Metagenome Family F066341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066341
Family Type	Metagenome
Number of Sequences	126
Average Sequence Length	44 residues
Representative Sequence	MATQSWLQDEVAALRKELAAARAELHRLRAIDTQRDPDATLN
Number of Associated Samples	66
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.80 %
% of genes near scaffold ends (potentially truncated)	57.14 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.079 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.714 % of family members)
Environment Ontology (ENVO)	Unclassified (59.524 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.29% β-sheet: 0.00% Coil/Unstructured: 45.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF02518	HATPase_c	23.81
PF04392	ABC_sub_bind	8.73
PF13410	GST_C_2	2.38
PF00903	Glyoxalase	2.38
PF00884	Sulfatase	2.38
PF03401	TctC	1.59
PF00501	AMP-binding	1.59
PF13649	Methyltransf_25	1.59
PF13844	Glyco_transf_41	1.59
PF09948	DUF2182	1.59
PF13185	GAF_2	1.59
PF13481	AAA_25	0.79
PF01588	tRNA_bind	0.79
PF07647	SAM_2	0.79
PF08450	SGL	0.79
PF03404	Mo-co_dimer	0.79
PF00211	Guanylate_cyc	0.79
PF00144	Beta-lactamase	0.79
PF01590	GAF	0.79
PF09265	Cytokin-bind	0.79
PF07676	PD40	0.79
PF10108	DNA_pol_B_exo2	0.79
PF13531	SBP_bac_11	0.79
PF01977	UbiD	0.79
PF10009	DUF2252	0.79
PF13557	Phenol_MetA_deg	0.79
PF12710	HAD	0.79
PF14707	Sulfatase_C	0.79
PF09955	DUF2189	0.79
PF13495	Phage_int_SAM_4	0.79
PF00561	Abhydrolase_1	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	8.73
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.59
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.79
COG0073	tRNA-binding EMAP/Myf domain	Translation, ribosomal structure and biogenesis [J]	0.79
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.79
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.79
COG2517	Predicted RNA-binding protein, contains C-terminal EMAP domain	General function prediction only [R]	0.79
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.79
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.08 %
Unclassified	root	N/A	34.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.08 %
Unclassified	root	N/A	34.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.08 %
Unclassified	root	N/A	34.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.83 %
Unclassified	root	N/A	34.92 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38.10 %
Unclassified	root	N/A	34.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.59 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.59 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.59 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.97 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.59 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.97 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.79 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.79 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.79 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.79 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.97 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.79 %
Desulfobulbaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae	0.79 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.79 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.97 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Bradyrhizobium uaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	0.79 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.79 %
Desulfobulbus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus	0.79 %
Syntrophobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter	0.79 %
Duganella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.97 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
Desulfobulbus alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus alkaliphilus	0.79 %
Duganella phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → Duganella phyllosphaerae	0.79 %
Methylocystis sp. NLS-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. NLS-7	0.79 %
unclassified Syntrophobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → unclassified Syntrophobacter	0.79 %
Bradyrhizobium sp. ORS 278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	0.79 %
Bradyrhizobium uaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.97 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.38 %
Proteobacteria bacterium ST_bin11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1.59 %
Syntrophobacter sp. SbD1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → unclassified Syntrophobacter → Syntrophobacter sp. SbD1	0.79 %
Desulfobulbus alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus alkaliphilus	0.79 %
Duganella phyllosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → Duganella phyllosphaerae	0.79 %
Methylocystis sp. NLS-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. NLS-7	0.79 %
Bradyrhizobium sp. ORS 278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	0.79 %
Bradyrhizobium uaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000893\|AP72_2010_repI_A001DRAFT_1020667	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300004633\|Ga0066395_10018560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2727	Open in IMG/M
3300005332\|Ga0066388_100599661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1724	Open in IMG/M
3300005332\|Ga0066388_100677977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1641	Open in IMG/M
3300005332\|Ga0066388_101643306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1133	Open in IMG/M
3300005332\|Ga0066388_101870412	Not Available	1070	Open in IMG/M
3300005332\|Ga0066388_102336017	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300005332\|Ga0066388_102621558	Not Available	918	Open in IMG/M
3300005332\|Ga0066388_105439555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	645	Open in IMG/M
3300005332\|Ga0066388_106430549	Not Available	592	Open in IMG/M
3300005713\|Ga0066905_100032465	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → unclassified Syntrophobacter → Syntrophobacter sp. SbD1	2982	Open in IMG/M
3300005713\|Ga0066905_100234877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1397	Open in IMG/M
3300005713\|Ga0066905_100265055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1329	Open in IMG/M
3300005713\|Ga0066905_100957260	Not Available	752	Open in IMG/M
3300005764\|Ga0066903_100168041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3200	Open in IMG/M
3300005764\|Ga0066903_100254480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2715	Open in IMG/M
3300005764\|Ga0066903_100446077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	2159	Open in IMG/M
3300005764\|Ga0066903_101558993	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300005764\|Ga0066903_102239573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1054	Open in IMG/M
3300005764\|Ga0066903_103131117	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300005764\|Ga0066903_103372560	Not Available	862	Open in IMG/M
3300005764\|Ga0066903_104192515	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005764\|Ga0066903_104830275	Not Available	716	Open in IMG/M
3300005764\|Ga0066903_105163202	Not Available	691	Open in IMG/M
3300005764\|Ga0066903_105675140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300005764\|Ga0066903_108258416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300010046\|Ga0126384_11100998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	728	Open in IMG/M
3300010047\|Ga0126382_11180613	Not Available	684	Open in IMG/M
3300010047\|Ga0126382_11524931	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010047\|Ga0126382_12123702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	538	Open in IMG/M
3300010358\|Ga0126370_10276239	Not Available	1318	Open in IMG/M
3300010358\|Ga0126370_10279155	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300010359\|Ga0126376_12163174	Not Available	601	Open in IMG/M
3300010360\|Ga0126372_11700461	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300010361\|Ga0126378_10854127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300010366\|Ga0126379_10151993	All Organisms → cellular organisms → Bacteria → Proteobacteria	2159	Open in IMG/M
3300010376\|Ga0126381_100785090	Not Available	1367	Open in IMG/M
3300010376\|Ga0126381_101160906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1116	Open in IMG/M
3300010376\|Ga0126381_101549366	Not Available	958	Open in IMG/M
3300010376\|Ga0126381_103964871	Not Available	576	Open in IMG/M
3300010398\|Ga0126383_11417060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300010398\|Ga0126383_11846822	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	692	Open in IMG/M
3300010863\|Ga0124850_1037434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	1547	Open in IMG/M
3300012948\|Ga0126375_12107416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. NLS-7	501	Open in IMG/M
3300012971\|Ga0126369_10193310	Not Available	1956	Open in IMG/M
3300012971\|Ga0126369_10336706	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium ST_bin11	1525	Open in IMG/M
3300012971\|Ga0126369_10378590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1446	Open in IMG/M
3300012971\|Ga0126369_11712482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300016270\|Ga0182036_11731131	Not Available	528	Open in IMG/M
3300016270\|Ga0182036_11778319	Not Available	521	Open in IMG/M
3300016341\|Ga0182035_10316995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1284	Open in IMG/M
3300016357\|Ga0182032_10977918	Not Available	722	Open in IMG/M
3300016371\|Ga0182034_10818735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	798	Open in IMG/M
3300016371\|Ga0182034_11414674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	608	Open in IMG/M
3300016404\|Ga0182037_10344379	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300016422\|Ga0182039_12000564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300016445\|Ga0182038_10826087	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300021560\|Ga0126371_10643736	Not Available	1209	Open in IMG/M
3300021560\|Ga0126371_10962082	Not Available	996	Open in IMG/M
3300027874\|Ga0209465_10023359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2865	Open in IMG/M
3300031543\|Ga0318516_10006065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5555	Open in IMG/M
3300031543\|Ga0318516_10777698	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300031545\|Ga0318541_10106056	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300031545\|Ga0318541_10380019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300031545\|Ga0318541_10477393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300031545\|Ga0318541_10558433	Not Available	640	Open in IMG/M
3300031573\|Ga0310915_10698225	Not Available	716	Open in IMG/M
3300031573\|Ga0310915_10784798	Not Available	670	Open in IMG/M
3300031573\|Ga0310915_10836802	Not Available	646	Open in IMG/M
3300031668\|Ga0318542_10333463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	779	Open in IMG/M
3300031679\|Ga0318561_10484533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	681	Open in IMG/M
3300031679\|Ga0318561_10582334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	616	Open in IMG/M
3300031680\|Ga0318574_10759771	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031682\|Ga0318560_10650626	Not Available	570	Open in IMG/M
3300031719\|Ga0306917_10817729	Not Available	730	Open in IMG/M
3300031736\|Ga0318501_10526794	Not Available	646	Open in IMG/M
3300031744\|Ga0306918_10871094	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031747\|Ga0318502_10401281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	815	Open in IMG/M
3300031747\|Ga0318502_10581124	Not Available	674	Open in IMG/M
3300031747\|Ga0318502_10822471	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031751\|Ga0318494_10417301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	779	Open in IMG/M
3300031771\|Ga0318546_11170078	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031780\|Ga0318508_1174790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300031782\|Ga0318552_10322047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	787	Open in IMG/M
3300031792\|Ga0318529_10418195	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300031795\|Ga0318557_10148827	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300031819\|Ga0318568_10711340	Not Available	624	Open in IMG/M
3300031832\|Ga0318499_10328465	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300031879\|Ga0306919_11022479	Not Available	631	Open in IMG/M
3300031879\|Ga0306919_11233397	Not Available	567	Open in IMG/M
3300031879\|Ga0306919_11524024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300031890\|Ga0306925_10387642	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300031890\|Ga0306925_10626412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300031890\|Ga0306925_10869861	Not Available	929	Open in IMG/M
3300031897\|Ga0318520_10153980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1334	Open in IMG/M
3300031897\|Ga0318520_11008533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Duganella → Duganella phyllosphaerae	526	Open in IMG/M
3300031910\|Ga0306923_10041379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5036	Open in IMG/M
3300031910\|Ga0306923_10277293	Not Available	1917	Open in IMG/M
3300031910\|Ga0306923_10315704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1784	Open in IMG/M
3300031910\|Ga0306923_10634236	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300031912\|Ga0306921_11983009	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031942\|Ga0310916_11656941	Not Available	518	Open in IMG/M
3300031947\|Ga0310909_10057107	All Organisms → cellular organisms → Bacteria → Proteobacteria	3019	Open in IMG/M
3300031954\|Ga0306926_11452271	Not Available	793	Open in IMG/M
3300031954\|Ga0306926_12392889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300031954\|Ga0306926_12821287	Not Available	524	Open in IMG/M
3300031954\|Ga0306926_12896865	Not Available	515	Open in IMG/M
3300032025\|Ga0318507_10405541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300032035\|Ga0310911_10516643	Not Available	692	Open in IMG/M
3300032044\|Ga0318558_10022447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2573	Open in IMG/M
3300032059\|Ga0318533_10760809	Not Available	711	Open in IMG/M
3300032065\|Ga0318513_10594269	Not Available	542	Open in IMG/M
3300032065\|Ga0318513_10655655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300032076\|Ga0306924_11124172	Not Available	855	Open in IMG/M
3300032089\|Ga0318525_10210884	Not Available	998	Open in IMG/M
3300032090\|Ga0318518_10196583	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Desulfobulbus → Desulfobulbus alkaliphilus	1032	Open in IMG/M
3300032090\|Ga0318518_10643878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	540	Open in IMG/M
3300032090\|Ga0318518_10727885	Not Available	504	Open in IMG/M
3300032091\|Ga0318577_10043172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1998	Open in IMG/M
3300032094\|Ga0318540_10085263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1469	Open in IMG/M
3300032261\|Ga0306920_100647202	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300032261\|Ga0306920_103808847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	551	Open in IMG/M
3300033289\|Ga0310914_10387006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1265	Open in IMG/M
3300033289\|Ga0310914_11579913	Not Available	559	Open in IMG/M
3300033290\|Ga0318519_11009707	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.57%
Loam	Environmental → Terrestrial → Soil → Loam	21.43%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.32%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.25%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	21.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A001DRAFT_10206672	3300000893	Forest Soil	LMATQSWLQDEVAELRKELAAARAELHRLRAAQRDPDATLN*
Ga0066395_100185602	3300004633	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRKELAAARAELHRLRAIDTQRDPDATLN*
Ga0066388_1005996612	3300005332	Tropical Forest Soil	MATQSWLEDEVAKLRKELAAARAELDRLRAIDTQRDPNATLN*
Ga0066388_1006779772	3300005332	Tropical Forest Soil	MQSWLQDEVAELRKELAAARAVLHRLRAIDGAAKTERDPEAPLN*
Ga0066388_1016433062	3300005332	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRRELAAARAELHRLRAIDTQRDPDATLN*
Ga0066388_1018704122	3300005332	Tropical Forest Soil	MATQSWLQDDVAKLRKELAAARAELHGLRAIDTQRDPHASLN*
Ga0066388_1023360173	3300005332	Tropical Forest Soil	QCRAELMATQSWLRDEVAELGKELAAARAELHRLRAAQSYPDGTLN*
Ga0066388_1026215582	3300005332	Tropical Forest Soil	MATHSWLEDEVAKLRKELAAARAELRRLRAVAETQRDPDAHLN*
Ga0066388_1054395552	3300005332	Tropical Forest Soil	MATQSLLQDEVAKSRKELAAARAELHRLRVTQRDPDTTLK*
Ga0066388_1064305491	3300005332	Tropical Forest Soil	MFDTCRAELMATQSWLEDEVAKLRNELAAARAELHRLRAIDTKRD
Ga0066905_1000324651	3300005713	Tropical Forest Soil	MATQSWLQDEVAALRKELAAARAELHRLRAIDTQRDPDATLN*
Ga0066905_1002348772	3300005713	Tropical Forest Soil	RRRWLQDEVAELRKELAAARAEFDRLRAIDTQRDPDATLN*
Ga0066905_1002650552	3300005713	Tropical Forest Soil	MATQSWLEDEVAKLRKELAAARAELHRLRAVAETQRDPDATLN*
Ga0066905_1009572601	3300005713	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRKELAAARAELHRLRAAQRDPDATLN*
Ga0066903_1001680412	3300005764	Tropical Forest Soil	LLREEIIELRKELAAARPELHRLRAVAQTQRDPDTTLN*
Ga0066903_1002544802	3300005764	Tropical Forest Soil	VPELMATQSWLEDEVAELRNELAAARAELHRLRAIDTQRDPDATLN*
Ga0066903_1004460772	3300005764	Tropical Forest Soil	MATQSWLRDEVAELRKELAAARAELHRLRAIDTQRGPDATLN*
Ga0066903_1015589933	3300005764	Tropical Forest Soil	ILQSGPGWWDRMQFDRLRRRWLQDEVAELRKELAAARAELHRLRAAANSRRDPDATLN*
Ga0066903_1022395731	3300005764	Tropical Forest Soil	RLRRRWLQDEVAELRKELAAARAELHRLRAIDTQRDPDATLN*
Ga0066903_1031311172	3300005764	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRKELAAARAESDRLRAIDTNAIPTRL*
Ga0066903_1033725602	3300005764	Tropical Forest Soil	MATQSWLQDEVAKLRKELAAARAELHRLRAAAKAQRDPDATLN*
Ga0066903_1041925151	3300005764	Tropical Forest Soil	IRQCRAELMATQSWLRDEVAELRKELAAARAELHRLRATQRDPDETLN*
Ga0066903_1048302752	3300005764	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRKELAAARAELHRLRAIDTKRDPDATLN*
Ga0066903_1051632022	3300005764	Tropical Forest Soil	MAAAMQSWLQDEVAELRKELAAARAQLDRLRAAAKPQRDKRTS*
Ga0066903_1056751403	3300005764	Tropical Forest Soil	MATQSWLEDEVAKLRNELAAARAELHRLRAIDTKRDPDATLN*
Ga0066903_1082584162	3300005764	Tropical Forest Soil	AELMATQSWLEDEVAKLRNELAAARAELHRLRAIDTKRDPDATLN*
Ga0126384_111009982	3300010046	Tropical Forest Soil	MQFDRLRRRWLQDEVAELRKELAAARAELHRLRTVQRDPDARLN*
Ga0126382_111806132	3300010047	Tropical Forest Soil	MATQSWLEDEVAKLRKELAAARAELHRLRGAAKAQRDPDATPN*
Ga0126382_115249312	3300010047	Tropical Forest Soil	LRRRWLQDEVAELRRELAAARAELHRLRAIDTQRDPDATLN*
Ga0126382_121237022	3300010047	Tropical Forest Soil	RWPKLRKELAAARAELRRLRAVAEMPRDPDATLN*
Ga0126370_102762391	3300010358	Tropical Forest Soil	AVHLCRAELLATQSWLEDEVAELRKELAVARAELHRLRAAAKTQRDKRTS*
Ga0126370_102791551	3300010358	Tropical Forest Soil	MFDTCRAELMATQSWLEDEVAKLRKELAAARAELHRLCAIDTKRDPDATLN*
Ga0126376_121631741	3300010359	Tropical Forest Soil	MATQSWLEDEVAELRKQLAAARAELHRLRAAQSDLDATLN*
Ga0126372_117004611	3300010360	Tropical Forest Soil	GDRMQFDRLRRRWLQDEVAELRRELAAARAELHRLRAIDTQRDPDATLN*
Ga0126378_108541272	3300010361	Tropical Forest Soil	MQFDRLRRRWLRDEVAELRKELAAARAELHRLRAIDTQRDPDATLN*
Ga0126379_101519933	3300010366	Tropical Forest Soil	VPRELMATQSWLRDEVAELRKELAAARAELHRLRAVAETQRDPDAPLN*
Ga0126381_1007850902	3300010376	Tropical Forest Soil	WWDRMQFDRSRRRWLQDEVAKLRRELAAARAELNRLRAIEGAAKTERDPDATLN*
Ga0126381_1011609061	3300010376	Tropical Forest Soil	VPRGTDGPQSWLEDEVAKLRKELAAARAELHRLCAIDTKRDPDATLN*
Ga0126381_1015493663	3300010376	Tropical Forest Soil	MATQSWLEDEVAELRKQLAAARAELHRLRAAQCDLDATLN*
Ga0126381_1039648711	3300010376	Tropical Forest Soil	RMQFDRLRRRWLQDEVAKLRRELAAARAEFDPLRAIDTQRDPDSTLN*
Ga0126383_114170602	3300010398	Tropical Forest Soil	MAMQSWLQDEVVELRKELAAACAELHRLRAAQRDPDATLN*
Ga0126383_118468222	3300010398	Tropical Forest Soil	QSGPGWWDRMQFDRLRRRWLQDEVAKLRRELAAARAEFDPLRAIDTQRDPDSTLN*
Ga0124850_10374342	3300010863	Tropical Forest Soil	ALAGGDRMQFDRLRRRWLQDEVAELRKELAAARAELHRLRAIDTQRDPDATLN*
Ga0126375_121074161	3300012948	Tropical Forest Soil	MATQSWLEDEVAELRKELAAARAELRRLRAVAETPRDPDATLN*
Ga0126369_101933101	3300012971	Tropical Forest Soil	QCRAELMATQSWLEDEVAALRKELAAARAELHRLRAAQRDPDATLN*
Ga0126369_103367061	3300012971	Tropical Forest Soil	ILQSGPGWWDRMQFDRLRRRWLQDEVAKLRRELAAARAEFDPLRAIDTQRDPDSTLN*
Ga0126369_103785901	3300012971	Tropical Forest Soil	RWLQDEVAELRKELAAARAELERLRGIDRAAKTQCDLDATLN*
Ga0126369_117124822	3300012971	Tropical Forest Soil	WLQDEVAELRKELAAARAQLDRLRAIDTQRDPNATLN*
Ga0182036_117311312	3300016270	Soil	MATTSWLQDEVAALRKELAAARVELQHLRAIDCAAKMQRDPDATPKRGLYLLSR
Ga0182036_117783192	3300016270	Soil	RQAGVERRWLQDEVAELRKELAAARAEFDRLRAIDTQRDRDATLN
Ga0182035_103169953	3300016341	Soil	AELMATQSWLEDEVAKLRKELAAARAELHRLRAIDTKRDPDTTLN
Ga0182032_109779181	3300016357	Soil	LATQSWLQDEVAALRKELAAARAELHRLRATQRDPDATLN
Ga0182034_108187352	3300016371	Soil	MATTSWLQDEVAALRKELAAARVELQHLRAIDCAAKMQRDPDATPNRGLYLLRR
Ga0182034_114146741	3300016371	Soil	LQDEVAELRKELAAARAELHRLRAIDCAAITQRDPEATLN
Ga0182037_103443792	3300016404	Soil	MATQTWLQDEVAELRKELAAACAELHRLRAAQRLPNATLN
Ga0182039_117880471	3300016422	Soil	ELMATESWLQDEVAELRKELAAARAELHRLRATAKTQ
Ga0182039_120005641	3300016422	Soil	RLRRRWLQDEVAELRKELAAARAELHRLRAIDTQRDPDATLN
Ga0182038_108260872	3300016445	Soil	VRQCRAELMATQSWLRGEVAELRKELAAARAELERLRAAQRDPDATLN
Ga0126371_106437363	3300021560	Tropical Forest Soil	MATQSWLQDEVAKLRKELAAARAELRRLRAVAETQRDPDAHLN
Ga0126371_109620821	3300021560	Tropical Forest Soil	MFDTCCAELMATQSWLEDEVAKLRNELAAARAELHRLRAIDTKRDPDATLN
Ga0209465_100233592	3300027874	Tropical Forest Soil	MATHSWLEDEVAKLRKELAAARAELRRLRAVAETQRDPDAHLN
Ga0318516_100060655	3300031543	Soil	MATQSWLEDEVAELRKELAAARAELHRLRAIDCAAKTQRDPDATLN
Ga0318516_107776982	3300031543	Soil	MATQSWLQDEVAELRKELAGARAELERLRATQRNPDATLN
Ga0318541_101060562	3300031545	Soil	MQFDRLRRRWLQEEVAELRKELAAACAELHRLRAIDTQRDPDATLN
Ga0318541_103800192	3300031545	Soil	MQFDRLRRRWLRDEVAALRKELAAARAELDRLRAIDTQRDPDAALN
Ga0318541_104773932	3300031545	Soil	MAAAMQSWLQHKVAELRKELAAARAELHRLRAIDTKRYPDATLN
Ga0318541_105584332	3300031545	Soil	RWLQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0310915_106982251	3300031573	Soil	MQVDRLRRRWLQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0310915_107847981	3300031573	Soil	MRAELMATQSWLQDEVAALRKELAAARAELHRLRANDCAAKTQREPDAPLN
Ga0310915_108368022	3300031573	Soil	LRQCRAELMATQSWLEDEVAELRRELAAARAELERLRAVDTQRDPDATLN
Ga0318542_103334632	3300031668	Soil	QCRAELIATQSCLQDEVAELRKELAAARAELRRLRATQRDPAAT
Ga0318561_104845332	3300031679	Soil	TQSWLQDEVAELRKELAAARAELRRLRATQRDPAAT
Ga0318561_105823341	3300031679	Soil	DEVAELRRELAAARAELRRLRAVADLRRDPDATLN
Ga0318574_107597712	3300031680	Soil	MATQSWLEDEVAKLRKELAAARAELHRLRAAQSDPDATLN
Ga0318560_106506262	3300031682	Soil	DPLRRRWLQDEVAELRKELAAARAELRGLRATQRDPDATLN
Ga0306917_108177292	3300031719	Soil	LRRRWLQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0318501_105267941	3300031736	Soil	RAELMATQSWLQDEVAELRKELAAARAELHRLRAKTQRDPDASLN
Ga0306918_108710942	3300031744	Soil	LMATQSWLEDEVAKLRKELAAARAELHRLRAAQSDPDATLN
Ga0318502_104012811	3300031747	Soil	MATQSWLQHEVAALHKELAAARAELERLRATQRDPDATLN
Ga0318502_105811242	3300031747	Soil	VPRGTDGPQSWLEDEVAKLRKELAAARAELHRLRAIDTKRDPDTTLN
Ga0318502_108224712	3300031747	Soil	ATQSWLENEVAELGKELAAAHAELHRLHANDCAAKTQRDPDATLN
Ga0318494_104173011	3300031751	Soil	ELMATQSWLEDELAKLRKELAAARAELHRLRAIGCAAKTQRDPEATLN
Ga0318546_111700781	3300031771	Soil	LQDEVAELRKELAAARAELHRLRAAANSRRDPDATLN
Ga0318508_11747902	3300031780	Soil	MATQSWLQDEVAELRKELAGARAELERLRATQRDPDATLT
Ga0318552_103220472	3300031782	Soil	RWATQSWLQVEVAELRKELAAARAELRRLRATQRDPAAT
Ga0318529_104181951	3300031792	Soil	WLEDEVAKLRKELAAARAELHRLRAAQSDPDATLN
Ga0318557_101488272	3300031795	Soil	AELIATQTWLQDEVATLRKGLAAARAELDRLRAIDKQRDPDATLN
Ga0318568_107113401	3300031819	Soil	LAVRQCRAELMATQSWLENEVAELGKELAAAHAELHRLHANDTQRDSDATLN
Ga0318499_103284652	3300031832	Soil	CRAELMATQSWLENEVAELGKELAAAHAELHRLHANDCAAKTQRDPDATLN
Ga0306919_110224792	3300031879	Soil	RAELMATQSWLQDEVAELRSELATARAELHRLRGIDGAAKTQRDLDATLN
Ga0306919_112333972	3300031879	Soil	PRPAPRMQFDRLRRRWLQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0306919_115240242	3300031879	Soil	TIANSISCNPALAGGDRMQFDRLRRRWLQDEVAELRKELAAARAELHRLRAIDTQRDPDATLN
Ga0306925_103876423	3300031890	Soil	MATQSWLENEVAELGKELAAAHAELHRLHANDTQRDSDATLN
Ga0306925_106264121	3300031890	Soil	MQFDRLRRRWLQDEVAELRRELAAARAELHRLRAIDTQRDRDATLN
Ga0306925_108698611	3300031890	Soil	LLQDEVAELRTELAAARAELHRLRATAKMQRDLDATLN
Ga0318520_101539801	3300031897	Soil	RAELMATQSWLEDELAKLRKELAAARAELHRLRAIGCAAKTQRDPEATLN
Ga0318520_110085332	3300031897	Soil	DARAELMATQSWLQDEVAELRKELAGARAELERLRATQRNPDATLN
Ga0306923_100413792	3300031910	Soil	LIATQSWLRDEVAELRKELAAARAELDRLRAIDSKRDPDATLN
Ga0306923_102772931	3300031910	Soil	ELIATQSWLQDEVAELRNELAAARAELERLRATQRDPDATLT
Ga0306923_103157042	3300031910	Soil	MQFDRLRRRWLQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0306923_106342363	3300031910	Soil	SSRRWLRDEVAELRKKLAAARAELHRLTQRDADATLN
Ga0306921_119830091	3300031912	Soil	RQCRAELMATQSWLENEVAELGKELAAAHAELHRLHANDCAAKTQRDPDATLN
Ga0310916_116569411	3300031942	Soil	PTNPTSCNTALAGGDRMQFDRLRRRWLQDEVAELRRELAAARAELHRLRAIDTQRDRDATLN
Ga0310909_100571074	3300031947	Soil	MAAAMQGWLQHKVAELRKELAAARAELHRLRAIDTKRYPDATLN
Ga0306926_114522713	3300031954	Soil	MATQSRLRGEVAELRKELAAARAELHRLRATQSDPDSSIGPFVALAR
Ga0306926_123928891	3300031954	Soil	YRRQAGVERRWLQDEVAELRKELAAARAEFDRLRAIDTQRDPDATLN
Ga0306926_128212871	3300031954	Soil	LMATQSWLQDEVAELRKELAAARAELHRLRAVAETQRDKRTS
Ga0306926_128968652	3300031954	Soil	MCAELMATQSWLQHELAELRKELVAACAELRRLGATAKARHDPDATLN
Ga0318507_104055411	3300032025	Soil	RQCRAELIATQRWLEDEVAELRKELAASRTELHRLRAAQRDPDATLN
Ga0310911_105166431	3300032035	Soil	MATQSWLEDEVAELRRELAAARAELRRLRAIDCAAKTQRDPNATLN
Ga0318558_100224473	3300032044	Soil	TQTWLRDEVAALRRELAAARAELRRLRAAQRDPDATLN
Ga0318533_107608092	3300032059	Soil	QSCRQDEVAELRKELAAARAELRRLRATQRDPDATLN
Ga0318513_105942691	3300032065	Soil	LRDEVAELRKELAAARAELDRLRAIDSKRDPDATLN
Ga0318513_106556551	3300032065	Soil	RQCRAELMATQSWLRDEVAGLRKELAAARAELHRLRATQSDPDATLN
Ga0306924_111241721	3300032076	Soil	VRQCRVELIATEKWLQDEVAELRKELAAARAELDRLRAARRDLDATLN
Ga0318525_102108842	3300032089	Soil	TWLRDEVAALRRELAAARAELRRLRAAQRDPDATLN
Ga0318518_101965831	3300032090	Soil	LLQDEVAELRTELAAARAELHRLRATAKMQRDLDA
Ga0318518_106438781	3300032090	Soil	QSWLRDEVAELRKELAAARAELEHLHAINCAAKTQRGPEATLNKV
Ga0318518_107278852	3300032090	Soil	ATHSWLEDELAKLRKELAAARAELHRLRAIGCAAKTQRDPEATLN
Ga0318577_100431723	3300032091	Soil	TQSWLEDELAKLRKELAAARAELHRLRAIGCAAKTQRDPEATLN
Ga0318540_100852633	3300032094	Soil	IRQCRAELMATQSWLRDEVAELRKELAAARAELQRLRATQRDPDATLN
Ga0306920_1006472022	3300032261	Soil	MATQTWLRDEVAKLRKELAAARAELRRLRAIDTKRDPDATLN
Ga0306920_1038088471	3300032261	Soil	MQFDRLRRRWLQDEVAELRKELAAARAELHRLRAAANSRRDPDATLN
Ga0310914_103870061	3300033289	Soil	WLEDELAKLRKELAAARAELHRLRAIGCAAKTQRDPEATLN
Ga0310914_115799131	3300033289	Soil	EVAALRKELAAARAELHRLRANDCAAKTQREPDAPLN
Ga0318519_110097071	3300033290	Soil	DEVAELRKELAAARAELHRLRAAANSRRDPDATLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066341

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences