Metagenome Family F066186

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066186
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	42 residues
Representative Sequence	MFASENCSKVGCFLEAALPVIAPAVALVWMLSIVAFSSWAM
Number of Associated Samples	101
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.91 %
% of genes near scaffold ends (potentially truncated)	35.43 %
% of genes from short scaffolds (< 2000 bps)	74.02 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.803 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.370 % of family members)
Environment Ontology (ENVO)	Unclassified (38.583 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.945 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.72% β-sheet: 0.00% Coil/Unstructured: 49.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF04945	YHS	31.50
PF13610	DDE_Tnp_IS240	7.09
PF13417	GST_N_3	3.15
PF00005	ABC_tran	3.15
PF04234	CopC	2.36
PF07992	Pyr_redox_2	1.57
PF02586	SRAP	1.57
PF03466	LysR_substrate	1.57
PF08545	ACP_syn_III	1.57
PF01061	ABC2_membrane	0.79
PF03328	HpcH_HpaI	0.79
PF00496	SBP_bac_5	0.79
PF12679	ABC2_membrane_2	0.79
PF03706	LPG_synthase_TM	0.79
PF06764	DUF1223	0.79
PF01048	PNP_UDP_1	0.79
PF00536	SAM_1	0.79
PF02518	HATPase_c	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	2.36
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.57
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.79
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.79
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.79
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.79
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.79
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.79
COG5429	Uncharacterized conserved protein, DUF1223 domain	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.80 %
Unclassified	root	N/A	25.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.80 %
Unclassified	root	N/A	25.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.80 %
Unclassified	root	N/A	25.20 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	72.44 %
Unclassified	root	N/A	25.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	67.72 %
Unclassified	root	N/A	25.20 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	43.31 %
Unclassified	root	N/A	25.20 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.31 %
Unclassified	root	N/A	25.20 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3.94 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.57 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.31 %
Unclassified	root	N/A	25.20 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3.94 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	1.57 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.31 %
Unclassified	root	N/A	25.20 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3.94 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	1.57 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	43.31 %
Unclassified	root	N/A	25.20 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3.94 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	1.57 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003351\|JGI26346J50198_1027787	Not Available	563	Open in IMG/M
3300003505\|JGIcombinedJ51221_10004336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4166	Open in IMG/M
3300003505\|JGIcombinedJ51221_10005907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3730	Open in IMG/M
3300004092\|Ga0062389_102263347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300005332\|Ga0066388_101761069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1099	Open in IMG/M
3300005434\|Ga0070709_10188537	Not Available	1453	Open in IMG/M
3300005439\|Ga0070711_100000862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15948	Open in IMG/M
3300005451\|Ga0066681_10136722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1432	Open in IMG/M
3300006028\|Ga0070717_10469117	Not Available	1136	Open in IMG/M
3300006163\|Ga0070715_10348602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300006172\|Ga0075018_10828414	Not Available	509	Open in IMG/M
3300006175\|Ga0070712_100002686	All Organisms → cellular organisms → Bacteria → Proteobacteria	10974	Open in IMG/M
3300006175\|Ga0070712_100044825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3051	Open in IMG/M
3300006176\|Ga0070765_101154099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	732	Open in IMG/M
3300007255\|Ga0099791_10069612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1594	Open in IMG/M
3300007258\|Ga0099793_10212630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	929	Open in IMG/M
3300007788\|Ga0099795_10213409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300007788\|Ga0099795_10371017	Not Available	644	Open in IMG/M
3300009143\|Ga0099792_10008353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4280	Open in IMG/M
3300010343\|Ga0074044_10100951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1941	Open in IMG/M
3300010359\|Ga0126376_11321898	Not Available	742	Open in IMG/M
3300010376\|Ga0126381_101664679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	922	Open in IMG/M
3300011269\|Ga0137392_10498113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1012	Open in IMG/M
3300012202\|Ga0137363_10491776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1030	Open in IMG/M
3300012203\|Ga0137399_10605436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300012362\|Ga0137361_10156547	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300012582\|Ga0137358_10199486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1365	Open in IMG/M
3300012922\|Ga0137394_10349194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1263	Open in IMG/M
3300012922\|Ga0137394_11229737	Not Available	612	Open in IMG/M
3300012923\|Ga0137359_10085535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2773	Open in IMG/M
3300012924\|Ga0137413_10457087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	931	Open in IMG/M
3300012927\|Ga0137416_10107690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2109	Open in IMG/M
3300016270\|Ga0182036_10267342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1287	Open in IMG/M
3300016371\|Ga0182034_10113848	Not Available	1967	Open in IMG/M
3300016445\|Ga0182038_10518931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300018433\|Ga0066667_10247668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1348	Open in IMG/M
3300018482\|Ga0066669_11627807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300020579\|Ga0210407_10035731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3696	Open in IMG/M
3300020580\|Ga0210403_10025953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4670	Open in IMG/M
3300020580\|Ga0210403_10078287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2660	Open in IMG/M
3300020580\|Ga0210403_10210421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1596	Open in IMG/M
3300020581\|Ga0210399_10049590	All Organisms → cellular organisms → Bacteria → Proteobacteria	3372	Open in IMG/M
3300020582\|Ga0210395_10934834	Not Available	644	Open in IMG/M
3300020583\|Ga0210401_10402768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1231	Open in IMG/M
3300021168\|Ga0210406_10722291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300021170\|Ga0210400_10894983	Not Available	725	Open in IMG/M
3300021180\|Ga0210396_11329868	Not Available	597	Open in IMG/M
3300021405\|Ga0210387_10318353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1371	Open in IMG/M
3300021478\|Ga0210402_11504671	Not Available	600	Open in IMG/M
3300021479\|Ga0210410_10559967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300024288\|Ga0179589_10219479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300025905\|Ga0207685_10835881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300026551\|Ga0209648_10079679	All Organisms → cellular organisms → Bacteria	2737	Open in IMG/M
3300026551\|Ga0209648_10409254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300026557\|Ga0179587_10321571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1000	Open in IMG/M
3300027071\|Ga0209214_1025477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300027071\|Ga0209214_1033013	Not Available	686	Open in IMG/M
3300027576\|Ga0209003_1074917	Not Available	624	Open in IMG/M
3300027635\|Ga0209625_1065444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300027698\|Ga0209446_1002046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4907	Open in IMG/M
3300027729\|Ga0209248_10120198	Not Available	789	Open in IMG/M
3300027737\|Ga0209038_10007304	All Organisms → cellular organisms → Bacteria → Proteobacteria	3264	Open in IMG/M
3300027783\|Ga0209448_10009284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3127	Open in IMG/M
3300027783\|Ga0209448_10143334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300027783\|Ga0209448_10279004	Not Available	549	Open in IMG/M
3300027812\|Ga0209656_10000361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30069	Open in IMG/M
3300027812\|Ga0209656_10481641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300027903\|Ga0209488_10025024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4336	Open in IMG/M
3300027903\|Ga0209488_10050196	All Organisms → cellular organisms → Bacteria → Proteobacteria	3068	Open in IMG/M
3300027903\|Ga0209488_10364216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1073	Open in IMG/M
3300028536\|Ga0137415_10153686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2137	Open in IMG/M
3300028536\|Ga0137415_11096419	Not Available	609	Open in IMG/M
3300031057\|Ga0170834_106018899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2150	Open in IMG/M
3300031057\|Ga0170834_111544719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300031231\|Ga0170824_119345695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1022	Open in IMG/M
3300031543\|Ga0318516_10450313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300031545\|Ga0318541_10225650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300031546\|Ga0318538_10054662	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300031572\|Ga0318515_10023362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2945	Open in IMG/M
3300031572\|Ga0318515_10076539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1728	Open in IMG/M
3300031573\|Ga0310915_10020207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4038	Open in IMG/M
3300031573\|Ga0310915_10290397	Not Available	1154	Open in IMG/M
3300031640\|Ga0318555_10336663	Not Available	817	Open in IMG/M
3300031668\|Ga0318542_10044624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300031679\|Ga0318561_10016942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3312	Open in IMG/M
3300031680\|Ga0318574_10023876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3018	Open in IMG/M
3300031681\|Ga0318572_10201442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1162	Open in IMG/M
3300031682\|Ga0318560_10564811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300031682\|Ga0318560_10736930	Not Available	532	Open in IMG/M
3300031708\|Ga0310686_106612249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2090	Open in IMG/M
3300031713\|Ga0318496_10255932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	965	Open in IMG/M
3300031718\|Ga0307474_10414537	Not Available	1050	Open in IMG/M
3300031719\|Ga0306917_10300141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1240	Open in IMG/M
3300031736\|Ga0318501_10002714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5700	Open in IMG/M
3300031744\|Ga0306918_10313695	Not Available	1210	Open in IMG/M
3300031751\|Ga0318494_10514893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	698	Open in IMG/M
3300031753\|Ga0307477_10010153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6479	Open in IMG/M
3300031753\|Ga0307477_10085019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2195	Open in IMG/M
3300031753\|Ga0307477_10412082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	925	Open in IMG/M
3300031764\|Ga0318535_10376149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300031770\|Ga0318521_10373524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	847	Open in IMG/M
3300031798\|Ga0318523_10158792	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300031845\|Ga0318511_10080710	Not Available	1358	Open in IMG/M
3300031879\|Ga0306919_10262154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1303	Open in IMG/M
3300031890\|Ga0306925_11732224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300031893\|Ga0318536_10481969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300031894\|Ga0318522_10012721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2583	Open in IMG/M
3300031894\|Ga0318522_10347764	Not Available	561	Open in IMG/M
3300031896\|Ga0318551_10337484	Not Available	851	Open in IMG/M
3300031897\|Ga0318520_10019891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3175	Open in IMG/M
3300031897\|Ga0318520_10253376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1051	Open in IMG/M
3300031910\|Ga0306923_10585092	Not Available	1254	Open in IMG/M
3300031946\|Ga0310910_10515740	Not Available	949	Open in IMG/M
3300031946\|Ga0310910_11539720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031962\|Ga0307479_10213964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1899	Open in IMG/M
3300032039\|Ga0318559_10565674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300032052\|Ga0318506_10235221	Not Available	811	Open in IMG/M
3300032059\|Ga0318533_10227531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1342	Open in IMG/M
3300032064\|Ga0318510_10134673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	965	Open in IMG/M
3300032076\|Ga0306924_10081653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3625	Open in IMG/M
3300032089\|Ga0318525_10361335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300032090\|Ga0318518_10443348	Not Available	665	Open in IMG/M
3300032261\|Ga0306920_101607099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	924	Open in IMG/M
3300032261\|Ga0306920_102889480	Not Available	652	Open in IMG/M
3300032261\|Ga0306920_103864786	Not Available	546	Open in IMG/M
3300033290\|Ga0318519_10302002	Not Available	937	Open in IMG/M
3300033290\|Ga0318519_10770811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.34%
Aquatic	Environmental → Aquatic	8.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.34%
Freshwater	Environmental → Aquatic → Freshwater	7.87%
Sediment	Environmental → Aquatic → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.74%
Loam	Environmental → Terrestrial → Soil → Loam	11.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	55.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.37%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26346J50198_10277872	3300003351	Bog Forest Soil	MFASECCSKIGCLLEAALPIVAPAVALVSMLSILTYACC*
JGIcombinedJ51221_100043361	3300003505	Forest Soil	MFASESCSKIGCFLEAAMPAIAPAFALIWMLSIAAFSCWAM*
JGIcombinedJ51221_100059077	3300003505	Forest Soil	MFASESCSKVGCFLEAALPAIAPAVALVWMLSIAAFSCWEM*
Ga0062389_1022633472	3300004092	Bog Forest Soil	MFASESCSKLGCLLEVTLPAIGPAVALFCMLSITAFCCSMM*
Ga0066388_1017610691	3300005332	Tropical Forest Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAAFASWVM*
Ga0070709_101885371	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MEGEMFASESCSKVGCFEAALPAIAPAVALVWMLSIAAFSCW
Ga0070711_10000086218	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEGEMFASESCSKVGCFEAALPAIAPAVALVWMLSIAAFSCWEM*
Ga0066681_101367223	3300005451	Soil	MFASESCSKLGCFFEAALPAIAPAVALFWMLSIAAFCCSTM*
Ga0070717_104691172	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MFATEHCSKVGCFLEAALPGIAPAVALICMLSIAA
Ga0070715_103486022	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MEGKMFATEHCSKVGCFLEAAMPGIAPAVALICMLSIAAFASCVM*
Ga0075018_108284142	3300006172	Watersheds	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSWVM*
Ga0070712_1000026862	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFASESCSKVGCFEAALPAIAPAVALVWMLSIAAFSCWEM*
Ga0070712_1000448258	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFATEHCSKVGCFLEAALPGIAPAVALICMLSIAAFASWVM*
Ga0070765_1011540991	3300006176	Soil	MFASESCSKVGCFLEAAMPAIAPAVALIWMLSIVAFSCWAM*
Ga0099791_100696122	3300007255	Vadose Zone Soil	MFARENCSKVGCYLEAALPLIGPAVALIGMLSLVAWS*
Ga0099793_102126302	3300007258	Vadose Zone Soil	MKMFASENCSKVGCFLEAALPVIAPAVALVWMLSIVAFSSWAM*
Ga0099795_102134092	3300007788	Vadose Zone Soil	MESEMFASESCSKVGCFLEAALPAIAPAVALFWMLSIAVFCCSTM*
Ga0099795_103710171	3300007788	Vadose Zone Soil	MEGEMFASESCSKVGCFLEAALPVIAPAVALVWMLSIAAFSCWAM*
Ga0099792_100083531	3300009143	Vadose Zone Soil	MESEMFASENCSKVGCFLEAAMPSIAPAVGSIWMLSIAAFLSWAM*
Ga0074044_101009513	3300010343	Bog Forest Soil	VRVEESEMFASESCSKVGCFLEGALPVIAPAVALVSMLSILTYACC*
Ga0126376_113218981	3300010359	Tropical Forest Soil	MEGKMFATEHCSKVGCFLEAALPDIAPVVALICMLSIAAFASWV
Ga0126381_1016646793	3300010376	Tropical Forest Soil	CCVKVGCFLEAALSGIAPAVALICMLSIAAFASWVM*
Ga0137392_104981131	3300011269	Vadose Zone Soil	MESEMFASENCSKVGCFLEAAMPSIAPAVGLIWMLSIAAFLSWAM*
Ga0137363_104917762	3300012202	Vadose Zone Soil	MFASENCSKVGCFLEAALPVIAPAVALVWMLSIVAFSSWAM*
Ga0137399_106054362	3300012203	Vadose Zone Soil	MKMFASENFSKVGCFLEAALPVIAPAVALVWMLSIVAFSSWAM*
Ga0137361_101565471	3300012362	Vadose Zone Soil	MKMFASENFSKVGCFLEAALPVIAPAVALVWMLSIVAFSSSAM*
Ga0137358_101994861	3300012582	Vadose Zone Soil	MFARENCSKVGCYLEAALPLIAPAVALIGMLSLVA
Ga0137394_103491943	3300012922	Vadose Zone Soil	MFARENCSKVGCFLEAALPVIAPSVALVWMLSIAAFSFWAM*
Ga0137394_112297371	3300012922	Vadose Zone Soil	MESEMFASENCSKVGCFLEAAMPAIAPAVGLIWMLSIAAFSSWGM*
Ga0137359_100855354	3300012923	Vadose Zone Soil	MFARENCSKVDCYLEAALPLIAPAVALIGMLSLVAWS*
Ga0137413_104570873	3300012924	Vadose Zone Soil	VRVEESEMFASESCSKVGCFLEGALPVIAPAVALVSMLSIFAFACC*
Ga0137416_101076902	3300012927	Vadose Zone Soil	MKMFASENCSKVGCFLEAAMPAIAPAVGLIWMLSIAAFSSWAM*
Ga0182036_102673421	3300016270	Soil	FASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0182034_101138481	3300016371	Soil	MFASENCTKVGCFLAAALPGIAPAVALIWMLSIAAFSSW
Ga0182038_105189311	3300016445	Soil	MFATEHCSKVCCFLEATLPGIAPAVALICKLSIAASVSWV
Ga0066667_102476683	3300018433	Grasslands Soil	MESEMFASESCSKIGCFFEAALPAIAPAVALFWMLSIAAFCCSTM
Ga0066669_116278071	3300018482	Grasslands Soil	MESEMFASESCSKVGCFFEAALPAIAPAVALFWMLSIAAFCCSTM
Ga0210407_100357312	3300020579	Soil	MFATEHCSKVGCFLEAALPGIAPAVALICMLSIAAFASWVM
Ga0210403_100259531	3300020580	Soil	MFASESCSKIGCFLEAAMPAIAPAFALIWMLSIAAFSCWAM
Ga0210403_100782871	3300020580	Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSWVM
Ga0210403_102104211	3300020580	Soil	MFARENCSKVGCFLEAALPVIAPSVALVWMLSIAAFSFWAM
Ga0210399_100495903	3300020581	Soil	MFASESCSKVGCFLEATLPVIGPAVALVWMLSIVAFSSWAM
Ga0210395_109348341	3300020582	Soil	MFATEHCSKVGCFLEAALPGIAPAVALICMLSSAASV
Ga0210401_104027683	3300020583	Soil	MESEMFASEYCTKVGCFLEAALPAIAPAVALIWMLSIAALSSWAM
Ga0210406_107222912	3300021168	Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAAFASWVM
Ga0210400_108949832	3300021170	Soil	MFASESCSKVGCFLEAAMPAIAPAVALIWMLSIVAFSCWAM
Ga0210396_113298682	3300021180	Soil	MFASERCSKIGCFLEAALPIVAPAVALVSMLSILTYACC
Ga0210387_103183532	3300021405	Soil	MMFTRENCSKVGCFLEAALPVIAPSVALVWMLSIAAFSFWAM
Ga0210402_115046711	3300021478	Soil	MFASESCSKVGCFLEAAMPAIAPAVALVWMLSIVALSCWAM
Ga0210410_105599674	3300021479	Soil	AGSSGQWRMKMFASEGCSKFGCFLEAALPVIAPAVALVWMLSIAAFSSWMM
Ga0179589_102194792	3300024288	Vadose Zone Soil	MFASESCSKVGCFLEGALPVIAPAVALVSMLSIFAFACC
Ga0207685_108358812	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MEGKMFATEHCSKVGCFLEAAMPGIAPAVALICMLSIAAFASWVM
Ga0209648_100796794	3300026551	Grasslands Soil	MFANERCSKIGCFLEGALPVIAPAVALVSMLSIFAFACC
Ga0209648_104092542	3300026551	Grasslands Soil	MKMFASENCSKVGCFLEAALPVIAPAVGLVWMLSIAAFSSWAM
Ga0179587_103215712	3300026557	Vadose Zone Soil	MFARENCSKVGCYLEAALPLIGPAVALIGMLSLVAWS
Ga0209214_10254772	3300027071	Forest Soil	KMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAAFASWVM
Ga0209214_10330132	3300027071	Forest Soil	MESEMFASESCSKIGCFLEAAMPAIAPAVALISMLSIVAFSCWAM
Ga0209003_10749172	3300027576	Forest Soil	MSTSENCSKVGCFLEGALPIIAPTVALVWMLSIAAFSYWAM
Ga0209625_10654441	3300027635	Forest Soil	MESEMFASENCTKVGCFLEAALPALALIWMLSIATFSSWAM
Ga0209446_10020467	3300027698	Bog Forest Soil	MSTSENCSKVGCFLEAALPVIAPAVALLWMLSLVAWS
Ga0209248_101201981	3300027729	Bog Forest Soil	MSASENCSKVGCFLEGALPVIAPAVALIWMLSLVAWS
Ga0209038_100073042	3300027737	Bog Forest Soil	MFASENCSKIGCFLEAALPVIAPAVALVSMLSIFTFSCC
Ga0209448_100092844	3300027783	Bog Forest Soil	MFASENCAKIACFLEDALPVIAPAVGLVSMLSIFTFSCC
Ga0209448_101433342	3300027783	Bog Forest Soil	MSSRENCSKVGCFLEAALPVIAPAVALIWMLSLVAWS
Ga0209448_102790041	3300027783	Bog Forest Soil	MSTSENCAKVGCFLEAALPVIAPAVALIWMLSLVAWS
Ga0209656_1000036128	3300027812	Bog Forest Soil	MSTGENCSKVGCFLEAALPVIAPAVALIWMLSLVAWS
Ga0209656_104816412	3300027812	Bog Forest Soil	RENCSKVGCFLEAALPVIAPSVALVWMLSLAAFSFWAM
Ga0209488_100250246	3300027903	Vadose Zone Soil	MFASESCSKVGCFLEAALPVIAPAVALVWMLSIAAFSCWAM
Ga0209488_100501964	3300027903	Vadose Zone Soil	MFASESCSKVGCFLEAALPVIAPAVALVWMLSIAAFSCWEM
Ga0209488_103642161	3300027903	Vadose Zone Soil	MFASENFSKVGCFLEAALPVIAPAVALVWMLSIVAFSSWAM
Ga0137415_101536864	3300028536	Vadose Zone Soil	MKMFASENCSKVGCFLEAAMPAIAPAVGLIWMLSIAAFSSWAM
Ga0137415_110964192	3300028536	Vadose Zone Soil	MEGEMFASESCSKVGCFLEAALPVIAPAVALVWMLSIAAFSCWAM
Ga0170834_1060188992	3300031057	Forest Soil	MMFARENCSKVGCFLEAALPVIAPSVALVWMLSIAAFSFWAM
Ga0170834_1115447191	3300031057	Forest Soil	MESEMFASENCTKVGCFLEAALPAIAPAVALIWMLSIATFSSWAM
Ga0170824_1193456952	3300031231	Forest Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVVLICMLSIAASVSWVM
Ga0318516_104503132	3300031543	Soil	MFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWAM
Ga0318541_102256501	3300031545	Soil	MSTSENCSKVGCFLEAALPVIAPAVALIWMLSLVAWS
Ga0318538_100546623	3300031546	Soil	MECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0318515_100233625	3300031572	Soil	MECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFT
Ga0318515_100765393	3300031572	Soil	MKMFAGENCSKIGCFFEAALPVIAPSVALVWMLSIAAFSGWAM
Ga0310915_100202071	3300031573	Soil	MFAGENCSKIGCFLEAALPVIAPSVALVWMLSIAAFSGWAM
Ga0310915_102903971	3300031573	Soil	TMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0318555_103366632	3300031640	Soil	MFAGENCSKIGCFFEAALPVIAPSVALVWMLSIAA
Ga0318542_100446242	3300031668	Soil	MFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0318561_100169423	3300031679	Soil	MFASENCSKLGCFLEAALPGVAPAFALIWMLIAFTSWVM
Ga0318574_100238762	3300031680	Soil	MFAGENCSKIGCFFEAALPVIAPSVALVWMLSIAAFSGWAM
Ga0318572_102014422	3300031681	Soil	MKMFAGENCSKIGCFFEAALTVIAPSVALVWMLSIAAFSGWAM
Ga0318560_105648112	3300031682	Soil	RSFLPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0318560_107369301	3300031682	Soil	MFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFT
Ga0310686_1066122492	3300031708	Soil	MFASESCSKFGCVLEAALPVIGPAVALVWMLSIAAFSSWAM
Ga0318496_102559323	3300031713	Soil	AIARSFLPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0307474_104145371	3300031718	Hardwood Forest Soil	MFARENCSKVGCFLEAALPLIAPSVALVWMLSIAAFSFW
Ga0306917_103001411	3300031719	Soil	SENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0318501_100027145	3300031736	Soil	MFAGENCSKIGCFFEAALTVIAPSVALVWMLSIAAFSGWAM
Ga0306918_103136951	3300031744	Soil	PMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLIAFTSWVM
Ga0318494_105148931	3300031751	Soil	ARSLLPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0307477_100101538	3300031753	Hardwood Forest Soil	MFAGENCSKVGCFLEAALPLIAPAVALIGMLSLVAWS
Ga0307477_100850194	3300031753	Hardwood Forest Soil	MEGKMFAAEHCSKVGCFLEAAMPGIAPAVALICMLSIAAFASWVM
Ga0307477_104120822	3300031753	Hardwood Forest Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSWAM
Ga0318535_103761492	3300031764	Soil	PMEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSWVM
Ga0318521_103735241	3300031770	Soil	DPGNALTMESEMFASENCTKVGCFLAAALPGIAPAVALIWMLSIAAFSSWAM
Ga0318523_101587921	3300031798	Soil	MEGKMFATEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSW
Ga0318511_100807102	3300031845	Soil	VFASENCSKVGCFLEGALPIIAPAVALIWMLSIAAFSCWAM
Ga0306919_102621543	3300031879	Soil	MFASENCTKVGCFLAAALPGIAPAVALIWMLSIAAFSSWAM
Ga0306925_117322242	3300031890	Soil	MESEMFASENCTKVGCFLAAALPGIAPAVALIWMLSIAAFSSWAM
Ga0318536_104819691	3300031893	Soil	VKMFARENCSKVGCFLEAALPVIAPSVALVWMLSIAAISFWAM
Ga0318522_100127216	3300031894	Soil	MECTMFASENCSKLGCFLEAALPGVAPAFALIWMLIAFTS
Ga0318522_103477641	3300031894	Soil	IARSFLPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0318551_103374841	3300031896	Soil	MECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0318520_100198911	3300031897	Soil	MECTMFASENCSKLGCFLEAALPGVAPAFALIWMLIAFTSWVM
Ga0318520_102533761	3300031897	Soil	LPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0306923_105850924	3300031910	Soil	LPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0310910_105157401	3300031946	Soil	MFASENCSKVGCVLEGALPIIAPAVALIWMLSIAAFSCWAM
Ga0310910_115397202	3300031946	Soil	ESEMFASENCTKVGCFLAAALPGIAPAVALIWMLSIAAFSSWAM
Ga0307479_102139643	3300031962	Hardwood Forest Soil	MEGKMFAAEHCSKVGCFLEAAMPGIAPAVALICMLSIAAFASSVM
Ga0318559_105656741	3300032039	Soil	ARSFLPMECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0318506_102352212	3300032052	Soil	MFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWV
Ga0318533_102275311	3300032059	Soil	PTECTMFASENCSKLGCFLEAALPGVAPAFALIWMLSFAFTSWVM
Ga0318510_101346733	3300032064	Soil	ASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0306924_100816531	3300032076	Soil	AGENCSKIGCFLEAALPVIAPSVALVWMLSIAAFSGWAM
Ga0318525_103613351	3300032089	Soil	TEHCSKVGCFLEAALPGIAPAVALICMLSIAASVSWVM
Ga0318518_104433481	3300032090	Soil	CTMFASENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWVM
Ga0306920_1016070993	3300032261	Soil	SENCSKLGCFLEAALPGVAPAFALIWMLSIAFTSWAM
Ga0306920_1028894802	3300032261	Soil	MFASENSSKVGCFLEAALPGVAPAVALICMLSIAAFTSLVM
Ga0306920_1038647862	3300032261	Soil	GENCSKIGCFLEAALPVIAPSVALVWMLSIAAFSGWAM
Ga0318519_103020022	3300033290	Soil	MFAGENCSKIGCFLEAALPVIAPSVALVWMLSIAAFSGWA
Ga0318519_107708112	3300033290	Soil	VKMFAGENCSKIGCFLEAALPVIAPSVALVWMLSIAAFSGWAM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066186

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences