Metagenome Family F066035

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066035
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	70 residues
Representative Sequence	VKPEFVLVAVVTCLAMMSVTPALTAPRQIEDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKRKYRKY
Number of Associated Samples	62
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.02 %
% of genes near scaffold ends (potentially truncated)	51.97 %
% of genes from short scaffolds (< 2000 bps)	92.91 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.843 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.559 % of family members)
Environment Ontology (ENVO)	Unclassified (48.819 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.165 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.00% β-sheet: 0.00% Coil/Unstructured: 52.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF06172	Cupin_5	1.57
PF11752	DUF3309	1.57
PF07043	DUF1328	0.79
PF04199	Cyclase	0.79
PF00300	His_Phos_1	0.79
PF01391	Collagen	0.79
PF01068	DNA_ligase_A_M	0.79
PF13560	HTH_31	0.79
PF10003	DUF2244	0.79
PF05036	SPOR	0.79
PF07681	DoxX	0.79
PF02322	Cyt_bd_oxida_II	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3542	Predicted sugar epimerase, cupin superfamily	General function prediction only [R]	1.57
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.79
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.79
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.79
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.79
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
All Organisms	root	All Organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
cellular organisms	root	All Organisms → cellular organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.22 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.05 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	11.02 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	9.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.57 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	9.45 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2.36 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.57 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.57 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.57 %
Methyloligella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	0.79 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	9.45 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.57 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.57 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	0.79 %
Hyphomicrobium zavarzinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	0.79 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.79 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	0.79 %
Candidatus Jettenia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100274422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2328	Open in IMG/M
3300005332\|Ga0066388_102184563	Not Available	998	Open in IMG/M
3300005332\|Ga0066388_102548777	Not Available	930	Open in IMG/M
3300005332\|Ga0066388_102986052	Not Available	864	Open in IMG/M
3300005332\|Ga0066388_104001307	Not Available	752	Open in IMG/M
3300005332\|Ga0066388_106023428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300005332\|Ga0066388_106742864	Not Available	578	Open in IMG/M
3300005332\|Ga0066388_107653619	Not Available	541	Open in IMG/M
3300005332\|Ga0066388_108116550	Not Available	524	Open in IMG/M
3300005332\|Ga0066388_108232843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300005435\|Ga0070714_101613398	Not Available	634	Open in IMG/M
3300005435\|Ga0070714_101937819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300005713\|Ga0066905_101472696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300005764\|Ga0066903_100926114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1581	Open in IMG/M
3300005764\|Ga0066903_102299037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1041	Open in IMG/M
3300005764\|Ga0066903_103259952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300005764\|Ga0066903_104194089	Not Available	771	Open in IMG/M
3300005764\|Ga0066903_104308328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	761	Open in IMG/M
3300005764\|Ga0066903_104893247	Not Available	711	Open in IMG/M
3300005764\|Ga0066903_106016035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	635	Open in IMG/M
3300005764\|Ga0066903_106378149	Not Available	615	Open in IMG/M
3300005764\|Ga0066903_106434082	Not Available	612	Open in IMG/M
3300005764\|Ga0066903_106573032	Not Available	605	Open in IMG/M
3300005764\|Ga0066903_107551760	Not Available	561	Open in IMG/M
3300005764\|Ga0066903_107775020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300005764\|Ga0066903_108420445	Not Available	526	Open in IMG/M
3300005764\|Ga0066903_108718076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300005764\|Ga0066903_108943896	Not Available	507	Open in IMG/M
3300005764\|Ga0066903_109004340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	505	Open in IMG/M
3300006173\|Ga0070716_101718708	Not Available	518	Open in IMG/M
3300006175\|Ga0070712_100418811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1110	Open in IMG/M
3300006175\|Ga0070712_100638593	Not Available	904	Open in IMG/M
3300006804\|Ga0079221_10617997	Not Available	735	Open in IMG/M
3300009156\|Ga0111538_11794667	Not Available	772	Open in IMG/M
3300010043\|Ga0126380_11760496	Not Available	559	Open in IMG/M
3300010046\|Ga0126384_10278320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1366	Open in IMG/M
3300010047\|Ga0126382_10487559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	987	Open in IMG/M
3300010048\|Ga0126373_11632328	Not Available	709	Open in IMG/M
3300010358\|Ga0126370_11464889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	647	Open in IMG/M
3300010358\|Ga0126370_12242019	Not Available	539	Open in IMG/M
3300010359\|Ga0126376_10172114	All Organisms → cellular organisms → Bacteria	1762	Open in IMG/M
3300010359\|Ga0126376_11364051	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300010359\|Ga0126376_12648018	Not Available	550	Open in IMG/M
3300010360\|Ga0126372_10086883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2298	Open in IMG/M
3300010360\|Ga0126372_10490878	Not Available	1150	Open in IMG/M
3300010361\|Ga0126378_10126048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2573	Open in IMG/M
3300010362\|Ga0126377_10270554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1663	Open in IMG/M
3300010362\|Ga0126377_10978487	Not Available	912	Open in IMG/M
3300010362\|Ga0126377_11471827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	754	Open in IMG/M
3300010366\|Ga0126379_10501333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1285	Open in IMG/M
3300010366\|Ga0126379_10598773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1187	Open in IMG/M
3300010366\|Ga0126379_12025959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	678	Open in IMG/M
3300010376\|Ga0126381_100738224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1410	Open in IMG/M
3300010376\|Ga0126381_104094134	Not Available	566	Open in IMG/M
3300010398\|Ga0126383_10159436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium zavarzinii	2116	Open in IMG/M
3300010398\|Ga0126383_10961355	Not Available	942	Open in IMG/M
3300010868\|Ga0124844_1062471	Not Available	1348	Open in IMG/M
3300012948\|Ga0126375_11099505	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300012971\|Ga0126369_10476009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1303	Open in IMG/M
3300012971\|Ga0126369_11599292	Not Available	741	Open in IMG/M
3300012971\|Ga0126369_12792867	Not Available	571	Open in IMG/M
3300012971\|Ga0126369_12844703	Not Available	567	Open in IMG/M
3300012971\|Ga0126369_13165196	Not Available	539	Open in IMG/M
3300015372\|Ga0132256_103521263	Not Available	526	Open in IMG/M
3300015374\|Ga0132255_105327558	Not Available	544	Open in IMG/M
3300016270\|Ga0182036_11069663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	667	Open in IMG/M
3300016270\|Ga0182036_11161200	Not Available	641	Open in IMG/M
3300016294\|Ga0182041_11261056	Not Available	675	Open in IMG/M
3300016319\|Ga0182033_10286831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1353	Open in IMG/M
3300016319\|Ga0182033_10409137	Not Available	1148	Open in IMG/M
3300016341\|Ga0182035_11727700	Not Available	566	Open in IMG/M
3300016341\|Ga0182035_12194573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	500	Open in IMG/M
3300016357\|Ga0182032_11527686	Not Available	580	Open in IMG/M
3300016371\|Ga0182034_10285963	All Organisms → cellular organisms → Bacteria → Proteobacteria	1316	Open in IMG/M
3300016371\|Ga0182034_11280478	Not Available	639	Open in IMG/M
3300016371\|Ga0182034_11472539	Not Available	596	Open in IMG/M
3300016404\|Ga0182037_10639804	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300016404\|Ga0182037_11286996	Not Available	644	Open in IMG/M
3300016404\|Ga0182037_12114788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	506	Open in IMG/M
3300016422\|Ga0182039_10040757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	3081	Open in IMG/M
3300016422\|Ga0182039_10719734	Not Available	881	Open in IMG/M
3300016422\|Ga0182039_11622359	Not Available	591	Open in IMG/M
3300016445\|Ga0182038_10606519	Not Available	945	Open in IMG/M
3300016445\|Ga0182038_11384917	Not Available	630	Open in IMG/M
3300016445\|Ga0182038_11425085	Not Available	621	Open in IMG/M
3300021560\|Ga0126371_10147247	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	2412	Open in IMG/M
3300021560\|Ga0126371_10288926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1764	Open in IMG/M
3300021560\|Ga0126371_11369682	Not Available	839	Open in IMG/M
3300021560\|Ga0126371_13667707	Not Available	518	Open in IMG/M
3300025915\|Ga0207693_10220124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1492	Open in IMG/M
3300027680\|Ga0207826_1098745	Not Available	803	Open in IMG/M
3300027703\|Ga0207862_1125298	Not Available	771	Open in IMG/M
3300031543\|Ga0318516_10453016	Not Available	738	Open in IMG/M
3300031546\|Ga0318538_10514531	Not Available	649	Open in IMG/M
3300031573\|Ga0310915_10571808	Not Available	801	Open in IMG/M
3300031573\|Ga0310915_10624356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	763	Open in IMG/M
3300031681\|Ga0318572_10607996	Not Available	651	Open in IMG/M
3300031719\|Ga0306917_10728211	Not Available	779	Open in IMG/M
3300031744\|Ga0306918_10380411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1098	Open in IMG/M
3300031744\|Ga0306918_10936539	Not Available	674	Open in IMG/M
3300031782\|Ga0318552_10726190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	507	Open in IMG/M
3300031797\|Ga0318550_10638790	Not Available	511	Open in IMG/M
3300031833\|Ga0310917_11158640	Not Available	515	Open in IMG/M
3300031879\|Ga0306919_10328600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1165	Open in IMG/M
3300031879\|Ga0306919_10799742	Not Available	725	Open in IMG/M
3300031879\|Ga0306919_10949595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	658	Open in IMG/M
3300031890\|Ga0306925_10952909	Not Available	879	Open in IMG/M
3300031910\|Ga0306923_10134887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	2810	Open in IMG/M
3300031910\|Ga0306923_10332151	Not Available	1735	Open in IMG/M
3300031941\|Ga0310912_10405962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1061	Open in IMG/M
3300031942\|Ga0310916_10262206	Not Available	1458	Open in IMG/M
3300031942\|Ga0310916_10550399	Not Available	982	Open in IMG/M
3300031942\|Ga0310916_11132289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	649	Open in IMG/M
3300031945\|Ga0310913_11276721	Not Available	510	Open in IMG/M
3300031946\|Ga0310910_10245178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1400	Open in IMG/M
3300031947\|Ga0310909_10629410	Not Available	895	Open in IMG/M
3300031947\|Ga0310909_11673572	Not Available	503	Open in IMG/M
3300031954\|Ga0306926_11905803	Not Available	671	Open in IMG/M
3300032001\|Ga0306922_12211215	Not Available	530	Open in IMG/M
3300032059\|Ga0318533_10401985	Not Available	1000	Open in IMG/M
3300032059\|Ga0318533_10764662	Not Available	709	Open in IMG/M
3300032063\|Ga0318504_10248739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	837	Open in IMG/M
3300032076\|Ga0306924_10163742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2550	Open in IMG/M
3300032076\|Ga0306924_10963001	Not Available	939	Open in IMG/M
3300032261\|Ga0306920_100358876	Not Available	2168	Open in IMG/M
3300032261\|Ga0306920_103247551	Not Available	607	Open in IMG/M
3300033289\|Ga0310914_10689826	Not Available	917	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.64%
Host-Associated	Host-Associated	2.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.64%
Plants	Host-Associated → Plants	2.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.29%
Loam	Environmental → Terrestrial → Soil → Loam	28.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	23.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1002744223	3300005332	Tropical Forest Soil	VKPECVLVAVVTCLAVMSVAPPALTAPRQIEDFCFEQALHVWTTFWHRGDYEA
Ga0066388_1021845631	3300005332	Tropical Forest Soil	MKPEIVLVAVIICLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFM
Ga0066388_1025487771	3300005332	Tropical Forest Soil	MKFVLVTCLAMISATPALTASRQIQDYCSKQALRANATFRQRGDREAFMATCIANHTPTPTQKRKYRKY*
Ga0066388_1029860522	3300005332	Tropical Forest Soil	VKPEFVLVAVVTCLAMMSVTPALTAPRQIEDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0066388_1040013071	3300005332	Tropical Forest Soil	VKPEFALVAVVICLAVMSATPALTASRQIQDFCSKQALHANAAFRYRGDYEAFMANCI*
Ga0066388_1060234282	3300005332	Tropical Forest Soil	VKAEIVLVAVIIRLAMMSVTTPALTAPRQIQDLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0066388_1067428641	3300005332	Tropical Forest Soil	VKSEFVRAAVVTFLVMMSATPALTASRQIQDYCSKQAIRANATFRQRGDREAFMANCIANLTPTPTGKRKYRKY*
Ga0066388_1076536191	3300005332	Tropical Forest Soil	VKPQCLLVAMVTILAMVSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCI
Ga0066388_1081165501	3300005332	Tropical Forest Soil	VKPECLLVAVVTCLAIMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANC
Ga0066388_1082328431	3300005332	Tropical Forest Soil	VKPEFALVAVVICLAVISATPALAASRQIQDYCSNQAIRANATFWHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0070714_1016133982	3300005435	Agricultural Soil	AGTQSAQIALGGEDVKPECVVAVVTCLAMMSVTPALAAPRQIEDFCSEQALHLPHTFSYRGDYEAFMANCIANLTPTPTGKRKYRKH*
Ga0070714_1019378192	3300005435	Agricultural Soil	VKPECLLAAVVTILPVISVAPALAAPRQIQDLCSEQARHVTFWHRGDYEAFMANCIAN
Ga0066905_1014726962	3300005713	Tropical Forest Soil	VTCLAMMSVTPALAAPRQIEDFCFERSRHVTFWHRGDYEAFMANCIANHTPTPTKKRKYRKY*
Ga0066903_1009261141	3300005764	Tropical Forest Soil	MAVDNGARARGGEDVKPEFALVAVVICLALMSATPALTASRQIQDYCSKQAIPANATFWHRGDPEAFMANCIANHTPTPTMPMPIKKSTHRKY*
Ga0066903_1022990372	3300005764	Tropical Forest Soil	MKPEFVLVTVVMCLAMISVTPALTAPRHIQDLCYEKARHVTFWHRGDREAFMANCIANHTPTPTEKRKYRKY*
Ga0066903_1032599521	3300005764	Tropical Forest Soil	VKPESLVAVVTCLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFM
Ga0066903_1041940891	3300005764	Tropical Forest Soil	MTEVKDVKPEFVRAAVVTFFVMISATPAVTASRQIQDFCSKQALRANATFRHREDSAAFMANCIANHTPTPTQKRKYRK*
Ga0066903_1043083283	3300005764	Tropical Forest Soil	VKPEFVRAAVVTFLVMISATPALTASRQIQDFCSNQALHANVTFSYRGDYEAFMANCIANHTPTPTMPMP
Ga0066903_1048932472	3300005764	Tropical Forest Soil	RSKSLIALGGEDVKPECLLVAVVTCLAIMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKHKYRKY*
Ga0066903_1060160351	3300005764	Tropical Forest Soil	MRERANVSTKCLLVAVVAMMSVTPALAASRQIQDYCSKRAIRANATFWHRGDREAFMANCIAN
Ga0066903_1063781491	3300005764	Tropical Forest Soil	VKLEFVLVASITCLAMISATPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIAN
Ga0066903_1064340822	3300005764	Tropical Forest Soil	VKSEFVLLTVVTCLAVISVTPALTAPRQIEDVCSEQARHVTFWHRGDYEAFMATCIANHTPTPTGKRKYRKY*
Ga0066903_1065730321	3300005764	Tropical Forest Soil	VKPECLLMAMVTILAMVSVTPALAAPRQIEDFCSKQARHVTFSYRGDYEAFMANCIANHTPAPTGKRQYRKY*
Ga0066903_1075517601	3300005764	Tropical Forest Soil	MVSTSTGRHHGVAGTQIVQIDLGGEDVKPEFVLVAMVICLARMSVTPALTAPRHIEDLCYENARHHTFWHRGDREAFMANCIANHTPTPTEKRKYRKY*
Ga0066903_1077750201	3300005764	Tropical Forest Soil	VKPECLLVAVLAMMSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFM
Ga0066903_1084204453	3300005764	Tropical Forest Soil	MSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTGKRKSRP*
Ga0066903_1087180762	3300005764	Tropical Forest Soil	YLAAGEDVKPEFVLVAVVTYLAMMSATPALTASRQIQDFCSKQALNANATFRHRGDYEAFMANCIANLTPTPTQKRKHRKY*
Ga0066903_1089438961	3300005764	Tropical Forest Soil	VKPECLLVAVVTCLAIMSVTPALAAPRHIEDSCSQQALHTTFWHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0066903_1090043401	3300005764	Tropical Forest Soil	AGTQIAQIDLGGEDVKPEFALVAVVICLAVMSATPALAAPRQIEDFCFEQSRHVTFWHRGDYEAFMANCIANLTPTPTGKRKYRKY*
Ga0070716_1017187081	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MMSVTPALAAPRQIEDFCFEQARHVTFWHRGDYEAFMANCIANHTPTPAKKRKYRKY*
Ga0070712_1004188113	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VKPECVLVAVVTCLAMMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMA
Ga0070712_1006385931	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VKPECVLVAAVTCLVMMSVTPALTAPRQIQDFCSKQALHAFSTFWHRGDYEAFMANCIANLTPTPTGKRKYRKY*
Ga0079221_106179972	3300006804	Agricultural Soil	VKTEYVLVVTCLAMMSVTPAFAAPRQIENFCVNQALHVTFWHRGEDEAFMANCIANLTPTPTGKRKYRKY*
Ga0111538_117946671	3300009156	Populus Rhizosphere	LLVAMVTILAMVSVTPALAASRQIEDFCSKQAQHVTFWHRGDYEAFMANSIANHTPTPTGKRQYPKY*
Ga0126380_117604962	3300010043	Tropical Forest Soil	PALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTKKRKYQKY*
Ga0126384_102783202	3300010046	Tropical Forest Soil	VKTECLLVALVTCLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0126382_104875591	3300010047	Tropical Forest Soil	VVFAGTQIAQIALGGKDVKPEFVLVAVVTCLAMMSVTPALSASRQIQDYCSKQALHANATFWHRGDPEAFMANCIANHTPTPTKKRKYRNY*
Ga0126373_116323281	3300010048	Tropical Forest Soil	ALVAVLICLVVMSATPVLAASRQIQDYCSNQAIRANATFHQRGDREASPTPTTPTPTKKRKYRNY*
Ga0126370_114648891	3300010358	Tropical Forest Soil	AIDVPCSGGKCALVAVVICLAMMSVTLTLTAPRQIEDFCFERSRHVTFSYRGDYEAFMANCIANHTPTPTKKRKYRKY*
Ga0126370_122420191	3300010358	Tropical Forest Soil	VKPEFVLVAVVALISATPALTAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHTPTPTKKRKYQKY*
Ga0126376_101721141	3300010359	Tropical Forest Soil	VKPEFVLVAVVTCLAMMSVTPALSASRQIQDYCSKQAIRANATFWHRGDYEAFMATCIANLTPTPTGKRKYHKY*
Ga0126376_113640511	3300010359	Tropical Forest Soil	SSTSMRSLRVSAMGFLKPEFVLAAVVTFLVMMSATPALTASRQIQDYCSKQALRANATFRQRGDYEAFMATCIANLTPTPTGKRKARP*
Ga0126376_126480181	3300010359	Tropical Forest Soil	VKSEFVLLTVVTCLAVISVTPALTAPRQIEDVCSEQARHVTFWHRGDYEAFMATCIANHMPTPTKKREYRKY*
Ga0126372_100868832	3300010360	Tropical Forest Soil	MMSVTPALAAPRQIEDFCFEQSRHVTFWHRGDYEAFMANCIANHTPTPTKKRKYRKY*
Ga0126372_104908782	3300010360	Tropical Forest Soil	MALRALNLGGEDVKPEFVLVGVVTFLVMIGATPALAASRQIQDYCSKQAIRANATFRQRGDREAFMANCIANLTPTPTGKRKARP*
Ga0126378_101260485	3300010361	Tropical Forest Soil	VKPEFVLVAVVTCLAMMSVTPALSASRQIQDYCSKQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKYRKY*
Ga0126377_102705544	3300010362	Tropical Forest Soil	VKPEFALVAVVICLVVMSATPALAASRQIQDYCSKQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKARP*
Ga0126377_109784871	3300010362	Tropical Forest Soil	CLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHTPTPTGKRKYRKY
Ga0126377_114718271	3300010362	Tropical Forest Soil	VGLSALKNAHIALRGANVRPKSLLVAMITRLATMSVTPALAAPRQVEDFCFEQSRHVTLYGRGAYEAFMANCIANLTPTPTGKRKYRKY*
Ga0126379_105013332	3300010366	Tropical Forest Soil	GLHDRDQAHAERRNELKLGGEDVKPECLLVAVVTCLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0126379_105987731	3300010366	Tropical Forest Soil	MKPEIVLVAVIICLAMMSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0126379_120259591	3300010366	Tropical Forest Soil	VRAKCLLVAIVAMMSASPALTASRQIQDYCSNQAIRANATFHQRGDREAFMANCIANLTPTPTTPTPTKKRKYRKY*
Ga0126381_1007382244	3300010376	Tropical Forest Soil	VKPEFVLVAVVTCLAMMSVTPALSASRQIQDYCSKQAIRANATFWHRGDREAFMANCIANLTPTPTGKRK
Ga0126381_1040941341	3300010376	Tropical Forest Soil	MGFFFMKPECLLVAVLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0126383_101594361	3300010398	Tropical Forest Soil	QIEQIALGGEDVKPEFVLAAVVTFLVTISATPALAASRQIQDYCSKQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKYRKLRGAA*
Ga0126383_109613552	3300010398	Tropical Forest Soil	VKPECLLVAVLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMATCIANHTPTPTGKRKYRKY*
Ga0124844_10624713	3300010868	Tropical Forest Soil	VKPEFALVAVVICLAVISATPALAASRQIQDYCSNQAIRANATFWHRGDREAFMANCIAN
Ga0126375_110995052	3300012948	Tropical Forest Soil	VKLEFVLVAVVTFLVMIGATPALAASRQIQDYCSKQAIRANATFWHRGDREAFMTNCIANLTPTPTEKRKYRKY*
Ga0126369_104760092	3300012971	Tropical Forest Soil	MKPECLLVAVVTCLAMMSVTTALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHTPSPTGKRKYRKY*
Ga0126369_115992922	3300012971	Tropical Forest Soil	VKPECLLVAVLAMMSVTPALAAPRQIQDSCSKQALHQTFYHRGDYEAFMANCIANHT
Ga0126369_127928672	3300012971	Tropical Forest Soil	MKPEFVLVTVVMCLAMISVTPALTAPRHIQDLCYEKARHVTFWHRGDRE
Ga0126369_128447032	3300012971	Tropical Forest Soil	VKPECLLMAMVTILAMVSVTPALAASRQIEDFCSKQARHVTFSYRGDREAFMANCIANHTPAPTGKRQYRKY*
Ga0126369_131651961	3300012971	Tropical Forest Soil	TPALAAPRQIEDFCFEQSRHVTFWHRGDYEAFMANCIANLTPTPTQKRKHRKY*
Ga0132256_1035212631	3300015372	Arabidopsis Rhizosphere	VKPECLLAAVVTCLVMMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTEKRKYRKY*
Ga0132255_1053275581	3300015374	Arabidopsis Rhizosphere	LAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTGKRKYRKY*
Ga0182036_110696632	3300016270	Soil	VKPECLLAAVAVLPVMSVAPVLAAPRQIQDFCSEQARHVTFWHRGDYEAFTANCIANHTPTPTGKRQYRKY
Ga0182036_111612001	3300016270	Soil	VKPKCLLVAVVTCLAVMSATPALAASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKARP
Ga0182041_112610561	3300016294	Soil	VKPNGLLLAVVTCLAMTIVTPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTTP
Ga0182033_102868311	3300016319	Soil	VKPECLLAAVAVLPVMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKRK
Ga0182033_104091372	3300016319	Soil	VKPKFVLVAVVTVLVMISETPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTTTMPTKKRKYRKY
Ga0182035_117277002	3300016341	Soil	VKPECLLAVVAVLPVMSVAPVLAAPRQIQDFCSEQARHVTFWHRGDYEAFMANCIANHTPTP
Ga0182035_121945731	3300016341	Soil	MRERANVSTKCLLVAVVGMMSATPALTASRQIQDYCSKQAIRANATFWHRGDSAAFMANCIANHTRT
Ga0182032_115276862	3300016357	Soil	VKPECLLAAVALLPVMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTP
Ga0182034_102859631	3300016371	Soil	MKPEFVRAAVVAFLVMISATPALTASRQIQDFCSNQALHAKVTFSYRGDYEAFMANCIANNTPTPTTPTPTKKRKYRNY
Ga0182034_112804781	3300016371	Soil	VKPEFVLVAVVICLAMMSMTPALTAPRHIQDSCSEQALRTTFHHRGAYEA
Ga0182034_114725393	3300016371	Soil	VKPECLLAVVAVLPVMSVAPVLAAPRQIQDFCSEQARHVTFWHRGDYEAFMASCRANHT
Ga0182037_106398042	3300016404	Soil	SARRRKPEFVLVALITCLAMMSATPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTTPTPTKKRKYRKY
Ga0182037_112869961	3300016404	Soil	MKPEIVLVAVIICLAMMSVTPALTAPRQIQDLCSEQARHVTFSYRGDYEAFMANCIANHSSTPTGKRKYRKY
Ga0182037_121147881	3300016404	Soil	MRERANVSTKCLLVAVVAMMSATPALTASRQIQDYCSKQAIRANATFWHRGDSAAFMANCIANHTPTPTTPP
Ga0182039_100407571	3300016422	Soil	MKPEIVLVAVIICLAMMSVTPALTAPRHIQDSCSEQALRTTFHHRGAYEAFMANCIANHTPTPTKKRNYRNY
Ga0182039_107197341	3300016422	Soil	MKPKWVLVAVTGLALMSWTAALTAPREIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKRKYRK
Ga0182039_116223592	3300016422	Soil	VKPKCLLVAVVTCLAVMSATPALAASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANNTPTPTTTTPTKKRKYRKY
Ga0182038_106065192	3300016445	Soil	MKPEIVLVAVIICLAMMSVTPALTAPRQIQDLCSEQARHVTFSYRGDYEAFMANCIANHTPTPTGKRKARP
Ga0182038_113849171	3300016445	Soil	VKPECLLAAVAVLPVMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHT
Ga0182038_114250851	3300016445	Soil	VKPEFVLVAVVTFLVMISATPALTASRQIQDFCSTQALHANATFWHRGDPEAFMASCIANHTPTPTAPTPTKKRKYRNY
Ga0126371_101472473	3300021560	Tropical Forest Soil	VKPKFVPVALVICLATMSVTPALAAPRQVEDFCFEQSRHVTLYGRAAYEAFMANCMANHTPTP
Ga0126371_102889262	3300021560	Tropical Forest Soil	MAVDNGARARGGEDVKPEFALVAVVICLALMSATPALTASRQIQDYCSKQAIPPNATFWHRGDPEAFMANCIANHTPTPTMPMPIKKSTHRKY
Ga0126371_113696822	3300021560	Tropical Forest Soil	MTEVKDVKPEFVRAAVVTFFVMISATPALTASRQIQDFCSKQALRANATFRHREDSAAFMANCIANHTPTPTQKRKYRK
Ga0126371_136677072	3300021560	Tropical Forest Soil	VRAKCLLVAIVAMMSASPALTASRQIQDYCSNQAIRANATFHQRGDREAFMANCIANLTPTPTTPTPTKKRKYRNY
Ga0207693_102201242	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LDCEKVDANNAISLWSIALGGEDVKPECVLVAVVTCLAMMSVTPALAAPRQIQDFCSKQALHAFSTFWHRGDYEAFMANCIANLTPTPTGKRKYRKY
Ga0207826_10987451	3300027680	Tropical Forest Soil	MKLLLGALVISLALMSVTPALAAPRQIEDFCFQQSRYATLWHRGDWEAFMATCIANLTPTPTKKRSRKY
Ga0207862_11252982	3300027703	Tropical Forest Soil	MKLLLGALVISLALMSVTPALAAPRQIEDFCFQQSRYATLWHRGDWEAFMATCIANLTP
Ga0318516_104530162	3300031543	Soil	MTLWFCEKTKCLLVAVVTCLAMMGATPALTASRQIQDFCSKQALRANATFWHRGDREAFMANCIANLTPTPTGKRKARP
Ga0318538_105145312	3300031546	Soil	MKPEHVPVALVTCLAMMSVTPALAAPRQIENLCSEQARHVTFSYRGDYE
Ga0310915_105718081	3300031573	Soil	VKPKFVLVAVVTVLVMISETPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKARP
Ga0310915_106243561	3300031573	Soil	MRERANVSTKCLLVAVVAMMSATPALTASRQIQDYCSKQAIRANATFWHRGDSAAFMANCIANHTPTPTT
Ga0318572_106079961	3300031681	Soil	MKPEHVPVALVTCLAMMSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHSSTPTGKRKYRKY
Ga0306917_107282111	3300031719	Soil	MKPEIVLVAVIICLAMMSVTPALAAPRQVEDFCFERARHVTLYGRGSYEAFMANCIAN
Ga0306918_103804111	3300031744	Soil	VKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMA
Ga0306918_109365392	3300031744	Soil	VKPECLLVAMVTILAMVSVTPALAAPRQVEDFCFERARHVTLYGRGSYEAFMANCIANLTPTPAGKRKYRKY
Ga0318552_107261902	3300031782	Soil	MKPKWVLVAVTGLALMSGTAALTAPREIQDFCSKQALHANATFWHRGDYEAFMANCIANLTPTPTQK
Ga0318550_106387901	3300031797	Soil	VKPEFVLVAVVTFLVMISATPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTTPTPTKKRKYRKY
Ga0310917_111586401	3300031833	Soil	TFLAMMSATPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCITNLTPTPTGKRKARP
Ga0306919_103286001	3300031879	Soil	VKPECLLAAVAVLPVMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPTGKRKYRK
Ga0306919_107997422	3300031879	Soil	VKPEFVLVAVVTFLAMMSATPALTASSQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTGKR
Ga0306919_109495952	3300031879	Soil	VKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNT
Ga0306925_109529091	3300031890	Soil	DTAVGPRPNSARRRKPEFVLVALITCLAMISATPALTASRQIQDFCSKQAIRANATFWHRGDSAAFMANCIANHTRTPTTPMPTKKRKYRKY
Ga0306923_101348873	3300031910	Soil	AGLPVMSVAPVLAAPRQIQDFCSEQARHVTFWHRGDYEAFMANCIANHTPTPTGKRQYRK
Ga0306923_103321512	3300031910	Soil	MTLWFCEKTKCLLVAVVTCLAMMGATPALTASRQIQDFCSNQALHAKVTFSYRGDYEAFMANCIANNTPTPTTPTPTKKRKYRNY
Ga0310912_104059623	3300031941	Soil	VKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNTPTP
Ga0310916_102622063	3300031942	Soil	VKPEFVLVAVVTFLAMMSATPALTASSQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKARP
Ga0310916_105503992	3300031942	Soil	MKPEIVLVAVIICLAMMSVTPALTAPRQIQDLCSEQARHVTFSYRGDYEAFMANCVANHTPTPTKKRKYRKY
Ga0310916_111322891	3300031942	Soil	VKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQAIRANATFWHRGDSAAFMANCIAN
Ga0310913_112767211	3300031945	Soil	MKPKWVLVAVTGLALMSGTAALTAPREIQDFCSKQALHANATFWHRGDYEAFMANCIANLTPTPTQKRKYRKYLQWQRDTKTEGEATSLGE
Ga0310910_102451783	3300031946	Soil	LSCAAKREARQAPGGGEDVKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNTPTPTTPTPTKKRKYRKY
Ga0310909_106294102	3300031947	Soil	VKPKFVLVAVVTVLVMISETPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTTPTPTKKRKYRKY
Ga0310909_116735721	3300031947	Soil	SCAAKREARQAPGGGEDVKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNTPTPTTPTPTKKRKYRKY
Ga0306926_119058031	3300031954	Soil	AVVICLAMMSVTPALTAPRHIQDSCSEQALRTTFHHRGAYEAFMANCIANHTPTPTKKRNYRNY
Ga0306922_122112151	3300032001	Soil	VKPKCLLVAVVTCLAMTTVTPALTASRQIQDFCSKQALHANATFWHRGDPEAFMANCIA
Ga0318533_104019852	3300032059	Soil	VLVALITCLAMISATPALTASRQIQDFCSKQAIRANATFWHRGDSAAFMANCIANHTPTPTTPMPTKKRKYRKY
Ga0318533_107646622	3300032059	Soil	VKPEFVLVAVVTFLVMISATPALTASRQIQDYCSNQAIRANATFWHRGDREAFMANCIANLTPTPTGKRKARP
Ga0318504_102487391	3300032063	Soil	VKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNTPTPTTPTPTK
Ga0306924_101637421	3300032076	Soil	VKPECLLAAVAVLPVMSVTPALAAPRQIQDFCSKQALHVTFWHRGDYEAFMANCIANHTPTPT
Ga0306924_109630012	3300032076	Soil	LAAVVICLAMMSVTPALAAPRHIEDSCSEQALRTTFHHRGAYEAFMANCIANHTPTPTKKRNYRNY
Ga0306920_1003588763	3300032261	Soil	VKPEFVLVAVVICLAMMSVTPALTAPRHIQDSCSEQALRTTFHHRGAYEAFMANCIANHTPTPTKKRNYRNY
Ga0306920_1032475511	3300032261	Soil	ARQAPGGGEDVKPKCLLVAVVTCLAMTIVTPALTASRQIQDFCSKQALRANATFWHRGDPAAFMANCIANNTPTPTTPTPTKKRKYRKY
Ga0310914_106898262	3300033289	Soil	VTCLAMMSVTPALAAPRQIENLCSEQARHVTFSYRGDYEAFMANCIANHSSTPTGKRKYRKY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066035

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences