Metagenome / Metatranscriptome Family F066964

Basic Information
Family ID	F066964
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	64 residues
Representative Sequence	MNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE
Number of Associated Samples	89
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	21.43 %
% of genes near scaffold ends (potentially truncated)	26.98 %
% of genes from short scaffolds (< 2000 bps)	92.06 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Most Common Taxonomy
Group	Unclassified (76.984 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.540 % of family members)
Environment Ontology (ENVO)	Unclassified (46.032 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.778 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.35% β-sheet: 0.00% Coil/Unstructured: 45.65%
Feature Viewer

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Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00291	PALP	2.38
PF03352	Adenine_glyco	1.59
PF12779	WXXGXW	1.59
PF06628	Catalase-rel	0.79
PF00551	Formyl_trans_N	0.79
PF00881	Nitroreductase	0.79
PF09360	zf-CDGSH	0.79
PF01315	Ald_Xan_dh_C	0.79
PF01464	SLT	0.79
PF10282	Lactonase	0.79
PF13242	Hydrolase_like	0.79
PF05721	PhyH	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	1.59
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.79
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
All Organisms	root	All Organisms	23.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
cellular organisms	root	All Organisms → cellular organisms	23.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.38 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.38 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.38 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.38 %
Caballeronia udeis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia udeis	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10448275	Not Available	528	Open in IMG/M
3300002914\|JGI25617J43924_10142793	Not Available	829	Open in IMG/M
3300003505\|JGIcombinedJ51221_10072224	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
3300003505\|JGIcombinedJ51221_10113403	Not Available	1084	Open in IMG/M
3300003505\|JGIcombinedJ51221_10190613	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300004081\|Ga0063454_100357235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia udeis	951	Open in IMG/M
3300004099\|Ga0058900_1316383	Not Available	504	Open in IMG/M
3300005171\|Ga0066677_10111790	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300005174\|Ga0066680_10269965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300005184\|Ga0066671_10294038	Not Available	1016	Open in IMG/M
3300005434\|Ga0070709_10049608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2626	Open in IMG/M
3300005439\|Ga0070711_100081095	All Organisms → cellular organisms → Bacteria → Proteobacteria	2312	Open in IMG/M
3300005560\|Ga0066670_10611247	Not Available	663	Open in IMG/M
3300005569\|Ga0066705_10824372	Not Available	552	Open in IMG/M
3300005764\|Ga0066903_107775956	Not Available	551	Open in IMG/M
3300005921\|Ga0070766_10663997	Not Available	704	Open in IMG/M
3300005983\|Ga0081540_1154669	Not Available	899	Open in IMG/M
3300006175\|Ga0070712_101940316	Not Available	516	Open in IMG/M
3300006176\|Ga0070765_100457362	Not Available	1196	Open in IMG/M
3300006176\|Ga0070765_101088425	Not Available	755	Open in IMG/M
3300006755\|Ga0079222_11079247	Not Available	702	Open in IMG/M
3300006755\|Ga0079222_11269005	Not Available	667	Open in IMG/M
3300006806\|Ga0079220_10411818	Not Available	888	Open in IMG/M
3300006806\|Ga0079220_11057869	Not Available	652	Open in IMG/M
3300006854\|Ga0075425_100901754	Not Available	1011	Open in IMG/M
3300006854\|Ga0075425_100919826	Not Available	1000	Open in IMG/M
3300006954\|Ga0079219_10651891	Not Available	786	Open in IMG/M
3300007788\|Ga0099795_10574623	Not Available	534	Open in IMG/M
3300009162\|Ga0075423_11106609	Not Available	844	Open in IMG/M
3300009792\|Ga0126374_10437306	Not Available	925	Open in IMG/M
3300010043\|Ga0126380_10019404	All Organisms → cellular organisms → Bacteria	3234	Open in IMG/M
3300010043\|Ga0126380_10221567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1285	Open in IMG/M
3300010043\|Ga0126380_10522475	Not Available	916	Open in IMG/M
3300010043\|Ga0126380_10996464	Not Available	705	Open in IMG/M
3300010046\|Ga0126384_10011924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5442	Open in IMG/M
3300010046\|Ga0126384_10535722	Not Available	1015	Open in IMG/M
3300010046\|Ga0126384_11922233	Not Available	564	Open in IMG/M
3300010047\|Ga0126382_10420904	Not Available	1049	Open in IMG/M
3300010047\|Ga0126382_10623399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300010048\|Ga0126373_12953407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	530	Open in IMG/M
3300010152\|Ga0126318_11007268	Not Available	796	Open in IMG/M
3300010359\|Ga0126376_10498157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1127	Open in IMG/M
3300010361\|Ga0126378_10304076	Not Available	1698	Open in IMG/M
3300010361\|Ga0126378_11047760	Not Available	918	Open in IMG/M
3300010362\|Ga0126377_10331303	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300010362\|Ga0126377_11727193	Not Available	701	Open in IMG/M
3300010366\|Ga0126379_13218591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300010376\|Ga0126381_100860138	Not Available	1304	Open in IMG/M
3300010376\|Ga0126381_101280251	Not Available	1060	Open in IMG/M
3300010376\|Ga0126381_105124524	Not Available	502	Open in IMG/M
3300010398\|Ga0126383_10244691	Not Available	1755	Open in IMG/M
3300010398\|Ga0126383_11028900	Not Available	912	Open in IMG/M
3300011120\|Ga0150983_10774594	Not Available	516	Open in IMG/M
3300011120\|Ga0150983_14469136	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300012198\|Ga0137364_11180608	Not Available	574	Open in IMG/M
3300012202\|Ga0137363_11141784	Not Available	663	Open in IMG/M
3300012205\|Ga0137362_10816549	Not Available	799	Open in IMG/M
3300012208\|Ga0137376_10725386	Not Available	857	Open in IMG/M
3300012285\|Ga0137370_10369251	Not Available	866	Open in IMG/M
3300012469\|Ga0150984_122100769	Not Available	943	Open in IMG/M
3300012582\|Ga0137358_11006935	Not Available	539	Open in IMG/M
3300012917\|Ga0137395_10921916	Not Available	630	Open in IMG/M
3300012922\|Ga0137394_11441727	Not Available	548	Open in IMG/M
3300012948\|Ga0126375_10861850	Not Available	724	Open in IMG/M
3300015371\|Ga0132258_11131680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1979	Open in IMG/M
3300015372\|Ga0132256_100337930	Not Available	1598	Open in IMG/M
3300015372\|Ga0132256_102471728	Not Available	621	Open in IMG/M
3300018431\|Ga0066655_10570130	Not Available	759	Open in IMG/M
3300018468\|Ga0066662_12524440	Not Available	542	Open in IMG/M
3300020579\|Ga0210407_10033694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3810	Open in IMG/M
3300020579\|Ga0210407_10872283	Not Available	691	Open in IMG/M
3300020580\|Ga0210403_10028514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4456	Open in IMG/M
3300020580\|Ga0210403_10807231	Not Available	745	Open in IMG/M
3300020580\|Ga0210403_11508394	Not Available	505	Open in IMG/M
3300020581\|Ga0210399_10455969	Not Available	1065	Open in IMG/M
3300020581\|Ga0210399_10703707	Not Available	830	Open in IMG/M
3300020581\|Ga0210399_11387880	Not Available	549	Open in IMG/M
3300020581\|Ga0210399_11534202	Not Available	516	Open in IMG/M
3300020582\|Ga0210395_10550004	Not Available	868	Open in IMG/M
3300021088\|Ga0210404_10040071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2152	Open in IMG/M
3300021088\|Ga0210404_10861470	Not Available	518	Open in IMG/M
3300021168\|Ga0210406_10514119	Not Available	945	Open in IMG/M
3300021168\|Ga0210406_10678427	Not Available	796	Open in IMG/M
3300021170\|Ga0210400_11331485	Not Available	574	Open in IMG/M
3300021171\|Ga0210405_11213237	Not Available	558	Open in IMG/M
3300021178\|Ga0210408_10481714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	987	Open in IMG/M
3300021178\|Ga0210408_10716174	Not Available	788	Open in IMG/M
3300021180\|Ga0210396_10844710	Not Available	783	Open in IMG/M
3300021180\|Ga0210396_11207445	Not Available	633	Open in IMG/M
3300021181\|Ga0210388_10608254	Not Available	956	Open in IMG/M
3300021401\|Ga0210393_11202360	Not Available	610	Open in IMG/M
3300021401\|Ga0210393_11205969	Not Available	609	Open in IMG/M
3300021403\|Ga0210397_10438723	Not Available	981	Open in IMG/M
3300021404\|Ga0210389_11443796	Not Available	524	Open in IMG/M
3300021405\|Ga0210387_10402250	Not Available	1213	Open in IMG/M
3300021406\|Ga0210386_11548798	Not Available	551	Open in IMG/M
3300021407\|Ga0210383_10159686	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300021432\|Ga0210384_10108312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2491	Open in IMG/M
3300021432\|Ga0210384_10312937	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300021432\|Ga0210384_11858246	Not Available	508	Open in IMG/M
3300021478\|Ga0210402_10664871	Not Available	964	Open in IMG/M
3300021478\|Ga0210402_11200298	Not Available	686	Open in IMG/M
3300021479\|Ga0210410_11003431	Not Available	724	Open in IMG/M
3300021479\|Ga0210410_11050384	Not Available	704	Open in IMG/M
3300021560\|Ga0126371_10206307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2063	Open in IMG/M
3300021560\|Ga0126371_11442709	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300022506\|Ga0242648_1032268	Not Available	731	Open in IMG/M
3300022533\|Ga0242662_10001836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3239	Open in IMG/M
3300022714\|Ga0242671_1037281	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300022720\|Ga0242672_1042700	Not Available	736	Open in IMG/M
3300025910\|Ga0207684_10428206	Not Available	1137	Open in IMG/M
3300026508\|Ga0257161_1058365	Not Available	784	Open in IMG/M
3300026527\|Ga0209059_1231998	Not Available	619	Open in IMG/M
3300026527\|Ga0209059_1287447	Not Available	555	Open in IMG/M
3300026557\|Ga0179587_10801540	Not Available	621	Open in IMG/M
3300027109\|Ga0208603_1061061	Not Available	566	Open in IMG/M
3300027174\|Ga0207948_1026080	Not Available	695	Open in IMG/M
3300027537\|Ga0209419_1045302	Not Available	850	Open in IMG/M
3300027635\|Ga0209625_1013381	All Organisms → cellular organisms → Bacteria	1796	Open in IMG/M
3300027903\|Ga0209488_10919601	Not Available	612	Open in IMG/M
3300029636\|Ga0222749_10308607	Not Available	820	Open in IMG/M
3300031057\|Ga0170834_100803000	Not Available	816	Open in IMG/M
3300031057\|Ga0170834_104413049	Not Available	1244	Open in IMG/M
3300031231\|Ga0170824_109668551	Not Available	1876	Open in IMG/M
3300031446\|Ga0170820_10746364	Not Available	669	Open in IMG/M
3300031754\|Ga0307475_10754906	Not Available	774	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.65%
Host-Associated	Host-Associated	6.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.86%
Plants	Host-Associated → Plants	6.35%
Aquatic	Environmental → Aquatic	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.59%
Freshwater	Environmental → Aquatic → Freshwater	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.19%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.38%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.59%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.38%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.59%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104482752	3300001867	Forest Soil	MAGAEQPEPELYREIAEKLREMADQSHLPEIQEDLRALAARFEEMAAHCEAQRRQGAARRRGKA*
JGI25617J43924_101427932	3300002914	Grasslands Soil	MNDAEQPSPELYRQVAQKLRELADQSHLPDIRGDLLDLSARFERMAAHYEAQRRLGAARDMGKS*
JGIcombinedJ51221_100722241	3300003505	Forest Soil	MNNAEQPSPEEYRQLAEKLRELADQSHLPDIQGDLRVLAARFERMATYYEAQRRLRAGGGAENG*
JGIcombinedJ51221_101134032	3300003505	Forest Soil	MNNADQPSPELYRQAAEKLRELARQCHLPDIQGDLRVLAARFERMAAYYEAQRRQGGARDTEKE*
JGIcombinedJ51221_101906132	3300003505	Forest Soil	MDDAEQPSPELYRQAAQKLRELADQSRLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE*
Ga0063454_1003572351	3300004081	Soil	MNNAEQPSPELYRAAEKLRELADQSHLPDVQADLRELAARFERMAACYDAQRRRGAARG*
Ga0058900_13163831	3300004099	Forest Soil	MEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE*
Ga0066677_101117902	3300005171	Soil	MNNAEKPSPELYRQAAEKLREVADQTHLPDVRRDLRELAARFERMAIYYEAQTRLRAAGESDQE*
Ga0066680_102699652	3300005174	Soil	MVNKFNRRVPAMDDAEQPSPELYRQAAEKLRELADQSHLPDIQGDLRVLAARFERMAIYYEAQRRLRPARDKDKN*
Ga0066671_102940383	3300005184	Soil	MNHSEQPAAELYREVAEKLRELAGQSHLPDVQGDLRELAARFERMAVYYEAQGRLGEARDTAKD*
Ga0070709_100496086	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLLDLSARFERMAAYLEAQRRLGPARDNKDR*
Ga0070711_1000810952	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MDDAEQPSPELYRRAAEKLRELADQTDLPDIRGDLLDLSARFERMAAYLDAQRRLNPIREKKD*
Ga0066670_106112471	3300005560	Soil	MNNADQPSPELYREAAQKLRELADQSHLPDIRGDLLDLAARFERMAAHYEAQRRLRAARN
Ga0066705_108243721	3300005569	Soil	MNHSEQPGAELYREAAEKLRELAGQSHLPDVQGDLRELAARFERMAVYYEAQGRLGEARDTAKD*
Ga0066903_1077759562	3300005764	Tropical Forest Soil	MSNAEQLTPELYRELAGKLRELARQSHLPDIQRDLCVLAERFERMAACQEAQRRQRPARDSAKE*
Ga0070766_106639971	3300005921	Soil	MEDAEQPSPELYCQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAAPDTNNE*
Ga0081540_11546693	3300005983	Tabebuia Heterophylla Rhizosphere	YRELAEKLRELARQSHLPDIQRDLQVLAERFERMADGHEAQRRQRVARDRAKE*
Ga0070712_1019403162	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNDAEQPSPELYRLAQKLRELADQSHLPDIQGDLRQLAARFDRMAAYLEAQRRLGAARGTDKD*
Ga0070765_1004573623	3300006176	Soil	MDDAEQPSPELYRLAQKLRELADQSHLPDIQGDLRQLAARFDRMAAYLKAQRRLGAARGTDKD*
Ga0070765_1010884251	3300006176	Soil	PSPEPYRQVAQKLRELADQSRLPDIRGDLLDLSARFERMATYLEAQHRLSLARQKGKG*
Ga0079222_110792472	3300006755	Agricultural Soil	MNDAEQPSPELYRQAAEKLRELARQSPLPDIRGDLLELAARSERMAAYYEAQRRLREPRDTDKD*
Ga0079222_112690051	3300006755	Agricultural Soil	KTDRRVPPMTSAERPSPERYRQAAEKLRELADQSHLPDIRADILDLAARFERMATYLEAQRRLGATRENNGG*
Ga0079220_104118182	3300006806	Agricultural Soil	MNHAEQPKPELYRKAAEKLRELARQSYLPDIQGDLRDLAARFERMAAYYEAQRRLGSARDNKAG*
Ga0079220_110578691	3300006806	Agricultural Soil	MLCQRELSLGGKMNHSEQPAAELYREVAEKLRELAGQSHLPDIQGDLQELAARFERMAAYYEAQGRLGEARDTDDD*
Ga0075425_1009017541	3300006854	Populus Rhizosphere	MNDAPQPTPELYREAAAKLRVLADQSPLPNIQGDLLDLAARFERMAAYFEAQRRTAADRDTRKI*
Ga0075425_1009198262	3300006854	Populus Rhizosphere	MTNAEQLTPELYRELAEKLRELARQSHLPDIRRDLRVLAERFERMAACHEAQRGQRATRDRAKE*
Ga0079219_106518913	3300006954	Agricultural Soil	MNDAPQPTPELYREAAAKLRVLADQSPLPNIQGDLLDLAARFERMAAYFEAQRRTAADQDTRKI*
Ga0099795_105746231	3300007788	Vadose Zone Soil	MNNAEQPSPELYRAAEKLRELADQSHLPDVQEDLRELAARFERMAAYYDAQGRQGAARR*
Ga0075423_111066091	3300009162	Populus Rhizosphere	MNDAPQPTPELYREAAAKLRVLADQSPLPNIQGDLLDLAARFERMAAYFEAQRRTASDRNTRPI*
Ga0126374_104373062	3300009792	Tropical Forest Soil	MNNAELPSPEAYRRLAEKLRELADQSRRPEIRADLLDLSARFERMAAYFEAQHRHRSARDIGKD*
Ga0126380_100194044	3300010043	Tropical Forest Soil	MNNAELPSPEAYRQLAEKLRELADQSRRPEIRADLLDLSARFERMAAYFEAQHRHRSARDIGKD*
Ga0126380_102215673	3300010043	Tropical Forest Soil	MSDADQPTPELYRQAAEKLRELASQSHLPDIRGDLLDLAARFERMAAYLEAQRRPGQLRDPAKD*
Ga0126380_105224753	3300010043	Tropical Forest Soil	LTINRRVPAMSNAEQLTPELYRELAENLRELARQSHLPNIQRDLRGLAERFERMAASQEAQRRQRPARDSAKE*
Ga0126380_109964642	3300010043	Tropical Forest Soil	MPNAEQLTPELYRELAERLRELARQSHLGDIRRDLWGLAERFERVAACQEAQRRQRPAQDSAKE*
Ga0126384_1001192410	3300010046	Tropical Forest Soil	MNNAELPSPEAYRRLAEKLRELADQSRRPEIRADLLDLSARFERMAAYFEAQRRHRSARDIGKD*
Ga0126384_105357221	3300010046	Tropical Forest Soil	MSDAEQPTPELYREAAERVRNLAQQAPLPDIRADLLEVAARFERMAAYFEARRSSPARDR
Ga0126384_119222332	3300010046	Tropical Forest Soil	MNNAEWPAMNNAEQFSPEAYRELAAKLRELADQLHLPEIRGDLLDLSARFERMAAYFEAQRRPRSRSSGTR*
Ga0126382_104209043	3300010047	Tropical Forest Soil	MPNAEQLTPELYRELAEKLRELARQSHLPDIRRDLRVLAERFERMAASHEAQRRQRAARDKDKA*
Ga0126382_106233991	3300010047	Tropical Forest Soil	MNNAEQFSPEAYRELAAKLRELADQSHPEIRGDLLDLSARFERMAAYFEAQRRPRSRSSGTR*
Ga0126373_129534071	3300010048	Tropical Forest Soil	MTNAEQPTPELYRELAEKLKELARQSHLADIRRDLRVLAERFERMADCHEAQRRQRPARDSAKE*
Ga0126318_110072682	3300010152	Soil	SGAAMNDADQPKPEEYRRAAEKLRELADQSYLPDVQGDLRDLAARFERMAAYFEAQHRLSAARVTDKD*
Ga0126376_104981573	3300010359	Tropical Forest Soil	MSDADQPTPELYRQAAEKLRELASQSHLPDIRGDLLDLAARFERMAAYLEAQRRPG
Ga0126378_103040763	3300010361	Tropical Forest Soil	MSGAERPNPELYRGAAAKLRELAGQCYWPTIEGDLLELAARFERMAAYFEAQVRLR*
Ga0126378_110477601	3300010361	Tropical Forest Soil	MTNAEQPTPELYRELAEKLKELARQSHLADIRRDLRVLAERFERMADCHEAQRRQRPARDSAKG*
Ga0126377_103313033	3300010362	Tropical Forest Soil	GVEWLTSYSRVARMNNAELPSPEAYRRLAEKLRELADQSRRPEIRADLLDLSARFERMAAYFEAQRRHRSARDIGKD*
Ga0126377_117271931	3300010362	Tropical Forest Soil	MTNAEQLTPELYRELAEKLRELARQSHLADIRRDLRVLAERFERMADCHEAQRRQRPARDSAKE*
Ga0126379_132185912	3300010366	Tropical Forest Soil	MSNAGPLTPELYRELAEKLRELARQSHLPDIQRDLRALAERFERMAASHEAQRSQRPARDSAKE*
Ga0126381_1008601381	3300010376	Tropical Forest Soil	YSRVARMNNAELPSPEAYRRLAEKLRELADQSRRPEIRADLLDLSARFERMAAYFEAQRRHRSARDIGKD*
Ga0126381_1012802512	3300010376	Tropical Forest Soil	MNNAEWPAMNNAEQFSPKAYRELAAKLRELADQSHPEIRGDLLDLSARFERMAAYFEAQRRPRSRSSGTR*
Ga0126381_1051245241	3300010376	Tropical Forest Soil	MPNAEQLTPELYRELAEKLRDLARQSRLPDIQRDLRVLAERFDRMAACHEAQR*
Ga0126383_102446912	3300010398	Tropical Forest Soil	MNNAEQFSPEAYRELAAKLRELADQLHLPEIRGDLLDLSARFERMAAYFEAQRRPRSRSSGTR*
Ga0126383_110289003	3300010398	Tropical Forest Soil	MSNAEQLTPELYRELAEKLRELARQSHLPDIQRDLWVLAERFERMAARQEAQRRQRPARDSANE*
Ga0150983_107745941	3300011120	Forest Soil	DAEQPSPEVYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHGAARDTDNE*
Ga0150983_144691364	3300011120	Forest Soil	PGAAMNNAEQPSPELYRQAAEKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE*
Ga0137364_111806081	3300012198	Vadose Zone Soil	MKDAEQPTPELYREAAERLRQFAGQALLPDIKGDLLDLSARFERMAVYYEAQHRLGAVRDVGKD*
Ga0137363_111417842	3300012202	Vadose Zone Soil	MDDAEQPSPELYRQAAEKLRELADQSHLPDIQGDLRVLAARFERMAIYYEAQRRLRPARDKDKN*
Ga0137362_108165491	3300012205	Vadose Zone Soil	MNNPKQPTPELYREAAEKLRELADQSHLPDIRGDLLELSARFERMAAYFEAQRRPRSLSR
Ga0137376_107253861	3300012208	Vadose Zone Soil	AAEKLRQFAGQTLLPDIKGDLLDLSARFERMAVYYEAQHRLGAVREAGKD*
Ga0137370_103692511	3300012285	Vadose Zone Soil	MDNTEEPKPELYRQAAEKLRELARQSYLPDIQGDLRDLAARFERMAAYYEAQRRLGSARDKKLG*
Ga0150984_1221007691	3300012469	Avena Fatua Rhizosphere	AMKNAEQPSPELYRAAEKLRELADQSHLPDVQDDLRELAARFERMAACYDAQGKRGAARG
Ga0137358_110069352	3300012582	Vadose Zone Soil	MEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE*
Ga0137395_109219161	3300012917	Vadose Zone Soil	MNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE*
Ga0137394_114417272	3300012922	Vadose Zone Soil	MSNVEQPTPELYREAAEKLRQLAGQSPLPDVQADLLDLAARFERMAAYFEAQRRLGAAAMQAKNR
Ga0126375_108618503	3300012948	Tropical Forest Soil	MSNAEQLTPELYRELAERLRELARQSHLGDIRRDLWGLAERFERVAACQEAQRRQRPARDSTKE*
Ga0132258_111316801	3300015371	Arabidopsis Rhizosphere	MNHAEQPKPELYREVAEKLRELARQSYLPDIQGDLRDLAARFERMAAYYEAQRRLGSARDNKAG*
Ga0132256_1003379303	3300015372	Arabidopsis Rhizosphere	MNHAEQPKPELYREAAEKLRELARQSYLPDIQGDLRDLAARFERMAAYYEAQRRLGSARDNKAG*
Ga0132256_1024717281	3300015372	Arabidopsis Rhizosphere	MNDAEQPSPELYRQAAEKLRELALQSPLPDIQGDLLELAARSERMAAYYEAQRRLREPRDTDKD*
Ga0066655_105701301	3300018431	Grasslands Soil	MSDADQPTPELYREAAQKLRELADQSHLPDIRGDLLDLAARFERMAAHYEAQRRLGGARD
Ga0066662_125244402	3300018468	Grasslands Soil	WLGGRMSDAQQPTPELYREAAAKLRELADQSHLPDIRGDLLDLSTRFERMAAYFEAQRRHSAARNVG
Ga0210407_100336946	3300020579	Soil	MNDAEQPSPELYRLAQKLRELADQSHLPDIQGDLRQLAARFDRMAAYLEAQRRLGAARGTDKD
Ga0210407_108722831	3300020579	Soil	MDDAEQPSPELYRRASEKLRELADQTDLPDIRGDLLDLAARFERMAADLEAQRRRNPGSGEEGLV
Ga0210403_100285147	3300020580	Soil	MVNTLTSGAAMNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLLDLSARFERMAAHFEAQRRLGAARDTGKS
Ga0210403_108072311	3300020580	Soil	MEDAEQPSPELYCQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAAPDTNNE
Ga0210403_115083941	3300020580	Soil	MDDAEQPSPELYRQAAQKLRELADQSRLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE
Ga0210399_104559691	3300020581	Soil	VSCRVAAMSDAEQPSPELYRLTKKLRELADQSHLPDIQGDLRQLAARFERMAVHFDARRRLRPAREKNE
Ga0210399_107037072	3300020581	Soil	MDDAEQPSPEVYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYYEAQCRHGAAQDRDND
Ga0210399_113878802	3300020581	Soil	MRNAEQPTPDVYRELAEKLRELADQSDLPDIRGDLLDLAERFERMAAYLEEQRRLS
Ga0210399_115342021	3300020581	Soil	MSDAEQPTPELYRGLAEKLRELADQADLPDIRGDLLDLAARFERMAAYYETQRSQGAAR
Ga0210395_105500042	3300020582	Soil	MNNAEQPSPEEYRQLAEKLRELADQSHLPDIQGDLRVLAARFERMAAYYEAQRRQGGARDTEKE
Ga0210404_100400713	3300021088	Soil	MNNADQPSPELYRQAAEKLRELARQCHLPDIQGDLRVLAARFERMAAYYEAQRRQGGARDTEKE
Ga0210404_108614701	3300021088	Soil	AEQPTPELYRGLAEKLRELADQADLPDIRGDLLDLAARFERMAAYYETQRRQGAARK
Ga0210406_105141192	3300021168	Soil	MSDAEQPSPELYRLTKKLRELADQSHLPDIQGDLRQLAARFERMAVHFDVQRRLRPAREKNE
Ga0210406_106784272	3300021168	Soil	MRNAEQPTPDVYRELAEKLRELADQSDLPDIRGDLLDLAERFERMAAYLEAQ
Ga0210400_113314852	3300021170	Soil	MSDAEQPSPELYRLTKKLRELADQSHLPDIQGDLRQLAARFERMAVHFDAQRRLRP
Ga0210405_112132371	3300021171	Soil	MNNGEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYYEAQCRHGAARDTNNE
Ga0210408_104817143	3300021178	Soil	MNNAEQPSPEEYRQLAEKLRELADQSHLPDIQGDLRVLAARFERMAMYYEAQRRPRAAGGTEKG
Ga0210408_107161741	3300021178	Soil	MSDAEQPSPELYRLTKKLRELADQSHLPDIQGDLRQLAARFERMAVQFDAQRQLRPAREKNE
Ga0210396_108447101	3300021180	Soil	GAAMDDAEQPSPELYRRASEKLRELADQTDLPDIRGDLLDLAARFERMAADLEAQRRRNPGSGEEGLV
Ga0210396_112074452	3300021180	Soil	MNDAEQPSPEEYRQLAEKLRELADQSHLPDIQGDLRVLAARFERMAMYYEAQGRLRAAGGTEKG
Ga0210388_106082542	3300021181	Soil	MNDAEQPSPELYRLAQKLRELADQSHLPDIQGDLRQLAARFERMAVHFDARRRLRPAREKNE
Ga0210393_112023602	3300021401	Soil	TTCRVPAMRNAEQPTPDVYRELAEKLRELADQSDLPDIRGDLLDLAERFERMAAYLEEQRRLSPGREKKD
Ga0210393_112059692	3300021401	Soil	MEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAAPDTNNE
Ga0210397_104387231	3300021403	Soil	MSDAEQPTPELYRGLAEKLRELADQADLPDIRGDLLDLAARFERMAAYYETQRRQGAARK
Ga0210389_114437961	3300021404	Soil	MNDAEQPSPDVYRELAEKLRELADQSDLPDIRGDLLDLAARFERMAAYLEAQRRLSPGREKKD
Ga0210387_104022502	3300021405	Soil	MRNAEQPTPDVYRELAEKLRELADQSDLPDIRGDLLDLAERFERMAAYLEEQRRLSPGREKKD
Ga0210386_115487982	3300021406	Soil	MDDAEQPSPEVYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYYEAQCRHGAARDTNNE
Ga0210383_101596863	3300021407	Soil	MEDAEQPSPELYCQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE
Ga0210384_101083121	3300021432	Soil	MEDAEQPSPELYCQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCR
Ga0210384_103129372	3300021432	Soil	MHDAQQPTPELYREAAEKLRQLAGQSPLPDIRGDLLDLAARFERMAVYFEAQRRRGSARDINED
Ga0210384_118582461	3300021432	Soil	MTNAGQPSPELYRQAAEKLRELADQSHVPDIQEDLRELSARFERMAAYLEAQRRLGGARDINED
Ga0210402_106648712	3300021478	Soil	MSNAEQLTPELYRELAEKLRELADQSPLPDIQGDLRALAARFERMAACYEAQRRPGAGRNADKE
Ga0210402_112002982	3300021478	Soil	MSDAELPSPEPYRQVAQKLRELADQSRLPDIRGDLLDLSARFERMATYLEAQHRLSLARQKGKG
Ga0210410_110034312	3300021479	Soil	MTNAGQPSPELYRQAAEKLRELADQSHVPDIQEDLRELSARFERMAAYLEAQRRLGGARD
Ga0210410_110503841	3300021479	Soil	MHDAQQPTPELYREAAEKLRQLAGQSPLPDIRGDLLDLAARFERMAVYFEAQRRRGSAHDINED
Ga0126371_102063071	3300021560	Tropical Forest Soil	MSDAEQPTPELYREAAERVRNLAQQARLPDIRADLLEVAARFERMAAYFEARRSSPAGDR
Ga0126371_114427092	3300021560	Tropical Forest Soil	MTNAEQPTPELYRELAEKLKELARQSHLADIRRDLRVLAERFERMADCHEAQRRQRPARDSAKE
Ga0242648_10322681	3300022506	Soil	QLLCARFPNKHDPGAAMEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE
Ga0242662_100018364	3300022533	Soil	PLWTTLSNLHPSYIQAAQKLRELADQSRLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE
Ga0242671_10372811	3300022714	Soil	VVWLTIYRRVPAMNNGEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE
Ga0242672_10427002	3300022720	Soil	MEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE
Ga0207684_104282061	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSDAEQPTPELYREAAERVRNLAQQAHLADIRADLLDLAARFERMAAYLEARYRSRPS
Ga0257161_10583653	3300026508	Soil	VPAMNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQRRHGAARDTNNE
Ga0209059_12319982	3300026527	Soil	MNNAEKPSPELYRQAAEKLREVADQTHLPDVRRDLRELAARFERMAIYYEAQTRLRAAGESDQE
Ga0209059_12874471	3300026527	Soil	MNHSEQPAAELYREVAEKLRELAGQSHLPDVQGDLRELAARFERMAVYYEAQGRLGEARDTAKD
Ga0179587_108015402	3300026557	Vadose Zone Soil	MSDADQPLPELYRQAAQKLRELADESHLPDIRGDLLALSARFERMAAYYEAQRRLGAARDKRK
Ga0208603_10610612	3300027109	Forest Soil	GAAMEDAEQPSPELYCQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAAPDTNNE
Ga0207948_10260801	3300027174	Forest Soil	MNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYYEAQCRHGAARDTNNE
Ga0209419_10453022	3300027537	Forest Soil	MNNAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAARDTNNE
Ga0209625_10133813	3300027635	Forest Soil	MEDAEQPSPELYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHGAARDTNNE
Ga0209488_109196012	3300027903	Vadose Zone Soil	MVNRMIRRVPAMDDAEQPSPELYRQAAEKLRELADQSHLPDIQGDLRVLAARFERMAIYYEAQRRLRPARDKDKN
Ga0222749_103086072	3300029636	Soil	MDDAEQPSPEVYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHRAAPDTNNE
Ga0170834_1008030001	3300031057	Forest Soil	RRVPAMSDAEQPSPELYCQAAQKLRELADESHLLDIRGDLLDLSARFERMATYLEAQQRLRLARQKGKG
Ga0170834_1044130492	3300031057	Forest Soil	MNNLEQPLPELYRQAAEKLRELVDQSHLPDIQGDLRALAARFERMAAYYEAQRRQSAARK
Ga0170824_1096685512	3300031231	Forest Soil	MNNAEQPLPELYRQAAEKLRELVDQSHLPDIQGDLRALAARFERMAAYYEAQRRQSAARK
Ga0170820_107463641	3300031446	Forest Soil	AMNNAEQPSPEEYRQLAEKLRELADQSHLPDIQGDLRVLAARFERMAMYYEAQRRLRAAGGAQNR
Ga0307475_107549061	3300031754	Hardwood Forest Soil	MDDAEQPSPEVYRQAAQKLRELADQSHLPDIRGDLRALAARFERMAAYFEAQCRHGAARDTDNE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066964

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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