NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F065827

Metagenome / Metatranscriptome Family F065827

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F065827
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 73 residues
Representative Sequence MIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN
Number of Associated Samples 100
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 8.73 %
% of genes near scaffold ends (potentially truncated) 28.35 %
% of genes from short scaffolds (< 2000 bps) 85.04 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (86.614 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere
(9.449 % of family members)
Environment Ontology (ENVO) Unclassified
(40.157 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.480 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.50%    β-sheet: 17.31%    Coil/Unstructured: 70.19%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF13602ADH_zinc_N_2 33.86
PF00107ADH_zinc_N 12.60
PF08240ADH_N 6.30
PF00892EamA 2.36
PF01564Spermine_synth 1.57
PF13103TonB_2 1.57
PF12847Methyltransf_18 0.79
PF13519VWA_2 0.79
PF13432TPR_16 0.79
PF11937DUF3455 0.79
PF00027cNMP_binding 0.79
PF12770CHAT 0.79
PF13659Obsolete Pfam Family 0.79
PF01135PCMT 0.79
PF01594AI-2E_transport 0.79
PF07589PEP-CTERM 0.79
PF13520AA_permease_2 0.79
PF02518HATPase_c 0.79
PF00857Isochorismatase 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG0628Predicted PurR-regulated permease PerMGeneral function prediction only [R] 0.79
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.79
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.79
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.79
COG2518Protein-L-isoaspartate O-methyltransferasePosttranslational modification, protein turnover, chaperones [O] 0.79
COG2519tRNA A58 N-methylase Trm61Translation, ribosomal structure and biogenesis [J] 0.79
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 0.79

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.61 %
UnclassifiedrootN/A13.39 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001431|F14TB_102011416All Organisms → cellular organisms → Bacteria2050Open in IMG/M
3300002124|C687J26631_10140336All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300003319|soilL2_10317933All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300004009|Ga0055437_10258041All Organisms → cellular organisms → Bacteria → Acidobacteria572Open in IMG/M
3300004157|Ga0062590_100183412All Organisms → cellular organisms → Bacteria1487Open in IMG/M
3300004463|Ga0063356_100037839All Organisms → cellular organisms → Bacteria4731Open in IMG/M
3300004463|Ga0063356_100421207All Organisms → cellular organisms → Bacteria1728Open in IMG/M
3300004463|Ga0063356_101285007Not Available1069Open in IMG/M
3300004463|Ga0063356_101839051Not Available911Open in IMG/M
3300004463|Ga0063356_103741799All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium655Open in IMG/M
3300004463|Ga0063356_106128355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium515Open in IMG/M
3300004480|Ga0062592_100264776All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300004643|Ga0062591_102110438All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium584Open in IMG/M
3300005295|Ga0065707_10654964All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300005331|Ga0070670_100016158All Organisms → cellular organisms → Bacteria6406Open in IMG/M
3300005332|Ga0066388_106078297All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300005332|Ga0066388_106945166All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium570Open in IMG/M
3300005334|Ga0068869_100239212All Organisms → cellular organisms → Bacteria1446Open in IMG/M
3300005334|Ga0068869_100901013All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300005335|Ga0070666_10422734Not Available960Open in IMG/M
3300005335|Ga0070666_10542377All Organisms → cellular organisms → Bacteria → Acidobacteria845Open in IMG/M
3300005344|Ga0070661_101347200All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300005347|Ga0070668_101234336All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300005354|Ga0070675_100597773All Organisms → cellular organisms → Bacteria1000Open in IMG/M
3300005355|Ga0070671_100011791All Organisms → cellular organisms → Bacteria7032Open in IMG/M
3300005364|Ga0070673_100295956All Organisms → cellular organisms → Bacteria1424Open in IMG/M
3300005367|Ga0070667_100054573All Organisms → cellular organisms → Bacteria → Acidobacteria3374Open in IMG/M
3300005438|Ga0070701_10842250All Organisms → cellular organisms → Bacteria → Acidobacteria629Open in IMG/M
3300005450|Ga0066682_10585096All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300005456|Ga0070678_101249220All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300005518|Ga0070699_101852129All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300005544|Ga0070686_100483685Not Available958Open in IMG/M
3300005577|Ga0068857_101842038All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium592Open in IMG/M
3300005617|Ga0068859_102670744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300005618|Ga0068864_101121162All Organisms → cellular organisms → Bacteria → Acidobacteria783Open in IMG/M
3300005764|Ga0066903_100941147All Organisms → cellular organisms → Bacteria1570Open in IMG/M
3300005764|Ga0066903_105408486All Organisms → cellular organisms → Bacteria → Acidobacteria674Open in IMG/M
3300005836|Ga0074470_10171573All Organisms → cellular organisms → Bacteria3489Open in IMG/M
3300005844|Ga0068862_101788030All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300006046|Ga0066652_100093848All Organisms → cellular organisms → Bacteria2404Open in IMG/M
3300006358|Ga0068871_100946687All Organisms → cellular organisms → Bacteria → Acidobacteria800Open in IMG/M
3300006844|Ga0075428_100965514All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300006865|Ga0073934_10000652All Organisms → cellular organisms → Bacteria96545Open in IMG/M
3300006881|Ga0068865_101000543All Organisms → cellular organisms → Bacteria → Acidobacteria732Open in IMG/M
3300007004|Ga0079218_10002620All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia7121Open in IMG/M
3300007004|Ga0079218_11612667Not Available712Open in IMG/M
3300007004|Ga0079218_11731956All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium695Open in IMG/M
3300007004|Ga0079218_13651503All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium523Open in IMG/M
3300009012|Ga0066710_100044265All Organisms → cellular organisms → Bacteria5417Open in IMG/M
3300009012|Ga0066710_101326103Not Available1116Open in IMG/M
3300009094|Ga0111539_10232329All Organisms → cellular organisms → Bacteria2147Open in IMG/M
3300009094|Ga0111539_11220692All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium873Open in IMG/M
3300009100|Ga0075418_11770814Not Available672Open in IMG/M
3300009137|Ga0066709_103481086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300009156|Ga0111538_12515310All Organisms → cellular organisms → Bacteria → Acidobacteria646Open in IMG/M
3300009156|Ga0111538_13311271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300009176|Ga0105242_11554947All Organisms → cellular organisms → Bacteria → Proteobacteria694Open in IMG/M
3300010047|Ga0126382_11084547Not Available709Open in IMG/M
3300010397|Ga0134124_10617272All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300010401|Ga0134121_10000684All Organisms → cellular organisms → Bacteria → Acidobacteria36485Open in IMG/M
3300010401|Ga0134121_12732168All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium539Open in IMG/M
3300010403|Ga0134123_11390215All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300010403|Ga0134123_13452023All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300011333|Ga0127502_10656398All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium504Open in IMG/M
3300011421|Ga0137462_1137840All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300012212|Ga0150985_114722030Not Available557Open in IMG/M
3300012362|Ga0137361_11804441All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium530Open in IMG/M
3300012893|Ga0157284_10038668Not Available1035Open in IMG/M
3300012895|Ga0157309_10202368All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300012905|Ga0157296_10014799All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300012923|Ga0137359_10791570All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300012948|Ga0126375_11849167All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300012971|Ga0126369_13120661All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300013102|Ga0157371_10985581All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300013297|Ga0157378_13223015All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium507Open in IMG/M
3300013308|Ga0157375_12074929Not Available676Open in IMG/M
3300014325|Ga0163163_11161904Not Available835Open in IMG/M
3300014969|Ga0157376_10821305All Organisms → cellular organisms → Bacteria943Open in IMG/M
3300015371|Ga0132258_10790642All Organisms → cellular organisms → Bacteria2392Open in IMG/M
3300015371|Ga0132258_11850832All Organisms → cellular organisms → Bacteria → Acidobacteria1520Open in IMG/M
3300015372|Ga0132256_101043652All Organisms → cellular organisms → Bacteria → Acidobacteria932Open in IMG/M
3300015373|Ga0132257_102855490All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300015373|Ga0132257_103318010All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300015374|Ga0132255_101905166Not Available904Open in IMG/M
3300015374|Ga0132255_104421183All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300015374|Ga0132255_105143265All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300015374|Ga0132255_106301523All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium502Open in IMG/M
3300017792|Ga0163161_10181546All Organisms → cellular organisms → Bacteria → Acidobacteria1614Open in IMG/M
3300018476|Ga0190274_10193702All Organisms → cellular organisms → Bacteria1778Open in IMG/M
3300019362|Ga0173479_10020700All Organisms → cellular organisms → Bacteria1870Open in IMG/M
3300019362|Ga0173479_10488414All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium618Open in IMG/M
3300019487|Ga0187893_10381590All Organisms → cellular organisms → Bacteria → Acidobacteria963Open in IMG/M
3300021951|Ga0222624_1549145All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300023062|Ga0247791_1053919All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300025310|Ga0209172_10001685All Organisms → cellular organisms → Bacteria44495Open in IMG/M
3300025324|Ga0209640_10180521All Organisms → cellular organisms → Bacteria1799Open in IMG/M
3300025903|Ga0207680_10326063All Organisms → cellular organisms → Bacteria1075Open in IMG/M
3300025908|Ga0207643_10753418All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300025920|Ga0207649_11560359All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300025925|Ga0207650_10610905All Organisms → cellular organisms → Bacteria917Open in IMG/M
3300025926|Ga0207659_10007527All Organisms → cellular organisms → Bacteria6705Open in IMG/M
3300025926|Ga0207659_10009425All Organisms → cellular organisms → Bacteria6100Open in IMG/M
3300025931|Ga0207644_10057257All Organisms → cellular organisms → Bacteria2814Open in IMG/M
3300025931|Ga0207644_10625335All Organisms → cellular organisms → Bacteria → Acidobacteria895Open in IMG/M
3300025933|Ga0207706_11737848All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300025934|Ga0207686_10379424All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300025937|Ga0207669_11358018All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300025941|Ga0207711_10001075All Organisms → cellular organisms → Bacteria → Acidobacteria26081Open in IMG/M
3300025942|Ga0207689_11020675All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300025986|Ga0207658_10222346All Organisms → cellular organisms → Bacteria → Acidobacteria1589Open in IMG/M
3300026095|Ga0207676_11044969All Organisms → cellular organisms → Bacteria → Acidobacteria806Open in IMG/M
3300027907|Ga0207428_10525846All Organisms → cellular organisms → Bacteria → Acidobacteria857Open in IMG/M
3300027907|Ga0207428_10896988All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300028380|Ga0268265_10708136All Organisms → cellular organisms → Bacteria973Open in IMG/M
3300028381|Ga0268264_11127267Not Available793Open in IMG/M
3300031058|Ga0308189_10527065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300031538|Ga0310888_10232805All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300031716|Ga0310813_11941132All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300031740|Ga0307468_102326810All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium521Open in IMG/M
3300031847|Ga0310907_10665660All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium573Open in IMG/M
3300031858|Ga0310892_10096426Not Available1607Open in IMG/M
3300032000|Ga0310903_10271664Not Available824Open in IMG/M
3300032157|Ga0315912_10133222All Organisms → cellular organisms → Bacteria1947Open in IMG/M
3300032180|Ga0307471_103792625All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300034661|Ga0314782_140726All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium583Open in IMG/M
3300034662|Ga0314783_087848All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium646Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere9.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.09%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere6.30%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.30%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.72%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere4.72%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.15%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.15%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.15%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.36%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.36%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.36%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.36%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment1.57%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.57%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.57%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.57%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil1.57%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.57%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.79%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.79%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.79%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.79%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.79%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.79%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002124Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3EnvironmentalOpen in IMG/M
3300003319Sugarcane bulk soil Sample L2EnvironmentalOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011333Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011421Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300021951Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023062Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034661Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TB_10201141633300001431SoilMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDVLMVLIENXXXXXXXXELPDGTISLDTCXXXXXXXXINHSTAVN*
C687J26631_1014033623300002124SoilMIRNLVRTCDMCHRQIPAGQYMQRDSERNAPDVQMILAENQDRELQLIVMPDGSISMDTCVTCYTRMPFNSSTGLN*
soilL2_1031793323300003319Sugarcane Root And Bulk SoilMIKALIRTCDLCHRTIPSGEYRQRNSDRYGPDVLTVLMENQDREIKLIEMPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0055437_1025804113300004009Natural And Restored WetlandsMIKDLIRTCDMCHRAIPAGQYFQRNSDRNGPDVLMVLMENLGRELRLIELPDGTVSLDTCSNCYERMPFNHSTAVN*
Ga0062590_10018341223300004157SoilMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN*
Ga0063356_10003783933300004463Arabidopsis Thaliana RhizosphereMIKDLTRTCDMCHKMIPSGKYVQRNSDRNGPDVLMVLVENDDRELKLIELPDGSISLDTCFNCYTRMPFSHSTALN*
Ga0063356_10042120723300004463Arabidopsis Thaliana RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLMENADRDLRLIEMPDGKISLDTCFSCFSRMPFNHSSAVN*
Ga0063356_10128500723300004463Arabidopsis Thaliana RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0063356_10183905113300004463Arabidopsis Thaliana RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRYGPDVLTILMENQERDLRLIEMPDGSISMDTCLSCYSRMPFNHSTALN*
Ga0063356_10374179933300004463Arabidopsis Thaliana RhizosphereMIKDLTRTCDMCHKMIPSGEYVQRNSDRNGPDVMMVLVENEDRELRLIELPDGSISLDTCWSCYTRMPF
Ga0063356_10612835513300004463Arabidopsis Thaliana RhizosphereMIKNLIRTCDMCHRQIPAGKYVQRNSDPNGPDIRMVLVENQDRDLQLIELPDGNISLDTCWNCYSRMPFNPSTSLN*
Ga0062592_10026477623300004480SoilMIKDLTRTCDLCHRMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN*
Ga0062591_10211043823300004643SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVK*
Ga0065707_1065496413300005295Switchgrass RhizosphereMIKDLTRTCDICHRTIPSGEYVQRNSERNGADVLMVLIENEDRDLRLIEMPDGTISLDTCLSCYSRVP
Ga0070670_10001615853300005331Switchgrass RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNAERNGPDVLMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPWNHSSAVN*
Ga0066388_10607829723300005332Tropical Forest SoilMIKDLIRTCDMCHREIPSGEYVQRNSDRDGLDVLMVLIENEDRDLQLIELPDGSISLDTCFNCYSRMPFNHSSAL
Ga0066388_10694516613300005332Tropical Forest SoilMIRNLVRTCDMCHKEIPAGKYVQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYTRMGFTYSQALN*
Ga0068869_10023921233300005334Miscanthus RhizosphereHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN*
Ga0068869_10090101323300005334Miscanthus RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRDGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0070666_1042273413300005335Switchgrass RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0070666_1054237723300005335Switchgrass RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNAPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN*
Ga0070661_10134720013300005344Corn RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNLDRDGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYSRMPFNHST
Ga0070668_10123433613300005347Switchgrass RhizosphereMIKDLTRTCDMCHRQIPTGEYMQRNSERSGPDVLMVLIENEDRELRLIEMPDGTISLDTCLSCYSRIPFNHSTAVN*
Ga0070675_10059777323300005354Miscanthus RhizosphereMIKELIRTCDLCHRAIPSGEYFQRNSDRYGPEVLTILMENEDRDLRLIEMPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0070671_10001179163300005355Switchgrass RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0070673_10029595613300005364Switchgrass RhizosphereIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0070667_10005457313300005367Switchgrass RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN*
Ga0070701_1084225013300005438Corn, Switchgrass And Miscanthus RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNAPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0066682_1058509613300005450SoilMVRNLVRTCDMCHKEIPAGKYVQRNAERSGLDVLMVLAENQGRELQLIELPDGSIALDTCMDCYTRMAFSYSHALN*
Ga0070678_10124922023300005456Miscanthus RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0070699_10185212913300005518Corn, Switchgrass And Miscanthus RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN*
Ga0070686_10048368523300005544Switchgrass RhizosphereIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN*
Ga0068857_10184203813300005577Corn RhizosphereLYNYLLYSSSKRDMIKDLTRTCDLCHRMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN*
Ga0068859_10267074423300005617Switchgrass RhizosphereMIRNLIRTCDMCHREIPAGQYMQRYSDRNAPDVAMILAENQDRELKLIELPDGSISMDTCLTCYTRMPFSSSSVLN*
Ga0068864_10112116213300005618Switchgrass RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRDGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYS
Ga0066903_10094114723300005764Tropical Forest SoilMIKDLTRTCDMCRRPIPSGEYVQRNSDRNGPDILMVLMENEDRELKLIELPDGTISLDTCLSCYSRMPFSHSLAVN*
Ga0066903_10540848623300005764Tropical Forest SoilMIRNLVRTCDMCHKEIPAGKYLQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYS
Ga0074470_1017157323300005836Sediment (Intertidal)MIDNLIRTCDMCHRPIPNGQYFARNLDRNDPDVIMVLVENQDRDLKLIELPDGTVSLDTCRSCYSRMPFIHSRALN*
Ga0068862_10178803013300005844Switchgrass RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHS
Ga0066652_10009384823300006046SoilMIKNLIRSCDMCHREIPAGQYRQRHSDRNAPDVLMILAENQDRDLQLIELPDGSISMDTCLTCYTRMPFTSSSGLN*
Ga0068871_10094668713300006358Miscanthus RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYS
Ga0075428_10096551423300006844Populus RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRYGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0073934_10000652373300006865Hot Spring SedimentMITNLVRTCDMCHKEIPAGKYVQRNADRFGLEVLMVLAENEGRELQLIELPDGTIALDTCVECCSRMGFQHSQALN*
Ga0068865_10100054333300006881Miscanthus RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSSYSRMPFNHSNAVN*
Ga0079218_1000262013300007004Agricultural SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDVLMVLMENVDRDLRLIEMPDGTISLDTCFSCYS
Ga0079218_1161266723300007004Agricultural SoilMIKDLTRTCDMCHRTIPTGEYVQRNSERNGPDVLMVLVENVDRELRLIEMPDGSISLDTCFSCYSRMPFNHSTAVN*
Ga0079218_1173195613300007004Agricultural SoilMIKQLVRTCDMCHHEIPEGKYFQRNRERTGLEVLMVLMENQGRELQLIELPDGSIAMDTCRSCYSRMGFTHSHELN*
Ga0079218_1365150313300007004Agricultural SoilMIRNLVRTCDMCHRQIPAGKYVQRNSDRHGPDVLMVLAENQDRDLQLIELPDGVISMDTCMSCYSRMGFSNFSQAMN*
Ga0066710_10004426523300009012Grasslands SoilMIKDLVRTCDMCHKEIPAGKYVQRNADRFGPDVLMVLAEYEDRELQLIELPDGSIALDTCRDFYTRIAFNSRQALN
Ga0066710_10132610313300009012Grasslands SoilMVRNLVRTCDMCHKEIPAGKYVQRNAERSGLDVLMVLAENQGRELQLIELPDGSIALDTCMDCYTRMAFSYSHALN
Ga0111539_1023232923300009094Populus RhizosphereMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN*
Ga0111539_1122069223300009094Populus RhizosphereMIPSGEYVQRNSHRNGPDVLMVLVENEDRDLRLIELPDGSISLDTCFSCYSRMPFNHSTALN*
Ga0075418_1177081413300009100Populus RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRYGPEVLTILMENEDRDLKLIELPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0066709_10348108613300009137Grasslands SoilMCHKEIPAGKYVQRNADRFGPDVLMVLAENEDRELQLIELPDGSIALDTCMDCYTRMAFN
Ga0111538_1251531013300009156Populus RhizosphereMIKDLIRTCDICRRTIPTGEYVQRNSDRNGPDILMVLMENEDREVRLIELPDGSISLDTCLSCYSRVPFNHSLAIN*
Ga0111538_1331127113300009156Populus RhizosphereMCHREIPVGQYLQRNSERTGLDVLMVLMENQGRELQLIELPDGSIALDTCRNCYSRMGFTHSHELN*
Ga0105242_1155494713300009176Miscanthus RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN*
Ga0126382_1108454713300010047Tropical Forest SoilMIKDLIRTCDMCHREIPSGEYVQRNSDRDGLDVLMVLIENEDRDLQLIELPDGSISLDTCFNCYSRMPFNHSSALN*
Ga0134124_1061727223300010397Terrestrial SoilMIRNLVRTCDMCHKEIPAGKYIQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYSRMGFSYSQALN*
Ga0134121_10000684123300010401Terrestrial SoilMIKNLIRTCDMCHRQIPAGQYMQRYSDRNGPDVLMILAENQGRDLQLIELPDGSISMDTCVTCYTRMPFTSSTGLN*
Ga0134121_1089548923300010401Terrestrial SoilMCHRIIRSGEYRQRNADRSGPDVMMILVENADRELQLTEMPDGSISMDTCINCYTRMAFTHSQALN*
Ga0134121_1273216813300010401Terrestrial SoilYLQRNSERSSLDVLMVLIENQGRELQLIELPDGTIALDTCQDCYSRMAFNHSQTLN*
Ga0134123_1139021523300010403Terrestrial SoilMIKNLIRSCDMCHRQIPAGQYMQRHSDRNAPDVLMILAENQDRDLQLIELPDGSISMDTCVTCYTRMPFTSSSGLN*
Ga0134123_1345202313300010403Terrestrial SoilMIKNLIRTCDMCHREISAGQYMQRYSERNAPDVLMILAENQDRELQLIEMPDGSISMDTCVTCYTRMPFTSSSRLN*
Ga0127502_1065639823300011333SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDVLMVLIENLDRELKLIEMPDGTISLDTCFSCYSRMPFNHSSAVN*
Ga0137462_113784023300011421SoilMIKNLIRSCDMCHRQIPAGQYMQRHSDRNAPDVLMILAENQDRDLQLIELPDGSISMDTCRTCYTRMPFTSSSGLN*
Ga0150985_11472203023300012212Avena Fatua RhizosphereCDMCHRDIPTGEYLQRNSERTGLDVMMVLLENQGRELQLIELPDGTISLDTCRTCYSRMGFTHSHELN*
Ga0137361_1180444123300012362Vadose Zone SoilMIRNLIRTCDMCHKEIPAGKYVQRNAERSGLDVLMVLAENQGRELQLIELPDGSISLDTCMDCYTRMAFSYSHALN*
Ga0157284_1003866823300012893SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0157309_1020236823300012895SoilMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0157296_1001479923300012905SoilMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0137359_1079157023300012923Vadose Zone SoilMIRNLVRTCDMCHKEIPVGKYVQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYTRMGFSYSQALN*
Ga0126375_1184916723300012948Tropical Forest SoilLIRTCDMCHREIPSGEYVQRNSDRDGLDVLMVLIENEDRDLQLIELPDGSISLDTCFNCYSRMPFNHSSALN*
Ga0126369_1312066113300012971Tropical Forest SoilMIRNLVRTCDMCHKEIPAGKYVQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYSRMAFSYSQALN*
Ga0157371_1098558123300013102Corn RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN*
Ga0157378_1322301513300013297Miscanthus RhizosphereMCHHEIPEGKYFQRNRERTGLDVLMVLMENQGRELQLIEMPDGSISMDTCLDCYSRMGCNHSQALN*
Ga0157375_1207492913300013308Miscanthus RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNAPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN*
Ga0163163_1116190413300014325Switchgrass RhizosphereTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0157376_1082130523300014969Miscanthus RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNAPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0132258_1079064223300015371Arabidopsis RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRYGPEVLTILMENVDRDLRLIELPDGSISLDTCLSCYSRMPFNHSTALN*
Ga0132258_1185083223300015371Arabidopsis RhizosphereMCHKEIPAGKYVQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYTRMGFSYSQALN*
Ga0132256_10104365213300015372Arabidopsis RhizosphereMIKDLTRTCDMCRRPIPTGEYVQRNSDRNGPDILMVLMENEDRELKLIELPDGSISLDTCLS
Ga0132257_10285549013300015373Arabidopsis RhizosphereRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0132257_10331801023300015373Arabidopsis RhizosphereMIKDLTRTCDMCRRPIPTGEYVQRNSDRNGPDILMVLMENEDRELKLIELPDGSISLDTCLSCYSRMPFNHSLTVN*
Ga0132255_10190516623300015374Arabidopsis RhizosphereMIKDLTRTCDMCRRPIPTGEYVQRNSDRNGPDILMVLMENEDRELRLIELPDGSISLDTCLSCYSRMPFNHSLTVN*
Ga0132255_10442118323300015374Arabidopsis RhizosphereMIKNLVRTCDMCHREIPVGQYLQRNSERTGLDVLMVLMENQGRELQLIELPDGSIALDTCRECYSRMGFSHSHELN*
Ga0132255_10514326523300015374Arabidopsis RhizosphereLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN*
Ga0132255_10630152323300015374Arabidopsis RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN*
Ga0163161_1018154613300017792Switchgrass RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSN
Ga0190274_1019370223300018476SoilMCHRQIPAGQYMQRHSDRNAPDVLMILAENQDRDLQLIELPDGSISMDTCLTCYTRMPFTSSSGLN
Ga0173479_1002070023300019362SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN
Ga0173479_1048841423300019362SoilMIKDLTRTCDLCHRMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN
Ga0187893_1038159013300019487Microbial Mat On RocksMISNLIRTCDMCHKEIPAGKYLQRNAERFGPDVLMILAENQDRELKLIELPDGSISLDTCLNCYSRMAFNYSQALN
Ga0222624_154914513300021951Groundwater SedimentMCHREIPAGQYRERHSERNAPDVLMILAENQDRDLQLIELPDGSISMDTCLNCHTRMPFTSSSGFS
Ga0247791_105391913300023062SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN
Ga0209172_10001685373300025310Hot Spring SedimentMITNLVRTCDMCHKEIPAGKYVQRNADRFGLEVLMVLAENEGRELQLIELPDGTIALDTCVECCSRMGFQHSQALN
Ga0209640_1018052123300025324SoilMIKDLTRTCDLCHRTIPSGQYVQRNSERNGPDVLMVLVENLDRELRLIELPDGTVSLDTCLTCYERMPFNHSTAVN
Ga0207680_1032606323300025903Switchgrass RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMILIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN
Ga0207643_1075341813300025908Miscanthus RhizosphereLYNYLLYSSSKRDMIKDLTRTCDLCHRMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN
Ga0207649_1156035923300025920Corn RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSN
Ga0207650_1061090523300025925Switchgrass RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNAERNGPDVLMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPWNHSSAVN
Ga0207659_1000752723300025926Miscanthus RhizosphereMIKDLTRTCDMCHRQIPTGEYMQRNSERSGPDVLMVLIENEDRELRLIEMPDGTISLDTCLSCYSRIPFNHSTAVN
Ga0207659_1000942523300025926Miscanthus RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN
Ga0207644_1005725733300025931Switchgrass RhizosphereMIKDLTRTCDMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPFNHSNAVN
Ga0207644_1062533513300025931Switchgrass RhizosphereMIRNLVRTCDMCHKEIPAGKYIQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYSRMGFSYSQALN
Ga0207706_1173784813300025933Corn RhizosphereRTCDMCHRTIPSGEYVQRNSERNAPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN
Ga0207686_1037942423300025934Miscanthus RhizosphereMIKNLIRSCDMCHRQIPAGQYMQRHSDRNAPDVLMILAKNQDRDLQLIELPDGSISMDTCLTCYTRMPFTSSSGLN
Ga0207669_1135801813300025937Miscanthus RhizosphereMIKDLTRTCDMCHRQIPTGEYMQRNSERSGPDVLMVLIENEDRELRLIEMPDGTISLDTCLSCY
Ga0207711_1000107513300025941Switchgrass RhizosphereMCHRAIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGTISLDTCFSCY
Ga0207689_1102067523300025942Miscanthus RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRDGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYSRMPFNHSTALN
Ga0207658_1022234613300025986Switchgrass RhizosphereMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFS
Ga0207676_1104496913300026095Switchgrass RhizosphereMIKALTRTCDLCHRAIPSGEYFQRNSDRDGPDVLTILMENQDRELKLIEMPDGSISLDTCLSCYSRMPFNHST
Ga0207428_1052584613300027907Populus RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN
Ga0207428_1089698823300027907Populus RhizosphereMIKDLTRTCDLCHRMIPSGEYVQRNSHRNGPDVLMVLVENEDRDLRLIELPDGSISLDTCFSCYSRMPFNHSTALN
Ga0268265_1070813623300028380Switchgrass RhizosphereMIKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLKPSTAVN
Ga0268264_1112726713300028381Switchgrass RhizosphereKDLTRTCDLCHRTIPSGEYVQRNSERNGPDILMVLVENEDRDLRLIEMPDGSISLDTCFSCYSRIPLNPSTAVN
Ga0308189_1052706523300031058SoilMIKNLIRSCDMCHRQIPAGQYMQRHSDRNAPDVLMILAENQDRDLQLIEMPDGSISMDTCVACYTRMPFTSSSGLN
Ga0310888_1023280523300031538SoilMIKDLTRTCDMCHRTIPSGEYVQRNSERNGPDILMVLIENEDRDLRLIEMPDGSISLDTCFSCYSRMPLNPSTAVN
Ga0310813_1194113223300031716SoilMIRNLVRTCDMCHKEIPAGKYIQRNAERFGLDVLMVLAENQDRELQLIELPDGSIALDTCMDCYSRMGFSY
Ga0307468_10232681023300031740Hardwood Forest SoilMIKDLTRTCDICHRTIPSGEYVQRNSERNGPDVLMVLIENEDRDLRLIEMPDGTISLDTCFSCYSRMPLNHSTALN
Ga0310907_1066566013300031847SoilMIKDLTRTCDLCHRMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNH
Ga0310892_1009642623300031858SoilMIPSGEYVQRNSERNGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN
Ga0310903_1027166413300032000SoilMIKDLTRTCDLCHRMIPSGEYVQRNSERDGPDVLMVLVENEDRDLRLIELPDGSISLDTCWSCYTRMPFNHSTALN
Ga0315912_1013322223300032157SoilMIDNLVRTCDMCHRRIPHGQYIPRNLDRNDPDVIMVLLENLDRELKIIELPDGTVSLDTCMSCYSRMPIIHSTAVN
Ga0307471_10379262523300032180Hardwood Forest SoilKPIPTGEYVQRNSDRNGPDILMVLMENEDRELRLIELPDGTISLDTCLSCYSRMPFNHSLTVN
Ga0314782_140726_2_2083300034661SoilCDMCHCEIPAGEYLQRNSERFSPDVLMVLVQNEGRDLQLVELPDGTIALDTCRDCYTRMGFNHSHALN
Ga0314783_087848_441_6443300034662SoilDMCHCEIPAGEYLQRNSERFSPDVLMVLVQNEGRDLQLVELPDGTIALDTCRDCYTRMGFNHSHALN

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.