Metagenome / Metatranscriptome Family F066245

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066245
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	48 residues
Representative Sequence	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGP
Number of Associated Samples	87
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.21 %
% of genes near scaffold ends (potentially truncated)	91.34 %
% of genes from short scaffolds (< 2000 bps)	93.70 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.378 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.347 % of family members)
Environment Ontology (ENVO)	Unclassified (46.457 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.780 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.70% β-sheet: 16.44% Coil/Unstructured: 69.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF03992	ABM	5.51
PF08241	Methyltransf_11	0.79
PF16868	NMT1_3	0.79
PF08734	GYD	0.79
PF01609	DDE_Tnp_1	0.79
PF07045	DUF1330	0.79
PF05199	GMC_oxred_C	0.79
PF01028	Topoisom_I	0.79
PF12728	HTH_17	0.79
PF05362	Lon_C	0.79
PF00589	Phage_integrase	0.79
PF13472	Lipase_GDSL_2	0.79
PF02910	Succ_DH_flav_C	0.79
PF07681	DoxX	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.79
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.79
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.79
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.79
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.79
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.79
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	0.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.79
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.79
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.79
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.79
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.79
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.38 %
Unclassified	root	N/A	23.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.38 %
Unclassified	root	N/A	23.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.38 %
Unclassified	root	N/A	23.62 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.02 %
Unclassified	root	N/A	23.62 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	71.65 %
Unclassified	root	N/A	23.62 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	52.76 %
Unclassified	root	N/A	23.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.09 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.76 %
Unclassified	root	N/A	23.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.30 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.76 %
Unclassified	root	N/A	23.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.51 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.76 %
Unclassified	root	N/A	23.62 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.15 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1058603	Not Available	589	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1070770	Not Available	530	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10157521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1024074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1141	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1077095	Not Available	586	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1077561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10105647	Not Available	592	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10136810	Not Available	510	Open in IMG/M
3300001431\|F14TB_103924017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300004633\|Ga0066395_10463138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
3300005332\|Ga0066388_102400651	Not Available	956	Open in IMG/M
3300005332\|Ga0066388_104931075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300005332\|Ga0066388_105201220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300005363\|Ga0008090_15779326	Not Available	1180	Open in IMG/M
3300005467\|Ga0070706_100432530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1225	Open in IMG/M
3300005558\|Ga0066698_10255060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1211	Open in IMG/M
3300005713\|Ga0066905_101339646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300005713\|Ga0066905_101837024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300005764\|Ga0066903_106302641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300005764\|Ga0066903_106358482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300009137\|Ga0066709_101758247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	874	Open in IMG/M
3300009143\|Ga0099792_10909664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300010043\|Ga0126380_12098275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300010046\|Ga0126384_11010766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
3300010046\|Ga0126384_11862743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300010046\|Ga0126384_12104357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300010046\|Ga0126384_12382373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300010048\|Ga0126373_13205622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300010301\|Ga0134070_10386518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300010358\|Ga0126370_10783919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300010358\|Ga0126370_11009156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300010358\|Ga0126370_11670605	Not Available	612	Open in IMG/M
3300010359\|Ga0126376_11878639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300010359\|Ga0126376_12188496	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300010359\|Ga0126376_12919773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300010359\|Ga0126376_13033223	Not Available	519	Open in IMG/M
3300010360\|Ga0126372_11899857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	640	Open in IMG/M
3300010361\|Ga0126378_13070105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300010361\|Ga0126378_13186758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300010361\|Ga0126378_13316475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300010366\|Ga0126379_10181001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2004	Open in IMG/M
3300010366\|Ga0126379_10324449	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300010366\|Ga0126379_11826563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300010366\|Ga0126379_12315068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300010376\|Ga0126381_101891105	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300010376\|Ga0126381_102631576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300010376\|Ga0126381_103158625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300010398\|Ga0126383_11429583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300011270\|Ga0137391_11210379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300012204\|Ga0137374_10261642	All Organisms → cellular organisms → Bacteria → Proteobacteria	1443	Open in IMG/M
3300012205\|Ga0137362_11234390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300012362\|Ga0137361_11956986	Not Available	502	Open in IMG/M
3300012925\|Ga0137419_11477926	Not Available	575	Open in IMG/M
3300012927\|Ga0137416_11573123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	598	Open in IMG/M
3300012948\|Ga0126375_11074852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300012971\|Ga0126369_10936589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	952	Open in IMG/M
3300012971\|Ga0126369_13712884	Not Available	500	Open in IMG/M
3300016270\|Ga0182036_10065252	Not Available	2351	Open in IMG/M
3300016270\|Ga0182036_11192208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300016294\|Ga0182041_11103493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300016294\|Ga0182041_11316350	Not Available	661	Open in IMG/M
3300016341\|Ga0182035_10205437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1561	Open in IMG/M
3300016341\|Ga0182035_11143385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300016341\|Ga0182035_11321048	Not Available	646	Open in IMG/M
3300016371\|Ga0182034_11314916	Not Available	631	Open in IMG/M
3300016371\|Ga0182034_12040934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300016387\|Ga0182040_11108315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300016387\|Ga0182040_11717588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	536	Open in IMG/M
3300016404\|Ga0182037_11520286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300018482\|Ga0066669_11733073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300018482\|Ga0066669_12128775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300021078\|Ga0210381_10200785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	695	Open in IMG/M
3300021170\|Ga0210400_10260405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300021439\|Ga0213879_10108073	Not Available	784	Open in IMG/M
3300021444\|Ga0213878_10295515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	694	Open in IMG/M
3300021560\|Ga0126371_12709627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300026314\|Ga0209268_1175960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300027527\|Ga0209684_1005012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2209	Open in IMG/M
3300027654\|Ga0209799_1006074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2515	Open in IMG/M
3300027874\|Ga0209465_10082431	Not Available	1567	Open in IMG/M
3300031543\|Ga0318516_10866860	Not Available	509	Open in IMG/M
3300031564\|Ga0318573_10074308	Not Available	1705	Open in IMG/M
3300031572\|Ga0318515_10647323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300031573\|Ga0310915_10854157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031668\|Ga0318542_10463555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300031668\|Ga0318542_10523104	Not Available	617	Open in IMG/M
3300031680\|Ga0318574_10201436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300031713\|Ga0318496_10601388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300031719\|Ga0306917_10164673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1656	Open in IMG/M
3300031719\|Ga0306917_10921932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031723\|Ga0318493_10777278	Not Available	539	Open in IMG/M
3300031724\|Ga0318500_10297156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300031744\|Ga0306918_10702257	Not Available	791	Open in IMG/M
3300031747\|Ga0318502_10445857	Not Available	773	Open in IMG/M
3300031751\|Ga0318494_10095110	Not Available	1636	Open in IMG/M
3300031765\|Ga0318554_10638744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300031768\|Ga0318509_10086913	Not Available	1666	Open in IMG/M
3300031771\|Ga0318546_10406962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	950	Open in IMG/M
3300031793\|Ga0318548_10242648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	885	Open in IMG/M
3300031793\|Ga0318548_10305981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300031795\|Ga0318557_10588162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300031797\|Ga0318550_10017028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2935	Open in IMG/M
3300031821\|Ga0318567_10408632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300031833\|Ga0310917_10029420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3236	Open in IMG/M
3300031833\|Ga0310917_10382066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M
3300031833\|Ga0310917_10741272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300031845\|Ga0318511_10609649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031880\|Ga0318544_10212810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	746	Open in IMG/M
3300031890\|Ga0306925_10979958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300031893\|Ga0318536_10390820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	703	Open in IMG/M
3300031910\|Ga0306923_11723361	Not Available	646	Open in IMG/M
3300031910\|Ga0306923_11931533	Not Available	601	Open in IMG/M
3300031941\|Ga0310912_10054369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2825	Open in IMG/M
3300031946\|Ga0310910_10275966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1319	Open in IMG/M
3300031947\|Ga0310909_10877594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300031954\|Ga0306926_11241997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	873	Open in IMG/M
3300032039\|Ga0318559_10468766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300032042\|Ga0318545_10163579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300032044\|Ga0318558_10637531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300032055\|Ga0318575_10579545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300032066\|Ga0318514_10664260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300032076\|Ga0306924_10328075	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300032076\|Ga0306924_10831352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300032076\|Ga0306924_12527024	Not Available	514	Open in IMG/M
3300032261\|Ga0306920_100161963	All Organisms → cellular organisms → Bacteria	3335	Open in IMG/M
3300032261\|Ga0306920_101300970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1046	Open in IMG/M
3300033290\|Ga0318519_10495465	Not Available	735	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.21%
Aquatic	Environmental → Aquatic	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.21%
Freshwater	Environmental → Aquatic → Freshwater	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.98%
Loam	Environmental → Terrestrial → Soil → Loam	10.24%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.51%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.36%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.57%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10586031	3300000580	Forest Soil	MKHPTPSNFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDI
AF_2010_repII_A01DRAFT_10707702	3300000580	Forest Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDI
AF_2010_repII_A1DRAFT_101575211	3300000597	Forest Soil	MKHPTPSDFIVKVEESHVRVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRH
AF_2010_repII_A100DRAFT_10240742	3300000655	Forest Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARVGRSHPRM*
AF_2010_repII_A100DRAFT_10770952	3300000655	Forest Soil	MKHPTPSNFIVKVEESHVSVIFKPSNSDYYFGRLVDPED
AF_2010_repII_A100DRAFT_10775612	3300000655	Forest Soil	MKHPSPSDFIINVEESHVSAIFKPSNSDYYFGRLADPEDIARF
AF_2010_repII_A001DRAFT_101056472	3300000793	Forest Soil	MKHPSPSDFIINVEESHVSAIFKPSNSDYYFGRLADPEDIAR
AF_2010_repII_A001DRAFT_101368102	3300000793	Forest Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARF
F14TB_1039240171	3300001431	Soil	MKHPTPSDFIVNVQESHVNVIFKPSNSDYYFGRLADPEDIARF
Ga0066395_104631383	3300004633	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYG
Ga0066388_1024006511	3300005332	Tropical Forest Soil	MKHPTPSDFIINVEESHVSVIFKPSNSDYYFGRLADPEDI
Ga0066388_1049310751	3300005332	Tropical Forest Soil	MKHPTPSDFIINIKESHVSVIFKPSNSDYHFGRLADPEDIARFGPLSSLNVRHGNTGDTGDYPSEE
Ga0066388_1052012201	3300005332	Tropical Forest Soil	MKHPTPSDFIVKIEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNVR
Ga0008090_157793261	3300005363	Tropical Rainforest Soil	MKRPTPSNFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARVGRSHPRM*
Ga0070706_1004325304	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKHPTPSDFIVKVNESYVNVIFKPTDSDYNFGRLADPEDIARYGPLSRSPN
Ga0066698_102550604	3300005558	Soil	MKHPTPSDFIVKVNESYVNVIFKPTDSDYNFGRLADPE
Ga0066905_1013396462	3300005713	Tropical Forest Soil	MKHPTPSDFIVKVEESHVRVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGN
Ga0066905_1018370241	3300005713	Tropical Forest Soil	VKHPIPSDFIINVEESHVSVIFKPSNSDYYFGRLADPEDIARFG
Ga0066903_1063026412	3300005764	Tropical Forest Soil	MKHPTPSDFIVKVQESHVSVIFKPSDSYYSFGRLA
Ga0066903_1063584821	3300005764	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYGPLSQS
Ga0066709_1017582471	3300009137	Grasslands Soil	MKHPTPSDFTVEAKEANVSVTFKPSDSHYNFGRLADPEDIARYGPLSRS
Ga0099792_109096641	3300009143	Vadose Zone Soil	MTVDVQESHVSVLFKPSDSHYGFGRLADPEDIARYGPLLQS
Ga0126380_120982751	3300010043	Tropical Forest Soil	MKHPTPSDFIVNVEESNVSVIFKPSDSYYSFGRLADPDDIARFRSSMSSQ*
Ga0126384_110107662	3300010046	Tropical Forest Soil	MKQPTPSDFIVNVQENCVSVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDT
Ga0126384_118627432	3300010046	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADP
Ga0126384_121043571	3300010046	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPED
Ga0126384_123823732	3300010046	Tropical Forest Soil	MKHPTPSDFIVNVLENHVSVIFKPSDSYYSFGRLSDP
Ga0126373_132056222	3300010048	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNAREGKTRDTGIY
Ga0134070_103865181	3300010301	Grasslands Soil	MKRPTPSDFTVEAKEAHVSVIFKPSDSHYNFGRLADPEDIARY
Ga0126370_107839193	3300010358	Tropical Forest Soil	MKHPTPSDFIVNVKESHVSVIFKPTNSDYNFGRLADPEDIARFGPLSSPNVRHANTGDTGDYPS
Ga0126370_110091561	3300010358	Tropical Forest Soil	MKHPTPSDFIVEAKEAHVSVLFKPSDSHYSFGRLADPEDIARYGPLSQSPN
Ga0126370_116706051	3300010358	Tropical Forest Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRFS*
Ga0126376_118786391	3300010359	Tropical Forest Soil	VKHPTPSDFIINVEESHVSVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGD
Ga0126376_121884961	3300010359	Tropical Forest Soil	MKQPTPSDFIVNVQENCVSVIFKPSNSEYNFGRLADPADIARYGPLSQSPNV
Ga0126376_129197731	3300010359	Tropical Forest Soil	MKHPTPSDFPVEVKEAYVSVIFKPNDSHYSFGRLADPEDIARYGPLSQPPNVSEGKTGD
Ga0126376_130332232	3300010359	Tropical Forest Soil	MKQPTPSDFIVNVKEGSVSVTFKPNNSDYNFGRLADPG
Ga0126372_118998571	3300010360	Tropical Forest Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGDIARYGPLSQSPNVRHGNTDGTFVGCQGDHHPLTVR*
Ga0126378_130701052	3300010361	Tropical Forest Soil	MKHPTPSDFIINIKESHVSVIFKPSNSDYHFGRLADPEDIARFGPLSSLNVRHG
Ga0126378_131867582	3300010361	Tropical Forest Soil	MKQPTPSDFIVNVKEGSVSVTFKPSNSDYNFGRLADPGDIARYGP
Ga0126378_133164751	3300010361	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPE
Ga0126379_101810011	3300010366	Tropical Forest Soil	MKQPTPSDFIVNIKESSVSVIFKPSNSDYNFVRLADPGDI
Ga0126379_103244493	3300010366	Tropical Forest Soil	MKHPSPSDFIINVEESHVSAIFKPSNSDYYFGRLADPEDI
Ga0126379_118265632	3300010366	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPNDSHYSFGRLADPED
Ga0126379_123150681	3300010366	Tropical Forest Soil	VKHPTPSDFIINVEEGHVSVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNA
Ga0126381_1018911052	3300010376	Tropical Forest Soil	MKHPTPSDFIVNVEESNVSVIFKPSNSYYSFGRLADPDDIARFRSSMSSQ*
Ga0126381_1026315761	3300010376	Tropical Forest Soil	KHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIA*
Ga0126381_1031586251	3300010376	Tropical Forest Soil	MKHPTPSDFIVNVEEGNVSVIFKPSDSYYTFGRLADPEDFARHGPLSRSPNVRRAKTG
Ga0126383_114295833	3300010398	Tropical Forest Soil	MRIIVNVEESNVSVIFKPRDSYYSFGRLADPEDIARFGPLSSPNVRH
Ga0137391_112103792	3300011270	Vadose Zone Soil	MKQPTPSDFIVNVKEGSVSVTFKPSNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTG
Ga0137374_102616421	3300012204	Vadose Zone Soil	MKHPTPSDFTVEAKEAYVSVIFKPTDTHYSFGPLADPEDISRYGPLSRSSNVRHGKTGDT
Ga0137362_112343903	3300012205	Vadose Zone Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSHYNFGRLADPEDIARYGPLSQPPYVR
Ga0137361_119569862	3300012362	Vadose Zone Soil	MKHPTPSDFIVDVQESRVSVLFKPSDSHYSFGRLAD
Ga0137419_114779262	3300012925	Vadose Zone Soil	MKHPTPSDFTVDVTETHVNVIFKPSGRPYSFGRLVDPADIAH*
Ga0137416_115731231	3300012927	Vadose Zone Soil	MKQPTPSDFIVNVKESHVSVIFKPSDSYYNFGRLADPDDIACRGPLSRSPNVR
Ga0126375_110748523	3300012948	Tropical Forest Soil	MKHPTPSDFIVNVQESHVNVIFKPSNSDYYFGRLADPEDIARFGPLS
Ga0126369_109365891	3300012971	Tropical Forest Soil	MKHPTPSDFVVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYGPLSQS
Ga0126369_137128841	3300012971	Tropical Forest Soil	MEQPTPSDFIVNVKESSVSVIFKPSSSDYNFVRLADPEDIA
Ga0182036_100652524	3300016270	Soil	MKHPTPSDFIVNVQESHVSVIFKPSDSYYSFGRLAD
Ga0182036_111922081	3300016270	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLANPEDIARYG
Ga0182041_111034931	3300016294	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRY
Ga0182041_113163502	3300016294	Soil	MKHPTPSDFSINVEEGRVSVIFKPSNTEYYFGRLADPE
Ga0182035_102054373	3300016341	Soil	MKHPTPSDFLVEVKEVHVSVIFKPSDSHYNFGRLADPEDIARYGPLSRSPNVS
Ga0182035_111433851	3300016341	Soil	MKYPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPKDIARFGPLSSPNLRYRDTGDTG
Ga0182035_113210481	3300016341	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGD
Ga0182034_113149163	3300016371	Soil	MKHPTPSDFTVNVQESHVNVIFKPSNSDYYFGRLADPEDI
Ga0182034_120409341	3300016371	Soil	MKHPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDT
Ga0182040_111083152	3300016387	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGK
Ga0182040_117175881	3300016387	Soil	MKYPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTG
Ga0182037_115202861	3300016404	Soil	MKHPTPSDFTVKVEESHVSVIFKPSNGDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYP
Ga0066669_117330731	3300018482	Grasslands Soil	MKHPTPSDFTVEAKEAHVSVTFKPSDSHYNFGRLADPEDIARYGPLSR
Ga0066669_121287751	3300018482	Grasslands Soil	MKHPTPSDFIVKVNESYVNVIFKPTDSDYNFGRLAD
Ga0210381_102007851	3300021078	Groundwater Sediment	MNHPAPSDFTIDVTDTHVNVIFKPSGRPYTFCRLIDPEDLAQYGP
Ga0210400_102604051	3300021170	Soil	MKQPTPSDFIVNVKEGSVSVIFKPSNSNYNFGRLADPEDIARYGPLSRSPNVRH
Ga0213879_101080731	3300021439	Bulk Soil	MKHPTPSDFIVNVKESSVSVIFKPSNSEYNFGRLADPE
Ga0213878_102955151	3300021444	Bulk Soil	MKHPTPSDFLVEVKEAYVSVIFKPNDSHYSFGRLADPEDIARYG
Ga0126371_127096273	3300021560	Tropical Forest Soil	MKHPTPSDFIVKVEESHVRVIFKPSNSDYYFGRLADPKDIARFGPLSSPNVR
Ga0209268_11759602	3300026314	Soil	MKRPTPSDFTVEAKEAHVSVIFKPSDSHYNFGRLADPEDIARYGPL
Ga0209684_10050122	3300027527	Tropical Forest Soil	MKHPTPSDFIVNVEESNVSVIFKPRDSYYSFGRLADPDDIARFRSSMSSQ
Ga0209799_10060743	3300027654	Tropical Forest Soil	MKHPTPSDFIVNVEESNVSVIFKPSDSYYSFGRLADPDDIARFRSSMSSQ
Ga0209465_100824312	3300027874	Tropical Forest Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIA
Ga0318516_108668601	3300031543	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNTDHTFHRLADAEDIARYGPLSQSPNVRHGNTGDTGDY
Ga0318573_100743081	3300031564	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPL
Ga0318515_106473232	3300031572	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKT
Ga0310915_108541571	3300031573	Soil	MKHPTPSDFIVDVQESHVSVLFKPSDSHYSFGRLADPEDIARYGPLLQSPNVRHGNTG
Ga0318542_104635551	3300031668	Soil	MKHPTPSDFTVNVQESHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPN
Ga0318542_105231041	3300031668	Soil	MKHPTPSDFTVNVQESHVNVIFKPSNSDYYFGRLADPED
Ga0318574_102014361	3300031680	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTVIYPS
Ga0318496_106013881	3300031713	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIA
Ga0306917_101646731	3300031719	Soil	MRHPTPSDFIVNVKESHVSVIFKPSDSYYNFGRLADPEDIA
Ga0306917_109219321	3300031719	Soil	MKHPTPSDFIVDVQESHVSVLFKPSDSHYSFGRLADPEDIARYGPLLQS
Ga0318493_107772781	3300031723	Soil	MKHPTPSDCTVNVQESHVNVIFKPSNSDYYFGRLADPED
Ga0318500_102971561	3300031724	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYQDTGDTG
Ga0306918_107022571	3300031744	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLANPE
Ga0318502_104458571	3300031747	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGDI
Ga0318494_100951103	3300031751	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYGPL
Ga0318554_106387443	3300031765	Soil	MKQPTRSDFIVEVKESSVSVIFKPSNTDHTFHRLADAEDIARYGPLSQSPNVRHGNTGDTGDYSPE
Ga0318509_100869131	3300031768	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVR
Ga0318546_104069622	3300031771	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGDIARYGPLSQSPNVRHGNSGDT
Ga0318548_102426481	3300031793	Soil	MKQPTPSDFLVEVKEAYVSVFFKPSDSHYSFGRLADPEDIARYGPLSQSPNVRDGKTGDTGI
Ga0318548_103059812	3300031793	Soil	MRHPTPSDFIVNVKESHVSVIFKPSDSYYNFGRLADPEDIAR
Ga0318557_105881621	3300031795	Soil	MKHPTPSDCTVNVQESHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPN
Ga0318550_100170284	3300031797	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNVRDGKTGDTGIY
Ga0318567_104086322	3300031821	Soil	MKYPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTG
Ga0310917_100294206	3300031833	Soil	MKHPTPSDCTVNVQESHVNVIFKPSNSDYYFGRLADPEDIA
Ga0310917_103820663	3300031833	Soil	MKQPTRSDFIVEVKESSVSVIFKPSNTDHTFHRLADAEDIARYGPLSQSPNVRH
Ga0310917_107412721	3300031833	Soil	MKHPTPSDFLIEVKEAYVSVIFKPSASHYSFGRLADPEDIARYGPLSQSLNV
Ga0318511_106096491	3300031845	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGDIARYGPLSQSPNVRHGNTGDT
Ga0318544_102128101	3300031880	Soil	MKHPTPSDFIVNVQESHVSVIFKPSDSYYSFGRLADPED
Ga0306925_109799582	3300031890	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGP
Ga0318536_103908201	3300031893	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLANPEDIARYGPLSQSPN
Ga0306923_117233613	3300031910	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIA
Ga0306923_119315331	3300031910	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADP
Ga0310912_100543694	3300031941	Soil	MKHPTPSDFLVEVKEAHVSVIFKPRDSHYDFGRLVDPKDIAQFGPLSRSANVGQG
Ga0310910_102759661	3300031946	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYNFGRLADPEDIARYGPLSQSLNVRERKTARQSL
Ga0310909_108775941	3300031947	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTG
Ga0306926_112419971	3300031954	Soil	MKQPTPADFIVEVKESSVSVIFKPSNTDYTFHRLADAEDIARYGPLSRSP
Ga0318559_104687661	3300032039	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSASHYSFGRLADPEDIARYGPLSQ
Ga0318545_101635791	3300032042	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLR
Ga0318558_106375311	3300032044	Soil	MKYPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRD
Ga0318575_105795451	3300032055	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLADPGDIARYGPLSQSPNVR
Ga0318514_106642601	3300032066	Soil	MKHPTPSDFIVNVQESHVSVIFKPSDSYYSFGRLADPE
Ga0306924_103280755	3300032076	Soil	MKHPTPSDFTVNVQESHVNVIFKPSNSDYYFGRLAD
Ga0306924_108313521	3300032076	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYSFGRLA
Ga0306924_125270242	3300032076	Soil	MKHPTPSDFTVKVEESHVSVIFKPSNSDYYFGRLVDPEDIA
Ga0306920_1001619638	3300032261	Soil	MKQPTPSDFIVNVKESSVSVIFKPSNSDYNFVRLANPEDIARYGPLSQSPNV
Ga0306920_1013009701	3300032261	Soil	MKHPTPSDFLVEVKEAYVSVIFKPSDSHYNFGRLYRRCG
Ga0318519_104954651	3300033290	Soil	MKHPTPSDFIVKVEESHVSVIFKPSNSDYYFGRLVDPED

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066245

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences