0137338_10029516	3300012174	Soil	MSESDIEYRGHFINVQSSESDGNRWRPNAVVSTYHRGALHTQIVSAPIEVLFDSEVAADTHSLAMAKKWIDDN
Ga0137363_107458582	3300012202	Vadose Zone Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPNALVSIYHSGTVHRRIVAAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0137362_105682822	3300012205	Vadose Zone Soil	MNEPDIEYRGHYIIVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTYSLAMAKKWIDDNAGSPMP*
Ga0137362_106535762	3300012205	Vadose Zone Soil	MNEPDIEYRGHYIVVQSFESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0137361_104446514	3300012362	Vadose Zone Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTYSLAMAKKWIDDNAG
Ga0137361_108066282	3300012362	Vadose Zone Soil	MNEPDVEYRGHYIVVHSYESEGTRWRPKALVSIYHSGTVHRKMIVAPVDVRFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0137361_110274361	3300012362	Vadose Zone Soil	MSQTPDIEYRGHFIAVQAYQSDGQRWRPKALVSIYQGGTVRQTSVSAPVEVSFDSEDDAVTYSLL
Ga0137390_101494352	3300012363	Vadose Zone Soil	MSEADIEYRGHFIDVQSFESDGQRWRPKAVVSIYEGGALQTRLVAAPVEVLLDSEGAADTYALAMAKKWIDDNN*
Ga0137395_103362862	3300012917	Vadose Zone Soil	MATMNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTYSLAMAKKWIDDNAGSPMP*
Ga0137395_103545631	3300012917	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSIYQGGALQTRLVSAPVEVLLDSEVAADTYS
Ga0137359_104641822	3300012923	Vadose Zone Soil	MNEPDIEYRGHYIIVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP*
Ga0137416_108064242	3300012927	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSMYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDQLEGG
Ga0137404_105196551	3300012929	Vadose Zone Soil	MSEADVEYRGHFIDVQSYESDGKRWRPKAVVSIYHSGALHQKIVSAPIEVLFDSETKADTYSLAMAKKWIDDKG*
Ga0137404_113411562	3300012929	Vadose Zone Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVRFDSEDAADTYSLALAKKWIDDNAGSPMP*
Ga0153915_103635012	3300012931	Freshwater Wetlands	MSEADIEYRGHFIDVQSYESDGKRWRPKAVVSIYRGGALHHKIVSAPIEVLFESETAADTYSLAMAKKWIDDNS*
Ga0164304_118764262	3300012986	Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP*
Ga0180104_10333311	3300014884	Soil	MSESDIEYRGHFINVQSSESDGNRWRPNAVVSTYHRGALHTQIVSAPIEVLFDSEVAADTHSLAMAKKWIDDNS*
Ga0180063_10142235	3300014885	Soil	DIEYRGHFIDVQSYESEGRRWRPKAILSIYRSGTLHQQILSAPGEVLLESEEAAETYSLAMAKKWIDEQD*
Ga0180085_11909302	3300015259	Soil	ADIEYRSHFIDVQSHESAGKQWRPKAVVSIYHGGVLHQKTVAAPIEVLFDSETAADTYSLGMAKKWIDDHS*
Ga0190272_116767811	3300018429	Soil	MSEADIEYRGHFIDVQSHESDGKQWRPKAVVSSYQGGVLHQKTVAAPIEVLFDSEVAADTYSLAMAKKWIDDNS
Ga0193717_11534431	3300020060	Soil	MSEADIEYRGHFIDVQASESADKRWRPNAVVSLFHGGALHQNTVSAPIGVLFDSETDADTYSLAMAKKWIDHQLVE
Ga0210407_101828541	3300020579	Soil	MSEPIDIEYRGHFIVVQSYESDSKRWRPKALVSIYHAAALQQTVVSAPVDVWFDSEEDAVTYSLAAAKKWIDDQEER
Ga0210378_100134705	3300021073	Groundwater Sediment	MSEAPDIEYRGHFIDVHSYESEGKRWRPKAVVSIYRSGTLHQQILSAPGEVLLESEEAAETYSLAMAKKWIDDH
Ga0210378_102853202	3300021073	Groundwater Sediment	MSEADIEYRGHFIDVQSSESDGTRWRPKAVVSIYHNGALHTKIVSAPIEVLFDSEVAADTYSLAMAKKWIDDNS
Ga0210404_100387471	3300021088	Soil	MNEQPDIEYRGHFIVVQSYESEGTRWRPKALVSIYHSGTVHRKMVVAPVDVRFDSEDAADTYSLALAKKWIDDNDGSPMP
Ga0210404_101490632	3300021088	Soil	MSETDIEYRGHFIDVQSFESDGKRWRPKAVVSIYQGGAVQTRLVSAPVEVLLESEVAADTYSLAMAKKWIDDHS
Ga0210404_102894312	3300021088	Soil	MSEAPDIEYRDHFIEVQSYESDGGRWRPKALVSIYHAGTLHQKCVTAPVDVLCDSEEAADTYSLAMAKKWIDDKR
Ga0210400_111850951	3300021170	Soil	SVSTQSSSCGLTTTPGGEDMNEPVDIEYRGHFIAVQTYESDSKQWRPKALVSIYHAGALQQTIVSAPVDVRFDSEEEAVTYSLAAAKKWIDDHEP
Ga0210408_100222402	3300021178	Soil	MNEPVDIEYRGHFIAVQTYESDSKQWRPKALVSIYHAGALQQTIVSAPVDVRFDSEEEAVTYSLAAAKKWIDDHEP
Ga0210384_1002506711	3300021432	Soil	MNEQPDIEYRGHFIVVQSYESEGTRWRPKALVSIYHSGTVHRKMVVAPVDVRFDSEDAADTCSLALAKKWIDDNNGSPMP
Ga0210384_103279103	3300021432	Soil	MNEQPDIEYRGHYIVVQSSESEGTRWRPKALVSIYHSGTVHRKMVVAPVDVRFDSEDAADTYSLALAKKWIDDNDGSPMP
Ga0210384_103837332	3300021432	Soil	MNEPDIEYRGHFIIVLSYYESDGRQWRPKALVSIYHSGTVHRRIVVAPVEVRFDSEDAADTHSLAMAKKWIDDHAPMA
Ga0210409_100234439	3300021559	Soil	EPIDIEYRGHFIVVQSYESDSKRWRPKALVSIYHAAALQQTVVSAPVDVWFDSEEDAVTYSLAAAKKWIDDQEER
Ga0242656_10668131	3300022525	Soil	DMNEPVDIEYRGHFIAVQTYESDSKQWRPKALVSIYHAGALQQTIVSAPVDVRFDSEEEAVTYSLAAAKKWIDDHEP
Ga0207653_100290942	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0207692_105375562	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSTYQGGTVHQHSVSAAVEVSFESEDDAVTYSLL
Ga0207699_103896572	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSTYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDD
Ga0207684_1000446815	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0207684_1000502716	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSQRWRPKALVSIYHSGTMHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGNPMP
Ga0207684_100137387	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAPDIEYRGHFIEVQSYEADGGRWRPKALVSIYHAGTLHQKCVTAPVDVLCDSEEAADTYSLAMAKKWIDDKR
Ga0207684_100669994	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSEADIEYRGHFIDVQSYESDGKRWLPKAVVSIYHSGAMHTKIVPAPIEVLFDSEAAADTYSLAMAKKWIDDNS
Ga0207684_101168091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVRSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0207684_101263771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSKDAADTFSLAMAKKWIDDNAGSPMP
Ga0207684_109509761	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAK
Ga0207684_110088372	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKEPDIEYRGHYIVVQSSESDSERWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLA
Ga0207684_110135972	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVIPTTQGGSYMNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSIYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH
Ga0207684_110166102	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHYIVVKSYESEGTRWRPKALVSIYHSGTVHRKMIVAPADVRLDSEDAADTYSLSLAKKWIDDHAGSQMP
Ga0207660_103519552	3300025917	Corn Rhizosphere	VSEPPEIEYRGHFIAVRSESDGQRWRPKAVVSIYQRGTLRKQTVKAPDRVLLDSEEAAETYALAIAKKWIDEQ
Ga0207646_101080267	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	DIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0207646_101307754	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDEPDIEYRGHFIIVRSYGSEGTQWRPKALVSIYHSGTVHRRVLVAPVDVRFDSEDAADTCALALAKKWIDD
Ga0207646_102566072	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSEALDIEYRGHFIEVQSYESDGKRWRPKAVESLYHGGPLNQKVVSAPIEVLFDSKAEADTYSLAVAKKWIDDNS
Ga0207646_104546131	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVIPTAQGGSYMNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSIYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH
Ga0207646_117966831	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAPDIEYRGHFIEVQSYESDGKRWRPKALVSIYQAGTLHQKFVTAPVEVLCDSEEAADTYSLAMAKKWIDDKS
Ga0257180_10203513	3300026354	Soil	MSEADIEYRGHFIDVQSSESDGKRWRPKAVVSIYHSGALHTKIVSAPIEVLFDSEVAADTYSLAMAKKWIDDNS
Ga0257167_10248833	3300026376	Soil	EYRGHFIVVQSYESEGKRWRPKALVSTYHSGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP
Ga0257167_10651251	3300026376	Soil	HFIDVQSFESGGKRWRPKAVASIYQGGAVQTRLVSAPVEVLFESEIAADTYSLAMAKKWIDDHS
Ga0257156_11053252	3300026498	Soil	MNEPDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP
Ga0257168_10001241	3300026514	Soil	MSQTPDIEYRGHFIAVQAYQSDGQRWRPKALVSIYQGGTVRQTSVSAPVEVSFDSEDDAVTYSLLMAKKWIDDH
Ga0256867_100364913	3300026535	Soil	MGEAPDIEYRGHFIEVRSYESEGKRWRPKAVVSIYRRGTLQRQILSAPGEVLVESEEAAETYSLAMAKKWIDDQ
Ga0209648_100748921	3300026551	Grasslands Soil	VSETPDIEYRDHFIEVQAYQSDGQRWRPKALLSIYQGGTVIQTSVSAPGEVSFDSEDDAVTYSLLMAKKWIDDH
Ga0209648_104195922	3300026551	Grasslands Soil	MNESDIEYRGHYIVVQSSESDSKRWRPKALVSIYHSGTVHRKIVVAPIEVLFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0179587_111353131	3300026557	Vadose Zone Soil	MSEADVEYRGHFIDVQSYESDGKRWRPKAVVSIYHSGALHQKIVSAPIEVLFDSETKADTYSLAMAKKWIDDKG
Ga0209217_10431145	3300027651	Forest Soil	MNEQPDIEYRGHFIVVRSFESDGKRWRPKALVSIYHSGTVHRKMVVAPVDVRFDSEDAADTYSLALAKKWIDDNAGSPMP
Ga0209388_10132316	3300027655	Vadose Zone Soil	MNEQPDIEYRGHFIVVQSYESEGQRWRPKALVSIYHSGTMHRKMVVAPVDVRFDSEDAADTFSLAMAKKWIDDNAGSPMP
Ga0209328_101810902	3300027727	Forest Soil	MSEPIDIEYRGHFIVVQSYESDSKRWRPKALVSIYHAGALQQTIVSAPDDVWFDSEEDAVTHSLAAAKKWIDDHEER
Ga0209592_11552302	3300027731	Freshwater Sediment	MSEADIEYRGHFIDVQSHESDGKQWRPKAVVSIYHGGALHQKTVAAPIEVLFDSETAADTYSLGMAKKWIDDNS
Ga0209073_101089292	3300027765	Agricultural Soil	MNTSPDIEYRGHFIEVQAYQSDDRRWRPKALLSIYQGGTVHRHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH
Ga0209701_102898322	3300027862	Vadose Zone Soil	MSQTPDIEYRGHFIAVQAYQSDGQRWRPKALVSIYQGGTVHQTSVSAPVEVSFDSEDDAVTYSLLMAKKWIDDH
Ga0209583_103386621	3300027910	Watersheds	MSEADIEYRGHFIDVQSYESDGKRWRPKAVVSTYHGGALHQQIVSAPIEVMFDSETEADTYSLAVAKKWIDDNSER
Ga0209526_103726743	3300028047	Forest Soil	MNEQPDIEYRGHFIVVRSFESDGKRWRPKALVSIYHSGTVHRKMIVAPADVRFDSEDAADTYSLALAKKWIDDNAGSPMP
Ga0209526_105169262	3300028047	Forest Soil	MNNSPDIEYRGHFIEVQAYQSDGRRWRPKALVSIYQGGTVHQSFVSPPVDVLFDSEDDAVTYSLLMAKKWIDDH
Ga0137415_103758191	3300028536	Vadose Zone Soil	MSEANIEYRGHFIDVQSFESGGKRWRPKAVVSMYQGGALQTRLVSAPVEVLLDSEVAADTYSLAMAKKWIDDHS
Ga0307504_100511382	3300028792	Soil	VSGAPDIEYRGHFIEVQSYESDGRRWRPKALVTIYQAGTLHQKIVTAPGEVLCDSEEAAETYSLALAKQWIDAKG
Ga0299907_100702721	3300030006	Soil	MGEAPDIEYRGHFIEVRSYESESKRWRPKAVVSIYRGGTLHRQTLSAPGEVLVESEEAAETYSLAMAKKWIDDQ
(restricted) Ga0255310_101918252	3300031197	Sandy Soil	MSEADIEYRGHFIDVQSHESDGKQWRAKAVVSIYHGGVLHQKTVAAPIEVLFDSETAADTYSLGMAKKWIDDNS
Ga0299913_100804462	3300031229	Soil	MGEAPDIEYRGHFIEVRSYESEGKRWRPKAVVSIYRGGTLHRQILSAPGEVLVESEEAAETYSLAMAKKWIDDQ
Ga0307469_104276751	3300031720	Hardwood Forest Soil	EPDIEYRGHYIVVRSSESDSKRWRPKALVSIYHRGTVHRKIVVAPIEVRFDSEDAADTYSLAMAKKWIDDNAGSPMP
Ga0307468_1000734781	3300031740	Hardwood Forest Soil	MSEADIEYRGHIIDVQSFESEGKWWRPKAVVSIYHGGTVHTKMVAAPIDVMFDSEVAADTYSLEMAKKWIDDKS
Ga0307473_101769361	3300031820	Hardwood Forest Soil	MVIPTAQGGSYMNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSTYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH
Ga0307479_116871092	3300031962	Hardwood Forest Soil	VIPMAQGGSYMNTSPDIEYRGHFIEVQAYQSDDQRWRPKALLSIYQGGTVHQHSVSAAVEVSFESEDDAVTYSLLMAKKWIDDH
Ga0307471_1020065782	3300032180	Hardwood Forest Soil	MSETDVEYRGHFIDVQSFESDGARWRPKAIVSIYLGGTVHTRMVAAPIDVLFDSEVAADTHALAMAKKWIDDNSSGTKTGGAC
Ga0307471_1034533501	3300032180	Hardwood Forest Soil	MNEPDIEYRGHYIVVRSSESDSQRWRPKALVSIYHRGTVHRKIVVAPIEVLFDSEDAADTYSLAMAKKWIDDN
Ga0307471_1040702482	3300032180	Hardwood Forest Soil	IEYRGHFIDVQSCESEGRRWRPKAILSIYRSGTLHQQILSAAGEVLFESEEAETYSLAMAKKWIDEQG
Ga0214471_101283802	3300033417	Soil	MREAPDIEYRGYFIEVQSYESEGKRWRPKAIVSIYRSGTLHQQILSAPGELLLESEEAAETYSLAMAKKWIDDH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters