Metagenome / Metatranscriptome Family F066950

Basic Information
Family ID	F066950
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	44 residues
Representative Sequence	TTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSGL
Number of Associated Samples	113
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.94 %
% of genes near scaffold ends (potentially truncated)	92.06 %
% of genes from short scaffolds (< 2000 bps)	93.65 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Most Common Taxonomy
Group	Bacteria (62.698 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.952 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.714 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.03% β-sheet: 0.00% Coil/Unstructured: 61.97%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF13280	WYL	4.76
PF03588	Leu_Phe_trans	4.76
PF13460	NAD_binding_10	3.17
PF13207	AAA_17	2.38
PF08818	DUF1801	2.38
PF08327	AHSA1	2.38
PF01548	DEDD_Tnp_IS110	2.38
PF00903	Glyoxalase	1.59
PF08448	PAS_4	1.59
PF13787	HXXEE	1.59
PF00296	Bac_luciferase	1.59
PF11716	MDMPI_N	1.59
PF04607	RelA_SpoT	0.79
PF00196	GerE	0.79
PF13458	Peripla_BP_6	0.79
PF12802	MarR_2	0.79
PF01042	Ribonuc_L-PSP	0.79
PF00440	TetR_N	0.79
PF00766	ETF_alpha	0.79
PF02371	Transposase_20	0.79
PF04191	PEMT	0.79
PF13581	HATPase_c_2	0.79
PF04978	DUF664	0.79
PF04266	ASCH	0.79
PF01638	HxlR	0.79
PF04672	Methyltransf_19	0.79
PF09995	MPAB_Lcp_cat	0.79
PF13751	DDE_Tnp_1_6	0.79
PF01799	Fer2_2	0.79
PF02738	MoCoBD_1	0.79
PF02687	FtsX	0.79
PF07883	Cupin_2	0.79
PF04402	SIMPL	0.79
PF04185	Phosphoesterase	0.79
PF01370	Epimerase	0.79
PF12833	HTH_18	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG2360	Leu/Phe-tRNA-protein transferase	Posttranslational modification, protein turnover, chaperones [O]	4.76
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.17
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	2.38
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	2.38
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	2.38
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.59
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.79
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.79
COG2411	Predicted RNA-binding protein, contains PUA-like ASCH domain	General function prediction only [R]	0.79
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	0.79
COG3097	Uncharacterized conserved protein YqfB, UPF0267 family	Function unknown [S]	0.79
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	0.79
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.79
COG4405	Predicted RNA-binding protein YhfF, contains PUA-like ASCH domain	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.70 %
Unclassified	root	N/A	37.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.70 %
Unclassified	root	N/A	37.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.70 %
Unclassified	root	N/A	37.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.17 %
Unclassified	root	N/A	37.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.41 %
Unclassified	root	N/A	37.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.38 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.51 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.38 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	7.14 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.38 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.38 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.38 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.59 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.79 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.79 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	7.14 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.38 %
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	1.59 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.59 %
Rubellimicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium	0.79 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.79 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.79 %
Ornithinimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae	0.79 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.79 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4.76 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.38 %
Leekyejoonella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella	1.59 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.59 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	0.79 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.79 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.79 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.79 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.79 %
Ornithinimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Ornithinimicrobium	0.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.38 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	1.59 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.59 %
unclassified Ornithinimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Ornithinimicrobium → unclassified Ornithinimicrobium	0.79 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.79 %
Mycobacterium haemophilum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium haemophilum	0.79 %
Actinomadura formosensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura formosensis	0.79 %
Streptomyces puniciscabiei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces puniciscabiei	0.79 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	0.79 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.30 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.38 %
Leekyejoonella antrihumi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	1.59 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.59 %
Ornithinimicrobium sp. CNJ-824	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Ornithinimicrobium → unclassified Ornithinimicrobium → Ornithinimicrobium sp. CNJ-824	0.79 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.79 %
Mycobacterium haemophilum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium haemophilum	0.79 %
Actinomadura formosensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura formosensis	0.79 %
Streptomyces puniciscabiei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces puniciscabiei	0.79 %
Rubellimicrobium aerolatum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	0.79 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908016\|OU_2_1_1_newblercontig00634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1742	Open in IMG/M
2166559006\|FI_contig26644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	582	Open in IMG/M
3300001356\|JGI12269J14319_10009596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7958	Open in IMG/M
3300002245\|JGIcombinedJ26739_101590429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300005177\|Ga0066690_10181584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1395	Open in IMG/M
3300005179\|Ga0066684_10897599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300005329\|Ga0070683_102230884	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005334\|Ga0068869_101898559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	534	Open in IMG/M
3300005337\|Ga0070682_100541259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	909	Open in IMG/M
3300005435\|Ga0070714_100428199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1254	Open in IMG/M
3300005436\|Ga0070713_100264378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1573	Open in IMG/M
3300005439\|Ga0070711_101217604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300005439\|Ga0070711_101563946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300005455\|Ga0070663_100074535	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300005537\|Ga0070730_10910550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300005602\|Ga0070762_11157659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	534	Open in IMG/M
3300005718\|Ga0068866_10496583	Not Available	807	Open in IMG/M
3300005764\|Ga0066903_100582419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1932	Open in IMG/M
3300005764\|Ga0066903_101467867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1285	Open in IMG/M
3300006028\|Ga0070717_11098180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	724	Open in IMG/M
3300006028\|Ga0070717_11249924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300006176\|Ga0070765_100419628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1251	Open in IMG/M
3300009683\|Ga0116224_10403595	Not Available	650	Open in IMG/M
3300010048\|Ga0126373_10738624	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1044	Open in IMG/M
3300010048\|Ga0126373_12044428	Not Available	635	Open in IMG/M
3300010048\|Ga0126373_12640391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	560	Open in IMG/M
3300010329\|Ga0134111_10213907	Not Available	782	Open in IMG/M
3300010360\|Ga0126372_11961545	All Organisms → cellular organisms → Bacteria → Terrabacteria group	631	Open in IMG/M
3300010366\|Ga0126379_10499277	Not Available	1288	Open in IMG/M
3300010366\|Ga0126379_11299205	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300010366\|Ga0126379_11581196	Not Available	761	Open in IMG/M
3300010396\|Ga0134126_12195909	Not Available	602	Open in IMG/M
3300010396\|Ga0134126_12619103	Not Available	548	Open in IMG/M
3300010400\|Ga0134122_10700453	Not Available	952	Open in IMG/M
3300012199\|Ga0137383_10576707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	823	Open in IMG/M
3300012207\|Ga0137381_11170716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	661	Open in IMG/M
3300012210\|Ga0137378_11061823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Leekyejoonella → Leekyejoonella antrihumi	724	Open in IMG/M
3300012349\|Ga0137387_10694104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300012356\|Ga0137371_11430160	Not Available	506	Open in IMG/M
3300012987\|Ga0164307_10369056	Not Available	1048	Open in IMG/M
3300013306\|Ga0163162_11256798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300013307\|Ga0157372_11497609	Not Available	777	Open in IMG/M
3300015359\|Ga0134085_10457602	Not Available	579	Open in IMG/M
3300015373\|Ga0132257_101889032	Not Available	768	Open in IMG/M
3300016294\|Ga0182041_10939236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	779	Open in IMG/M
3300016357\|Ga0182032_11572706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	572	Open in IMG/M
3300017924\|Ga0187820_1058279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1055	Open in IMG/M
3300017933\|Ga0187801_10407349	Not Available	566	Open in IMG/M
3300017937\|Ga0187809_10144541	Not Available	820	Open in IMG/M
3300017966\|Ga0187776_10962587	Not Available	624	Open in IMG/M
3300017972\|Ga0187781_10228503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Rubellimicrobium → Rubellimicrobium aerolatum	1315	Open in IMG/M
3300017973\|Ga0187780_10992323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300018007\|Ga0187805_10056482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1764	Open in IMG/M
3300020069\|Ga0197907_11353825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Ornithinimicrobiaceae → Ornithinimicrobium → unclassified Ornithinimicrobium → Ornithinimicrobium sp. CNJ-824	692	Open in IMG/M
3300020070\|Ga0206356_11483307	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300020070\|Ga0206356_11885623	Not Available	1196	Open in IMG/M
3300020082\|Ga0206353_10851390	All Organisms → cellular organisms → Bacteria → Terrabacteria group	623	Open in IMG/M
3300020580\|Ga0210403_11286875	Not Available	559	Open in IMG/M
3300021178\|Ga0210408_10641048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura formosensis	839	Open in IMG/M
3300021180\|Ga0210396_10584975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	972	Open in IMG/M
3300021403\|Ga0210397_10298921	Not Available	1182	Open in IMG/M
3300021404\|Ga0210389_11550683	Not Available	503	Open in IMG/M
3300021406\|Ga0210386_10567597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium haemophilum	980	Open in IMG/M
3300021445\|Ga0182009_10579687	Not Available	599	Open in IMG/M
3300021560\|Ga0126371_13186686	Not Available	555	Open in IMG/M
3300024181\|Ga0247693_1025042	Not Available	809	Open in IMG/M
3300025906\|Ga0207699_11241518	Not Available	552	Open in IMG/M
3300025908\|Ga0207643_10580199	Not Available	721	Open in IMG/M
3300025912\|Ga0207707_11124097	Not Available	639	Open in IMG/M
3300025916\|Ga0207663_11701031	Not Available	507	Open in IMG/M
3300025919\|Ga0207657_10174115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1742	Open in IMG/M
3300025928\|Ga0207700_12020790	Not Available	503	Open in IMG/M
3300025929\|Ga0207664_10569549	Not Available	1017	Open in IMG/M
3300025932\|Ga0207690_11165166	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300025934\|Ga0207686_10057083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2456	Open in IMG/M
3300026035\|Ga0207703_11708998	Not Available	605	Open in IMG/M
3300026088\|Ga0207641_12054099	Not Available	572	Open in IMG/M
3300026374\|Ga0257146_1067904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300026557\|Ga0179587_10168813	Not Available	1372	Open in IMG/M
3300027905\|Ga0209415_10287872	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300028872\|Ga0307314_10036152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1194	Open in IMG/M
3300028906\|Ga0308309_10354589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1251	Open in IMG/M
3300031152\|Ga0307501_10029830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300031544\|Ga0318534_10648270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300031572\|Ga0318515_10672081	Not Available	549	Open in IMG/M
3300031573\|Ga0310915_10408146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	965	Open in IMG/M
3300031640\|Ga0318555_10180602	Not Available	1135	Open in IMG/M
3300031681\|Ga0318572_10739490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	585	Open in IMG/M
3300031682\|Ga0318560_10152581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1223	Open in IMG/M
3300031708\|Ga0310686_104455914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2104	Open in IMG/M
3300031713\|Ga0318496_10168842	Not Available	1198	Open in IMG/M
3300031713\|Ga0318496_10599644	Not Available	608	Open in IMG/M
3300031747\|Ga0318502_10413659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	803	Open in IMG/M
3300031765\|Ga0318554_10844357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces puniciscabiei	511	Open in IMG/M
3300031771\|Ga0318546_10823298	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031792\|Ga0318529_10448491	Not Available	600	Open in IMG/M
3300031795\|Ga0318557_10472683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	576	Open in IMG/M
3300031797\|Ga0318550_10279072	Not Available	811	Open in IMG/M
3300031799\|Ga0318565_10077327	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300031819\|Ga0318568_10787382	Not Available	590	Open in IMG/M
3300031832\|Ga0318499_10199537	Not Available	780	Open in IMG/M
3300031845\|Ga0318511_10020332	All Organisms → cellular organisms → Bacteria	2420	Open in IMG/M
3300031880\|Ga0318544_10113914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1025	Open in IMG/M
3300031893\|Ga0318536_10393809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	699	Open in IMG/M
3300031894\|Ga0318522_10029081	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300031894\|Ga0318522_10151830	Not Available	873	Open in IMG/M
3300031896\|Ga0318551_10485908	Not Available	707	Open in IMG/M
3300031897\|Ga0318520_10487524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	760	Open in IMG/M
3300031938\|Ga0308175_101625015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	723	Open in IMG/M
3300031942\|Ga0310916_11140297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	646	Open in IMG/M
3300031947\|Ga0310909_10256871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	1460	Open in IMG/M
3300031954\|Ga0306926_10761029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300032066\|Ga0318514_10111279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1397	Open in IMG/M
3300032068\|Ga0318553_10296368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300032089\|Ga0318525_10656102	Not Available	534	Open in IMG/M
3300032090\|Ga0318518_10722838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M
3300032261\|Ga0306920_102197094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	767	Open in IMG/M
3300032261\|Ga0306920_103334159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	598	Open in IMG/M
3300032783\|Ga0335079_11323041	Not Available	719	Open in IMG/M
3300032893\|Ga0335069_10051394	All Organisms → cellular organisms → Bacteria	5406	Open in IMG/M
3300032896\|Ga0335075_10018797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10241	Open in IMG/M
3300032896\|Ga0335075_10955151	Not Available	776	Open in IMG/M
3300032897\|Ga0335071_10671905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	986	Open in IMG/M
3300033134\|Ga0335073_11354581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300033158\|Ga0335077_10536909	Not Available	1231	Open in IMG/M
3300033289\|Ga0310914_10117192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2312	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.48%
Host-Associated	Host-Associated	9.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.51%
Plants	Host-Associated → Plants	9.52%
Aquatic	Environmental → Aquatic	3.17%
Unclassified	Environmental → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.97%
Freshwater	Environmental → Aquatic → Freshwater	3.17%
Unclassified	Environmental → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.49%
Loam	Environmental → Terrestrial → Soil → Loam	15.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.59%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.79%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.35%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	3.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.38%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.38%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.38%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066950

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_02459970	2124908016		MPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
FI_00458330	2166559006	Grass Soil	PTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIIGAL
JGI12269J14319_100095962	3300001356	Peatlands Soil	MANTGIGSPDQIRSDLSARLDRFGLSYLVAGEDSLPGLAEIVGGL*
JGIcombinedJ26739_1015904292	3300002245	Forest Soil	TIYIGSPDQIRADLQARRQRFGLSYLVVGEDGLPALAEIVSGL*
Ga0066690_101815843	3300005177	Soil	FIGSPAQIRDDLIARRARFGLSYLVASESNLPALAEVVSAL*
Ga0066684_108975992	3300005179	Soil	FIGSPAQIRDDLIARRARFGLSYLVAGEGALPALAAVTGAL*
Ga0070683_1022308842	3300005329	Corn Rhizosphere	TAWQMPTVFIGSAAQIREDLHARRERFGLSYLVAAEDARPALTEIISGL*
Ga0068869_1018985591	3300005334	Miscanthus Rhizosphere	TVWQMPTIFVGSAEQIRHDLRDRQERHGLSYLIGSDRDLATLTDIISGL*
Ga0070682_1005412591	3300005337	Corn Rhizosphere	TTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL*
Ga0070714_1004281991	3300005435	Agricultural Soil	IGSAAQIREDLHARRERFGLSYLVAAEDARPALTEIISGL*
Ga0070713_1002643783	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ETAWQMPTIFIGSAAQIREDLHARRERFGLSYLVAPETARPALTEIISGL*
Ga0070711_1012176042	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	FIGSPAQIRDDLIARRARFGLSYLVASESALPALAAVTGAL*
Ga0070711_1015639461	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	WTGISAEQVWQMPTVFVGSPDQIRADLRERRQRFGLSYLVAGEDSRGALAEVISGL*
Ga0070663_1000745351	3300005455	Corn Rhizosphere	IDAETVWEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL*
Ga0070730_109105502	3300005537	Surface Soil	VWQMPTIFIGSPEQIRADLSARRDRFGLSYLVVGEDGWPALAEIVSGL*
Ga0070762_111576591	3300005602	Soil	QIRLDLLARRERFGLSYLVVGEDSQPALAEIISGL*
Ga0068866_104965831	3300005718	Miscanthus Rhizosphere	AQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL*
Ga0066903_1005824191	3300005764	Tropical Forest Soil	AVWQMPTIFIGSLDQIRADLLARRERFGLSYLVVGEGEQPALAEIISGL*
Ga0066903_1014678673	3300005764	Tropical Forest Soil	GIDVEAVWQMPTIFIGSLGQIRADLRARRERFGLSYLVVGEDGLPSLAEIVSGL*
Ga0070717_110981801	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	QIREDLHARRERFGLSYLVAAEDARPALTEIISGL*
Ga0070717_112499242	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	WQMPTIFIGSAAQIREDLHARRERFGLSYLVAPETARPALTEIISGL*
Ga0070765_1004196283	3300006176	Soil	WQMPTIFIGSAEQIRSDLQQRQQRYGLSYLVAGEDALPVLAEIASGL*
Ga0116224_104035952	3300009683	Peatlands Soil	WQMPTIFIGSLDQIRSDLQERQQRFGLSYLVAGEDGLPVLAEIASGL*
Ga0126373_107386241	3300010048	Tropical Forest Soil	DAEEVWQMPTIFIGSLDQIRADLQARRERFGLSYLVVGEEGLPVLTEIISGL*
Ga0126373_120444282	3300010048	Tropical Forest Soil	EQIRSDLQERRERFGLSYLVVGEDSLPTLTEIITGL*
Ga0126373_126403911	3300010048	Tropical Forest Soil	PEQIRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL*
Ga0134111_102139072	3300010329	Grasslands Soil	DAETVWEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAENALPALAEIIGAL*
Ga0126372_119615452	3300010360	Tropical Forest Soil	IFIGSPQQIRSDLRARQDRFGLSYLVAGENDLPTLAAIVSVL*
Ga0126379_104992774	3300010366	Tropical Forest Soil	FIGSLDQIRADLLARRERFSLSYLVVGEDGLPALAEIVSGL*
Ga0126379_112992051	3300010366	Tropical Forest Soil	TIFIGSPDQIRADLHARRERFGLSYLVAGEDNLPALAEIIGGL*
Ga0126379_115811962	3300010366	Tropical Forest Soil	IRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL*
Ga0134126_121959091	3300010396	Terrestrial Soil	AETVWQMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSAL*
Ga0134126_126191031	3300010396	Terrestrial Soil	SPAQIRDDLIARRARFGLSYLVAPESALPALADIISAL*
Ga0134122_107004533	3300010400	Terrestrial Soil	AQIRDDLLARRARFGLSYLVAAEDALPALAEIVGVR*
Ga0137383_105767071	3300012199	Vadose Zone Soil	QIRADLRARRERFGLSYLVAGEEALAALAEIVSGL*
Ga0137381_111707162	3300012207	Vadose Zone Soil	DPETVWEMPVIFIGSPAQIRDDLIARRARFGLSYLVASESTLPALAEIVSAL*
Ga0137378_110618231	3300012210	Vadose Zone Soil	WTGVDVEAVWQMPTMFIGSLDQIRADLRARRERFGLSYLVAGEEALAALAEIVSGL*
Ga0137387_106941041	3300012349	Vadose Zone Soil	VWEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALSEIIGAL*
Ga0137371_114301601	3300012356	Vadose Zone Soil	VFIGSPAQIREDLLARRARFGLSYLVAAESALPALADVVGVL*
Ga0164307_103690561	3300012987	Soil	GSPAQIRDDLLARRARFGLSYLVAAENALPALAEIVGAL*
Ga0163162_112567981	3300013306	Switchgrass Rhizosphere	AETVWEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSAL*
Ga0157372_114976092	3300013307	Corn Rhizosphere	WEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL*
Ga0134085_104576021	3300015359	Grasslands Soil	IHEDLLTRRARFGLSYLVAAESALPALSEVIGAL*
Ga0132257_1018890322	3300015373	Arabidopsis Rhizosphere	GSPAQIRDDLLARRARFGLSYLVAAESALPALGEIVGAL*
Ga0182041_109392361	3300016294	Soil	MPTIFIGSLEQIRSDLQARRERFGLSYLVVGEDGLPALAEIVSGL
Ga0182032_115727061	3300016357	Soil	VETVWQMPTIFIGSPQQIRSDLRARQERFGLSYLVVGENDLPAIAEIVSDL
Ga0187820_10582791	3300017924	Freshwater Sediment	VWQLPTIFIGSAEQIRSDLLERRDRSGLSYRVAGDSALPALAEIAGGL
Ga0187801_104073492	3300017933	Freshwater Sediment	WQMPTIFIGSAAQIRADLRERREIFGLSYLVAGEAALPALAEIASGL
Ga0187809_101445411	3300017937	Freshwater Sediment	MPTIFIGSTEQIRSDLLERRDRCGLSYLVAGAGALPALAEIASGL
Ga0187776_109625872	3300017966	Tropical Peatland	MADADDLHRSPDQIRSDLQDRHQRFGLSYLVAGEDALPMLAEIASGL
Ga0187781_102285031	3300017972	Tropical Peatland	SPDQIRSDLHVRRDRFGLSYLVAGEDNLPALAEIVSGL
Ga0187780_109923231	3300017973	Tropical Peatland	VEALWQMPTVFIGSLDQIRSDLQARRERFGLSYLVAGEDNLPALAEIVSGL
Ga0187805_100564824	3300018007	Freshwater Sediment	TIFIGSAAQIRADLRERREIFGLSYLVAGEAALPALAEIASGL
Ga0197907_113538252	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VWQMPTIFIGSPDQVRSDLQERRERFGLSYLVAGEDSLPVLAEVIRGL
Ga0206356_114833073	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	GTPDQIRADLRARQERFGLSYLVAGQDALPALTSIISGL
Ga0206356_118856231	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	IGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
Ga0206353_108513902	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	DAVWEMPTIFIGTPDQIRADLRARQERFGLSYLVAGQDALPALTSIISGL
Ga0210403_112868752	3300020580	Soil	GSPAQIRDDLLARRARFGLSYLVAAESALPALTKIVSAL
Ga0210408_106410482	3300021178	Soil	SPAQIRDDLIARRARFGLSYLVASESSLPALAEVVSAL
Ga0210396_105849752	3300021180	Soil	SPAQIRDDLLARRARFGLSYLVAAESALPALTKIVSAL
Ga0210397_102989211	3300021403	Soil	AETVWEMPTIFIGSPAQIRDDLLARRARFGLSYLVAGESALPALTEIVSAL
Ga0210389_115506832	3300021404	Soil	TPPVFIGSPAQIRDDLLARRPRFGLSYLVAPESALPALADIVSAL
Ga0210386_105675973	3300021406	Soil	IFIGSPEQIRTDLQARLERFGLSYLVAGEDVRPALAEIIGGLKKDI
Ga0182009_105796871	3300021445	Soil	TTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSGL
Ga0126371_131866861	3300021560	Tropical Forest Soil	SLDQIRADLLARRERFCLSYLVVGEDGLPALAEIVSGL
Ga0247693_10250422	3300024181	Soil	TTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
Ga0207699_112415182	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	GIDAEAAWQMPTIFIGSAAQIREDLHARRERFGLSYLVAAESARPALTEIISGL
Ga0207643_105801991	3300025908	Miscanthus Rhizosphere	FIGSPAQIRDDLLARRARFGLSYLVAAEDALPALAEIVGAL
Ga0207707_111240971	3300025912	Corn Rhizosphere	TFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
Ga0207663_117010312	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VCSPAQIRDDLIARRARFGLSYLVAGESALPALAAVTGAL
Ga0207657_101741153	3300025919	Corn Rhizosphere	IDVEQVWQMPTVFIGSPDQIRADLHARRERFGLSYLVAGEDSQPALAEVISGL
Ga0207700_120207901	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DAETAWQMPTIFIGSAAQIREDLHARRERFGLSYLVAAETARPALTEIISGL
Ga0207664_105695493	3300025929	Agricultural Soil	FIGSAAQIREDLHARRERFGLSYLVAAEDARPALTEIISGL
Ga0207690_111651661	3300025932	Corn Rhizosphere	EQVWQMPTVFIGSPDQIRADLHARRERFGLSYLVAGEDSQSALAEVISGL
Ga0207686_100570835	3300025934	Miscanthus Rhizosphere	MPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSAL
Ga0207703_117089981	3300026035	Switchgrass Rhizosphere	TSFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
Ga0207641_120540992	3300026088	Switchgrass Rhizosphere	SPAQIRDDLLARRARFGLSYLVAAESALPALAEIVGAL
Ga0257146_10679042	3300026374	Soil	VWQMPTVFIGSPAQIRDDLLARRARFGLSYLVAAESALPALADIVSAL
Ga0179587_101688132	3300026557	Vadose Zone Soil	AWQMPTVFIGSPAQIRDDLLARRARFGLSYLVAAESALPALADIVGAL
Ga0209415_102878722	3300027905	Peatlands Soil	MANTGIGSPDQIRSDLSARLDRFGLSYLVAGEDSLPGLAEIVGGL
Ga0307314_100361523	3300028872	Soil	AETVWQMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSAL
Ga0308309_103545891	3300028906	Soil	GSAEQIRSDLQQRQQRYGLSYLVAGEDALPVLAEIASGL
Ga0307501_100298301	3300031152	Soil	WEMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIIGAL
Ga0318534_106482701	3300031544	Soil	VWQMPTIFIGSPDQIRSDLHARRERSGLSYLVAGQDNLPALAEIAGGL
Ga0318515_106720811	3300031572	Soil	FIGSPAQIRDDLRARRDRFGLSYLVVGEDTLPALTGIVGAL
Ga0310915_104081463	3300031573	Soil	ETVWEMPTIFIGSPAQIRDDLMARRARFGLSYLVASESALPALAEIVSAL
Ga0318555_101806023	3300031640	Soil	PTIFIGSPAQIRDDLMARRARFGLSYLVAGESALPALAKIVSAL
Ga0318572_107394901	3300031681	Soil	LDVEAVWQMPTIFIGSPDQIRSDLQARRERFGLSYLVAGEDNLPALAEIIGGL
Ga0318560_101525812	3300031682	Soil	IFIGSPDQIRSDLHARRERFGLSYLVAGEGNLPALAEIAGGL
Ga0310686_1044559144	3300031708	Soil	MANTGIGTPDQIRSDLSARLDRFGLSYLVAGEDSLPGLAEIVGGL
Ga0318496_101688421	3300031713	Soil	VWEMPTIFIGSLAQIRDDLMARRARFGLSYLVAGESALPALAEIVSAL
Ga0318496_105996441	3300031713	Soil	TIFIGSPAQIRDDLMARRARFGLSYLVASESALPALTQVVSAL
Ga0318502_104136591	3300031747	Soil	AETVWQMPTIFIGSPGQIRDDLRARAQRFGLSYLVAPDRDLPTLATIISGL
Ga0318554_108443572	3300031765	Soil	VEAVWQMPTIFIGSPEQIRSDLRARRERFGLSYLVVGEDGLPALTEIVGGL
Ga0318546_108232982	3300031771	Soil	IWQMPTIFIGSPDQIRSDLHARRERFGLSYLVAGEGNLPALAEIAGGL
Ga0318529_104484911	3300031792	Soil	AQIRDDLMARRARFGLSYLVAGESALPALAKIVNAL
Ga0318557_104726831	3300031795	Soil	MPTIFIGSPDQIRSDLQARRERFGLSYLVAGEDNLPALAEIISGL
Ga0318550_102790722	3300031797	Soil	VWQMPTIFVGSLEQIRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL
Ga0318565_100773273	3300031799	Soil	MPTMFIGSPAQIRDDLMARRARFGLSYLVAGESALPALAKIVNAL
Ga0318568_107873821	3300031819	Soil	VWQMPTIFIGSPQQIRSDLRARQERFGLSYLVAGENDLPTLAEIVIDL
Ga0318499_101995373	3300031832	Soil	IFIGSPAQIRDDLMARRARFGLSYLVASESALPALAEIVSAL
Ga0318511_100203324	3300031845	Soil	MPTIFIGSPAQIRDDLMARRARFGLSYLVASESALPALAEIVSAL
Ga0318544_101139141	3300031880	Soil	FVGSLEQIRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL
Ga0318536_103938091	3300031893	Soil	AVWQMPTIFIGSPDQIRSDLQARRERFGLSYLVAGEDNLPALPEIIGGL
Ga0318522_100290811	3300031894	Soil	QMPTIFIGSPDQIRSDLQARRERFGLSYLVAGEDNLPALAEIISGL
Ga0318522_101518301	3300031894	Soil	QIRDDLMARRARFGLSYLVASESALPALAEIVSAL
Ga0318551_104859082	3300031896	Soil	EQIRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL
Ga0318520_104875243	3300031897	Soil	VWQMPTIFIGSPDQIRSDLQARRERFGLSYLVAGEDNLPALAEIVGGL
Ga0308175_1016250151	3300031938	Soil	DAETVWQMPTTFIGSPAQIRDDLLARRARFGLSYLVAAESALPALAEIVSAF
Ga0310916_111402972	3300031942	Soil	IDVETVWQMPTIFIGSPQQIRSDLRARQERFGLSYLVVGENDLPAIAEIVSDL
Ga0310909_102568711	3300031947	Soil	MPTIFIGSLEQIRSDLRARRERFGLSYLVVGEDGLPALAEIVSGL
Ga0306926_107610291	3300031954	Soil	GVDVEAIWQMPTIFIGSPDQIRSDLHARRERFGLSYLVAGEGNLPALAEIAGGL
Ga0318514_101112792	3300032066	Soil	VWQMPTIFIGSPQQIRSDLRARQERFGLSYLVVGENDLPAIAEIVSDL
Ga0318553_102963681	3300032068	Soil	DQIRSDLHARRERSGLSYLVAGQDNLPALAEIAGGL
Ga0318525_106561021	3300032089	Soil	DQIRSDLHARRERFGLSYLVAGEGNLPALAEIAGGL
Ga0318518_107228382	3300032090	Soil	PDQIRSDLQARRERFGLSYLVAGEDNLPALAEIVGGL
Ga0306920_1021970942	3300032261	Soil	EMPTIFIGSPAQIRDDLMARRARFGLSYLVAGESALPALAKIVNAL
Ga0306920_1033341592	3300032261	Soil	QIRSDLQERRQRFGLSYLVAGEDGLPALAEIVSGP
Ga0335079_113230412	3300032783	Soil	AQIRDDLLARQARFGLSYLVAGESALPALTEIVSAL
Ga0335069_100513942	3300032893	Soil	MPTIFIGSPAQIRNDLMARRARFGLSYLVAGESALPALAEIVSAL
Ga0335075_1001879713	3300032896	Soil	FIGSPDQIRADLRERQERFGLSYLVATETALPALAEIASGL
Ga0335075_109551511	3300032896	Soil	WGGIEAEAVWEMPTIFTGSPDQIRTDLHARREQSGLSYLVVGEDSQPVLAEIITGL
Ga0335071_106719051	3300032897	Soil	MPTIVIGSPAQIRNDLMARRARFGLSYLVAGESALPALAEIVSAL
Ga0335073_113545811	3300033134	Soil	EMPTIFIGSPAQIRDDLMARRARFGLSYLVVGESTLPALAEIVSAL
Ga0335077_105369093	3300033158	Soil	IFIGSPAQIRDDLMARRARFGLSYLVVGESALPALAEIVSAL
Ga0310914_101171924	3300033289	Soil	DQIRSDLQARREQFGLSYLVAGEDNLPALAEIVGGL

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign