NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F066910

Metagenome / Metatranscriptome Family F066910

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F066910
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 64 residues
Representative Sequence MDDDRAREIATAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLPHPGDAKR
Number of Associated Samples 103
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 73.39 %
% of genes near scaffold ends (potentially truncated) 25.40 %
% of genes from short scaffolds (< 2000 bps) 87.30 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.825 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(22.222 % of family members)
Environment Ontology (ENVO) Unclassified
(31.746 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.937 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.39%    β-sheet: 0.00%    Coil/Unstructured: 57.61%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF01425Amidase 42.86
PF07683CobW_C 21.43
PF08241Methyltransf_11 16.67
PF03417AAT 1.59
PF132392TM 0.79
PF05988DUF899 0.79
PF10431ClpB_D2-small 0.79
PF00296Bac_luciferase 0.79
PF04468PSP1 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 42.86
COG0523Zinc metallochaperone YeiR/ZagA and related GTPases, G3E familyGeneral function prediction only [R] 21.43
COG4927Predicted choloylglycine hydrolaseGeneral function prediction only [R] 1.59
COG1774Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development)Signal transduction mechanisms [T] 0.79
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.79
COG4312Predicted dithiol-disulfide oxidoreductase, DUF899 familyGeneral function prediction only [R] 0.79

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.83 %
UnclassifiedrootN/A3.17 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c2060510All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria789Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105348678All Organisms → cellular organisms → Bacteria → Proteobacteria785Open in IMG/M
3300000956|JGI10216J12902_115483522All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300004114|Ga0062593_100340137All Organisms → cellular organisms → Bacteria1305Open in IMG/M
3300004156|Ga0062589_102730601All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria514Open in IMG/M
3300004480|Ga0062592_100373869All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1120Open in IMG/M
3300004643|Ga0062591_102447528All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria548Open in IMG/M
3300004643|Ga0062591_102461238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria546Open in IMG/M
3300005093|Ga0062594_101195172All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300005093|Ga0062594_101512178All Organisms → cellular organisms → Bacteria → Proteobacteria689Open in IMG/M
3300005175|Ga0066673_10794882All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium541Open in IMG/M
3300005184|Ga0066671_10128582All Organisms → cellular organisms → Bacteria1448Open in IMG/M
3300005333|Ga0070677_10648995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium589Open in IMG/M
3300005336|Ga0070680_101446297All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria595Open in IMG/M
3300005347|Ga0070668_101453345All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium626Open in IMG/M
3300005353|Ga0070669_100635322All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300005364|Ga0070673_102151681All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales530Open in IMG/M
3300005366|Ga0070659_101884110Not Available536Open in IMG/M
3300005406|Ga0070703_10587837All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria512Open in IMG/M
3300005440|Ga0070705_100668582All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria812Open in IMG/M
3300005440|Ga0070705_101223530All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300005441|Ga0070700_101604978All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium556Open in IMG/M
3300005451|Ga0066681_10421901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium819Open in IMG/M
3300005454|Ga0066687_10098126All Organisms → cellular organisms → Bacteria1473Open in IMG/M
3300005457|Ga0070662_101787390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales531Open in IMG/M
3300005467|Ga0070706_100974950All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300005529|Ga0070741_10000219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales217645Open in IMG/M
3300005529|Ga0070741_10245566All Organisms → cellular organisms → Bacteria1708Open in IMG/M
3300005545|Ga0070695_101280145All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium605Open in IMG/M
3300005549|Ga0070704_100220825All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1541Open in IMG/M
3300005617|Ga0068859_100567484All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1229Open in IMG/M
3300005841|Ga0068863_101153674All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300005842|Ga0068858_100434260All Organisms → cellular organisms → Bacteria1264Open in IMG/M
3300005844|Ga0068862_101608276All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300005985|Ga0081539_10059499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2103Open in IMG/M
3300005985|Ga0081539_10159050All Organisms → cellular organisms → Bacteria1079Open in IMG/M
3300006046|Ga0066652_100350018All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300006046|Ga0066652_102014285All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium514Open in IMG/M
3300006049|Ga0075417_10201251All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria943Open in IMG/M
3300006196|Ga0075422_10084310All Organisms → cellular organisms → Bacteria1199Open in IMG/M
3300006603|Ga0074064_11678726All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300006791|Ga0066653_10236249All Organisms → cellular organisms → Bacteria931Open in IMG/M
3300006844|Ga0075428_100293490All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1749Open in IMG/M
3300006844|Ga0075428_100322235All Organisms → cellular organisms → Bacteria → Proteobacteria1661Open in IMG/M
3300006844|Ga0075428_100510082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1286Open in IMG/M
3300006844|Ga0075428_102308857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales554Open in IMG/M
3300006845|Ga0075421_100303283All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1941Open in IMG/M
3300006845|Ga0075421_100364977All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1742Open in IMG/M
3300006847|Ga0075431_101594757All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria610Open in IMG/M
3300006854|Ga0075425_101862351All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium674Open in IMG/M
3300006871|Ga0075434_102242929All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300006880|Ga0075429_100063559All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales3215Open in IMG/M
3300006953|Ga0074063_13792681All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae618Open in IMG/M
3300006954|Ga0079219_11696771All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales585Open in IMG/M
3300006969|Ga0075419_10654543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria742Open in IMG/M
3300009094|Ga0111539_10017453All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans8886Open in IMG/M
3300009094|Ga0111539_12751486All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae570Open in IMG/M
3300009100|Ga0075418_10240676All Organisms → cellular organisms → Bacteria → Proteobacteria1927Open in IMG/M
3300009100|Ga0075418_10251078All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1884Open in IMG/M
3300009100|Ga0075418_10418809All Organisms → cellular organisms → Bacteria1433Open in IMG/M
3300009137|Ga0066709_100687046All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1470Open in IMG/M
3300009143|Ga0099792_11097741All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae536Open in IMG/M
3300009147|Ga0114129_13342703All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria517Open in IMG/M
3300009156|Ga0111538_11103755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia1003Open in IMG/M
3300009162|Ga0075423_10204727All Organisms → cellular organisms → Bacteria2070Open in IMG/M
3300009162|Ga0075423_12286016All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300009162|Ga0075423_12287115All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300009545|Ga0105237_12733258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium505Open in IMG/M
3300009609|Ga0105347_1304784All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli669Open in IMG/M
3300009819|Ga0105087_1070307All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae607Open in IMG/M
3300010371|Ga0134125_11374245All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli770Open in IMG/M
3300010373|Ga0134128_11658971All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium703Open in IMG/M
3300010375|Ga0105239_10890365All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1021Open in IMG/M
3300010399|Ga0134127_13247333All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae531Open in IMG/M
3300011415|Ga0137325_1093915All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria676Open in IMG/M
3300011440|Ga0137433_1043501All Organisms → cellular organisms → Bacteria1327Open in IMG/M
3300011440|Ga0137433_1304875All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae517Open in IMG/M
3300012930|Ga0137407_12150336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria533Open in IMG/M
3300012955|Ga0164298_11088810All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium597Open in IMG/M
3300012986|Ga0164304_10266371All Organisms → cellular organisms → Bacteria → Proteobacteria1157Open in IMG/M
3300012986|Ga0164304_10836675All Organisms → cellular organisms → Bacteria714Open in IMG/M
3300012989|Ga0164305_10681766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium837Open in IMG/M
3300013306|Ga0163162_12267243All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300013308|Ga0157375_12336111All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300014326|Ga0157380_10670148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1038Open in IMG/M
3300014969|Ga0157376_11906446All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300015195|Ga0167658_1005214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales4481Open in IMG/M
3300015245|Ga0137409_10866019All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300015371|Ga0132258_10544127All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2909Open in IMG/M
3300015373|Ga0132257_101771848All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300015374|Ga0132255_101283586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1104Open in IMG/M
3300017659|Ga0134083_10563276All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300017792|Ga0163161_10901481All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium749Open in IMG/M
3300017792|Ga0163161_11880169All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300017936|Ga0187821_10178912All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300018060|Ga0187765_10977133All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300018083|Ga0184628_10259963All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli912Open in IMG/M
3300018422|Ga0190265_10236181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1866Open in IMG/M
3300018468|Ga0066662_11143793All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria782Open in IMG/M
3300018469|Ga0190270_10101783All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2204Open in IMG/M
3300018482|Ga0066669_11475918All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae617Open in IMG/M
3300021082|Ga0210380_10128514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1130Open in IMG/M
3300024347|Ga0179591_1095475All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2902Open in IMG/M
3300025923|Ga0207681_10653600All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300025936|Ga0207670_10428854All Organisms → cellular organisms → Bacteria1062Open in IMG/M
3300025941|Ga0207711_10184045All Organisms → cellular organisms → Bacteria1901Open in IMG/M
3300026498|Ga0257156_1102371All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales596Open in IMG/M
3300027324|Ga0209845_1038067Not Available767Open in IMG/M
3300027815|Ga0209726_10024239All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4991Open in IMG/M
3300027880|Ga0209481_10138107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1198Open in IMG/M
3300027907|Ga0207428_10008427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium9308Open in IMG/M
3300027907|Ga0207428_10480126All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300027909|Ga0209382_10040717All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales5564Open in IMG/M
3300027909|Ga0209382_10660312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae1130Open in IMG/M
3300028380|Ga0268265_11750709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300028381|Ga0268264_10848740All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300028381|Ga0268264_12352638All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae539Open in IMG/M
3300028792|Ga0307504_10395334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium543Open in IMG/M
3300028889|Ga0247827_11088535All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300031965|Ga0326597_10866795All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300033550|Ga0247829_10111352All Organisms → cellular organisms → Bacteria2078Open in IMG/M
3300033551|Ga0247830_11550693All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae530Open in IMG/M
3300034155|Ga0370498_000235All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria21034Open in IMG/M
3300034155|Ga0370498_090938All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae704Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere22.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.56%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.56%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil3.17%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.17%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.38%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.38%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.59%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.59%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.59%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.59%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.59%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.59%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.59%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.79%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.79%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.79%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.79%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.79%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.79%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.79%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006603Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009819Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011415Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2EnvironmentalOpen in IMG/M
3300011440Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015195Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redoEnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300027324Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034155Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_206051033300000033SoilMTNDEQHARQIATAEGLTKLDEKQLAQLAQSVASARELAGKLPKDLHWSEEIALVFRLPTPEDNGR*
INPhiseqgaiiFebDRAFT_10534867823300000364SoilMENDRARQIALAAGLTALDEKHLTQLAXSXASXRELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
JGI10216J12902_11548352223300000956SoilVKVMKDERARELAAAAGLTKLDEKHLAQLAQGIASARDLAAKLPKDLHWGEEIALAFRLAPPAEGGKR*
Ga0062593_10034013723300004114SoilMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0062589_10273060113300004156SoilMDEERVREIAAAAGLDKLTDKQLTEFAAAIASGRALAEMLPKDLHWSEESALVFRLPMPARSAR*
Ga0062592_10037386923300004480SoilLDGVTIMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0062591_10244752823300004643SoilMMDDDRAREIATATGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0062591_10246123823300004643SoilMENDRAREIAIAAGLTKLDDKHMAQLANSVASAREVGGKLPKDLHWSEEIALVFRLPDTKDAPP*
Ga0062594_10119517223300005093SoilMDDDRAREIATAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0062594_10151217823300005093SoilMTTDKDRALEIASAAGLTVLDEKHRAQLASSVASARELAGKLPKDLHWSEEIALIFSLPDRGSAKP*
Ga0066673_1079488223300005175SoilMENDRARQIALAAGLTALDEKHLAQLASSVASGHELSAKLPKDLHWSEEIALTFRLPGSGSAKR*
Ga0066671_1012858233300005184SoilMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0070677_1064899523300005333Miscanthus RhizosphereMAIGDDERAQQVAALTGLTKLEAKHLAQLANSVASAREAGAKLPKDLHWSEEIALIFRLPVPGSGKP*
Ga0070680_10144629713300005336Corn RhizosphereMTIDEKHARLVATAAGLTKLDEKHLAQLALSIASARELAGKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0070668_10145334523300005347Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIALTFRLPGSGSAKR*
Ga0070669_10063532223300005353Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIALTFRLPGSGNAKR*
Ga0070674_10175517523300005356Miscanthus RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEI
Ga0070673_10215168123300005364Switchgrass RhizosphereIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0070659_10188411023300005366Corn RhizosphereMDEERVREIAAAAGLDKLTDKQLTEFAAAIASGRALAEMLPKDLHWSEESALVFRLPMPARSAR
Ga0070703_1058783723300005406Corn, Switchgrass And Miscanthus RhizosphereMTNDETHARQIATAAGLTRLDERQLAQLALSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0070705_10066858223300005440Corn, Switchgrass And Miscanthus RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTLRLPSSGSAKR*
Ga0070705_10122353023300005440Corn, Switchgrass And Miscanthus RhizosphereRQDLDGVTIMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0070700_10160497813300005441Corn, Switchgrass And Miscanthus RhizosphereLDGVTIMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVF
Ga0066681_1042190113300005451SoilMTNDETRARLVATGAGLTKLDEKHLAQLAQSVASARELAGKLPQDLHWSEEIALVFRLPRPGD
Ga0066687_1009812623300005454SoilMENDRARQIALAAGLTALDEKHLTQLASSLASGRELSAKLPKDLHWSEEIALTFRLPGSGSAKR*
Ga0070662_10178739023300005457Corn RhizosphereLAAGLTALDEKHLTQLTSSVASGRELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0070706_10097495013300005467Corn, Switchgrass And Miscanthus RhizosphereVMKDERARELAAVVGLTKLDEKHLAQLAQGIASARELAAKLPKDLHWGEEIALTFRLAPPAGGKR*
Ga0070741_10000219833300005529Surface SoilMANDEERARDIAAAAGLSRLTDEHLAQLAKGVASIRELAAKLPKDLHWSEETAQVFRLPRPRK*
Ga0070741_1024556623300005529Surface SoilMDKDRTQKVAADAGLGRLDDRHLTQLANGIASARELAGQLPKDLHWSEEIALTFRLPAPGRSKP*
Ga0070695_10128014513300005545Corn, Switchgrass And Miscanthus RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALVF
Ga0070704_10022082533300005549Corn, Switchgrass And Miscanthus RhizosphereMDDDRAREIATAAGLTKLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGEAKR*
Ga0068859_10056748423300005617Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALVFRLPAPGSAKP*
Ga0068863_10115367423300005841Switchgrass RhizosphereMENDRARRIALAAGLTALDEKHLTQLANSLASGRELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0068858_10043426023300005842Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0068862_10160827623300005844Switchgrass RhizosphereIDGVTTMDDDRAREIATAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLAAPGDAKR*
Ga0081539_1005949933300005985Tabebuia Heterophylla RhizosphereMDERTREAAAAAGLDKLDEKQLDQLATGIASTHELAGKLPKDLHWSEEPAHVFRLPVSASRKP*
Ga0081539_1015905023300005985Tabebuia Heterophylla RhizosphereMDKDHAREIAEADGLTRLSDKHLDQLAQAVASARELAGRLPKDLHWSEEIALALRLPTPKETKR*
Ga0066652_10035001823300006046SoilMENDRARQIALAAGLTALDEKHLTQLASSLASGRELSAKLPKDLHWSEEIALTLRLPSSGSAKR*
Ga0066652_10201428523300006046SoilMTNDETRARLVATGAGLTKLDEKHLAQLAQSVASARELAGKLPQDLHWSEEIAL
Ga0075417_1020125123300006049Populus RhizosphereMDKDLAKEIAAAEGLPKLDEKQLTQLAQGVASARELAQKLPKDLHWSEEIALIFRLPPSGEPKR*
Ga0075422_1008431023300006196Populus RhizosphereSRVCGGERRTGTMDKDRAEEIATAEGLTKLDEKQLAQLTQSVASARELAGKLPKDLHWSEEIAVVFRLPTPEDTGR*
Ga0074064_1167872623300006603SoilLAAGLTALDEKHLTQLANSLASGRELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0066653_1023624923300006791SoilMENDRARQIALAAGLTALDEKHLTQLANSLASGRELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0075428_10029349013300006844Populus RhizosphereMDKDRAEEIATAEGLTKLDEKQLAQLTQSVASARELAGKLPKDLHWSEEIAL
Ga0075428_10032223523300006844Populus RhizosphereMTDDETHARQIATAAGLTRLDERQLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGDAKR*
Ga0075428_10051008223300006844Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQLAQSVASGRELATMLPKDLHWSEEIALIFRLPPSGESKR*
Ga0075428_10230885723300006844Populus RhizosphereMMDDNRTREIAMAAGLTNLDERHLAQLALSVASARELAAKLPKDLHWSEEIALVFHLPRPGDAKR*
Ga0075421_10030328343300006845Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALIFRL
Ga0075421_10036497743300006845Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQLAQSVASGRELATMLPKDLHWSEEIALIFRLPPSG
Ga0075431_10159475723300006847Populus RhizosphereMDKDLAKEIAAAEGLPKLDEKQLTQLAQGVASARELAQKLPKDLHWSEEIALIFRLPPSGESKR*
Ga0075425_10186235123300006854Populus RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASGRELSAKLPKDLHWSEEIALT
Ga0075434_10224292923300006871Populus RhizosphereMDQISAKQIAAAAGLTKLDEKHLGQLALSIASARELAAKLPKDLHWSKEIALTFRLPRPGDAKP*
Ga0075429_10006355923300006880Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALIFRLPTPKDTGR*
Ga0074063_1379268123300006953SoilMENDRARQIALAAGLTALDEKHLTQLASSLASGRELSAKLPKDLHWSEEIALTLRLPGSGSAKR*
Ga0079219_1169677123300006954Agricultural SoilSSASSKGASAWTMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0075419_1065454323300006969Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALICRLPPSGESKR*
Ga0111539_1001745373300009094Populus RhizosphereMDKDRAEEIATAEGLTKLDEKQLAQLTQSVASARELAGKLPKDLHWSEEIAVVFRLPTPEDTGR*
Ga0111539_1275148623300009094Populus RhizosphereMDEDRAHEIATAAGLTKLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGEAKR*
Ga0075418_1024067633300009100Populus RhizosphereMTNDETHARQIATAAGLTRLDERQLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGDAKR*
Ga0075418_1025107823300009100Populus RhizosphereMDKDRAEEIATAEGLTKLDEKQLAQLTQSVASARELAGKLPKDLHWSEEIALVFRLPTPEDTGR*
Ga0075418_1041880913300009100Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALIFRLPPSGESKR*
Ga0066709_10068704623300009137Grasslands SoilMTNDETRARLVATGAGLTKLDEKHLAQLAQSVASARELAGKLPQDLHWSEEIALVFRLPRPGDTKR*
Ga0099792_1109774113300009143Vadose Zone SoilMTTDNDRAREIAAAAGLTKLGEKHLAQLAASVASGRELAGKLPKDLHWSEEIALTFRLPGPGNAKR*
Ga0114129_1334270323300009147Populus RhizosphereMSSEDSQARLIATAAGLAKLDGKHLAQFAQSVASSRELAAKLPKDLHWSEEIALTFRLPVPPGGAKP*
Ga0111538_1110375523300009156Populus RhizosphereMDKDLAKEIAAAEGLPKLDEKQLTQLARGVASARELAQKLPKDLHWSEEIALIFRLPPSGESKR*
Ga0075423_1020472723300009162Populus RhizosphereMENDRARQIALAAGLTALDAKHLTQLANSLASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0075423_1228601623300009162Populus RhizosphereDEHRAREIAAAAGLTKLDERHLAQLAQSVASARELAGKLPQDLHWSEEIALVFRLPRPGDTQR*
Ga0075423_1228711523300009162Populus RhizosphereMTIDENHARLIATAAGLTSLDEKHLAQLAQSVASARELAGKLPKDLHWSEEVALVFRLPIPGDAKR*
Ga0105237_1273325813300009545Corn RhizosphereMHRAMTTDKDRALEIASAAGLTVLDEKHRAQLASSVASARELAGKLPKDLHWSEEIALI
Ga0105347_130478423300009609SoilMTNDETHARQIATAAELTRLDEKQLAQLALSVASARELAGKLPKDLHWSEEIALVFRLPHPGDAKR*
Ga0105087_107030723300009819Groundwater SandMLLSFWESEGKVVMSTMDNDRAREIAAAERLTSLSERQLAQLVQGIASARELAEKLPKELHWSEEIALVFRLPQPGSVER*
Ga0134125_1137424513300010371Terrestrial SoilMTIDENNARVVATAAGLAKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLPAPGEAKR*
Ga0134128_1165897123300010373Terrestrial SoilMAIGDDERAQQVAALTGLTNLEAKHLAQLANSVASAREAGAKLPKDLHWSEEIALIFRLPVPGSGKP*
Ga0105239_1089036523300010375Corn RhizosphereMAIGDDERAQQVAALTGLTKLEAKHLAQLANSVASAREAGAKLPKDPHWSEEIALIFRLPVPGSGKP*
Ga0134127_1324733323300010399Terrestrial SoilDDRAREIARAAGLSNLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLPAPGEAKR*
Ga0137325_109391523300011415SoilMKDERARELAAAAGLTKLDEKHLAQLAQGIASARELAAKLPKDLHWGEEIALAFRLAPPEGGKR*
Ga0137433_104350113300011440SoilTAAGLTKLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPHPGVANR*
Ga0137433_130487513300011440SoilMTNDKDHARQIATAAGLTKLDEKHLAQLALSVASARELAGKLPKDLHWSEEMALVFRLPSPGDAKR*
Ga0137407_1215033623300012930Vadose Zone SoilMTIEDDRAREIAGAADLTALDGKHLAQLANAVASGRELSAKLPKDLHWSEEIALVFRLPDPAREKP*
Ga0164298_1108881023300012955SoilMAIEDDERARQIAALTGLTKLEAKHLAQLANSVASARDASAKLPKDLHWSEEIALVFRLPAPGSAKP*
Ga0164304_1026637123300012986SoilSAMTNDETRARLVATGAGLTKLDEKHLAQLAQSVASARELAGKLPQDLHWSEEIALVFRLPRPGDTQR*
Ga0164304_1083667523300012986SoilMEDDRARQIALAAGLTALDAKHLTQLASSVASERELSAKLPKDLHWSEEIALTLRLPGSGSAKR*
Ga0164305_1068176623300012989SoilMAIEDDERARQIAALTGLAKLQAKHLAQLANSVASARDASAKLPKDLHWSEEIALVFRLPAPGSAKP*
Ga0163162_1226724333300013306Switchgrass RhizosphereMAMEDDRTRQVALAAGLAVLDEKHLAQLVNSVASGRELAGKLPRDLHWSEEIALIFRLPVPGSGKP*
Ga0157375_1233611123300013308Miscanthus RhizosphereMHRAMTTDKDRALEIASAAGLTVLDEKHRAQLASSVASARELAGKLPKDLHWSEEIALIFSLPDRGSAKP*
Ga0157380_1067014823300014326Switchgrass RhizosphereMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGDAKR*
Ga0157376_1190644613300014969Miscanthus RhizosphereMEKDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR*
Ga0167658_100521443300015195Glacier Forefield SoilMSEDNAKSLAAALGLAKLDAGQLAQLAKSIESGREAAAKLPKDLHWSEESALVFRLPMPADNTP*
Ga0137409_1086601923300015245Vadose Zone SoilRAREIAAAAGLTKLDDKHLAQLAAGIASGRELAGKLPKDLHWSEEIALTFRLPGPGSAKR
Ga0132258_1054412733300015371Arabidopsis RhizosphereMSMDKDKDEARRVATAAGLTKLTDRHLTELARGVASGRELSSKLPKDLHWSEEIALVFRLPQPREASR*
Ga0132257_10177184823300015373Arabidopsis RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALTFRLPGSGSAKR*
Ga0132255_10128358623300015374Arabidopsis RhizosphereMAIGDDERAQQVAALPGLTKLEAKHLAQLANSVASAREAGAKLPKDLHWSEEIALIFRLPVPGSGKP*
Ga0134083_1056327623300017659Grasslands SoilADLTALDGKHLAQLANAVASGRELSARLPKDLHWSEEIALIFRLPDPAREKP
Ga0163161_1090148133300017792Switchgrass RhizosphereMENDRAREIAIAAGLTKLDDKHMAQLANSVASAREVGGKLPKDLHWSEEIALVFRLPDTKDAQP
Ga0163161_1091424823300017792Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIA
Ga0163161_1188016913300017792Switchgrass RhizosphereDERAQQVAALTGLTKLEAKHLAQLANSVASAREAGAKLPKDLHWSEEIALIFRLPVPGSGKP
Ga0187821_1017891223300017936Freshwater SedimentMSTDESDARRVAIAAGLPKLDGKHLPQLAQAMASTRELGAKLPKDLHWSEEMALTFRLAPRGEAKP
Ga0187765_1097713323300018060Tropical PeatlandVPAIAIGDDERAQQVAALTGLTKLEAKHLAQLANSVASAREAGAKLPKDLHWSEEIALIFRLPVPGSGKP
Ga0184628_1025996323300018083Groundwater SedimentMDDDRAREIATAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLPHPGDAKR
Ga0190265_1023618123300018422SoilMDMERAREIAAAAGLTKLDEKHVGQLALGMTSTRELAGKLPKDLHWSEEIALTFRLPGPGSAKR
Ga0066662_1114379323300018468Grasslands SoilVATGAGLTKLDEKHLAQLAQSVASARELAGKLPQDLHWSEEIALVFRLPRPGDTKR
Ga0190270_1010178323300018469SoilMKDERARELAAAAGLTKLDEKHLAQLAQGIASARELAAKLPKDLHWGEEIALAFRLAPPEGGKR
Ga0066669_1147591823300018482Grasslands SoilMENDRARQIALAAGLTALDEKHLTQLASSLASGRELSAKLPKDLHWSEEIALTLRLPSSGSAKR
Ga0210380_1012851423300021082Groundwater SedimentMIMDENRAREIAAAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLPHPGDAKR
Ga0179591_109547533300024347Vadose Zone SoilMSAEDDRAREIAGAADLTALDGKHLAQLANAVASGRELSAKLPKDLHWSEEIALVFRLPDPAREKP
Ga0207681_1065360023300025923Switchgrass RhizosphereMDDDRAREIATAAGLTNLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALTFRLPSSGSAKR
Ga0207670_1042885423300025936Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIALTFRLPSSGSAKR
Ga0207711_1018404523300025941Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLANSVASERELSAKLPKDLHWSEEIALIFRLPVPGSGKP
Ga0257156_110237123300026498SoilMEIDRARQIALAAGLTALDEKHLTQLADSVASGRELADKLPKDLHWSEEIALTFRLPGCGSAKR
Ga0209845_103806723300027324Groundwater SandEGKVIMSTMDNDRAREIAAAERLTSLSERQLAQLVQGIASARELAEKLPKDLHWSEEIALVFRLPQPGSVER
Ga0209726_1002423953300027815GroundwaterMTRDEDQARLIATAAGLTRLNEKHLAQLAQSVASTRELAAKLPKDLHWSEEIALTFRLPMPGDAKP
Ga0209481_1013810723300027880Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALIFRLPPS
Ga0207428_1000842723300027907Populus RhizosphereMDKDRAEEIATAEGLTKLDEKQLAQLTQSVASARELAGKLPKDLHWSEEIALVFRLPTPEDTGR
Ga0207428_1048012613300027907Populus RhizosphereMTNDETHARQIATAAGLTRLDERQLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGDAKR
Ga0209382_1004071723300027909Populus RhizosphereMDKDRAREIAAAEGLTKLDEKQLAQSVASGRELAEKLPKDLHWSEEIALIFRLPTPKDTG
Ga0209382_1066031223300027909Populus RhizosphereMDKDLAKEIAAAEGLPKLDEKQLTQLAQGVASARELAQKLPKDLHWSEEIALIFRLPPSGEPKR
Ga0268265_1175070923300028380Switchgrass RhizosphereMDDDRAREIATAAGLTKLDEKHLAQLAQSVASARELAAKLPKDLHWSEEIALVFRLAAPGDAKR
Ga0268264_1084874023300028381Switchgrass RhizosphereMENDRARQIALAAGLTALDEKHLTQLASSVASERELSAKLPKDLHWSEEIALTFRLPIPGDAKS
Ga0268264_1235263813300028381Switchgrass RhizosphereMTTDKDRALEIASAAGLTVLDEKHRAQLASSVASARELAGKLPKDLHWSEEIALIFRLPVPGSGKP
Ga0307504_1039533423300028792SoilMENDRARQIALAAGLTALDEKHLTQLASSVASGRELAGKLPKDLHWSEEIALIFRLPS
Ga0247827_1108853523300028889SoilDVRVGITGAVGTMKDERARELAAAAGLTKLDEKHLAQLAQGIASARELAAKLPKDLHWGEEIALAFRLAPPEGGKR
Ga0326597_1086679523300031965SoilMDNDRTREIALAAGLTALDDKHLAQLAKSIASGREAAGKLPQDLHWSEEIALVFRLPAPESAKP
Ga0247829_1011135223300033550SoilMDKDLAKEIAAAEGLAKLDEKQLTQLAQGIASARELAQKLPKDLHWSEEIALIFRLPPSGESKR
Ga0247830_1155069323300033551SoilMDGVTIMDDDRAREIATAAGLTKLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPAPGEAKR
Ga0370498_000235_15966_161783300034155Untreated Peat SoilMDEVMIMDENRARQIATAAGLAKPDEKHLAQLALSVASARELAAKLPKDLHWSEEIALVFRLPHPGDAKR
Ga0370498_090938_360_5723300034155Untreated Peat SoilMDEVMIMDENRARQIATAAGLTKLDEKHLAQLALSVASARELAAKLPKDLHWSEEIALIFRLPRPRVAKR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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