Metagenome / Metatranscriptome Family F065997

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065997
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	64 residues
Representative Sequence	KIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK
Number of Associated Samples	75
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.00 %
% of genes near scaffold ends (potentially truncated)	59.06 %
% of genes from short scaffolds (< 2000 bps)	55.12 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.992 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (26.772 % of family members)
Environment Ontology (ENVO)	Unclassified (27.559 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.031 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.96% β-sheet: 0.00% Coil/Unstructured: 56.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF03734	YkuD	11.02
PF09361	Phasin_2	3.94
PF00563	EAL	2.36
PF00072	Response_reg	1.57
PF13361	UvrD_C	1.57
PF00881	Nitroreductase	1.57
PF00817	IMS	0.79
PF07586	HXXSHH	0.79
PF08238	Sel1	0.79
PF06441	EHN	0.79
PF04392	ABC_sub_bind	0.79
PF01522	Polysacc_deac_1	0.79
PF07992	Pyr_redox_2	0.79
PF13460	NAD_binding_10	0.79
PF13406	SLT_2	0.79
PF00990	GGDEF	0.79
PF00691	OmpA	0.79
PF11604	CusF_Ec	0.79
PF05036	SPOR	0.79
PF02518	HATPase_c	0.79
PF00884	Sulfatase	0.79
PF00565	SNase	0.79
PF11116	DUF2624	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	11.02
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	11.02
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	2.36
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	2.36
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	2.36
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	2.36
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.79
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.79
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
All Organisms	root	All Organisms	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
cellular organisms	root	All Organisms → cellular organisms	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.15 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.57 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.36 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.15 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.79 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.15 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Afipia sp. P52-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	0.79 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.79 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1005126	Not Available	940	Open in IMG/M
3300000891\|JGI10214J12806_13766116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	561	Open in IMG/M
3300000955\|JGI1027J12803_101930256	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300000955\|JGI1027J12803_102385924	Not Available	573	Open in IMG/M
3300000956\|JGI10216J12902_125846027	Not Available	510	Open in IMG/M
3300003659\|JGI25404J52841_10143010	Not Available	507	Open in IMG/M
3300004114\|Ga0062593_101039860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	844	Open in IMG/M
3300004463\|Ga0063356_100308899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1967	Open in IMG/M
3300005289\|Ga0065704_10873690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300005294\|Ga0065705_10567207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300005332\|Ga0066388_100761441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1566	Open in IMG/M
3300005332\|Ga0066388_100969681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1418	Open in IMG/M
3300005332\|Ga0066388_105889851	Not Available	620	Open in IMG/M
3300005336\|Ga0070680_101983203	Not Available	504	Open in IMG/M
3300005459\|Ga0068867_100697945	Not Available	895	Open in IMG/M
3300005713\|Ga0066905_100107017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	1914	Open in IMG/M
3300005713\|Ga0066905_100335236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300005713\|Ga0066905_100343846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300005713\|Ga0066905_100962768	Not Available	750	Open in IMG/M
3300005713\|Ga0066905_101281372	Not Available	658	Open in IMG/M
3300005713\|Ga0066905_101442656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300005844\|Ga0068862_100632979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1030	Open in IMG/M
3300005937\|Ga0081455_10062297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3136	Open in IMG/M
3300005937\|Ga0081455_10111920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2168	Open in IMG/M
3300005937\|Ga0081455_10194008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1527	Open in IMG/M
3300006175\|Ga0070712_101615937	Not Available	567	Open in IMG/M
3300006844\|Ga0075428_100128378	All Organisms → cellular organisms → Bacteria → Proteobacteria	2758	Open in IMG/M
3300006844\|Ga0075428_100297856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1734	Open in IMG/M
3300006844\|Ga0075428_101028620	Not Available	871	Open in IMG/M
3300006844\|Ga0075428_101905139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300006846\|Ga0075430_100046006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3685	Open in IMG/M
3300006852\|Ga0075433_10913528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300006854\|Ga0075425_100147899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2690	Open in IMG/M
3300006854\|Ga0075425_100554694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1322	Open in IMG/M
3300006854\|Ga0075425_102724044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	545	Open in IMG/M
3300006871\|Ga0075434_100685547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1042	Open in IMG/M
3300006871\|Ga0075434_101061702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300006904\|Ga0075424_100594726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300009100\|Ga0075418_10332983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1620	Open in IMG/M
3300009147\|Ga0114129_10127369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3500	Open in IMG/M
3300009147\|Ga0114129_10281744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2221	Open in IMG/M
3300009147\|Ga0114129_11472572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	838	Open in IMG/M
3300009148\|Ga0105243_10892245	Not Available	884	Open in IMG/M
3300009148\|Ga0105243_11799468	Not Available	643	Open in IMG/M
3300009162\|Ga0075423_10121792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2735	Open in IMG/M
3300009162\|Ga0075423_10353915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1540	Open in IMG/M
3300009162\|Ga0075423_11996728	Not Available	628	Open in IMG/M
3300009168\|Ga0105104_10969704	Not Available	502	Open in IMG/M
3300010046\|Ga0126384_12025395	Not Available	551	Open in IMG/M
3300010047\|Ga0126382_10626638	Not Available	890	Open in IMG/M
3300010047\|Ga0126382_11286167	Not Available	660	Open in IMG/M
3300010047\|Ga0126382_12536212	Not Available	501	Open in IMG/M
3300010359\|Ga0126376_10102157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	2189	Open in IMG/M
3300010359\|Ga0126376_12351657	Not Available	579	Open in IMG/M
3300010361\|Ga0126378_12190485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300010362\|Ga0126377_12110486	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010398\|Ga0126383_11832402	Not Available	695	Open in IMG/M
3300010403\|Ga0134123_10269757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1492	Open in IMG/M
3300012958\|Ga0164299_11605289	Not Available	512	Open in IMG/M
3300013306\|Ga0163162_10097405	All Organisms → cellular organisms → Bacteria → Proteobacteria	3030	Open in IMG/M
3300015373\|Ga0132257_102976104	Not Available	617	Open in IMG/M
3300015373\|Ga0132257_103780302	Not Available	551	Open in IMG/M
3300018067\|Ga0184611_1102299	Not Available	996	Open in IMG/M
3300018072\|Ga0184635_10297138	Not Available	633	Open in IMG/M
3300018073\|Ga0184624_10443253	Not Available	571	Open in IMG/M
3300019869\|Ga0193705_1093004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300021510\|Ga0222621_1147660	Not Available	501	Open in IMG/M
3300022756\|Ga0222622_10255253	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300022756\|Ga0222622_10630921	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300026075\|Ga0207708_10150512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1831	Open in IMG/M
3300027909\|Ga0209382_10783947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300028755\|Ga0307316_10322931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300028793\|Ga0307299_10253436	Not Available	661	Open in IMG/M
3300028819\|Ga0307296_10081108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1729	Open in IMG/M
3300028819\|Ga0307296_10140839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300028884\|Ga0307308_10081833	Not Available	1531	Open in IMG/M
3300031421\|Ga0308194_10022667	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300031538\|Ga0310888_10787991	Not Available	588	Open in IMG/M
3300031720\|Ga0307469_12416256	Not Available	513	Open in IMG/M
3300032017\|Ga0310899_10705949	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.12%
Host-Associated	Host-Associated	44.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.03%
Plants	Host-Associated → Plants	44.88%
Aquatic	Environmental → Aquatic	7.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.60%
Sediment	Environmental → Aquatic → Sediment	4.72%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.50%
Loam	Environmental → Terrestrial → Soil → Loam	11.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.36%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.57%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	26.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.15%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10051263	2228664022	Soil	FIALWTERVNRFMARKVEPPTHYAQHVSKAKKPAKAAVTNKKKTKIAAAK
AF_2010_repII_A100DRAFT_10339071	3300000655	Forest Soil	ERVNRFMARKVEPPTHYVQHASKVEKSTKLAVTEKKTTKRAAADNKEKKTKVASR*
JGI11643J12802_104568081	3300000890	Soil	FIALWTERVNRFMARKVEPPTHYVQYTSKAKKPTKAAVTDKKRTKVAATEKKKT*
JGI11643J12802_115890704	3300000890	Soil	LWTERVNRFMARKVEPPTHYVQHVSKPRKLTQLAAKKKTKLAAAEKKK*
JGI10214J12806_137661162	3300000891	Soil	EALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
JGI1027J12803_1016991741	3300000955	Soil	VASIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
JGI1027J12803_1019302562	3300000955	Soil	PSDIKNKIKGGVDALTSGQFIALWTERVNRFIARKVEPPTHYVQHAAKAKKPTKAARTDKKRTKFAASN*
JGI1027J12803_1023859241	3300000955	Soil	PSDIKNKIKGGVDALTSGEFIALWTERVNRFMARRVEPPTQYVQQVSSKAKKLTQVVLTAKKKTKVAASK*
JGI10216J12902_1043275871	3300000956	Soil	ALWTERVNRFMARKVEAPTHYVQHASKAKKLTETAVTDKKKTKVAAAKKRRPR*
JGI10216J12902_1048750681	3300000956	Soil	TERVNRFMARKVEPPTYYVQPVSKAKKLTQLAANKKKTKVAAAEKKK*
JGI10216J12902_1258460272	3300000956	Soil	LWTERVNRFMARKVEPPTHYVQHTSKAKKLTQKKTKVAAVK*
JGI25404J52841_101430101	3300003659	Tabebuia Heterophylla Rhizosphere	KGEKWARKAIWGNVPSDIKNKIKGGLAALTSGQFIALWTERVNRFMARKVEPPTRYVQHASKAKKKTKVAATEKKMTNLEAR*
Ga0062593_1010398601	3300004114	Soil	ALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0062589_1002900832	3300004156	Soil	ERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0062590_1002907482	3300004157	Soil	WTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0063356_1003088991	3300004463	Arabidopsis Thaliana Rhizosphere	DIKNKIKGGLEALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0065704_108736901	3300005289	Switchgrass Rhizosphere	EKGEKWARKAIWGNVPWDLKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYAQHVSKAKKPAKAAVTNKKKTKIAAAK*
Ga0065705_105672071	3300005294	Switchgrass Rhizosphere	MGAQGHLGQRPVGPQKQDQGRTCGRQFIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
Ga0066388_1004028144	3300005332	Tropical Forest Soil	LTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0066388_1007614413	3300005332	Tropical Forest Soil	FKNTIKGGLEALTSGQFIALWTERVNRFMGRKVEPPTHYVRHASKAKKLTQKKTKVAAAK
Ga0066388_1009696811	3300005332	Tropical Forest Soil	IKGGVEALTSGQFIALWTERVNRFMTRKVEPPTEYVQHASKVKKKTKSAAIKKEKMTKLEAR*
Ga0066388_1056946131	3300005332	Tropical Forest Soil	KIKGGLEGLTSGQFIAIWTERVERFIARMVEPPTTYVERATKTKKAAAADKKEKKIKVATS*
Ga0066388_1058898512	3300005332	Tropical Forest Soil	KGGVEALTSGQFIALWTERVNRFMARNVEPPTHYVQHASKARKSSKLVVNDRKKTKVAAAEKRKTSAALQ*
Ga0066388_1088436502	3300005332	Tropical Forest Soil	FIALWTERVNRFMARKVEPPTQYVQQAKKAKKSTKVVGTERKKMKRAATDDKNTTVASW*
Ga0070680_1019832031	3300005336	Corn Rhizosphere	NVPADLKAKFKGGVEALTSGQFIKLWTERVNRFMARKVEAPTHYVQSASKAKKPAKSVTTNKKNTKSAAIKKEKPG*
Ga0070675_1018328221	3300005354	Miscanthus Rhizosphere	FVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVAATDKKKKKIKVASR*
Ga0068867_1006979451	3300005459	Miscanthus Rhizosphere	KIEGGVEALTSGQFIALWTERVDSFMARNVEPPADYLQHASNAKKPTQLAVTGNNKTKVAATDKKKKKTKVA*
Ga0066905_1001070174	3300005713	Tropical Forest Soil	MARKVEPPTHYVQHVSKPRKLTQLAANKKKTKVAAAEKKK*
Ga0066905_1003352361	3300005713	Tropical Forest Soil	KWARKAIWGNVPKDLKNTIKGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKMAATGKKKTKVAATAKKMTIEAR*
Ga0066905_1003438461	3300005713	Tropical Forest Soil	GVEALTSGQFIALWTERVNRFIARKVEPPTHYVQQVSKPRKLTQLTANKKKTKVAAVEKKK*
Ga0066905_1009627682	3300005713	Tropical Forest Soil	PWDLKKKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK*
Ga0066905_1012813721	3300005713	Tropical Forest Soil	GAKWARKAIWGNVPRDLKNTIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKPRKLTQLAANKKETKVAAAEKKK*
Ga0066905_1014426562	3300005713	Tropical Forest Soil	GGVEALTSGQFIALWTERVNSFMARQVEPPTQYVQQVSSKAKKLSQTVLAAKKKTKVAATR*
Ga0068862_1006329793	3300005844	Switchgrass Rhizosphere	NVPSDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0081455_100622972	3300005937	Tabebuia Heterophylla Rhizosphere	MARKAIWGNVPWDLKNKIKGGVNALTSGQFVALWTERVNRFMARKVEPPTHYVQHVRKAKKPAKGAVTDKKKTKIAAAK*
Ga0081455_101119201	3300005937	Tabebuia Heterophylla Rhizosphere	EKWARKAIWGNVPADLKNKFKGGVEALTSGQFIALWTERVNRFMGRKVEPPTHYVQHTSKAKKPTQLVFRAKKKTKVAAAEKNNHHPYVGQALP*
Ga0081455_101940081	3300005937	Tabebuia Heterophylla Rhizosphere	KGGVEALTSGQFVALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0070712_1016159371	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GGVEALTSGQFIALWTERVNRFIARKVEPPTEYVQHATKVKKATKFAASQKKKSKGAAIDKKKAPMG*
Ga0075428_1001283781	3300006844	Populus Rhizosphere	NVPADLKNKFKGGVNALTSGQFIALWTERVNRFMGRKVEPPTHYVQHTSKAKKPTQLVFRAKKKTQVAAAEKKNHHPYVGQAVP*
Ga0075428_1002978563	3300006844	Populus Rhizosphere	VDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0075428_1010286202	3300006844	Populus Rhizosphere	KIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075428_1019051392	3300006844	Populus Rhizosphere	KGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKTTKLEAR*
Ga0075421_1027236501	3300006845	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0075430_1000460061	3300006846	Populus Rhizosphere	VPSDLKNKIKGGLAALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
Ga0075431_1009953391	3300006847	Populus Rhizosphere	TSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0075431_1012866992	3300006847	Populus Rhizosphere	IALWTERVNRFMARKVEPPTQYVQHASKAKKSTKAAVTDKKRTKVAATK*
Ga0075433_109135282	3300006852	Populus Rhizosphere	KGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKMTKLEAR*
Ga0075425_1001478991	3300006854	Populus Rhizosphere	KGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075425_1005546942	3300006854	Populus Rhizosphere	KWARKAIWGNVPSDIRNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAKAKKPTKAATTDKKRTKVAASN*
Ga0075425_1027240441	3300006854	Populus Rhizosphere	AWARKAIWGNVPSDIKNKIKGGLEALTSGQFVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVAATDKKKKKIKVASR*
Ga0075434_1003721872	3300006871	Populus Rhizosphere	LTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075434_1003751871	3300006871	Populus Rhizosphere	VEALTSGQFIALWTERVNRFMARKVEPPTYYVQPVSKAKKLTQLAANKKKTKVAAAEKKK
Ga0075434_1006855472	3300006871	Populus Rhizosphere	KGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKAKVAATGKKKTKVASR*
Ga0075434_1010617022	3300006871	Populus Rhizosphere	NVPADLKNKFKGGVNALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKTTKLEAR*
Ga0075434_1024158382	3300006871	Populus Rhizosphere	VNRFMARKVEPPTHYVQHTSKAKKRTQLVFRAKKKTQVAAAEKKN*
Ga0075424_1002786741	3300006904	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT
Ga0075424_1005693401	3300006904	Populus Rhizosphere	LTSGQFIALWTERVNRFMARKVEPPTHYVQHATKAKKPTKAAVTDKKRTKVAAAK*
Ga0075424_1005947262	3300006904	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKAKVAATGKKKTKVASR*
Ga0075424_1027558751	3300006904	Populus Rhizosphere	EALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0075418_103329832	3300009100	Populus Rhizosphere	VPWDLKNKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075418_123263511	3300009100	Populus Rhizosphere	TSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKRTQLVFRAKKKTQVAAAEKKN*
Ga0075418_130748311	3300009100	Populus Rhizosphere	SGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0114129_101273691	3300009147	Populus Rhizosphere	NKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0114129_102337724	3300009147	Populus Rhizosphere	NRFMARKVEPPTHYVQHTSKAKKRTHLVFRAKKKTQVAAAEKKN*
Ga0114129_102817444	3300009147	Populus Rhizosphere	GVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKTKVAVAEKMKT*
Ga0114129_113561981	3300009147	Populus Rhizosphere	TERVNRFMARKVEPPTHYVQHVSKPRKLTQLAANKKKTKVAAAEKKK*
Ga0114129_114725722	3300009147	Populus Rhizosphere	MGAQGDLGQRPVDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0114129_119778792	3300009147	Populus Rhizosphere	GQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0105243_108922452	3300009148	Miscanthus Rhizosphere	SDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0105243_117994681	3300009148	Miscanthus Rhizosphere	AWARKAIWGNVPSDIKNKIKGGLEALTSGQFVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVTATDKKKKKIKVASR*
Ga0075423_101217921	3300009162	Populus Rhizosphere	KNKFKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVHHTSKAKKPTQLVFRAKKKTQVAAAEKKNHHPYVGQAVP*
Ga0075423_103539151	3300009162	Populus Rhizosphere	GQERGEAWARKAIWGNVPWDLKNKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075423_119967281	3300009162	Populus Rhizosphere	DLKNTIKGGLEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKSTKAAVTDKKRTKVAATK*
Ga0105104_102560321	3300009168	Freshwater Sediment	ALWTERVNRFMARRVEPPTHYVQHASKTKKLTQLAAKKKTTIAATK*
Ga0105104_105226162	3300009168	Freshwater Sediment	ALWTERVNRFMARRVEPPTHYVQHASKTKKLTQLTAKKKTKIAATK*
Ga0105104_109697042	3300009168	Freshwater Sediment	LKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKRTKVAATEKKKT*
Ga0126374_107194602	3300009792	Tropical Forest Soil	LWTERVNRFMTRRVEPPTHYVQHAAKAKKPTKAAATDKKRTKVAASN*
Ga0126374_115418681	3300009792	Tropical Forest Soil	TSGQFIALWTERVNRFMARKVEPPTHYVQHTSKANKATKAAATDKKRTKVAATK*
Ga0126384_120253951	3300010046	Tropical Forest Soil	IKNKIKGGVNALTSGQFIALWAERVERLMARKVEPPTHYVQHAAKAKKPTKAARSDKKRTKVAASN*
Ga0126382_106266383	3300010047	Tropical Forest Soil	ARKAIWGNVPSDLKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSRAKKPTKAAVTAKKKTKVAATN*
Ga0126382_112861671	3300010047	Tropical Forest Soil	VNALTSGQFIALWTERVSRFMGRKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0126382_125362121	3300010047	Tropical Forest Soil	IWGNVPWDLKKTIKGGVEALTSGQFIALWTERVNRFIARKVEPPTHYVQQVSKPRKLTQLAAKKKTKVAAAEKKKTEAALR*
Ga0126376_101021574	3300010359	Tropical Forest Soil	NVPADLKNKIKGGVETLTSGQFIALWAERVERFIARLVEPPTDYVERASKTKKPTKTAATDTQKTKGAAIDKKKTKVARS*
Ga0126376_123516571	3300010359	Tropical Forest Soil	IWGNVPSDIKNKIKGGVNALTSGQFIALWAERVERLMARKVEPPTHYVQHAAKAKKPTKAARSDKKRTKVAASN*
Ga0126378_121904852	3300010361	Tropical Forest Soil	EKWARKAIWGNVPSDLKNKIKGGVEALTSGQFIALWTERVNSFMARQVEPPTQYVQQVSSKAKKLTQTVLAAKKKTKVAATR*
Ga0126377_121104862	3300010362	Tropical Forest Soil	WGNVPWDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTYYVQHASKAKKPTQKKTQVAAAK*
Ga0126383_118324021	3300010398	Tropical Forest Soil	KIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK*
Ga0134123_102697571	3300010403	Terrestrial Soil	KNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0138505_1000446771	3300010999	Soil	MARKVEPPAHYVQHASKAKRSTPLAATGKKKTGVAATDKKKKKTKVASR*
Ga0157346_10029961	3300012480	Arabidopsis Rhizosphere	SGQFLALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0157335_10019203	3300012492	Arabidopsis Rhizosphere	LTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNTKKKTKIAALAK*
Ga0157315_10456061	3300012508	Arabidopsis Rhizosphere	SGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNTKKKTKIAALAK*
Ga0164303_104893421	3300012957	Soil	SGQFLALWTERVYRFMRRKVEQPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0164303_111173192	3300012957	Soil	ERVNRFMARKVEPPTYYVQRVNKAHKLPQLTLTDKKKTKIDASK*
Ga0164299_116052891	3300012958	Soil	WGNVPSDIKNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAQAKKPTKAATTDKKRTKVAASN*
Ga0126369_101333255	3300012971	Tropical Forest Soil	ALWTERVNRFMARQVEPPTQYVQQVSSKAKKLSQTVLAAKKKTKVAATR*
Ga0157373_103837613	3300013100	Corn Rhizosphere	ERVNRFMARKVEAPTRYVQPASKAKKQTKSVATGKQNTKSAEIKGDDQVKTQ*
Ga0157378_124600811	3300013297	Miscanthus Rhizosphere	LAIWTERVNRFMARMVEPPTDYVERASKANKPMKAAVIDKKQKTKVAAAEKKPRYRRG*
Ga0163162_100974057	3300013306	Switchgrass Rhizosphere	ALWTERVDSFMARNVEPPADYLQHASNAKKPTQLAVTGNNKTKVAATDKKKKKTKVA*
Ga0157377_111655092	3300014745	Miscanthus Rhizosphere	IALWTERVNRFIARKVEPPTEYVQHATKVKKATKFAASHKKKSKGAAIDKKKAPMG*
Ga0132257_1029761041	3300015373	Arabidopsis Rhizosphere	RKAIWGNVPWDIKNKIKGGVDALTSGEFIALWTERVNRFMARKVEPPTYYVQRVNKAHKLPQLTLTAKKKTKIAASK*
Ga0132257_1037803021	3300015373	Arabidopsis Rhizosphere	IKNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAKAKKPTKAATSDKKRTKVAASN*
Ga0132255_1005279502	3300015374	Arabidopsis Rhizosphere	FMARKVEAPEHYVLPASKAKKSTLLAATKNKTKVAAPDKRKKKFKVASH*
Ga0132255_1022126552	3300015374	Arabidopsis Rhizosphere	WTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0184611_11022992	3300018067	Groundwater Sediment	GGLEALTSGQFIALWTERVNRFMAREVEPPAHYVQHASKAKTQLAVTGKKKANVATTDKKKKKTKVASR
Ga0184635_102971381	3300018072	Groundwater Sediment	KAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMAREVEPPAHYVQHASKAKTQLAVTGKKKANVATTDKKKKKTKVASQ
Ga0184624_104432531	3300018073	Groundwater Sediment	RKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0193705_10930042	3300019869	Soil	KGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0222621_11476601	3300021510	Groundwater Sediment	GGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIA
Ga0222622_102552531	3300022756	Groundwater Sediment	KGQKWARKAIWGNVPSDLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIAK
Ga0222622_106309212	3300022756	Groundwater Sediment	VVENKLKGGLEALTSGEFIALWTERVNRFMARKVEPPTHYVQHATKTQKLTQVALTPKKKTKVAAIAK
Ga0207709_110744891	3300025935	Miscanthus Rhizosphere	MLTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0207708_101505121	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SDIKNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0209382_107839472	3300027909	Populus Rhizosphere	MGAQGDLGQRPVDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK
Ga0307316_103229311	3300028755	Soil	ARKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0307282_100720601	3300028784	Soil	FMARKVEPPTHYVQHASKAKKPTQLVLTAKKKTKVAVTEKKKTKVASR
Ga0307299_102534361	3300028793	Soil	KGQAWARKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVDRFMARKVEPPAHYVQHASEAKKLTQLALTAKKKAKVAATEKKKTKIASR
Ga0307287_102387522	3300028796	Soil	EALTSGQFIALWTERVDRFMARNLEPPTHYKQHASKAKKLQLVLTAKKKTKVAATK
Ga0307296_100811081	3300028819	Soil	ARKAIWGNVPSDLKNKIEGGVEALTSGQFIALWTERVDRFMARKVEPPAHYVQHASEAKKLTQLALTAKKKAKVAATEKKKTKIASR
Ga0307296_101408391	3300028819	Soil	KNKIKGGLDALTSGQFVALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0307296_104902441	3300028819	Soil	SGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKPTKLSATGKKKTKGAAIKNEKMTKLEAR
Ga0307312_105894922	3300028828	Soil	MARRVEPPTHYVQHASKAKKPTKAAVTDKKTKVAAAEKKKT
Ga0307308_100818331	3300028884	Soil	ARKAIWGNVPSDLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPTHYVQHATKTQKLTQVALTPKKKTKVAAIAK
Ga0308194_100226672	3300031421	Soil	QGHLGQRLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIAK
Ga0310888_107879911	3300031538	Soil	VPWDIKNKIKGGVEALTSGEFIALWTERVNRFMARKVEPPAYYVQRVNKAHKLPQLTLTAKKKTKIAASK
Ga0307469_124162561	3300031720	Hardwood Forest Soil	KWARKAIWGNVPSDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0310899_107059492	3300032017	Soil	IKNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQGASKAKKSIKAAVNAKKKTKIAALAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065997

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences