Metagenome Family F066930

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F066930
Family Type	Metagenome
Number of Sequences	126
Average Sequence Length	94 residues
Representative Sequence	ATMTTTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS
Number of Associated Samples	97
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.60 %
% of genes near scaffold ends (potentially truncated)	74.60 %
% of genes from short scaffolds (< 2000 bps)	88.10 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (54.762 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (27.778 % of family members)
Environment Ontology (ENVO)	Unclassified (36.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.81% β-sheet: 5.08% Coil/Unstructured: 66.10%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF12838	Fer4_7	5.56
PF13763	DUF4167	2.38
PF00037	Fer4	1.59
PF01568	Molydop_binding	1.59
PF02515	CoA_transf_3	1.59
PF03401	TctC	0.79
PF00072	Response_reg	0.79
PF02627	CMD	0.79
PF04392	ABC_sub_bind	0.79
PF11752	DUF3309	0.79
PF07369	DUF1488	0.79
PF02545	Maf	0.79
PF09084	NMT1	0.79
PF04226	Transgly_assoc	0.79
PF11737	DUF3300	0.79
PF02586	SRAP	0.79
PF04349	MdoG	0.79
PF13581	HATPase_c_2	0.79
PF00563	EAL	0.79
PF13361	UvrD_C	0.79
PF07702	UTRA	0.79
PF13683	rve_3	0.79
PF00999	Na_H_Exchanger	0.79
PF02518	HATPase_c	0.79
PF01548	DEDD_Tnp_IS110	0.79
PF13505	OMP_b-brl	0.79
PF12697	Abhydrolase_6	0.79
PF13924	Lipocalin_5	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	1.59
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.79
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.79
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.79
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.79
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.79
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.79
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.79
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.79
COG3131	Periplasmic glucan biosynthesis protein OpgG	Cell wall/membrane/envelope biogenesis [M]	0.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.79
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.79
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.79
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.79
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.79
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.79
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.00 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.24 %
Unclassified	root	N/A	45.24 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.98 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.38 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.59 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.38 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.59 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium	2.38 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium insigne	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.79 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium insigne	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
Novosphingobium sp. PP1Y	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	0.79 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_141019_length_1343_cov_10.679821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0575143	Not Available	640	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10985773	Not Available	640	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100330784	Not Available	829	Open in IMG/M
3300000787\|JGI11643J11755_11642870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300000787\|JGI11643J11755_11748660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1152	Open in IMG/M
3300000956\|JGI10216J12902_110679412	All Organisms → cellular organisms → Bacteria → Proteobacteria	1749	Open in IMG/M
3300004114\|Ga0062593_103297929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	518	Open in IMG/M
3300004463\|Ga0063356_103281712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300004479\|Ga0062595_102407989	Not Available	522	Open in IMG/M
3300004480\|Ga0062592_102126912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300005093\|Ga0062594_102037252	Not Available	615	Open in IMG/M
3300005331\|Ga0070670_100619975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	969	Open in IMG/M
3300005337\|Ga0070682_101620853	Not Available	560	Open in IMG/M
3300005347\|Ga0070668_101543834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	607	Open in IMG/M
3300005354\|Ga0070675_101380596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	650	Open in IMG/M
3300005366\|Ga0070659_100430552	Not Available	1117	Open in IMG/M
3300005435\|Ga0070714_101521716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	654	Open in IMG/M
3300005457\|Ga0070662_100713126	Not Available	849	Open in IMG/M
3300005457\|Ga0070662_101661545	Not Available	551	Open in IMG/M
3300005466\|Ga0070685_11428238	Not Available	532	Open in IMG/M
3300005564\|Ga0070664_102320054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	509	Open in IMG/M
3300005617\|Ga0068859_102499545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300005618\|Ga0068864_100880018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300005841\|Ga0068863_101566986	Not Available	668	Open in IMG/M
3300005842\|Ga0068858_100654587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300005843\|Ga0068860_102623123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300006178\|Ga0075367_10004156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7019	Open in IMG/M
3300006178\|Ga0075367_10209239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1219	Open in IMG/M
3300006844\|Ga0075428_100128631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2755	Open in IMG/M
3300006844\|Ga0075428_100190509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2218	Open in IMG/M
3300006844\|Ga0075428_100226743	Not Available	2017	Open in IMG/M
3300006844\|Ga0075428_101242524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	784	Open in IMG/M
3300006845\|Ga0075421_100068651	All Organisms → cellular organisms → Bacteria	4477	Open in IMG/M
3300006845\|Ga0075421_100529567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1395	Open in IMG/M
3300006845\|Ga0075421_100555343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300006847\|Ga0075431_100166940	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300006847\|Ga0075431_100281905	Not Available	1682	Open in IMG/M
3300006853\|Ga0075420_100424187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300006853\|Ga0075420_101485606	Not Available	581	Open in IMG/M
3300006853\|Ga0075420_101730102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300006854\|Ga0075425_100167387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2523	Open in IMG/M
3300006871\|Ga0075434_100691632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1037	Open in IMG/M
3300006880\|Ga0075429_100606954	Not Available	959	Open in IMG/M
3300006880\|Ga0075429_101689152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	550	Open in IMG/M
3300006894\|Ga0079215_10915581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	631	Open in IMG/M
3300006904\|Ga0075424_100128842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2675	Open in IMG/M
3300006904\|Ga0075424_100604713	All Organisms → cellular organisms → Bacteria → Proteobacteria	1171	Open in IMG/M
3300006914\|Ga0075436_100357991	Not Available	1052	Open in IMG/M
3300006954\|Ga0079219_11980391	Not Available	553	Open in IMG/M
3300006969\|Ga0075419_11109745	Not Available	580	Open in IMG/M
3300009094\|Ga0111539_12853910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	559	Open in IMG/M
3300009094\|Ga0111539_13126482	Not Available	534	Open in IMG/M
3300009098\|Ga0105245_11970759	Not Available	637	Open in IMG/M
3300009100\|Ga0075418_10157654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2416	Open in IMG/M
3300009100\|Ga0075418_10230545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1972	Open in IMG/M
3300009100\|Ga0075418_11533134	Not Available	723	Open in IMG/M
3300009100\|Ga0075418_12665069	Not Available	546	Open in IMG/M
3300009101\|Ga0105247_10260286	Not Available	1189	Open in IMG/M
3300009101\|Ga0105247_10781739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300009146\|Ga0105091_10438119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300009146\|Ga0105091_10664811	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300009147\|Ga0114129_12964316	Not Available	559	Open in IMG/M
3300009156\|Ga0111538_10496999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1546	Open in IMG/M
3300009156\|Ga0111538_11180389	Not Available	967	Open in IMG/M
3300009156\|Ga0111538_13088552	Not Available	581	Open in IMG/M
3300009156\|Ga0111538_13776997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	524	Open in IMG/M
3300009157\|Ga0105092_10866069	Not Available	532	Open in IMG/M
3300009174\|Ga0105241_11481107	Not Available	652	Open in IMG/M
3300009176\|Ga0105242_10472619	Not Available	1186	Open in IMG/M
3300009177\|Ga0105248_11713001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300009545\|Ga0105237_11332029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300010397\|Ga0134124_10343524	Not Available	1404	Open in IMG/M
3300010397\|Ga0134124_10375304	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300010403\|Ga0134123_10404352	Not Available	1253	Open in IMG/M
3300011417\|Ga0137326_1124748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300011439\|Ga0137432_1231489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300012902\|Ga0157291_10356518	Not Available	527	Open in IMG/M
3300012908\|Ga0157286_10076117	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012910\|Ga0157308_10287886	Not Available	596	Open in IMG/M
3300012951\|Ga0164300_10684690	Not Available	618	Open in IMG/M
3300012957\|Ga0164303_11452695	Not Available	515	Open in IMG/M
3300012960\|Ga0164301_11457443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300012985\|Ga0164308_12277589	Not Available	504	Open in IMG/M
3300013297\|Ga0157378_10906593	Not Available	912	Open in IMG/M
3300013308\|Ga0157375_10482365	Not Available	1405	Open in IMG/M
3300013308\|Ga0157375_12857899	Not Available	577	Open in IMG/M
3300014325\|Ga0163163_13306609	Not Available	503	Open in IMG/M
3300014326\|Ga0157380_10086259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2579	Open in IMG/M
3300014326\|Ga0157380_13103001	Not Available	530	Open in IMG/M
3300014968\|Ga0157379_10712745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300015374\|Ga0132255_102407226	Not Available	804	Open in IMG/M
3300017792\|Ga0163161_10137218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1850	Open in IMG/M
3300017965\|Ga0190266_10741852	Not Available	620	Open in IMG/M
3300018422\|Ga0190265_11774878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300018422\|Ga0190265_12504995	Not Available	615	Open in IMG/M
3300018476\|Ga0190274_10540507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1177	Open in IMG/M
3300018476\|Ga0190274_11763128	Not Available	714	Open in IMG/M
3300019377\|Ga0190264_10361479	Not Available	918	Open in IMG/M
3300020581\|Ga0210399_11090098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300021088\|Ga0210404_10241474	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300021168\|Ga0210406_10237045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1502	Open in IMG/M
3300021178\|Ga0210408_11428652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300021432\|Ga0210384_10385074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1263	Open in IMG/M
3300024288\|Ga0179589_10623509	Not Available	506	Open in IMG/M
3300024347\|Ga0179591_1222245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2230	Open in IMG/M
3300025931\|Ga0207644_11251866	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300025940\|Ga0207691_10633508	Not Available	904	Open in IMG/M
3300026116\|Ga0207674_10958453	Not Available	824	Open in IMG/M
3300026118\|Ga0207675_101940201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300026121\|Ga0207683_11270308	Not Available	682	Open in IMG/M
3300027873\|Ga0209814_10366145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	632	Open in IMG/M
3300027909\|Ga0209382_10013651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9982	Open in IMG/M
3300027909\|Ga0209382_10173795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2483	Open in IMG/M
3300027909\|Ga0209382_10481189	Not Available	1370	Open in IMG/M
3300028380\|Ga0268265_11618857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300028381\|Ga0268264_10346581	Not Available	1412	Open in IMG/M
3300028592\|Ga0247822_11424107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	584	Open in IMG/M
3300028814\|Ga0307302_10670688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	515	Open in IMG/M
3300028889\|Ga0247827_10734909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300031716\|Ga0310813_11517509	Not Available	624	Open in IMG/M
3300032000\|Ga0310903_10639783	Not Available	570	Open in IMG/M
3300033550\|Ga0247829_10559140	Not Available	950	Open in IMG/M
3300033551\|Ga0247830_10052352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2686	Open in IMG/M
3300034113\|Ga0364937_151277	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.94%
Environmental	Environmental	42.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.94%
Terrestrial	Environmental → Terrestrial	38.10%
Aquatic	Environmental → Aquatic	3.97%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.24%
Soil	Environmental → Terrestrial → Soil	37.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.32%
Freshwater	Environmental → Aquatic → Freshwater	2.38%
Roots	Host-Associated → Plants → Roots	2.38%
Sediment	Environmental → Aquatic → Sediment	1.59%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.38%
Loam	Environmental → Terrestrial → Soil → Loam	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.59%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.59%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.59%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	27.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01983250	2140918013	Soil	LILVEHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVSGADPTAPLIVKPVPMHILLTALEELLPSTPRVS
ICChiseqgaiiDRAFT_05751432	3300000033	Soil	GLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPXDRLMTALEELLPRTPRVS*
ICChiseqgaiiFebDRAFT_109857732	3300000363	Soil	ILVEHDGLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPXDRLMTALEELLPRTPRVS*
INPhiseqgaiiFebDRAFT_1003307842	3300000364	Soil	MEHPALRGRSILVVXXEXLIAXDIVQALEKAGANATMTTTVRHALILIEHDGLXGAIMXHGLTDGDSTXVCARXKERGIPYLSYXGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS*
JGI11643J11755_116428703	3300000787	Soil	MDIVDALESAGANTTMTTTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALE
JGI11643J11755_117486601	3300000787	Soil	ALENAGANATMSTTVRHALILVEHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVSGADPTAPLIVKPVPMHILLTALEELLPSTPRVS*
JGI10216J12902_1106794123	3300000956	Soil	ALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS*
Ga0062593_1032979291	3300004114	Soil	GAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRSLS*
Ga0063356_1032817121	3300004463	Arabidopsis Thaliana Rhizosphere	VTATTTVRHALILIEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPEEGATLGGPHVTKPAPMDVLLTALSDLLPLTPRIS*
Ga0062595_1024079892	3300004479	Soil	MLIALEIVTALEQAGTYATTTSTVRHALILADHDGLSAAIIDHALSDGDSTALCRRLAARDIPYVSYSGYEPAVGASENALFISKPVPMDELLTGVESLLAARPPR
Ga0062592_1021269121	3300004480	Soil	RAGANATTTTTVRHALILAEHDGLSAAIMDHALSDGDSTKLCARLKERGIPYLSYSGYEPVPGASTNAPHIMKPATMDVLMSAMENLLAGPPRIS*
Ga0062594_1020372521	3300005093	Soil	VSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070670_1006199751	3300005331	Switchgrass Rhizosphere	HATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS*
Ga0070682_1016208532	3300005337	Corn Rhizosphere	NEVLIAMEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070668_1015438341	3300005347	Switchgrass Rhizosphere	AALEDAGAFVTATTTVRHALILIEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPKEGAILDAPHVSKPATMETLLTALSDLLPLTPRVS*
Ga0070675_1013805961	3300005354	Miscanthus Rhizosphere	HALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0070659_1004305521	3300005366	Corn Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRGWS
Ga0070714_1015217161	3300005435	Agricultural Soil	VRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT*
Ga0070662_1007131262	3300005457	Corn Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRSLS*
Ga0070662_1016615451	3300005457	Corn Rhizosphere	SGAIMDHSLSDGQHQLVRSPERAWYPLSSYSGYTAVSGPDPTAPLIVKPVPMHILLTALEELLPSAPRVS*
Ga0070685_114282382	3300005466	Switchgrass Rhizosphere	LIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070664_1023200541	3300005564	Corn Rhizosphere	MTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0068859_1024995452	3300005617	Switchgrass Rhizosphere	MVAALENAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0068864_1008800182	3300005618	Switchgrass Rhizosphere	VTATTTVRHALIWIEHDGLVAATMDHALADGDSTEVCARLTARDIPYVSYSEGASPDARSSKPQSMNTLLGEVEKLLICKDSQGGRSL*
Ga0068863_1015669862	3300005841	Switchgrass Rhizosphere	QTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCGRLKARGIPYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0068858_1006545871	3300005842	Switchgrass Rhizosphere	AIMDHSLSDGQHQLVRSPERAWYPLSSYSGYTAVSGPDPTAPLIVKPVPMHILLTALEELLPSAPRVS*
Ga0068860_1026231232	3300005843	Switchgrass Rhizosphere	TVRHALILVEHDGLSGAIMDNALSDGDSTALCVRLKERGIPYISYTGYLAVAGADPAARHIAKPVPMDTLMSALEELLPSTPRIS*
Ga0075367_1000415616	3300006178	Populus Endosphere	MTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYISYSGYLAVSGADPKARHIVKPVPMDTLLSALEELLPSKPRIS*
Ga0075367_102092393	3300006178	Populus Endosphere	ALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSRSLCARLKERGIPYISYTGYAAVSGADPAAPHIWKPVPMDTLMSALEELLPSTPRIS*
Ga0075428_1001286311	3300006844	Populus Rhizosphere	GWDIREALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTDVCVRLKARGIPYVTYSGYDPVQGAILDAPHVSKPGTMDVLLTALEALLPRTPRVS*
Ga0075428_1001905093	3300006844	Populus Rhizosphere	VTNTVRHALILVEHDGLSAAIMDHALSDGDSIALCARLKERGIPYLSYSGYSAVHGADPDASHIMKPVSMDVLMTALAALLPAVPRVS*
Ga0075428_1002267437	3300006844	Populus Rhizosphere	LIGMDIRAALEAAGAHVTATTTVRHALILIEHDGLAGVILDHALSDGDSTEVRVHLKARGIPYVTYSGYAPEEGATLGGPHVTKPAPMDVLLTALSDLLPLTPRVS*
Ga0075428_1012425241	3300006844	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSDLLPLTPRVS*
Ga0075421_1000686511	3300006845	Populus Rhizosphere	EGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075421_1005295671	3300006845	Populus Rhizosphere	EGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSIAVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPMRVS*
Ga0075421_1005553433	3300006845	Populus Rhizosphere	IREALEKAGAHVTSTTTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0075431_1001669401	3300006847	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSD
Ga0075431_1002819053	3300006847	Populus Rhizosphere	VIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAISGADLTAPLIVKPVPMHILLTALEELLPSTPRVS*
Ga0075420_1004241871	3300006853	Populus Rhizosphere	KAGAHVTATTTVSHALILVEHDGLAGAIMDHALKDGDSTELCARLIAQGIPYVSYSGFDPVKGASPDAPFVNKPASMNTLLGVLEKLLIARKAVP*
Ga0075420_1014856061	3300006853	Populus Rhizosphere	MDIVAALENAGANATMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPMDRLMTALEELLPRTPRVS*
Ga0075420_1017301022	3300006853	Populus Rhizosphere	TTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0075425_1001673875	3300006854	Populus Rhizosphere	LIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS*
Ga0075434_1006916322	3300006871	Populus Rhizosphere	VLIGMDIRKALEAAGAHVTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVEGASPGAPFVSKPTSMNTLLGVLEKLLIARMAGT*
Ga0075429_1006069544	3300006880	Populus Rhizosphere	IGWDIREALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTEVCVRLKARGIPYVTYCGYNPVEGAILDAPHVSKPATMDVLLTALEALLPRTPRVS*
Ga0075429_1016891521	3300006880	Populus Rhizosphere	IAMDIVAALENAGAHATMTTTVRHALILVEHDGLSGVIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAISGADLTAPLIVKPVPMHILLTALEELLPSTPRVS*
Ga0079215_109155811	3300006894	Agricultural Soil	MLIGMDIRSALEEAGAHVTATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLLARGIPYVSYSGFDPVKGASPDAPFVSKPSSMNTLLGVLEKLLIARA*
Ga0075424_1001288428	3300006904	Populus Rhizosphere	ALILVNHDGLAGAIMDHALADGDSTELCARLTARDIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRTHK*
Ga0075424_1006047132	3300006904	Populus Rhizosphere	ATMTTTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS*
Ga0075436_1003579911	3300006914	Populus Rhizosphere	HALILVNHDGLAGAIMDHALADGDSTELCARLTARDIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRTHK*
Ga0079219_119803911	3300006954	Agricultural Soil	NHDGLAGAIMDHGLSDGDSSEVCARLKARGIPYVSYSLYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRVS*
Ga0075419_111097452	3300006969	Populus Rhizosphere	ADHDGLAGAIMDHGLTDGDSTIVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLSGRPVRVS*
Ga0111539_128539102	3300009094	Populus Rhizosphere	AKALEGAGANATLTTTARHAMILADHDGLAGAIMDHGLTDGDSMAVCARLKERGIPYISYTGYAVVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0111539_131264821	3300009094	Populus Rhizosphere	SAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRLS*
Ga0105245_119707591	3300009098	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCARLKARGIPCVSYSGYEPVPGADPDAPFITKPVSMNALMSAMEDL
Ga0075418_101576541	3300009100	Populus Rhizosphere	MDIAKALESAGANATMTTSARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_102305455	3300009100	Populus Rhizosphere	AGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSTLVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_115331341	3300009100	Populus Rhizosphere	NATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_126650691	3300009100	Populus Rhizosphere	ATTTVRHALILIEHDGLAGAIMDHALADGDSTDVCVRLKARGIPYVTYSGYDPVQGAILDAPHVSKPGTMDVLLTALEALLPRTPRVS*
Ga0105247_102602861	3300009101	Switchgrass Rhizosphere	EVLIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRWS*
Ga0105247_107817392	3300009101	Switchgrass Rhizosphere	ENAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0105091_104381191	3300009146	Freshwater Sediment	MDIRAALEGAGAQVTQTTTVRHALILIEHDGLAGAIMDHALGDGDSTEVCARLKARGIPYVTYSGYDPVEGCLGAPHVSKPATMDTLLTALSDLLPIPPRVSWAIRTQYLAGALTG*
Ga0105091_106648111	3300009146	Freshwater Sediment	TTDTVRHALILAEHDGLAAAIMDHALSDGDSTQLCARLKARGIPYVSYSGYGPVEGASENLVSISKPVTMDVLMNALEGLLVGKPPRLS*
Ga0114129_129643161	3300009147	Populus Rhizosphere	KAGAHVTSTTTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0111538_104969991	3300009156	Populus Rhizosphere	ATTTVRHALILVEHDRLAAAIMDHALADGDSTELCARLTARGIPYISYSGFVPGQGASTNAPFVSKPASMDTLLGAVEKLLVGRPASATRPNAE*
Ga0111538_111803892	3300009156	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSDLLPLT*
Ga0111538_130885521	3300009156	Populus Rhizosphere	MDIAKALENAGANATMTTTARHAMILADHDGLAGAIMDHGLTHGDSTAVCARLNERGIPYISYTGYAAVAGADPAAPHINKPSA*
Ga0111538_137769972	3300009156	Populus Rhizosphere	GANATLTTTARHAMILADHDGLAGAIMDHGLTDGDSMAVCARLKERGIPYISYTGYAVVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0105092_108660691	3300009157	Freshwater Sediment	MTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYISYSGYSAVSGADPAAPHISKPVPMDTLMTALEELLPNTPRIS*
Ga0105241_114811071	3300009174	Corn Rhizosphere	NHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRGS*
Ga0105242_104726191	3300009176	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLIGPRRVS*
Ga0105248_117130012	3300009177	Switchgrass Rhizosphere	EQAGAHVTATTTARLLILIEHDGLAAAIMDHALADGDSAEVCARLTARGIPYVSYSGYEPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGGTHGEQTQ*
Ga0105237_113320291	3300009545	Corn Rhizosphere	TATTTARHALILIEHDGLAAAIMDHALADGDSAEVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGR*
Ga0134124_103435241	3300010397	Terrestrial Soil	QTTMTTSARHALILINHDGLAGAILSDGDSSEVCARLKARGIPYVSYSGYEPVPGADPDAPFIAKPANMDVLLSAMEKLLAGPRRWS*
Ga0134124_103753042	3300010397	Terrestrial Soil	ALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS*
Ga0134123_104043522	3300010403	Terrestrial Soil	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRRWS*
Ga0137326_11247481	3300011417	Soil	TATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLTARGIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP*
Ga0137432_12314892	3300011439	Soil	GMDIRSALEEAGANVTATTTVRHALILVEHDGLAAAIMDHALRDGDSTELCARLTARGIPYVSYTGFDPVKGASLDAPFVSKPASMNTLLGVLEKLLIARPQRVS*
Ga0157291_103565182	3300012902	Soil	RHALILIEHDGLAGAIMDHALADGDSTEVRVHLKARGIPYVTYSGYDPVAGASPEAPHVSKPATMETLLTALSDLLPLTPRVS*
Ga0157286_100761172	3300012908	Soil	LENAGANATMTTTARHAMILADHDGLAGAIMDHGLNDGDSTAVCARLKERGIPYISYSGYSAVAGADPAAPFISKPVSMDVLMSALEDLLSDRPARVS*
Ga0157308_102878861	3300012910	Soil	RHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIPKLASMDVLLSAMEKLLAGPRRGS*
Ga0164300_106846902	3300012951	Soil	MDIAGTLEKAGAHATMTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYTSYSGYLAVAGADSAAPHIAKPVHMDTLMVALEELLPSTPRIS*
Ga0164303_114526952	3300012957	Soil	LILVEHDGLSGAIMDHALSDSDSTALCARLKARGIPYLSYSGYSAVAGAYLATPHITKPVPMDFLMSALEELLPSTPRIS*
Ga0164299_112431122	3300012958	Soil	LIEHDGLSGAIMDHGLTDGDSLQVCARLKERGIPYLSYSGYEPVPGASKDAPFITKPVSMDVLMSAMEELLAGPPRVS*
Ga0164301_114574432	3300012960	Soil	AALEQAGAHVTATTTARHALILIEHDGLAAAIMDHALADGDSADVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGRRHGEQLQ*
Ga0164308_122775892	3300012985	Soil	EHDGLSGAILDRALADSDSTALCARLKERGISYISYSGYAAVSGADPTAPHIVKPVPMHILLTALEELLPSTPRVS*
Ga0157378_109065933	3300013297	Miscanthus Rhizosphere	LILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDARFSAKRASRDMLRVAMEKLLAGPMRGS*
Ga0157375_104823652	3300013308	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRGWS*
Ga0157375_128578991	3300013308	Miscanthus Rhizosphere	TTTVRHALILIEHDGLSGAIMDHGLSDGDSTNLCARLKERGIPYISYSGYVADAGADQAAPHITKPVHMDVLMSALEELLPSTPRNS*
Ga0163163_133066091	3300014325	Switchgrass Rhizosphere	DIAGALEKAGAHATMTTTVHHALILVEHDGLSGAIMDHALSDGESTALCVRLKERGIPYISYTGYLAVAGADPAARHIAKPVPMDTLMSALEELLPSTPRIS*
Ga0157380_100862592	3300014326	Switchgrass Rhizosphere	LLIALDIVQALENAGANATMTTTARHAMILADHDGLAGAIMDHGLNDGDSTAVCARLKKRGIPYISYSGYSAVAGADPAAPFISKPVSMDVLMSALEDLLSGRPARVS*
Ga0157380_131030011	3300014326	Switchgrass Rhizosphere	EKAGARTTMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCARLKKRGIPYISYSGYSAVSGADPAAPHIVKPVHMDTLMTALEELLPSTPRIS*
Ga0157379_107127451	3300014968	Switchgrass Rhizosphere	ILIEHDGLAAAIMDHALADGDSADVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGRRHGEQMQ*
Ga0132255_1024072261	3300015374	Arabidopsis Rhizosphere	ENEVLIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0163161_101372183	3300017792	Switchgrass Rhizosphere	VVEDELLIAMAIVQALEGAGANATMTTTVRHALILVEHDGLSAAILGHALGECDSTELCARLKARGIPYLSYSGYGRVKGASAPHISKPAS
Ga0190266_107418522	3300017965	Soil	TNTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYSGYSSVSGADADAPFISKPVSMSVLMSALENLLAGRPVRVS
Ga0190265_117748781	3300018422	Soil	TPHRDGYCKGLEDAGANATMTTTARHALILIEHDGLAGAIMDHGLTDGDSTTVCVRLKERGIPYVSYSGYEPVKGASLDASHVMKPESMDVLMSAMEKVLARAPRIS
Ga0190265_125049951	3300018422	Soil	TATTTVRHALILVEHDGLSAAIMDHALADGDSTELCVRLRARGIPYVSFSGFDPVKGASPDAPHVSKPATMDVLLSTLAGLLVGRPDRIS
Ga0190274_105405073	3300018476	Soil	EKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS
Ga0190274_117631282	3300018476	Soil	MDIAQALERAGANATTTTTVHHALILVEHDGLAAAIMDHALKDGDSTELCARLKERGIPYVSYSGFDPVKVASMDAPHIMKPESMDVLMSAVEELLAGPPGVS
Ga0190264_103614792	3300019377	Soil	AALEEAGAFVTATTTVRHALILVEHDGLSAAIMDHALADGDSTELCVRLRARGIPYVSFSGFDPVKGASPDAPHVSKPATMDVLLSTLAGLLVGRPDRIS
Ga0210399_110900981	3300020581	Soil	TVRHALILVKHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT
Ga0210404_102414743	3300021088	Soil	LIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS
Ga0210406_102370451	3300021168	Soil	KRWCERHHDDHRSPCADLIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS
Ga0210408_114286521	3300021178	Soil	AAGAHVTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRAHK
Ga0210384_103850741	3300021432	Soil	VTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT
Ga0179589_106235092	3300024288	Vadose Zone Soil	MTTTVRHAIILIAHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVAGADRAAPHITKPVPMDFLISALEELLPSTPRVS
Ga0179591_12222452	3300024347	Vadose Zone Soil	MTTTVRHALILIAHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVAGADQAAPHITKPVPMDFLMSALEELLPSTPRVS
Ga0207644_112518662	3300025931	Switchgrass Rhizosphere	ATMTPTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS
Ga0207691_106335083	3300025940	Miscanthus Rhizosphere	TTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRWS
Ga0207674_109584531	3300026116	Corn Rhizosphere	WRAEVVIVVCALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS
Ga0207675_1019402012	3300026118	Switchgrass Rhizosphere	HVTATTTARHALILIEHDGLAAAIMDHALADGDSAKVCARLTARGIPYVSYSGYDPVKGASPDAPFVRKPESMNTLLGVVEKLLIGGR
Ga0207683_112703081	3300026121	Miscanthus Rhizosphere	EIRAALEDAGAFVTATTTVRHALILLEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPKEGAILDAPHVSKPATMEALLTALSDLLPLTPRVS
Ga0209814_103661452	3300027873	Populus Rhizosphere	MLIGMDIRDALEKAGAHVTATTTVRHALILVEHDSLAGAIMDHALRDGDSTELCARLTAQGIPYVSYSGFDLVKGASPDVPFVRKPASMNTLLGVLEKLLIARKAVP
Ga0209382_1001365122	3300027909	Populus Rhizosphere	ALEGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS
Ga0209382_101737956	3300027909	Populus Rhizosphere	AGAHVTATTTVRHALILIEHDGLAGVILDHALSDGDSTEVRVHLKARGIPYVTYSGYAPEEGATLDGPHVTKPALMDVLLTALSDLLPLTPRIS
Ga0209382_104811891	3300027909	Populus Rhizosphere	ALEGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSIAVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPMRVS
Ga0268265_116188572	3300028380	Switchgrass Rhizosphere	VEHDGLSAAIVDHGLNDGDSTQLCARLKARGIPYVSYSGFDPVEGADNDAPYISKPASMETILSTVEAMLKAPARIS
Ga0268264_103465813	3300028381	Switchgrass Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRWS
Ga0247822_114241071	3300028592	Soil	IDIRSALEEAGAHVTSTTTVRHALMLAEDDGLAGAIMDHALKDGDSTELCARLIAQGIPYVSYSGFDLVKGASPDAPFVNKPASMNTLLGVLEKLLIARKAVP
Ga0307302_106706881	3300028814	Soil	VRHALILVEHDGLSGAIMDHALADGDSTELCIRLKARGIPYVSYSGFDPVKGADPEAPWVGKPASMDTLLNTLAGLLVARAERVS
Ga0247827_107349091	3300028889	Soil	SLAVILVEHDGLAGAIMDHALADGDSTELCARLTARGIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP
Ga0310813_115175092	3300031716	Soil	MDIVAALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCARLKKRGIPYISYSGYAAVSGADPAAPHIVKPVPMHILLTALEELLPSTLRIS
Ga0310903_106397831	3300032000	Soil	KAGAHVTATTTVRHALILVEHDGLAGAIMDHALRDGDSTELCARLTAQGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARKAVP
Ga0247829_105591401	3300033550	Soil	EEAGAHVTSTTTVRHALMLAEDDGLAGAIMDHALKDGDSTELCARLTAQGIPYVSYSGFDLVKGASPDVPFVRKPASMNTLLGVLEKLLIARKAVP
Ga0247830_100523523	3300033551	Soil	MLIGMDIRSALEQAGAHVTATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLTARAIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP
Ga0364937_151277_235_474	3300034113	Sediment	LIEHDGLAAAIMDHALADGDSTDLCARLLTRGIPYVSYSGFDPVKGASLDAPFVSKPATMDTLLSAVESLLAGQPHRIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences