Metagenome / Metatranscriptome Family F065319

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065319
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	62 residues
Representative Sequence	MGERKKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVPDQKALRPTSGEVPE
Number of Associated Samples	83
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	69.84 %
% of genes near scaffold ends (potentially truncated)	40.16 %
% of genes from short scaffolds (< 2000 bps)	90.55 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (74.803 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.008 % of family members)
Environment Ontology (ENVO)	Unclassified (49.606 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.717 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.05% β-sheet: 0.00% Coil/Unstructured: 54.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF02426	MIase	4.72
PF13701	DDE_Tnp_1_4	1.57
PF01522	Polysacc_deac_1	0.79
PF00248	Aldo_ket_red	0.79
PF00486	Trans_reg_C	0.79
PF08448	PAS_4	0.79
PF00239	Resolvase	0.79
PF07043	DUF1328	0.79
PF00496	SBP_bac_5	0.79
PF11149	DUF2924	0.79
PF01609	DDE_Tnp_1	0.79
PF04909	Amidohydro_2	0.79
PF03473	MOSC	0.79
PF03631	Virul_fac_BrkB	0.79
PF06429	Flg_bbr_C	0.79
PF12760	Zn_Tnp_IS1595	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.72
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	0.79
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.79
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	0.79
COG1749	Flagellar hook protein FlgE	Cell motility [N]	0.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.79
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.79
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.79
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.79
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.79
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	0.79
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	0.79
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.79
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.79
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.79
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
All Organisms	root	All Organisms	25.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
cellular organisms	root	All Organisms → cellular organisms	25.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.39 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.57 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.57 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.57 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	1.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.79 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.79 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.57 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.57 %
Legionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae	1.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.79 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.79 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.57 %
Legionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella	1.57 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Pseudogulbenkiania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	0.79 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Legionella santicrucis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella santicrucis	1.57 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Pseudogulbenkiania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	0.79 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.80 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Legionella santicrucis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella santicrucis	1.57 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.57 %
Bradyrhizobium sp. CCGUVB1N3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	0.79 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Pseudogulbenkiania	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	0.79 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10268091	Not Available	694	Open in IMG/M
3300004633\|Ga0066395_10079778	Not Available	1530	Open in IMG/M
3300005332\|Ga0066388_100451671	Not Available	1926	Open in IMG/M
3300005332\|Ga0066388_103648286	Not Available	786	Open in IMG/M
3300005332\|Ga0066388_106257241	Not Available	601	Open in IMG/M
3300005332\|Ga0066388_108147048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	523	Open in IMG/M
3300005436\|Ga0070713_101044781	Not Available	789	Open in IMG/M
3300005437\|Ga0070710_10743849	Not Available	696	Open in IMG/M
3300005471\|Ga0070698_101778298	Not Available	569	Open in IMG/M
3300005610\|Ga0070763_10300068	Not Available	883	Open in IMG/M
3300005764\|Ga0066903_100300870	Not Available	2538	Open in IMG/M
3300005764\|Ga0066903_100609537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1895	Open in IMG/M
3300005764\|Ga0066903_100907176	Not Available	1596	Open in IMG/M
3300005764\|Ga0066903_103198955	Not Available	886	Open in IMG/M
3300005764\|Ga0066903_104048343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	785	Open in IMG/M
3300005764\|Ga0066903_104507332	Not Available	743	Open in IMG/M
3300005764\|Ga0066903_106610884	Not Available	603	Open in IMG/M
3300009792\|Ga0126374_11206876	Not Available	606	Open in IMG/M
3300010046\|Ga0126384_10360171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1215	Open in IMG/M
3300010046\|Ga0126384_11042511	Not Available	747	Open in IMG/M
3300010047\|Ga0126382_10020817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3412	Open in IMG/M
3300010048\|Ga0126373_10563759	Not Available	1188	Open in IMG/M
3300010048\|Ga0126373_10925043	Not Available	936	Open in IMG/M
3300010358\|Ga0126370_11102735	Not Available	732	Open in IMG/M
3300010358\|Ga0126370_11968701	Not Available	570	Open in IMG/M
3300010359\|Ga0126376_12443813	Not Available	570	Open in IMG/M
3300010360\|Ga0126372_10052825	Not Available	2766	Open in IMG/M
3300010360\|Ga0126372_11220025	Not Available	777	Open in IMG/M
3300010360\|Ga0126372_12080106	Not Available	615	Open in IMG/M
3300010361\|Ga0126378_10288828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1741	Open in IMG/M
3300010361\|Ga0126378_11644700	Not Available	729	Open in IMG/M
3300010362\|Ga0126377_10194142	Not Available	1941	Open in IMG/M
3300010366\|Ga0126379_10509460	Not Available	1276	Open in IMG/M
3300010366\|Ga0126379_12332311	Not Available	635	Open in IMG/M
3300010366\|Ga0126379_12579775	Not Available	606	Open in IMG/M
3300010366\|Ga0126379_12849810	Not Available	579	Open in IMG/M
3300010366\|Ga0126379_12902899	Not Available	574	Open in IMG/M
3300010376\|Ga0126381_100211639	Not Available	2599	Open in IMG/M
3300010376\|Ga0126381_100850361	Not Available	1312	Open in IMG/M
3300010376\|Ga0126381_101186525	Not Available	1103	Open in IMG/M
3300010376\|Ga0126381_101989306	Not Available	838	Open in IMG/M
3300010376\|Ga0126381_102413039	Not Available	754	Open in IMG/M
3300010398\|Ga0126383_10534185	Not Available	1236	Open in IMG/M
3300012971\|Ga0126369_10234308	Not Available	1795	Open in IMG/M
3300012971\|Ga0126369_13118713	Not Available	543	Open in IMG/M
3300012971\|Ga0126369_13680813	Not Available	502	Open in IMG/M
3300012989\|Ga0164305_11798571	Not Available	553	Open in IMG/M
3300016270\|Ga0182036_10226664	Not Available	1386	Open in IMG/M
3300016270\|Ga0182036_11768204	Not Available	523	Open in IMG/M
3300016294\|Ga0182041_10277570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1378	Open in IMG/M
3300016294\|Ga0182041_10311726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300016341\|Ga0182035_10515599	Not Available	1023	Open in IMG/M
3300016387\|Ga0182040_10861650	Not Available	749	Open in IMG/M
3300016404\|Ga0182037_11033739	Not Available	717	Open in IMG/M
3300016422\|Ga0182039_10071903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2450	Open in IMG/M
3300016422\|Ga0182039_10166288	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300016445\|Ga0182038_10144163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Pseudogulbenkiania	1807	Open in IMG/M
3300020581\|Ga0210399_10669962	Not Available	854	Open in IMG/M
3300020583\|Ga0210401_10176878	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300021168\|Ga0210406_10699023	Not Available	781	Open in IMG/M
3300021170\|Ga0210400_10460384	Not Available	1049	Open in IMG/M
3300021170\|Ga0210400_10878715	Not Available	732	Open in IMG/M
3300021178\|Ga0210408_10148700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1855	Open in IMG/M
3300021432\|Ga0210384_11637785	Not Available	549	Open in IMG/M
3300021433\|Ga0210391_10968420	Not Available	663	Open in IMG/M
3300021478\|Ga0210402_11912438	Not Available	519	Open in IMG/M
3300021479\|Ga0210410_11534577	Not Available	559	Open in IMG/M
3300021560\|Ga0126371_10213663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2030	Open in IMG/M
3300021560\|Ga0126371_10257421	All Organisms → cellular organisms → Bacteria	1861	Open in IMG/M
3300021560\|Ga0126371_10637033	Not Available	1215	Open in IMG/M
3300021560\|Ga0126371_10663058	Not Available	1192	Open in IMG/M
3300021560\|Ga0126371_10758145	Not Available	1118	Open in IMG/M
3300021560\|Ga0126371_10931887	Not Available	1012	Open in IMG/M
3300021560\|Ga0126371_10969313	Not Available	993	Open in IMG/M
3300021560\|Ga0126371_11559286	Not Available	787	Open in IMG/M
3300021560\|Ga0126371_12869156	Not Available	584	Open in IMG/M
3300021560\|Ga0126371_13367111	Not Available	540	Open in IMG/M
3300021560\|Ga0126371_13853918	Not Available	505	Open in IMG/M
3300022530\|Ga0242658_1214246	Not Available	530	Open in IMG/M
3300022717\|Ga0242661_1073118	Not Available	679	Open in IMG/M
3300022726\|Ga0242654_10277891	Not Available	609	Open in IMG/M
3300027069\|Ga0208859_1030927	Not Available	620	Open in IMG/M
3300027903\|Ga0209488_10191553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1542	Open in IMG/M
3300028047\|Ga0209526_10122941	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300031057\|Ga0170834_111477911	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_122742562	Not Available	682	Open in IMG/M
3300031545\|Ga0318541_10003712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6194	Open in IMG/M
3300031545\|Ga0318541_10850347	Not Available	509	Open in IMG/M
3300031546\|Ga0318538_10148377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1238	Open in IMG/M
3300031561\|Ga0318528_10095612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella santicrucis	1555	Open in IMG/M
3300031572\|Ga0318515_10147325	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300031573\|Ga0310915_10031969	Not Available	3295	Open in IMG/M
3300031668\|Ga0318542_10715959	Not Available	524	Open in IMG/M
3300031680\|Ga0318574_10636015	Not Available	625	Open in IMG/M
3300031724\|Ga0318500_10424953	Not Available	663	Open in IMG/M
3300031736\|Ga0318501_10666783	Not Available	573	Open in IMG/M
3300031744\|Ga0306918_10675323	Not Available	808	Open in IMG/M
3300031765\|Ga0318554_10823019	Not Available	519	Open in IMG/M
3300031768\|Ga0318509_10026101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2798	Open in IMG/M
3300031770\|Ga0318521_10472307	Not Available	752	Open in IMG/M
3300031771\|Ga0318546_10215508	Not Available	1315	Open in IMG/M
3300031771\|Ga0318546_11146504	Not Available	546	Open in IMG/M
3300031780\|Ga0318508_1210359	Not Available	558	Open in IMG/M
3300031792\|Ga0318529_10033551	All Organisms → cellular organisms → Bacteria	2140	Open in IMG/M
3300031792\|Ga0318529_10281834	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	774	Open in IMG/M
3300031797\|Ga0318550_10292036	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300031798\|Ga0318523_10549438	Not Available	570	Open in IMG/M
3300031846\|Ga0318512_10337259	Not Available	753	Open in IMG/M
3300031879\|Ga0306919_10746000	Not Available	753	Open in IMG/M
3300031880\|Ga0318544_10036407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella santicrucis	1732	Open in IMG/M
3300031896\|Ga0318551_10078475	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300031910\|Ga0306923_10434535	Not Available	1491	Open in IMG/M
3300031912\|Ga0306921_11328485	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031942\|Ga0310916_10125015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB1N3	2097	Open in IMG/M
3300031942\|Ga0310916_11094908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300031946\|Ga0310910_10520114	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300031962\|Ga0307479_11975377	Not Available	533	Open in IMG/M
3300032041\|Ga0318549_10222415	Not Available	849	Open in IMG/M
3300032055\|Ga0318575_10550046	Not Available	586	Open in IMG/M
3300032059\|Ga0318533_10967909	Not Available	624	Open in IMG/M
3300032076\|Ga0306924_10706412	Not Available	1132	Open in IMG/M
3300032090\|Ga0318518_10140613	Not Available	1223	Open in IMG/M
3300032261\|Ga0306920_102159990	Not Available	775	Open in IMG/M
3300033289\|Ga0310914_10768623	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300033289\|Ga0310914_11216114	Not Available	655	Open in IMG/M
3300033290\|Ga0318519_11025663	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.04%
Loam	Environmental → Terrestrial → Soil → Loam	14.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	31.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_102680911	3300003505	Forest Soil	MDERERVLSNLNRYLTIRDRISDGLAIVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR*
Ga0066395_100797783	3300004633	Tropical Forest Soil	MDGREKLLSKLKRYSTIRDRISDERAVAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ*
Ga0066388_1004516713	3300005332	Tropical Forest Soil	MDERERVLSTLKRYLTIRDRVSDGIAVVVIEELIRETQERLSQIDNNEPDRKTMQQPSGEMPQ*
Ga0066388_1036482862	3300005332	Tropical Forest Soil	MGEREKLLRKLDRFLTIRNRIADGLAGTVIEELIKETEERLAQIENNVPDQKALRPTSGEVQE*
Ga0066388_1062572411	3300005332	Tropical Forest Soil	MDEREKLLSKLKRYATIRDRISDDVVVAAIKELIRETEERLRQIENNVPDQEALQPPLGEVPQ*
Ga0066388_1081470481	3300005332	Tropical Forest Soil	MDEREKLLSKLKRYSTIRDRISDERAGAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ*
Ga0070713_1010447811	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDERERVLSNLNRYLTIRDRISDGLATVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR*
Ga0070710_107438492	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDERERVLSKLNRYLTIRDRISDGLATVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR*
Ga0070698_1017782981	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDERERVRSNLKRYMTIRDRISDGLAVVVIEGLIREAEERLTQIENNIPDQKTMQPPLREVTR*
Ga0070763_103000682	3300005610	Soil	MDERERVLSKLNRYLTIRDRISDGLAIVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEMPR*
Ga0066903_1003008706	3300005764	Tropical Forest Soil	MDERERLLSKLKRYLTIRDRISDGLAVAVIEELIRETKERLTQIEDSVPDRKVTQPSSEEVPQ*
Ga0066903_1006095373	3300005764	Tropical Forest Soil	MGEREKLLSKLKRYLTIRDRISDERAVAVIEELIRETQEHLTQIEPLQPPSGEMPP*
Ga0066903_1009071764	3300005764	Tropical Forest Soil	MDELERLVGKFTCSLTIRDRLSDGLAAAVIEELIRETEERLTQIENKVPDQKAMQPPSERCRNDDLPYHSP*
Ga0066903_1031989553	3300005764	Tropical Forest Soil	MDEREKLLSKLKRYATIRDRISDELVVAAIEELIRETEERLRQIENNVPDQEALQPPLGEVPQ*
Ga0066903_1040483431	3300005764	Tropical Forest Soil	MGERKKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVPDQKALRPTS
Ga0066903_1045073322	3300005764	Tropical Forest Soil	MGEREKLLRKLERYLTIRNRISDGLAGIVIEELIKETEERLAQIENNLPDQKALRPTSGEVPE*
Ga0066903_1066108841	3300005764	Tropical Forest Soil	SKLEGYLTIRDRVSDGLAVVVIEELIRETEEHLTQIENNVPDRKVTQSSSGEVPQ*
Ga0126374_112068762	3300009792	Tropical Forest Soil	MDEREKLLSKLKRYATIRDRISDELVVAAIKELIRETEERLRQIENNVPDQEALQPPLGEVPQ*
Ga0126384_103601714	3300010046	Tropical Forest Soil	GSMDERERVLSTLKRYLTIRDRVSDGIAVVVIEELIRETQERLSQIDNNEPDRKTMQQPSGEMPQ*
Ga0126384_110425113	3300010046	Tropical Forest Soil	MDERAKLLSKLKRYATIRDRISDELVVAAIEELIRETEECLRQIENNVPDQEALQPPLGEVPQ*
Ga0126382_100208175	3300010047	Tropical Forest Soil	MDERERVLSSLIGSMDERERVLSTLKRYLTIRDRVSDGIALVVIEELIRETQERLSQIDNNEPDRKTMQQPSGEMPQ*
Ga0126373_105637592	3300010048	Tropical Forest Soil	MDERERLLTELHRYMTIRERISDGLAATVIEEMIRETEERLTQIENNVPDQKALQQGQGEG*
Ga0126373_109250432	3300010048	Tropical Forest Soil	MTAASSRRSGAIDEREKLLSKLKRYSTIRDRISDERAGAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ*
Ga0126370_111027351	3300010358	Tropical Forest Soil	MDERERLLTELHRYMTIRERISDGLAATVIEEMIRETEERLTQIENNVPDQKALQQ
Ga0126370_119687012	3300010358	Tropical Forest Soil	MGERKKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVPDQKALRPTSGEVPE*
Ga0126376_124438131	3300010359	Tropical Forest Soil	MDEREKLLSKLKRYSTIRDRISDERAVAAIEQLMKETEERLRQIENDAPDQKALNQTSGEVRNDDLPHHPS*
Ga0126372_100528253	3300010360	Tropical Forest Soil	MDEREKLLSKLKRYSTIRDRISDERAVAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ*
Ga0126372_112200251	3300010360	Tropical Forest Soil	MDEREKLLSKLKRYSTIRDRISDERAVAAIEQLIRETEERLRQIEDHAPDQKALNQTSGEVRNDDLPHHPS*
Ga0126372_120801062	3300010360	Tropical Forest Soil	MDERERVLSTLKRYLTIRDRVSDGIAVVVIEELIGETQERLSQIDNNEPDRKTMQQPSGEMPQ*
Ga0126378_102888282	3300010361	Tropical Forest Soil	MGEREKLLTKLERFLTIRNRISDGLAVTVIEELIKETEEHLAQIENNVPDQKALRRTSGEVPE*
Ga0126378_116447001	3300010361	Tropical Forest Soil	MGEREELLSKLKRYSTIRDRVSDELTVAVIEELIREIEERLRQIDNNQNLLQRPSVEVPQ
Ga0126377_101941423	3300010362	Tropical Forest Soil	MDERERVLSTLKRYLTIRDRVSDGLAVVVIEELIRETQERLSQIDNNEPDRKTMQQPSGEMPQ
Ga0126379_105094602	3300010366	Tropical Forest Soil	MDERERLLSNLKRYLTIRDRISDGLAVAVIEELIRETEERLTQIENNAPDQKVMQPPSGEVPQ*
Ga0126379_123323111	3300010366	Tropical Forest Soil	LPQAGVGAMDKREKLLGKLKRYLTIRDRISDEVAVAVIEELIKEIEERLTQIEKNVADQKSVQAISP*
Ga0126379_125797751	3300010366	Tropical Forest Soil	MGEREELLSKLKRYSTIRDRVSDELTVAVIEELIREIEERLRQIDNNQNLLQRPSGEVPQ
Ga0126379_128498101	3300010366	Tropical Forest Soil	MTAASSRRSGAIDEREKLLSKLKRYSTIRDRISDERAVAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ*
Ga0126379_129028992	3300010366	Tropical Forest Soil	VGERKKLLSKLDRFLTIRNRISDGLAATVIEELIKETEERLAQIENNVPDQKALRPTSGEVPE*
Ga0126381_1002116394	3300010376	Tropical Forest Soil	MGEREKLLSKLERFLTIRGRISDGLAVTVIEELIKETEERLAQIENNVPDQKALRPTLGEVPE*
Ga0126381_1008503613	3300010376	Tropical Forest Soil	SGAMDGREKLLSKLKRYSTIRDRISDERAVAAIEQLIRETEERLRQIEDHAPDQKALNQTSGEVRNDDLPHHPS*
Ga0126381_1011865252	3300010376	Tropical Forest Soil	VGERAKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENKMSDQKALRPPSGEVPE*
Ga0126381_1019893061	3300010376	Tropical Forest Soil	KLLSKLTRYLTIRDRISDGLAVAVMEELIRETEERLTQIENNVSDQKASGEVQR*
Ga0126381_1024130393	3300010376	Tropical Forest Soil	LSKLDRFLTIRNRISDGLAATVIEELIKEKEERLAQIEKNVPDQKAVRPTSAEVPE*
Ga0126383_105341851	3300010398	Tropical Forest Soil	MTAASSRRSGAIDEREKLLSKLKRYSTIRDRISDERAGAAIEQLMKETEERLRQIENDAPDQKALKPASGEV
Ga0126369_102343083	3300012971	Tropical Forest Soil	MDEREKLLSKLKRYATIRDRISDELVVAAIEELIRETEECLRQIENNVPDQEALQPPLGEVPQ*
Ga0126369_131187131	3300012971	Tropical Forest Soil	GALSARSGAMGEREKLLTKLERFLTIRNRISDGLAVTVIEDLIKETEVRLAQIENNVPDQKALRRTSGEVPE*
Ga0126369_136808131	3300012971	Tropical Forest Soil	MDERERLLSKLEGYLTIRDRVSDGLAVVVIEELIRETEEHLTQIENNVPDRKV
Ga0164305_117985711	3300012989	Soil	MDERERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRK
Ga0182036_102266642	3300016270	Soil	MDEREKLLSRIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKALQPPSTEVPA
Ga0182036_117682041	3300016270	Soil	VGERAKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0182041_102775701	3300016294	Soil	VGERAKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVPDQKALRPTS
Ga0182041_103117262	3300016294	Soil	MDEREKLLSKIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTELPA
Ga0182035_105155993	3300016341	Soil	GERAKLLSKLDRFLTIRNRISDGLAGIVIEELIKETEVRLGQIENNVPDQKALRPTSGEVPE
Ga0182040_108616502	3300016387	Soil	KRYLTIRDRISDELAVAAIEELIRETEERLAQITNNAPDQKALQPSSTEVPA
Ga0182037_110337391	3300016404	Soil	VGERAKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLARIENNLPDQKVLRRTSGEVPE
Ga0182039_100719032	3300016422	Soil	MDEREKLLSKIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKALQPSSTEVPA
Ga0182039_101662883	3300016422	Soil	VGERAKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVSDQ
Ga0182038_101441633	3300016445	Soil	VRGRAVGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0210399_106699621	3300020581	Soil	MDERERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0210401_101768784	3300020583	Soil	MGEREKLLSKLERYFTIRNGISDRLAVSVIEELIKETEVRLAQIENNAPDQKALEPTSGEVRE
Ga0210406_106990231	3300021168	Soil	ERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0210400_104603841	3300021170	Soil	MDERERVLSNLNRYLTIRDRISDGLAIVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVP
Ga0210400_108787151	3300021170	Soil	MDERERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRKAMQPPSEEVP
Ga0210408_101487005	3300021178	Soil	MDERERVQSNLKRCLTIRDRISDGLAVVVIEGLIREAEERLTQIENNVSDQKTMQPPLREVTR
Ga0210384_116377851	3300021432	Soil	MDERERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRKAMQHPS
Ga0210391_109684202	3300021433	Soil	WEVGTMDERERVLSNLNRYLTIRDRISDGLAIVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0210402_119124381	3300021478	Soil	MGEREKLLSKLERYFTIRNGISDRLAVSVIEELIKETEVRLAQIENNAPDQKALEPTSGEMRE
Ga0210410_115345771	3300021479	Soil	MDERERVLSKLNRYLTIRDRISDGLATVVIEELIRETEERLTQIDNNVQGRKA
Ga0126371_102136634	3300021560	Tropical Forest Soil	MDERERLLSNLKRYLTIRDRISDGLAVAVIEELIRETEERLTQIENNAPDQKVMQPPSGEVPQ
Ga0126371_102574212	3300021560	Tropical Forest Soil	MDEREKLLSKLKRYATIRDRISDELVVAAIEELIRETEERLRQIENNVPDQEALQPPLGEVPQ
Ga0126371_106370332	3300021560	Tropical Forest Soil	MGEREKLLSKLTRYLTIRDRISDGLAVAVMEELIRETEERLTQIENNVSDQKASGEVQR
Ga0126371_106630581	3300021560	Tropical Forest Soil	MDEREKLLSKIKRYLTIRDRISDELAVAAIEELIRETEERLAQITNNAPDQKALQPPSTEVPA
Ga0126371_107581452	3300021560	Tropical Forest Soil	MDGREKLLSKLKRYSTIRDRISDERAVAAIEQLIRETEERLRQIEDHAPDQKALNQTSGEVRNDDLPHHPS
Ga0126371_109318872	3300021560	Tropical Forest Soil	MGEREKLLSKLERFLTIRNRISNGLAVTVIEELIKETEERLAKAENNVPDQKALRPILREVPE
Ga0126371_109693132	3300021560	Tropical Forest Soil	MGEREKLLRKLDRFLTIRNRIADGLAGTVIEELIKETEERLAQIENNVPDQK
Ga0126371_115592861	3300021560	Tropical Forest Soil	MDERERLLSKLKRYLTIRDRISDGLAVAVIEELIRETKERLTQIEDSVPDRKVTQPSSEEVPQ
Ga0126371_128691561	3300021560	Tropical Forest Soil	MDEREKLLSKLKRYSTIRDRISDERAVAAIEQLMKETEERLRQIENDAPDQKALKPASGEVSQ
Ga0126371_133671113	3300021560	Tropical Forest Soil	QVWEVGVMDERERLLSKLEGYLTIRDRVSDGLAVVVIEELIRETEEHLTQIENNVPDRKVTQSSSGEVPQ
Ga0126371_138539182	3300021560	Tropical Forest Soil	MDERERLLTELHRYMTIRERISDGLAATVIEEMIRETEERLTQIENNVPDQKALQQGQGE
Ga0242658_12142462	3300022530	Soil	GTMDERERVLSNLNRYLTIRDRISDGLAIVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0242661_10731183	3300022717	Soil	TMDERERVLSKLNRYLTIRDRISDGLATVVVEELIRETEERLTQIDNNVPGRKSMQPPSEEVPR
Ga0242654_102778912	3300022726	Soil	VGTMDERERVLSKLNRYLTIRDRISDGLATVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0208859_10309271	3300027069	Forest Soil	ERVLSKLNRYLTIRDRISDGLATVVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0209488_101915532	3300027903	Vadose Zone Soil	MDERERVLSNLKRCMTIRDRISDGLAVVVIEELIREAEERLTQIENNVPDQKTMQPPLREVTR
Ga0209526_101229412	3300028047	Forest Soil	MDEREKVLSNLKRYMTIRDRISDGLAVVVIEGLIREAEERLTQIENNVPDQKIMQPPLREVTR
Ga0170834_1114779112	3300031057	Forest Soil	LSWEVGTMDERERVLSKLNRYLTIRDRISDGLETVVVEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0170824_1227425621	3300031231	Forest Soil	MDERERVLSKLNRYLTIRDRISDGLETVVVEELIRETEERLTQIDNNAPRRKAMQPPSEEVPR
Ga0318516_105298821	3300031543	Soil	MGEREKLLSKLKRYLTIRDRISDERAVAVIEELIRETQEHLTQIEPLQPPSGEMPP
Ga0318541_100037129	3300031545	Soil	RLPQLEVGAMGEREKLLSKLKRYLTIRDRISDERAVAVIEELIRETQEHLTQIEPLQPPSGEMPP
Ga0318541_108503472	3300031545	Soil	MDERERLLGKLDRFLTIRDRVCGGLAVTVIEELIRETEERLKQIENKVPDQK
Ga0318538_101483773	3300031546	Soil	MDEREKLLSKVKRYLKIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTELPA
Ga0318528_100956122	3300031561	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0318515_101473252	3300031572	Soil	VGERAKLLSKLDRFLTIRNRISDGLAGTVIEELIKETGERLAQIENNLSDQKALRPTSGEVPE
Ga0310915_100319694	3300031573	Soil	MDEREKLLSRIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKALQPSSTEVPA
Ga0318542_107159591	3300031668	Soil	MDEREKLLSRIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTELPA
Ga0318574_106360151	3300031680	Soil	MDERERLLGKLDRFLTIRDRVCGGLAVTVIEELIRETEERLKQIENKVPDQKALRTTFGEVPQ
Ga0318500_104249531	3300031724	Soil	LDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0318501_106667831	3300031736	Soil	RSGQWESGEKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0306918_106753231	3300031744	Soil	MDEREKLLSKIKRYLTIRDRISDELAVAAIEELIRETEERLAQITNNAPDQKALQPSSTEVPA
Ga0318554_108230192	3300031765	Soil	VGEREKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0318509_100261014	3300031768	Soil	LMDEREKLLSRIKRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTELPA
Ga0318521_104723071	3300031770	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENKMSDQKALRPTSGEVPE
Ga0318546_102155081	3300031771	Soil	MDEREKLLSKVKRYLKIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTE
Ga0318546_111465041	3300031771	Soil	MDERERLLGKLDRFLTIRDRVCGGLAVTVIEELIRETEERLKQIENKVPDQKALRTAFGEVPQ
Ga0318508_12103592	3300031780	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0318529_100335514	3300031792	Soil	EKLLSKVKRYLKIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKARQPPSTELPA
Ga0318529_102818341	3300031792	Soil	AMGEREKLLSKLKRYLTIRDRISDERAVAVIEELIRETQEHLTQIEPLQPPSGEMPP
Ga0318550_102920361	3300031797	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVSDQKALR
Ga0318523_105494381	3300031798	Soil	MGEREKLLSKLERFLIIRNRISNGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0318512_103372591	3300031846	Soil	MDEREKLLSRIKRYLTIRDRISDELAVAAIEELIRETEERLAQITNNAPDQKALQP
Ga0306919_107460001	3300031879	Soil	VGAVGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0318544_100364072	3300031880	Soil	VRGRAVGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETGERFAQIENNLSDQKALRPTSGEVPE
Ga0318551_100784752	3300031896	Soil	VGERAKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEDRLAQIENNLSDQKALRPTSGEVPE
Ga0306923_104345351	3300031910	Soil	VGERAKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0306921_113284852	3300031912	Soil	MDERERLLSKLNRFLTIRDRISDGLAVAVIEDLIRETEERLTQIENKVPDQKAMQPGSERYRND
Ga0310916_101250151	3300031942	Soil	MDEREKLLSKVKRYLKIRDRISDELAVAAIEELIRETEERLAQITNNAPDQKALQPPSTEVPA
Ga0310916_110949082	3300031942	Soil	MGEREKLLSKLERYFTIRNRVSDGLAVSAIEELIKETEVRLGQIENNVPDQKALRPTSGEVPE
Ga0310910_105201142	3300031946	Soil	VGERAKLLSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0307479_119753771	3300031962	Hardwood Forest Soil	MDERERVLSKLNRYLTIRDRISDGLATLVIEELIRETEERLTQIDNNVPGRKAMQPPSEEVPR
Ga0318549_102224152	3300032041	Soil	VGERAKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNLSDQKALRPTSGEVPE
Ga0318575_105500461	3300032055	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETGERLAQIENNLSDQKALRPTSGEVPE
Ga0318533_109679091	3300032059	Soil	KRYLTIRDRISDELAVAAIEELIRETEERLAQIENNVPDQKALQPPSTEVPA
Ga0306924_107064123	3300032076	Soil	LSKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0318518_101406131	3300032090	Soil	RFTGAKAASGARSGQWESGEKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE
Ga0306920_1021599901	3300032261	Soil	MDERERLLGKLDRFLTIRDRVCGGLAVTVIEELIRETEERLKQIENKVPDQKVLRTTFGE
Ga0310914_107686231	3300033289	Soil	MDERERLLGKLDRFLTIRDRVCGGLAVTVIEELIRETEERLKQIENKVPDQKVLRTTFGEVPQ
Ga0310914_112161142	3300033289	Soil	VGEREKLLSKLDRFLTIRNRISDGLAGTVIEELIKETEDRLAQIENNLSDQKALRPTSGEVPE
Ga0318519_110256632	3300033290	Soil	SKLDRFLTIRNRISDGMAGTVIEELIKETEERLAQIENNVSDQKALRPTSGEVPE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065319

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences