NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F065092

Metagenome / Metatranscriptome Family F065092

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065092
Family Type Metagenome / Metatranscriptome
Number of Sequences 128
Average Sequence Length 40 residues
Representative Sequence MRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS
Number of Associated Samples 112
Number of Associated Scaffolds 128

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 59.38 %
% of genes from short scaffolds (< 2000 bps) 76.56 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(12.500 % of family members)
Environment Ontology (ENVO) Unclassified
(25.781 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.469 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 20.00%    β-sheet: 0.00%    Coil/Unstructured: 80.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 128 Family Scaffolds
PF00478IMPDH 24.22
PF02472ExbD 17.19
PF01618MotA_ExbB 6.25
PF01209Ubie_methyltran 4.69
PF00109ketoacyl-synt 1.56
PF13183Fer4_8 0.78
PF14602Hexapep_2 0.78
PF04390LptE 0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 128 Family Scaffolds
COG0848Biopolymer transport protein ExbDIntracellular trafficking, secretion, and vesicular transport [U] 17.19
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 4.69
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 4.69
COG2980Outer membrane lipoprotein LptE/RlpB (LPS assembly)Cell wall/membrane/envelope biogenesis [M] 0.78

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_16523123All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter1196Open in IMG/M
2166559005|cont_contig04667All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus2041Open in IMG/M
2166559005|cont_contig37692All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia982Open in IMG/M
2170459010|GIO7OMY01EQQSGAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia507Open in IMG/M
2170459012|GOYVCMS02F5HPKAll Organisms → cellular organisms → Bacteria523Open in IMG/M
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1033235All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia574Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10006158All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus2810Open in IMG/M
3300001867|JGI12627J18819_10007823All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus4144Open in IMG/M
3300002126|JGI24035J26624_1001208All Organisms → cellular organisms → Bacteria2447Open in IMG/M
3300002568|C688J35102_119615209All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia732Open in IMG/M
3300002568|C688J35102_119918180All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia814Open in IMG/M
3300005164|Ga0066815_10022646All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia890Open in IMG/M
3300005181|Ga0066678_11123945All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium505Open in IMG/M
3300005186|Ga0066676_10214530All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1243Open in IMG/M
3300005288|Ga0065714_10033377All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia979Open in IMG/M
3300005290|Ga0065712_10008845All Organisms → cellular organisms → Bacteria3594Open in IMG/M
3300005290|Ga0065712_10035985All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1121Open in IMG/M
3300005290|Ga0065712_10544710All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium621Open in IMG/M
3300005341|Ga0070691_10567063All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia666Open in IMG/M
3300005434|Ga0070709_10177730All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1492Open in IMG/M
3300005576|Ga0066708_10068556All Organisms → cellular organisms → Bacteria2035Open in IMG/M
3300005598|Ga0066706_10263857All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1344Open in IMG/M
3300005764|Ga0066903_100183750All Organisms → cellular organisms → Bacteria3089Open in IMG/M
3300005764|Ga0066903_100242745All Organisms → cellular organisms → Bacteria2766Open in IMG/M
3300005764|Ga0066903_100244740All Organisms → cellular organisms → Bacteria2757Open in IMG/M
3300005764|Ga0066903_100446576All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2158Open in IMG/M
3300005764|Ga0066903_100615809All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1886Open in IMG/M
3300005764|Ga0066903_101561702All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1249Open in IMG/M
3300005937|Ga0081455_10079251All Organisms → cellular organisms → Bacteria2697Open in IMG/M
3300006028|Ga0070717_10081536All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales2716Open in IMG/M
3300006032|Ga0066696_10018419All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales3535Open in IMG/M
3300006169|Ga0082029_1319750All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales3391Open in IMG/M
3300006172|Ga0075018_10225755All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → unclassified Herbaspirillum → Herbaspirillum sp.898Open in IMG/M
3300006796|Ga0066665_10013068All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales4914Open in IMG/M
3300006893|Ga0073928_10000014All Organisms → cellular organisms → Bacteria417065Open in IMG/M
3300006904|Ga0075424_101163271All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium821Open in IMG/M
3300009012|Ga0066710_100389148All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2075Open in IMG/M
3300009098|Ga0105245_12511256All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia569Open in IMG/M
3300009137|Ga0066709_101043370All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1199Open in IMG/M
3300009137|Ga0066709_103243188All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium593Open in IMG/M
3300009143|Ga0099792_10493892All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium765Open in IMG/M
3300009162|Ga0075423_10628898All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1132Open in IMG/M
3300009168|Ga0105104_10938483All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium509Open in IMG/M
3300009174|Ga0105241_10858261All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium840Open in IMG/M
3300009174|Ga0105241_11178006All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium725Open in IMG/M
3300009545|Ga0105237_10266840All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1715Open in IMG/M
3300009551|Ga0105238_11234255All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium772Open in IMG/M
3300009792|Ga0126374_11113414All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium627Open in IMG/M
3300010038|Ga0126315_11269066All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium501Open in IMG/M
3300010042|Ga0126314_11278879All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium549Open in IMG/M
3300010043|Ga0126380_10184144All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1380Open in IMG/M
3300010046|Ga0126384_10781694All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium853Open in IMG/M
3300010047|Ga0126382_12096325All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium541Open in IMG/M
3300010048|Ga0126373_11490953All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium742Open in IMG/M
3300010335|Ga0134063_10305321All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium766Open in IMG/M
3300010358|Ga0126370_12545891All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium511Open in IMG/M
3300010360|Ga0126372_11333515All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium747Open in IMG/M
3300010361|Ga0126378_10955717All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium962Open in IMG/M
3300010373|Ga0134128_10515985All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1332Open in IMG/M
3300010376|Ga0126381_100015339All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia8808Open in IMG/M
3300010396|Ga0134126_10825056All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1047Open in IMG/M
3300010397|Ga0134124_10106823All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2443Open in IMG/M
3300010400|Ga0134122_12258250All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium589Open in IMG/M
3300012198|Ga0137364_10401105All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter1026Open in IMG/M
3300012201|Ga0137365_10852071All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium665Open in IMG/M
3300012201|Ga0137365_11249105All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium529Open in IMG/M
3300012202|Ga0137363_11759642All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium512Open in IMG/M
3300012203|Ga0137399_10009150All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus5819Open in IMG/M
3300012208|Ga0137376_10861770All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium778Open in IMG/M
3300012285|Ga0137370_10544360All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium713Open in IMG/M
3300012351|Ga0137386_11128361All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia552Open in IMG/M
3300012354|Ga0137366_10613793All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium779Open in IMG/M
3300012361|Ga0137360_10651891All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium903Open in IMG/M
3300012362|Ga0137361_10237231All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1659Open in IMG/M
3300012510|Ga0157316_1079154All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia511Open in IMG/M
3300012582|Ga0137358_10279706All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter1134Open in IMG/M
3300012899|Ga0157299_10040609All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia998Open in IMG/M
3300012914|Ga0157297_10085278All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium915Open in IMG/M
3300012925|Ga0137419_10218221All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter1421Open in IMG/M
3300012930|Ga0137407_11277467All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium697Open in IMG/M
3300012948|Ga0126375_10010599All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus3873Open in IMG/M
3300012951|Ga0164300_10602904All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia648Open in IMG/M
3300012951|Ga0164300_10997520All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium538Open in IMG/M
3300012960|Ga0164301_10722633All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium752Open in IMG/M
3300012971|Ga0126369_12563868All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium595Open in IMG/M
3300012984|Ga0164309_10154474All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1530Open in IMG/M
3300012987|Ga0164307_10778073All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium758Open in IMG/M
3300012987|Ga0164307_11642164All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium544Open in IMG/M
3300012987|Ga0164307_11712740All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300012989|Ga0164305_10607921All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium879Open in IMG/M
3300013102|Ga0157371_11374853All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium548Open in IMG/M
3300013307|Ga0157372_12422276All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium603Open in IMG/M
3300014157|Ga0134078_10019093All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus2133Open in IMG/M
3300014325|Ga0163163_12339666All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium593Open in IMG/M
3300014326|Ga0157380_12372155All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium595Open in IMG/M
3300015357|Ga0134072_10345636All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia569Open in IMG/M
3300015371|Ga0132258_12772411All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1221Open in IMG/M
3300015372|Ga0132256_100600584All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1215Open in IMG/M
3300015374|Ga0132255_101813108All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium927Open in IMG/M
3300018071|Ga0184618_10331987All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium649Open in IMG/M
3300018431|Ga0066655_10046989All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus2205Open in IMG/M
3300019356|Ga0173481_10476939All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia630Open in IMG/M
3300019362|Ga0173479_10675916All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia553Open in IMG/M
3300019877|Ga0193722_1073706All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia844Open in IMG/M
3300022557|Ga0212123_10000583All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia115959Open in IMG/M
3300023071|Ga0247752_1020686All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300023168|Ga0247748_1030264All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia782Open in IMG/M
3300023266|Ga0247789_1027538All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia982Open in IMG/M
3300024330|Ga0137417_1263474All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2175Open in IMG/M
3300025903|Ga0207680_10175131All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1447Open in IMG/M
3300025908|Ga0207643_10188664All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1250Open in IMG/M
3300025918|Ga0207662_10590555All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium772Open in IMG/M
3300025930|Ga0207701_10055993All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3611Open in IMG/M
3300026297|Ga0209237_1225507All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium581Open in IMG/M
3300026538|Ga0209056_10014249All Organisms → cellular organisms → Bacteria7939Open in IMG/M
3300026550|Ga0209474_10060076All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2682Open in IMG/M
3300026873|Ga0207620_1015520All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium566Open in IMG/M
3300027288|Ga0208525_1040001All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium582Open in IMG/M
3300027502|Ga0209622_1002439All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2774Open in IMG/M
3300027748|Ga0209689_1031608All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3143Open in IMG/M
3300028708|Ga0307295_10120570All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium716Open in IMG/M
3300028799|Ga0307284_10207291All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium772Open in IMG/M
3300029636|Ga0222749_10525935All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300030968|Ga0075376_11516129All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300031474|Ga0170818_105202020All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300031474|Ga0170818_111633297All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1274Open in IMG/M
3300031547|Ga0310887_10562092All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia695Open in IMG/M
3300031740|Ga0307468_100713571All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia840Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil12.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.72%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.69%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.91%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.12%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere3.12%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.12%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.34%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.34%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.34%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.34%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.34%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.56%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.56%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.56%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.56%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.56%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.56%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.56%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.56%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.56%
SimulatedEngineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated1.56%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.78%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.78%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.78%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.78%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.78%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.78%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.78%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.78%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.78%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.78%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.78%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.78%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.78%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2166559005Simulated microbial communities from Lyon, FranceEngineeredOpen in IMG/M
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
2170459012Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grassEnvironmentalOpen in IMG/M
3300000596Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TCEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002126Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005288Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1Host-AssociatedOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012510Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610Host-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300023071Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5EnvironmentalOpen in IMG/M
3300023168Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026873Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027288Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)EnvironmentalOpen in IMG/M
3300027502Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030968Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_016514602088090014SoilMRKSRNATGAEETVALAAGGSILXXXXXXXXPQEKAADKS
cont_0667.000005402166559005SimulatedGPQIRMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS
cont_0692.000029102166559005SimulatedDPQIRMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS
F62_055884702170459010Grass SoilMRKSRNATGAEETVALAAGGSILPLSRIETPLQEKAADKS
N56_042814102170459012Grass SoilMRKSRNATGAEETVALAAGGSILPLSRIETPLQEKAAD
KanNP_Total_noBrdU_T14TCDRAFT_103323513300000596SoilMRKSRNATGAEETVALAAGGSILLLSRIETLPQEKAADKS*
AF_2010_repII_A001DRAFT_1000615813300000793Forest SoilDPQIRTRKSRNATGAEETVALAAGGSILPLSRIGTLPQEKAADKS*
JGI12627J18819_1000782323300001867Forest SoilMRKSHNATGAEETVALAAGGSILPLSRIETPPQEKAADKL*
JGI24035J26624_100120823300002126Corn, Switchgrass And Miscanthus RhizosphereMRKSRNATGAEETVALXAGGSIXPLSRIETLPQEKAADKS*
C688J35102_11961520923300002568SoilMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
C688J35102_11991818023300002568SoilMRKSRNATGAEETVALGAGGSILPLSRIETLPQEKAADKS*
Ga0066815_1002264623300005164SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0066678_1112394513300005181SoilRKSRNATGAEETVALAAGGSILPLSRIETQPQEKAADKS*
Ga0066676_1021453033300005186SoilMRKSRNATGAEEPVALDAGGSILPLSRIETPPQEKAADKA*
Ga0065714_1003337723300005288Miscanthus RhizosphereMRKSRNATGAEETVALGAGGSIPPLSRIETLPQEKAADKS*
Ga0065712_1000884563300005290Miscanthus RhizosphereDPQIRMRKSRNATGAEETVALAAGGSILPLSRIETPLQEKAADKS*
Ga0065712_1003598523300005290Miscanthus RhizosphereMRKSRNATGAEETVALGAGGSIXPLSRIETLPQEKAADKS*
Ga0065712_1054471023300005290Miscanthus RhizosphereSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKSLLE*
Ga0070691_1056706323300005341Corn, Switchgrass And Miscanthus RhizosphereMRKLRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0070709_1017773023300005434Corn, Switchgrass And Miscanthus RhizosphereMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAAGKS*
Ga0066708_1006855643300005576SoilATGAAEPVAPAAGDSILQLSRREKPPQEKAADKSLPKWQD*
Ga0066706_1026385733300005598SoilSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0066903_10018375023300005764Tropical Forest SoilMRKSHNATGAEETVALAAGGSILPLSRIGTLPQEKAADKS*
Ga0066903_10024274513300005764Tropical Forest SoilTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKL*
Ga0066903_10024474013300005764Tropical Forest SoilTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0066903_10044657613300005764Tropical Forest SoilMRKSHNVTGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0066903_10061580953300005764Tropical Forest SoilQIRTRKSRNAAGAEEPVALAAGGSILQLSRIETLPQEKAADKS*
Ga0066903_10156170233300005764Tropical Forest SoilSRNATGAAEPVALAAGGSILQLSRIETPPQEKAADKLLPEWQD*
Ga0081455_1007925113300005937Tabebuia Heterophylla RhizosphereDPHIRMRKSRNATGAEETVALAADGSILPLSRIETPPQEKAADKS*
Ga0070717_1008153613300006028Corn, Switchgrass And Miscanthus RhizosphereNATGAEETVALAAGGSILPLSRIETLPQEKAAGKS*
Ga0066696_1001841973300006032SoilRKSRNAAGAEEPVALAAGDSILQLSRIETPPQEKAADKS*
Ga0082029_131975033300006169Termite NestMRKLHNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0075018_1022575523300006172WatershedsMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAAGKS*
Ga0066665_1001306813300006796SoilKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0073928_100000142573300006893Iron-Sulfur Acid SpringMRKSRNATGAEESVALAAGGSILPLSRIETPPQEKAAGKS*
Ga0075424_10116327123300006904Populus RhizosphereNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0066710_10038914813300009012Grasslands SoilKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS
Ga0105245_1251125623300009098Miscanthus RhizosphereMRKSRNATGVEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0066709_10104337013300009137Grasslands SoilTRKSRNAAGAEEPVALAAGDSILQLSRIETPPQEKAADKS*
Ga0066709_10324318823300009137Grasslands SoilRTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0099792_1049389213300009143Vadose Zone SoilQIRTRKSHNATGAEETVALAAGGSILPLSRIETPLQEKAADKS*
Ga0075423_1062889813300009162Populus RhizosphereQIRTRKSRNAAGAQETVALAAGDSILLLSRIETLPQEKAADKS*
Ga0105104_1093848323300009168Freshwater SedimentRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0105241_1085826123300009174Corn RhizosphereRNATGAEETVALAAGGSILPLSRIGTLSQEKAADKS*
Ga0105241_1117800623300009174Corn RhizosphereRKLRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0105237_1026684013300009545Corn RhizosphereRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0105238_1123425523300009551Corn RhizosphereNATGAEETVVLAAGGSILPLSRIETLPQEKAADKS*
Ga0126374_1111341413300009792Tropical Forest SoilTRKSRNATGAEETVALAAGGSILPLSRIERLPQEKAADKS*
Ga0126315_1126906623300010038Serpentine SoilMRKSRNATGAEENGVLAAAGSILPLSRIETPPQEKAADKS*
Ga0126314_1127887913300010042Serpentine SoilATGAEETGVLAAAGSILPLSRIETPPQEKAADKS*
Ga0126380_1018414433300010043Tropical Forest SoilDPQIRTRKSRNATGAEETVALAAGGSILPLSRIERLPQEKAADKS*
Ga0126384_1078169413300010046Tropical Forest SoilATGAEETVALAAGGSILPLSRIERLPQEKAADKS*
Ga0126382_1209632513300010047Tropical Forest SoilIRTRKSRNATGAEETVALAAGGSILPLSRIGTLPQEKAADKS*
Ga0126373_1149095313300010048Tropical Forest SoilNATGAEETVALAAGGSILPLSRIETPPQEKAADKL*
Ga0134063_1030532113300010335Grasslands SoilATGAAEPVAPAAGDSILQLSRREKPPQEKAADKSWPRWQG*
Ga0126370_1254589113300010358Tropical Forest SoilRNAADAEETVALGADGSILPLSRIETPPQEKAAGKS*
Ga0126372_1133351523300010360Tropical Forest SoilPQIRMRKSHNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0126378_1095571723300010361Tropical Forest SoilRTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0134128_1051598533300010373Terrestrial SoilMRKSRNATGVEETVALAAGGSILPLSRIETPPQEKAADKP*
Ga0126381_100015339143300010376Tropical Forest SoilPQIRTRKSHNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0134126_1082505623300010396Terrestrial SoilMRKSRNATGAEETVVLAAGGSILPLSRIETLPQEKAADKS*
Ga0134124_1010682313300010397Terrestrial SoilRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0134122_1225825023300010400Terrestrial SoilLRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0137364_1040110513300012198Vadose Zone SoilNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0137365_1085207123300012201Vadose Zone SoilNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0137365_1124910523300012201Vadose Zone SoilHNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0137363_1175964213300012202Vadose Zone SoilKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0137399_1000915053300012203Vadose Zone SoilMRKSRNATGAEETVALVAGGSILPLSRIETPLQEKAADKS*
Ga0137376_1086177023300012208Vadose Zone SoilQIRTRKSHNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0137370_1054436013300012285Vadose Zone SoilRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0137386_1112836113300012351Vadose Zone SoilMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKW*
Ga0137366_1061379313300012354Vadose Zone SoilQIRTRKSRNATGAEETVALAAAGSILLLSRIETLPQEKAADKS*
Ga0137360_1065189113300012361Vadose Zone SoilDPQIRTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0137361_1023723133300012362Vadose Zone SoilMRKSRNATGAEETVALAAGGSILPLSRIETQPQEKAADKS*
Ga0157316_107915423300012510Arabidopsis RhizosphereMRKLRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0137358_1027970623300012582Vadose Zone SoilMRKSRNATGAEETVALAAGGSILPLSRIETPLQEKAADKS*
Ga0157299_1004060913300012899SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQGKAADKS*
Ga0157297_1008527823300012914SoilGPQIRMRKSRNATGAEETVALGAGGSILPLSRIETLPQEKAADKS*
Ga0137419_1021822113300012925Vadose Zone SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW*
Ga0137407_1127746713300012930Vadose Zone SoilNATGAEETVALAAGGSILPLSRIETPPQEKAADKWLLE*
Ga0126375_1001059983300012948Tropical Forest SoilRKSRNATGAEETVALAAGGSILPLSRIETPPQGKPADKS*
Ga0164300_1060290423300012951SoilMRKSRNATGAEETVVLAAGGSILPLSRIETPLQEKAADKS*
Ga0164300_1099752023300012951SoilRNATGAEETVALGAGGSILPLSRIETLPQEKAADKS*
Ga0164301_1072263313300012960SoilIRMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0126369_1256386823300012971Tropical Forest SoilTRKSRNAAGAEEPVALAAGGSILQLSRIETPPQEKAADKS*
Ga0164309_1015447443300012984SoilPQIRMRKSRNATGAEETVALAAGGSILPLSRIETPLQEKAADKS*
Ga0164307_1077807313300012987SoilRRKSRNATGAEETVVLAAGGSILPLSRIETLPQEKAADKS*
Ga0164307_1164216413300012987SoilMRKSHNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0164307_1171274023300012987SoilMRKSRNVTGAEETVALAAGGSILPLSRIETLPQEKAAD
Ga0164305_1060792123300012989SoilMRKSRNVTGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0157371_1137485323300013102Corn RhizosphereRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKSLLE*
Ga0157372_1242227613300013307Corn RhizosphereRNATGAEETVALAAGGSILPLSRIETPPQEKAADKP*
Ga0134078_1001909343300014157Grasslands SoilDLQIRTRKSRNAAGAEEPVALAAGDSILQLSRIETPPQEKAADKS*
Ga0163163_1233966613300014325Switchgrass RhizosphereLRNATGAEETVALAAGGSILPLSRIGTLSQEKAADKS*
Ga0157380_1237215513300014326Switchgrass RhizosphereKSRNATGAEETVALGAGGSILPLSRIETLPQEKAADKS*
Ga0134072_1034563623300015357Grasslands SoilMRKSRNATGAEETAALAAGGSILPLSSIETPPQEKAADKS*
Ga0132258_1277241113300015371Arabidopsis RhizosphereKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS*
Ga0132256_10060058423300015372Arabidopsis RhizosphereMRKSRNATGAEETVALAAGGSILPLSRIGTLPQEKAADKS*
Ga0132255_10181310823300015374Arabidopsis RhizosphereATGAEETVALAAGGSILPLSRIETPPQEKAADKS*
Ga0184618_1033198723300018071Groundwater SedimentMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS
Ga0066655_1004698933300018431Grasslands SoilMRKSRNATGAEEPVALDAGGSILPLSRIETPPQEKAADKA
Ga0173481_1047693923300019356SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS
Ga0173479_1067591613300019362SoilMRKSRNATGAEETVALGAGGSILPLSRIETLPQEKAADKS
Ga0193722_107370623300019877SoilMRKSHNATGAEETVALAAGGSILPLSRIETLPQEKAADKS
Ga0212123_10000583653300022557Iron-Sulfur Acid SpringMRKSRNATGAEESVALAAGGSILPLSRIETPPQEKAAGKS
Ga0247752_102068623300023071SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADK
Ga0247748_103026423300023168SoilMRKSRNATGAEETVALGAGGSILPLSRIETLPQEKAADKW
Ga0247789_102753823300023266SoilMRKSRNATGAEETVALGAGGSIPPLSRIETLPQEKAADKS
Ga0137417_126347423300024330Vadose Zone SoilMRKSRNATGAEETVALVAGGSILPLSRIETPLQEKAADKS
Ga0207680_1017513113300025903Switchgrass RhizosphereMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAAGKS
Ga0207643_1018866433300025908Miscanthus RhizosphereRRKSRNATGAEETVVLAAGGSILPLSRIETLPQEKAADKS
Ga0207662_1059055523300025918Switchgrass RhizosphereIRMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKS
Ga0207701_1005599333300025930Corn, Switchgrass And Miscanthus RhizosphereMRKSRNATGVEETVALAAGGSILPLSRIETPPQEKAADKP
Ga0209237_122550723300026297Grasslands SoilRTSRNAAGAVKLVARVARASILPLSRREKPPQEKAADKS
Ga0209056_1001424913300026538SoilRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKS
Ga0209474_1006007613300026550SoilQIRTRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAADKW
Ga0207620_101552023300026873SoilMRKSRNATGAEETVALAAGGSILPLSRIETPPQEKAANKS
Ga0208525_104000123300027288SoilMRKSRNASGAEESVALAAGGSILPLSRIETLPQEKAADKS
Ga0209622_100243923300027502Forest SoilMRKSHNATGAEETVALAAGGSILPLSRIETPPQEKAADKL
Ga0209689_103160813300027748SoilEPVAPAAGDSILQLSRREKPPQEKAADKSLPKWQD
Ga0307295_1012057023300028708SoilTRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAADKSSPE
Ga0307284_1020729123300028799SoilATGAEETVALAAGGSILPLSRIETLPQEKAADKSSPE
Ga0222749_1052593513300029636SoilMRKSRNATGAEESVALAADGSILPLSRIETPPQEKAAGKS
Ga0075376_1151612913300030968SoilMRKSHNATGAEETVALAAGGSILPLSRIGTLPQEKAADKS
Ga0170818_10520202023300031474Forest SoilMRKSRNATGAEETVALAAGGSILPLSRIETLPQEKA
Ga0170818_11163329733300031474Forest SoilRKSRNATGAEETVALAAGGSILPLSRIETLPQEKAAGKS
Ga0310887_1056209223300031547SoilMRKLRNATGAEESVALAAGGSILPLSRIETLPQEKAADKS
Ga0307468_10071357123300031740Hardwood Forest SoilMRKSRNATGAEETVVLAAGGSILPLSRIETPLQEKAADKS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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