NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F066369

Metagenome / Metatranscriptome Family F066369

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F066369
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 41 residues
Representative Sequence GQVQQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPKM
Number of Associated Samples 81
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.60 %
% of genes near scaffold ends (potentially truncated) 90.48 %
% of genes from short scaffolds (< 2000 bps) 99.21 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.032 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(51.587 % of family members)
Environment Ontology (ENVO) Unclassified
(89.683 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(87.302 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.88%    β-sheet: 0.00%    Coil/Unstructured: 68.12%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.03 %
All OrganismsrootAll Organisms3.97 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005331|Ga0070670_101612284Not Available597Open in IMG/M
3300005335|Ga0070666_10697224Not Available744Open in IMG/M
3300005544|Ga0070686_100373370Not Available1078Open in IMG/M
3300009553|Ga0105249_11035122Not Available890Open in IMG/M
3300009995|Ga0105139_1003119All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Pasteurella → Pasteurella testudinis → Pasteurella testudinis DSM 230721645Open in IMG/M
3300010276|Ga0134104_1050455Not Available832Open in IMG/M
3300010371|Ga0134125_11691950Not Available688Open in IMG/M
3300010400|Ga0134122_12996575Not Available526Open in IMG/M
3300010401|Ga0134121_11217176Not Available754Open in IMG/M
3300010401|Ga0134121_12290691Not Available579Open in IMG/M
3300015290|Ga0182105_1030014Not Available773Open in IMG/M
3300015297|Ga0182104_1084465Not Available573Open in IMG/M
3300015297|Ga0182104_1105701Not Available528Open in IMG/M
3300015301|Ga0182184_1064972Not Available587Open in IMG/M
3300015306|Ga0182180_1073665Not Available551Open in IMG/M
3300015311|Ga0182182_1102135Not Available538Open in IMG/M
3300015312|Ga0182168_1031596Not Available854Open in IMG/M
3300015312|Ga0182168_1080220Not Available620Open in IMG/M
3300015312|Ga0182168_1085790Not Available605Open in IMG/M
3300015313|Ga0182164_1099010Not Available572Open in IMG/M
3300015317|Ga0182136_1039456Not Available800Open in IMG/M
3300015317|Ga0182136_1073454Not Available646Open in IMG/M
3300015320|Ga0182165_1038094Not Available831Open in IMG/M
3300015320|Ga0182165_1049955Not Available758Open in IMG/M
3300015325|Ga0182148_1135932Not Available517Open in IMG/M
3300015326|Ga0182166_1054693Not Available720Open in IMG/M
3300015326|Ga0182166_1072370Not Available654Open in IMG/M
3300015327|Ga0182114_1149907Not Available520Open in IMG/M
3300015329|Ga0182135_1134857Not Available532Open in IMG/M
3300015330|Ga0182152_1036981Not Available857Open in IMG/M
3300015330|Ga0182152_1089440Not Available626Open in IMG/M
3300015330|Ga0182152_1115338Not Available567Open in IMG/M
3300015333|Ga0182147_1008303All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum1401Open in IMG/M
3300015334|Ga0182132_1115638Not Available591Open in IMG/M
3300015335|Ga0182116_1065251Not Available766Open in IMG/M
3300015336|Ga0182150_1100943Not Available616Open in IMG/M
3300015336|Ga0182150_1142825Not Available536Open in IMG/M
3300015336|Ga0182150_1164617Not Available504Open in IMG/M
3300015337|Ga0182151_1017955Not Available1104Open in IMG/M
3300015337|Ga0182151_1094880Not Available631Open in IMG/M
3300015339|Ga0182149_1025695Not Available1029Open in IMG/M
3300015339|Ga0182149_1072849Not Available716Open in IMG/M
3300015339|Ga0182149_1131640Not Available566Open in IMG/M
3300015340|Ga0182133_1035213Not Available975Open in IMG/M
3300015340|Ga0182133_1128561Not Available599Open in IMG/M
3300015348|Ga0182115_1158960Not Available724Open in IMG/M
3300015348|Ga0182115_1277055Not Available531Open in IMG/M
3300015349|Ga0182185_1060879Not Available1018Open in IMG/M
3300015349|Ga0182185_1146687Not Available701Open in IMG/M
3300015349|Ga0182185_1195516Not Available611Open in IMG/M
3300015349|Ga0182185_1264134Not Available525Open in IMG/M
3300015350|Ga0182163_1063472Not Available1070Open in IMG/M
3300015350|Ga0182163_1063472Not Available1070Open in IMG/M
3300015350|Ga0182163_1240018Not Available568Open in IMG/M
3300015350|Ga0182163_1279037Not Available523Open in IMG/M
3300015352|Ga0182169_1253240Not Available572Open in IMG/M
3300015353|Ga0182179_1203612Not Available631Open in IMG/M
3300015353|Ga0182179_1240296Not Available583Open in IMG/M
3300015354|Ga0182167_1156943Not Available839Open in IMG/M
3300015354|Ga0182167_1352064Not Available514Open in IMG/M
3300017412|Ga0182199_1031936All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum991Open in IMG/M
3300017412|Ga0182199_1139278Not Available586Open in IMG/M
3300017414|Ga0182195_1104908All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum679Open in IMG/M
3300017422|Ga0182201_1045798Not Available743Open in IMG/M
3300017435|Ga0182194_1110577Not Available570Open in IMG/M
3300017440|Ga0182214_1105553Not Available603Open in IMG/M
3300017445|Ga0182198_1101063Not Available659Open in IMG/M
3300017693|Ga0182216_1109203Not Available670Open in IMG/M
3300017693|Ga0182216_1134996Not Available617Open in IMG/M
3300020023|Ga0182178_1009635Not Available676Open in IMG/M
3300020023|Ga0182178_1013345Not Available606Open in IMG/M
3300020023|Ga0182178_1017347Not Available554Open in IMG/M
3300025903|Ga0207680_10951799Not Available615Open in IMG/M
3300025925|Ga0207650_11329158Not Available612Open in IMG/M
3300025931|Ga0207644_10895440Not Available744Open in IMG/M
3300026035|Ga0207703_10625204Not Available1020Open in IMG/M
3300026035|Ga0207703_11022053Not Available793Open in IMG/M
3300028050|Ga0268328_1045522Not Available595Open in IMG/M
3300028051|Ga0268344_1001525All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum1180Open in IMG/M
3300028053|Ga0268346_1034827Not Available545Open in IMG/M
3300028054|Ga0268306_1016875Not Available638Open in IMG/M
3300028056|Ga0268330_1021010Not Available736Open in IMG/M
3300028056|Ga0268330_1021195Not Available734Open in IMG/M
3300028056|Ga0268330_1049436Not Available548Open in IMG/M
3300028056|Ga0268330_1054753Not Available528Open in IMG/M
3300028056|Ga0268330_1057311Not Available519Open in IMG/M
3300028057|Ga0268352_1029426Not Available600Open in IMG/M
3300028058|Ga0268332_1037419Not Available661Open in IMG/M
3300028058|Ga0268332_1079228Not Available502Open in IMG/M
3300028061|Ga0268314_1003226Not Available1284Open in IMG/M
3300028062|Ga0268342_1004191Not Available1075Open in IMG/M
3300028062|Ga0268342_1004191Not Available1075Open in IMG/M
3300028139|Ga0268355_1003869Not Available809Open in IMG/M
3300028142|Ga0268347_1002120Not Available1138Open in IMG/M
3300028143|Ga0268348_1003173Not Available956Open in IMG/M
3300028143|Ga0268348_1016098Not Available585Open in IMG/M
3300028143|Ga0268348_1020436Not Available544Open in IMG/M
3300028144|Ga0268345_1003107Not Available951Open in IMG/M
3300028144|Ga0268345_1009240Not Available709Open in IMG/M
3300028147|Ga0268303_104946Not Available572Open in IMG/M
3300028151|Ga0268308_1012741Not Available688Open in IMG/M
3300028151|Ga0268308_1017450Not Available623Open in IMG/M
3300028151|Ga0268308_1027510Not Available538Open in IMG/M
3300028151|Ga0268308_1031432Not Available515Open in IMG/M
3300028152|Ga0268336_1031527Not Available500Open in IMG/M
3300028153|Ga0268320_1003588Not Available922Open in IMG/M
3300028153|Ga0268320_1006292Not Available790Open in IMG/M
3300028153|Ga0268320_1028913Not Available510Open in IMG/M
3300028248|Ga0268312_1023582Not Available589Open in IMG/M
3300028253|Ga0268316_1002087Not Available1019Open in IMG/M
3300028256|Ga0268304_1006941Not Available647Open in IMG/M
3300028262|Ga0268310_1001040Not Available1691Open in IMG/M
3300028262|Ga0268310_1011100Not Available829Open in IMG/M
3300028468|Ga0268317_1006923Not Available607Open in IMG/M
3300028470|Ga0268307_1000643Not Available1405Open in IMG/M
3300028472|Ga0268315_1006964Not Available763Open in IMG/M
3300028473|Ga0268319_1017261Not Available561Open in IMG/M
3300028474|Ga0268331_1011549Not Available663Open in IMG/M
3300028476|Ga0268329_1015297Not Available615Open in IMG/M
3300028476|Ga0268329_1021277Not Available558Open in IMG/M
3300028477|Ga0268309_1005222Not Available751Open in IMG/M
3300028523|Ga0268313_1000518Not Available1438Open in IMG/M
3300028529|Ga0268311_1007445Not Available769Open in IMG/M
3300032590|Ga0214489_1065823Not Available535Open in IMG/M
3300033534|Ga0314757_1128699Not Available610Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere51.59%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere36.51%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.59%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated0.79%
Switchgrass DegradingEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010276Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 15_59_3.3_214_A2 metaGEngineeredOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028051Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028053Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028054Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028056Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028057Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028061Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028062Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028139Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028144Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028147Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028248Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028253Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028256Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028468Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028470Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028473Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028474Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028523Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032590Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033534Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070670_10161228413300005331Switchgrass RhizosphereMGQVRQRNAVKPPETRDLDVKYVVRNQTDVVEHRNGVKIP
Ga0070666_1069722413300005335Switchgrass RhizosphereMGQVRQRNAVKPPETRDLDVKYVVRNQTDVVEHRNGVKIPKI*
Ga0070686_10037337013300005544Switchgrass RhizosphereMGQVRQRNGVKPPETQVLDVKYVVRNQTDIVEHRNGVKIPKI*
Ga0105249_1103512213300009553Switchgrass RhizosphereMGQVRQRNGVKPPETRVLDVKYVVRNHTDILEHQNGVQIAKM*V
Ga0105139_100311913300009995Switchgrass AssociatedMGQVRQQNGVKPPETGVLDVKYVVRNQTDVLEQQNGVQITKM*
Ga0134104_105045513300010276Switchgrass DegradingMGQVRQ*NGMKPPETRVLDVKYVVRNHTDVLEHRNGV
Ga0134125_1169195013300010371Terrestrial SoilGQVRQRNGVKPPETRVLDIKYVVRNQPDVLEHRNCVQIPKI*
Ga0134122_1299657513300010400Terrestrial SoilGQVRQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPSMSRVLQF*
Ga0134121_1121717613300010401Terrestrial SoilMVQVRQRNGVKLPETRVLYVKYVVRNQTDILEHRNGV
Ga0134121_1229069113300010401Terrestrial SoilQVRQRNGVKPPKTRNFEVNFVVRNQTDIVEHRNGVKILKI*
Ga0182105_103001413300015290Switchgrass PhyllosphereQRNGMKLPETRVLDVKYVVRNQTDVLEHRNGVKIHKM*
Ga0182104_108446513300015297Switchgrass PhyllosphereMGQVWQRNGVKPPETQVLDAKYVVQNQTDIVEHRNGVKSFK*
Ga0182104_110570113300015297Switchgrass PhyllosphereNGMKPPETRVLDVKYVVRNQTDILEHRNDVQIPKM*
Ga0182184_106497223300015301Switchgrass PhyllosphereFTMGQVQQRNGVKPPETRVLDVKYVVRNQTDILEH*
Ga0182180_107366513300015306Switchgrass PhyllosphereMGQVQQQNGVKPPETRVLDVKYVVQNQMDVLEHQNGVQIPKM*
Ga0182182_110213513300015311Switchgrass PhyllosphereMGQVRQRNGVKQPETRILDVKYVVRNQADVVEHRNG
Ga0182168_103159613300015312Switchgrass PhyllosphereMGQVGQ*NGVRPPETRVLDVKYVVRNQTDILEHRNDV
Ga0182168_108022013300015312Switchgrass PhyllosphereMGQVWQRNGVKQPETRILDVKYVVRNQTDVVEHRNGVKIPKI*VLD
Ga0182168_108579013300015312Switchgrass PhyllosphereQQNGVKPPETRVLDVKYVVRNQTDVVEHRNGVKIPKI*
Ga0182164_109901013300015313Switchgrass PhyllosphereTMGQVWQRNGVKPPETRVLDVKYVVRNQTDVLEH*
Ga0182136_103945613300015317Switchgrass PhyllosphereTIGQVRIRNAVKPQETRVLDIKYVVRYQADVLEHRNGVKIPKI*
Ga0182136_107345413300015317Switchgrass PhyllosphereNGVKPHKTRVLNVKYVVRNQTDILEHRSDVQIPKM*
Ga0182165_103809413300015320Switchgrass PhyllosphereMGQVWQRNGVKPPETRDLDVKYVVRNQTDIVEHQNGVKIPKM*
Ga0182165_104995513300015320Switchgrass PhyllosphereMGQVRQRNGVKPPETQVLDVKYVVRNQTDILEHRNDVQI
Ga0182148_113593213300015325Switchgrass PhyllosphereMGQVQQRNGVKPPKTRVLDAKYLVQNQMDVLEHQNGVQIPKM*
Ga0182166_105469313300015326Switchgrass PhyllosphereMGQVRQRNGVKPPETRVLDVKYVVRNQTDILEHQNGV
Ga0182166_107237013300015326Switchgrass PhyllosphereMSQARQRNGVKPPET*VLDVKYVVRNKTDFLEHRNGVKIPKM*VLD
Ga0182114_114990713300015327Switchgrass PhyllosphereMGQVQQRNGVKPPETRVLDAKYVVQNQMDVLEHQNGVQIPKM*
Ga0182135_113485713300015329Switchgrass PhyllosphereQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIHKM*
Ga0182152_103698123300015330Switchgrass PhyllosphereMGQVQKRNGVKPPETQVLEIKYVVRNQPDVLEHRNGVQIPKM*
Ga0182152_108944013300015330Switchgrass PhyllosphereMGQVRQRNDVKPPKTQNLDVKYVVRNQTDVVEHRNGVKMPKI*V
Ga0182152_111533823300015330Switchgrass PhyllosphereMGQVRQ*NGVKPPETQVLDVKYVVRNQMNVVEHRNGVK
Ga0182147_100830313300015333Switchgrass PhyllosphereRNGMKLPETRVLDVKYVVRNQTDVLEHRNGVKIHKM*
Ga0182132_111563823300015334Switchgrass PhyllosphereMGQVRQRNGVKPPETKILDANYVVRNQTDVLEHQNGVKIP
Ga0182116_106525113300015335Switchgrass PhyllosphereQVRQRNGVKPPETRVLDVKYVVRNQTDVVEHQNGVKIQRI*
Ga0182150_110094313300015336Switchgrass PhyllosphereMGQVRQRNGMKPPETRVLDVKYVVRNQTDILEHRNDVQIPKM*VLDLKEC
Ga0182150_114282513300015336Switchgrass PhyllosphereMGQVRQRNDVKPPKTRNLDVKYVVRNQTDIVEHRNGVKILKI*VLDLKEC
Ga0182150_116461713300015336Switchgrass PhyllosphereMGQVQQRNGVKPPET*VLDVKYVVRNQTDFLEHRNSVK
Ga0182151_101795513300015337Switchgrass PhyllosphereMGQVRQ*NDMKPPKTRILDVKYVVRNQTDVVEHRNGVKMPKI*VL
Ga0182151_109488023300015337Switchgrass PhyllosphereMGQVRQRNGVKPPETQVLEVNYVVRNQRDVVERRNGVKIPKL*VLDLKE
Ga0182149_102569513300015339Switchgrass PhyllosphereMCQVRQRNGMKPPKT*VLDVKYVVRNQKDVLEHRNGVKIPKM*V
Ga0182149_107284913300015339Switchgrass Phyllosphere*NGVKPPETRVLDVKYVV*NQTDVLEHRNGVKIPKI*VLDLK*
Ga0182149_113164013300015339Switchgrass PhyllosphereGQVQQRNGVKPPETRVLDVKYVMRIQADILEYRNDVQIPKM*
Ga0182133_103521313300015340Switchgrass PhyllosphereMGQVWQRNGMKPPETRVLDVKYVVRNQTDILEHRNGVQIPK
Ga0182133_112856113300015340Switchgrass PhyllosphereMGQVQQRNGVKQPETRILDVKYVVQNQTDVVEHRNGVKIPKM*
Ga0182115_115896023300015348Switchgrass PhyllosphereMGQVRQRNDVKPPKTRILDVKYVVRNQTDVVEHRNGVKMPKI*VLDLKEC
Ga0182115_127705513300015348Switchgrass PhyllosphereMGQVQQRKGVKSPET*VLDVKYVVRNQTDVLEHRNGVKIPKI*
Ga0182185_106087913300015349Switchgrass PhyllosphereMGQVRQ*NDMKPPKTRILDVKYVVRNQTDVVEHRNGVKMPKI*VLDLKEC
Ga0182185_114668713300015349Switchgrass PhyllosphereMGQVQQQNGVKPPETRVLEIKYVVRNQTDIVEHQNGVKLPQI*
Ga0182185_119551613300015349Switchgrass PhyllosphereMGQVRQRNAVKPPETRDLDVKYVVRNQTDVVEHRNGVKIPKI*VLDLKECI
Ga0182185_126413413300015349Switchgrass PhyllosphereRQRNGMKPPETRVLDVKYVVRNQTDVLEHRNCVKIPIM*
Ga0182163_106347213300015350Switchgrass PhyllosphereGVKPPETRVLDVKYVVRNQTDILEHQNGVKIPKI*
Ga0182163_106347223300015350Switchgrass PhyllosphereMGQGRQRNGVKPPETQVLDVKYVVRNQADVLEHRNGVKIPKI*
Ga0182163_124001813300015350Switchgrass PhyllosphereRQRNGMKPPETRVLDIKYVVRNQTDILEHRNDVQIPKM*
Ga0182163_127903713300015350Switchgrass PhyllosphereMGPVRQ*NGMKPPETRVLDIKYVVRNQTDILEHRNDVQIPKM*V
Ga0182169_125324013300015352Switchgrass PhyllosphereGRQRNGVKPPETQVLDVKYVVRNQTDVVEHRNGVKIPKI*
Ga0182179_120361213300015353Switchgrass PhyllosphereMGQVRQRNDVKPPETRVLDVKYVVRNQTDFLEHRNGVKI
Ga0182179_124029613300015353Switchgrass PhyllosphereGVKPPETRVLDVKYVVRNQTGVLEHRNGVQIAKI*
Ga0182167_115694313300015354Switchgrass PhyllosphereQRNGVKPPETRVLNVKFVVRNQTDILEHRNDVQIPKM*
Ga0182167_135206413300015354Switchgrass PhyllosphereQRNGMKPPETQVLDVKYVVRNQTDILEHRNGVKIPKM*
Ga0182199_103193613300017412Switchgrass PhyllosphereAQVRQQNGMKLPETRVLDVKYVVRNQTDVLEHRNGVKIHKM
Ga0182199_113927823300017412Switchgrass PhyllosphereMGQVQQXNGVKPPETRVLDVKYVVRNQTDVLEHRN
Ga0182195_110490813300017414Switchgrass PhyllosphereNGMKLPETRVLDVKYVVRNQTDVLEHRNGLKIHKM
Ga0182201_104579813300017422Switchgrass PhyllosphereMGQVRQXNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPKMXVLDLKECI
Ga0182194_111057713300017435Switchgrass PhyllosphereQVRQRNGVKPPETQVLDVKYVVRNQTDIVEHRNGVKIPKI
Ga0182214_110555313300017440Switchgrass PhyllosphereMAQVRQRNGMKLPETRVLDVKYVVXNQMDVLEHRNGVKIHKMXVLD
Ga0182198_110106313300017445Switchgrass PhyllosphereGHVRQRNGVKPPETRVLDIKYVVRNQPDVLEHQNCVQIPKI
Ga0182215_109197613300017447Switchgrass PhyllosphereNGVKPPETRVLDIKYVVRNQTDVVEHRSGVKLPQI
Ga0182216_110920313300017693Switchgrass PhyllosphereMHPILIFTMGKVRQRNGVKPPETRVLHIKYVERNQTDIVEHRN
Ga0182216_113499613300017693Switchgrass PhyllosphereMGQVRQXNAVKPHETRDLDVKYVVRNQTDVVEHRNGVKIPKIXVLDL
Ga0182178_100963513300020023Switchgrass PhyllosphereRQRNGMKPPKTRIFDLKYVVRNQTDIVEHRNGVKIPKM
Ga0182178_101334513300020023Switchgrass PhyllosphereMGQVRQRNGVKPPETRVLDVKYVVRNQTDVLEHQNGVQIAKMXVLDQKE
Ga0182178_101734713300020023Switchgrass PhyllosphereMGQVRQQNGVKPPETRVLDIKYVVRNQPDILEHRNCVQIPKM
Ga0207680_1095179923300025903Switchgrass RhizosphereQVQKRNGVKPPETQVLEIKYVVRNQPDVLEHRNGVQIPKM
Ga0207650_1132915813300025925Switchgrass RhizosphereMGQVRQRNAVKPPETRDLDVKYVVRNQTDVVEHRNGVKIPKIXVL
Ga0207644_1089544023300025931Switchgrass RhizosphereQRNGLKPPETQVLDVKYVVRNQTDVLEHQNGVKIPKM
Ga0207703_1062520423300026035Switchgrass RhizosphereMGQVRQRNGVKPPETQVLDVKYVVRNQMNIVEHRNGVKIP
Ga0207703_1102205313300026035Switchgrass RhizosphereRNGVRPPETRVLVVKYVVRNQTDILEHRNDVQIPKM
Ga0268328_104552213300028050PhyllosphereIFTMGQVRQRNGVKPPETRVLDIKYMVRNQTDFLEQRNGVKIPKM
Ga0268344_100152523300028051PhyllosphereMAQVRQRNGMKLPETRVLDVKYVVRNQTDILEHRNGLKIHKM
Ga0268346_103482713300028053PhyllosphereMGQVRQRNGVKPPETQVLDVKYVVRNQTDIVEHRNGVKIPKI
Ga0268306_101687513300028054PhyllosphereFTMGQVRQRNGVKPPKTLVLDIKYVVRNQTDVVELRNGVKLPQI
Ga0268330_102101013300028056PhyllosphereGQVRQRNGVKPPETRVLDIKYMVRNQTDFLEQRNGVKITKM
Ga0268330_102119513300028056PhyllosphereMGQVQQRNGVKRPKTRVLDVKYVVRNQTDILEHRNGVKIPKMXVLDL
Ga0268330_104943613300028056PhyllosphereMGQVRQRNGMKPPETRVLDIKYVVRNQPDILDHRNCVQIPKM
Ga0268330_105475313300028056PhyllosphereMGQVRQRNGVKPPETLVLDIKYVVRNQPDILEHRNGVQIPKMXALDL
Ga0268330_105731113300028056PhyllosphereMGQVRQRKGMKLPKTRVLDIKYVVRNQTDILEHRNGVKIPK
Ga0268352_102942613300028057PhyllosphereMGQVRQRNGVKPPETXVLDKKYVVRNQTDVVEHRNG
Ga0268332_103741913300028058PhyllosphereMKPPETRVLDVKYVVRNQTDVLEHRNCVKIPIMCVLDLTECIEIF
Ga0268332_107922813300028058PhyllosphereMGQVRQRNGVKPPETXVLDKKYVVRNQTDVVEHRNGVKLPQIXVL
Ga0268314_100322623300028061PhyllosphereGQVRQRSDVKPPKTQVLDVKYVVRNQTDVLEQQNGVQITKM
Ga0268342_100419113300028062PhyllosphereMGQVQQQNGVKPPKTRVLDLNFVVQNQTDVLEHRNLVK
Ga0268342_100419133300028062PhyllosphereLIFTMGQVQQQNGVKPPKTRVLDLNFVVQNQTDVLEHRNLVKIPKI
Ga0268355_100386923300028139PhyllosphereMGQVRQRNGVKPPETRVLDVKYGVRNQMDVLEHRNGVQIPKMXVLDLK
Ga0268347_100212023300028142PhyllosphereGQVRQRNGMKPPETRVLDVKYVVRNQTDVLEHXNGVQIPKMXVLDLK
Ga0268348_100317313300028143PhyllosphereMGQVRQRNGLKQPEIXILDIKYVVRNQTDVVEHRNG
Ga0268348_101609813300028143PhyllosphereMGQVRQRNGMKPPKTRIFDLKYVVRNQTDVVEHRNGVK
Ga0268348_102043613300028143PhyllosphereTMGQVRQRNGVKPPETRVLDVKYVVRNQTDILEHRNGV
Ga0268345_100310713300028144PhyllosphereMGQVRQRNAVKPPETRDLDVKYVVRNQTDVVEHRNGVKI
Ga0268345_100924013300028144PhyllosphereMGQVRQRNGVKPPKTRVLDIKYVVRNQPDILAHXNGVQIPKMXVLNLKEC
Ga0268303_10494613300028147PhyllosphereMGQVRQRNGVKPPETRVLDIKYVVRNQTNIVEHRNGVKLPQI
Ga0268308_101274113300028151PhyllosphereMGQVRQRNGLKPPETQVLGVKYVVRNQIDVLEHRNGVKIPKMXVL
Ga0268308_101745013300028151PhyllosphereGQVQQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPKM
Ga0268308_102751013300028151PhyllosphereMGQVRQRNGVKPPETRVLDVKYVVRNQTDILEHXNG
Ga0268308_103143213300028151PhyllosphereMGQVRQRNDVKPPETRVLDVKYVVRNQTDFLEHRNG
Ga0268336_103152713300028152PhyllosphereIFTMGQVRQRNGVKPPETRVLDVKYVVRNQTDILEHRNDVQIPKM
Ga0268320_100358823300028153PhyllosphereMVQVRQRNGVKPPKTRVLDVKYVVXNQTDIVDNRNGVK
Ga0268320_100629213300028153PhyllosphereMGQVQQQNGVKPPKTRVLDLNFVVQNQTDVLEHQNL
Ga0268320_102891313300028153PhyllosphereMGLVWQXNGMKPPETRVLDVKYMVRNQTDVVEHRNGVK
Ga0268312_102358213300028248PhyllosphereQRNGVKPPETQILDVKYVVRNQTDVVEHRNCVKIPKI
Ga0268316_100208713300028253PhyllosphereMGQVRQXNGVKPPETRVLEVKYVVQNQRDVVEHRN
Ga0268304_100694113300028256PhyllosphereNGVKPTKTRVLDVKYMVRNQTDVLEHRNGVQIPKM
Ga0268310_100104013300028262PhyllosphereMGQVQQRKGVKSPETXVLDVKYVVRNQTDVLEHRNGVKIPKIXVLDLK
Ga0268310_101110013300028262PhyllosphereMGQVRQXNGMKPHKTRILDVKYVVRNQTNVVEHRNGVK
Ga0268317_100692313300028468PhyllosphereNGVKPPKTRTLDVKYVVRNQTDIVKHRNGVKILKI
Ga0268307_100064323300028470PhyllosphereMGQVWQRNGVKPPETRVLDVKYVVRNQTDVLEHRNGVQIPKMXVLD
Ga0268315_100696413300028472PhyllosphereMGQVWQRNGVKQPETRILDVKYVVRNQTDVVEHRNGVKIPKIXV
Ga0268319_101726113300028473PhyllosphereQRNGVKPPETQVLDVKYVVRNQMDVVEHRNGVKIPKI
Ga0268331_101154913300028474PhyllosphereMGQVRQXNGVKPPETXVLEVKYVVRNQTDILEHRNDVQI
Ga0268329_101529713300028476PhyllosphereMGQVRQRNGVKPPETRVLDIKYVVRNQPDVLEHRNCVQIPKI
Ga0268329_102127713300028476PhyllosphereMCQVRQRNGMKPPKTXVLDIKYVVRNQKDVLEHRNGVK
Ga0268309_100522213300028477PhyllosphereMVQVWQQNGVKPPETRVLDVKYVVRNQTDVVEHRNGVKIPKI
Ga0268313_100051833300028523PhyllosphereQVRQRNGVKPPKTRVLDIKYVVRNQPDVLEHRNGVQIPKM
Ga0268311_100744513300028529PhyllosphereMGQVRQXNGVKQPETRILDVKYVVRNQTDVVEHRN
Ga0214489_106582313300032590Switchgrass PhyllosphereMGQVRQRIGVKPPKTRVLDVKYVVRNQMDVVEHQNGVKFPKIXV
Ga0314757_112869913300033534Switchgrass PhyllosphereMGQVQQRNGVKPPEIRVLDVKYVVXNQTDILEHRNGVQI


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