Metagenome / Metatranscriptome Family F067003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067003
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	73 residues
Representative Sequence	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Number of Associated Samples	89
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.80 %
% of genes near scaffold ends (potentially truncated)	53.17 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.048 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.095 % of family members)
Environment Ontology (ENVO)	Unclassified (56.349 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 1.32% Coil/Unstructured: 51.32%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00589	Phage_integrase	4.76
PF09250	Prim-Pol	3.17
PF13481	AAA_25	1.59
PF12307	DUF3631	0.79
PF04392	ABC_sub_bind	0.79
PF02899	Phage_int_SAM_1	0.79
PF08774	VRR_NUC	0.79
PF08808	RES	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.79
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.79
COG5654	Predicted toxin component of a toxin-antitoxin system, contains RES domain	Defense mechanisms [V]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
All Organisms	root	All Organisms	30.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
cellular organisms	root	All Organisms → cellular organisms	30.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.40 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.05 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	2.38 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.70 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.79 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.52 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.38 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.79 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.35 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.38 %
Brevundimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.17 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2.38 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.38 %
unclassified Brevundimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → unclassified Brevundimonas	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.05 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3.17 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2.38 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2.38 %
Brevundimonas sp. KM4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → unclassified Brevundimonas → Brevundimonas sp. KM4	0.79 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.79 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0677263	Not Available	533	Open in IMG/M
3300000550\|F24TB_12684361	Not Available	809	Open in IMG/M
3300000550\|F24TB_13232364	Not Available	719	Open in IMG/M
3300000956\|JGI10216J12902_119295088	Not Available	1372	Open in IMG/M
3300004633\|Ga0066395_10387017	Not Available	785	Open in IMG/M
3300005332\|Ga0066388_100074203	All Organisms → cellular organisms → Bacteria → Proteobacteria	3728	Open in IMG/M
3300005332\|Ga0066388_100493660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1861	Open in IMG/M
3300005332\|Ga0066388_102118519	Not Available	1012	Open in IMG/M
3300005332\|Ga0066388_103308986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	823	Open in IMG/M
3300005363\|Ga0008090_15879965	Not Available	682	Open in IMG/M
3300005436\|Ga0070713_100632744	Not Available	1018	Open in IMG/M
3300005437\|Ga0070710_11027444	Not Available	602	Open in IMG/M
3300005439\|Ga0070711_101288404	Not Available	634	Open in IMG/M
3300005471\|Ga0070698_101022990	Not Available	774	Open in IMG/M
3300005536\|Ga0070697_100257442	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300005713\|Ga0066905_100302523	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300005713\|Ga0066905_100860554	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300005713\|Ga0066905_101300455	Not Available	654	Open in IMG/M
3300005764\|Ga0066903_100606369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1899	Open in IMG/M
3300005764\|Ga0066903_100989854	Not Available	1535	Open in IMG/M
3300005764\|Ga0066903_101575409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1244	Open in IMG/M
3300005764\|Ga0066903_102999999	Not Available	914	Open in IMG/M
3300005764\|Ga0066903_103054033	Not Available	906	Open in IMG/M
3300005764\|Ga0066903_105873434	Not Available	644	Open in IMG/M
3300005764\|Ga0066903_105883374	Not Available	643	Open in IMG/M
3300005764\|Ga0066903_106775823	Not Available	595	Open in IMG/M
3300005764\|Ga0066903_107675681	Not Available	555	Open in IMG/M
3300006028\|Ga0070717_10267881	Not Available	1512	Open in IMG/M
3300006175\|Ga0070712_100013216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5268	Open in IMG/M
3300009162\|Ga0075423_11819783	Not Available	657	Open in IMG/M
3300009792\|Ga0126374_10598305	Not Available	813	Open in IMG/M
3300010046\|Ga0126384_11168920	Not Available	708	Open in IMG/M
3300010047\|Ga0126382_10644897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Brevundimonas → unclassified Brevundimonas → Brevundimonas sp. KM4	879	Open in IMG/M
3300010048\|Ga0126373_10970762	Not Available	915	Open in IMG/M
3300010358\|Ga0126370_12477227	Not Available	517	Open in IMG/M
3300010359\|Ga0126376_12364580	Not Available	578	Open in IMG/M
3300010361\|Ga0126378_10592404	Not Available	1223	Open in IMG/M
3300010362\|Ga0126377_10454099	Not Available	1304	Open in IMG/M
3300010376\|Ga0126381_100908783	Not Available	1267	Open in IMG/M
3300010376\|Ga0126381_105049753	Not Available	506	Open in IMG/M
3300010398\|Ga0126383_10340499	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300012201\|Ga0137365_10052483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3084	Open in IMG/M
3300012202\|Ga0137363_11478959	Not Available	570	Open in IMG/M
3300012210\|Ga0137378_10948919	Not Available	774	Open in IMG/M
3300012211\|Ga0137377_10651524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	989	Open in IMG/M
3300012362\|Ga0137361_11480711	Not Available	601	Open in IMG/M
3300012971\|Ga0126369_10903395	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	969	Open in IMG/M
3300012971\|Ga0126369_11217761	Not Available	843	Open in IMG/M
3300016270\|Ga0182036_10034239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3057	Open in IMG/M
3300016270\|Ga0182036_10194914	Not Available	1481	Open in IMG/M
3300016319\|Ga0182033_10172673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1693	Open in IMG/M
3300016319\|Ga0182033_10490152	Not Available	1054	Open in IMG/M
3300016319\|Ga0182033_11035357	Not Available	731	Open in IMG/M
3300016341\|Ga0182035_10040328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3097	Open in IMG/M
3300016341\|Ga0182035_10659074	Not Available	909	Open in IMG/M
3300016357\|Ga0182032_10062283	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300016357\|Ga0182032_11169083	Not Available	661	Open in IMG/M
3300016371\|Ga0182034_10398548	Not Available	1129	Open in IMG/M
3300016404\|Ga0182037_10913625	Not Available	762	Open in IMG/M
3300021478\|Ga0210402_11785431	Not Available	541	Open in IMG/M
3300021560\|Ga0126371_10549661	Not Available	1304	Open in IMG/M
3300021560\|Ga0126371_11667266	Not Available	762	Open in IMG/M
3300025915\|Ga0207693_10014729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6282	Open in IMG/M
3300025939\|Ga0207665_11444515	Not Available	547	Open in IMG/M
3300026551\|Ga0209648_10478671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300027903\|Ga0209488_10996601	Not Available	580	Open in IMG/M
3300031543\|Ga0318516_10101635	Not Available	1625	Open in IMG/M
3300031543\|Ga0318516_10569950	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	647	Open in IMG/M
3300031545\|Ga0318541_10112831	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300031545\|Ga0318541_10197779	Not Available	1112	Open in IMG/M
3300031545\|Ga0318541_10230940	Not Available	1027	Open in IMG/M
3300031545\|Ga0318541_10655984	Not Available	586	Open in IMG/M
3300031545\|Ga0318541_10806905	Not Available	523	Open in IMG/M
3300031564\|Ga0318573_10324042	Not Available	826	Open in IMG/M
3300031564\|Ga0318573_10476185	Not Available	672	Open in IMG/M
3300031573\|Ga0310915_10316791	Not Available	1103	Open in IMG/M
3300031668\|Ga0318542_10750136	Not Available	511	Open in IMG/M
3300031679\|Ga0318561_10234918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	998	Open in IMG/M
3300031682\|Ga0318560_10441166	Not Available	705	Open in IMG/M
3300031713\|Ga0318496_10275314	Not Available	929	Open in IMG/M
3300031719\|Ga0306917_10881503	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031744\|Ga0306918_10084755	Not Available	2215	Open in IMG/M
3300031744\|Ga0306918_10159786	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300031744\|Ga0306918_11306000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	558	Open in IMG/M
3300031747\|Ga0318502_10118477	Not Available	1485	Open in IMG/M
3300031751\|Ga0318494_10599596	Not Available	644	Open in IMG/M
3300031764\|Ga0318535_10343422	Not Available	667	Open in IMG/M
3300031764\|Ga0318535_10424531	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300031768\|Ga0318509_10207167	Not Available	1091	Open in IMG/M
3300031770\|Ga0318521_10181835	Not Available	1207	Open in IMG/M
3300031771\|Ga0318546_10235971	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1256	Open in IMG/M
3300031778\|Ga0318498_10442226	Not Available	576	Open in IMG/M
3300031781\|Ga0318547_10101974	All Organisms → cellular organisms → Bacteria → Proteobacteria	1640	Open in IMG/M
3300031793\|Ga0318548_10145452	Not Available	1154	Open in IMG/M
3300031797\|Ga0318550_10612958	Not Available	523	Open in IMG/M
3300031798\|Ga0318523_10473552	Not Available	620	Open in IMG/M
3300031805\|Ga0318497_10162284	Not Available	1227	Open in IMG/M
3300031805\|Ga0318497_10645311	Not Available	594	Open in IMG/M
3300031819\|Ga0318568_10089049	Not Available	1836	Open in IMG/M
3300031831\|Ga0318564_10317300	Not Available	687	Open in IMG/M
3300031833\|Ga0310917_10027986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3307	Open in IMG/M
3300031879\|Ga0306919_11041700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	625	Open in IMG/M
3300031880\|Ga0318544_10345441	Not Available	578	Open in IMG/M
3300031890\|Ga0306925_10365442	Not Available	1549	Open in IMG/M
3300031894\|Ga0318522_10423088	Not Available	505	Open in IMG/M
3300031897\|Ga0318520_10154051	Not Available	1334	Open in IMG/M
3300031910\|Ga0306923_10458219	Not Available	1446	Open in IMG/M
3300031910\|Ga0306923_11460355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	717	Open in IMG/M
3300031945\|Ga0310913_10145674	Not Available	1634	Open in IMG/M
3300031946\|Ga0310910_10021298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4272	Open in IMG/M
3300031946\|Ga0310910_11048205	Not Available	636	Open in IMG/M
3300031954\|Ga0306926_10777811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1155	Open in IMG/M
3300031954\|Ga0306926_13028225	Not Available	501	Open in IMG/M
3300032001\|Ga0306922_12070379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	552	Open in IMG/M
3300032010\|Ga0318569_10534722	Not Available	546	Open in IMG/M
3300032041\|Ga0318549_10376001	Not Available	640	Open in IMG/M
3300032043\|Ga0318556_10589211	Not Available	580	Open in IMG/M
3300032044\|Ga0318558_10123746	Not Available	1228	Open in IMG/M
3300032055\|Ga0318575_10087290	Not Available	1495	Open in IMG/M
3300032059\|Ga0318533_10907875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300032076\|Ga0306924_10303542	Not Available	1832	Open in IMG/M
3300032076\|Ga0306924_11717136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	657	Open in IMG/M
3300032090\|Ga0318518_10072507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1680	Open in IMG/M
3300032094\|Ga0318540_10016406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3012	Open in IMG/M
3300033289\|Ga0310914_11872989	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.21%
Host-Associated	Host-Associated	0.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.21%
Plants	Host-Associated → Plants	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.98%
Loam	Environmental → Terrestrial → Soil → Loam	22.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.59%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.49%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06772631	3300000033	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALGYAKALVRSTEAV*
F24TB_126843612	3300000550	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAVEAAR*
F24TB_132323643	3300000550	Soil	MDDTAFPLMTRRQLVDFVQRQTGIPLTYSRLMKDGAAGRAPKPVAIFXKRHLYSEDDALGYAKTLVRSTEVAGAAR*
JGI10216J12902_1192950882	3300000956	Soil	MDDTAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKQYLYSEADALGYVKALLGSTEAVEAARFNRC*
Ga0066395_103870172	3300004633	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAAR*
Ga0066388_1000742036	3300005332	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAIEAAR*
Ga0066388_1004936602	3300005332	Tropical Forest Soil	MDNTPFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAVFGKRYLYSEADALGYAKALVRSTGAVEAPR*
Ga0066388_1021185192	3300005332	Tropical Forest Soil	MTRRQFVEFMQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALTYAKALVRSTEATEAAR*
Ga0066388_1033089861	3300005332	Tropical Forest Soil	VMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAVEAAR*
Ga0008090_158799652	3300005363	Tropical Rainforest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0070713_1006327442	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGATGRGPRPAAVFGRRYLYSEADALTYAKALVRSTEPIEAAR*
Ga0070710_110274441	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEPIEAAR*
Ga0070711_1012884041	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEPIEAAR*
Ga0070698_1010229902	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALSYAKALVRSTEAV*
Ga0070697_1002574422	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGRRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0066905_1003025232	3300005713	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAVEAPR*
Ga0066905_1008605542	3300005713	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEVARRSCWLERRQDAATA*
Ga0066905_1013004552	3300005713	Tropical Forest Soil	MEDTAFPLLTRRQLVELVRRQTGIPLTLSRLMKDGATGRAPRPAAVFGRRFLYSEAAALAYAKELIRPTEAVETAP*
Ga0066903_1006063693	3300005764	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVHRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEA
Ga0066903_1009898541	3300005764	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAVEA
Ga0066903_1015754091	3300005764	Tropical Forest Soil	LSFIASPSFGEVREPKARVMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALAYAKALVRSTEATEAAR*
Ga0066903_1029999991	3300005764	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVRRQTGIPVTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAVEA
Ga0066903_1030540331	3300005764	Tropical Forest Soil	MDETAFPLLTRRQLVELVRRQTGIPLTLSRLMKDGATGRAPRPTAVFGRRHLYTESAALAYAKELIRQTEAVETAP*
Ga0066903_1058734341	3300005764	Tropical Forest Soil	MNSTAFPLMTRRQVVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKQHLYSEADALGYAKALVRSSDTIRELLQGRSERPPVGDA*
Ga0066903_1058833743	3300005764	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKA
Ga0066903_1067758231	3300005764	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEA
Ga0066903_1076756812	3300005764	Tropical Forest Soil	VEFVQRQTGIPLTYSRLMKDGATGRAPRPTAVFGKRYLYSEADALGYAKALVRSTGAVEAPR*
Ga0070717_102678811	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAVFGKRYLYSEADALGYARALVRSTETVEPAR*
Ga0070712_1000132167	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RRQFVEFVKRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEPIEAAR*
Ga0075423_118197831	3300009162	Populus Rhizosphere	KLANLKGRPMDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALSYAKALVRSTEAV*
Ga0126374_105983051	3300009792	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAAR*
Ga0126384_111689202	3300010046	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRPRSLERHQDAATA*
Ga0126382_106448972	3300010047	Tropical Forest Soil	MDDTTFPLMTRHQFVEFVQRQTGIPLTYSRLMKDGALGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAVEAAR*
Ga0126373_109707621	3300010048	Tropical Forest Soil	RPMDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKGGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAAR*
Ga0126370_124772271	3300010358	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEATEAAR*
Ga0126376_123645802	3300010359	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAVEAAR*
Ga0126378_105924041	3300010361	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGALGRAPRPTAIVGKRYLYSEADALSYAKALVRSTETIEAAR*
Ga0126377_104540992	3300010362	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALTYAKALVRSTEATEAAR*
Ga0126381_1009087833	3300010376	Tropical Forest Soil	EPKGGVMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEVARRSCWLERRQDAATA*
Ga0126381_1050497532	3300010376	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKAL
Ga0126383_103404992	3300010398	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0137365_100524835	3300012201	Vadose Zone Soil	QFVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0137363_114789591	3300012202	Vadose Zone Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEATEAAR*
Ga0137378_109489193	3300012210	Vadose Zone Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0137377_106515243	3300012211	Vadose Zone Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALIRSTEAVEAAR*
Ga0137361_114807111	3300012362	Vadose Zone Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALAYAKALVRSTEATEAAR*
Ga0126369_109033953	3300012971	Tropical Forest Soil	MDDTTFPLMTRRQFVEFVHRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR*
Ga0126369_112177611	3300012971	Tropical Forest Soil	AMEDTAFPLLTRRQLVELVRRQTGIPLTLSRLMKDGATGRAPRPAAVFGRRFLYSEAAALAYAKELIRPTEAVETAP*
Ga0182036_100342391	3300016270	Soil	RQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0182036_101949143	3300016270	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEAD
Ga0182033_101726731	3300016319	Soil	MDNTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAIEAAR
Ga0182033_104901521	3300016319	Soil	TTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0182033_110353571	3300016319	Soil	MDDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEADAL
Ga0182035_100403286	3300016341	Soil	REMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0182035_106590741	3300016341	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADAL
Ga0182032_100622837	3300016357	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAVEAAR
Ga0182032_111690831	3300016357	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADAL
Ga0182034_103985483	3300016371	Soil	MDDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEA
Ga0182037_109136251	3300016404	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALS
Ga0210402_117854312	3300021478	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGALGRAPRPTAIFGKRHLYSKADALAYAKALVRSTRAY
Ga0126371_105496612	3300021560	Tropical Forest Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAAR
Ga0126371_116672663	3300021560	Tropical Forest Soil	MDETTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALTYAKALVRSTEATEAAR
Ga0207693_100147298	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEPIEAAR
Ga0207665_114445151	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTEIFGKRYLYSEADALTYAKALVRS
Ga0209648_104786711	3300026551	Grasslands Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0209488_109966012	3300027903	Vadose Zone Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALAYAKALVRSTEATEAAR
Ga0318516_101016352	3300031543	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318516_105699501	3300031543	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALGYAKALVRSTETVEAAR
Ga0318541_101128313	3300031545	Soil	FPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318541_101977791	3300031545	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGHAPKPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0318541_102309402	3300031545	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAA
Ga0318541_106559842	3300031545	Soil	DTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAEEGAR
Ga0318541_108069052	3300031545	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEPARRPRSLERRQDAATA
Ga0318573_103240421	3300031564	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALGYAKALVRSTETVE
Ga0318573_104761852	3300031564	Soil	FPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0310915_103167911	3300031573	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALV
Ga0318542_107501361	3300031668	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0318561_102349182	3300031679	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAEEGAR
Ga0318560_104411661	3300031682	Soil	SPYFGEVREPKGREMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318496_102753142	3300031713	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRAR
Ga0306917_108815033	3300031719	Soil	FVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0306918_100847551	3300031744	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALGYAKA
Ga0306918_101597861	3300031744	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAK
Ga0306918_113060002	3300031744	Soil	MDDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEADALGYAKALLGSTEAVEAAR
Ga0318502_101184771	3300031747	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSEADALT
Ga0318494_105995961	3300031751	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYS
Ga0318535_103434222	3300031764	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSD
Ga0318535_104245311	3300031764	Soil	FVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318509_102071671	3300031768	Soil	DTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0318521_101818352	3300031770	Soil	MDDTAFPLMTRRQVVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0318546_102359714	3300031771	Soil	QLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALGYAKALVRSTETVEAAR
Ga0318546_102423931	3300031771	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKR
Ga0318498_104422261	3300031778	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRFLYSEADALSYAKALVRSTETIEAAR
Ga0318547_101019744	3300031781	Soil	TFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEAARRSCSLERHQDAATA
Ga0318548_101454522	3300031793	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALS
Ga0318550_106129581	3300031797	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSE
Ga0318523_104735522	3300031798	Soil	YVGEVREPKGREMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318497_101622841	3300031805	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSEADALTYAKALVRSSERGHRAASIASV
Ga0318497_106453111	3300031805	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYA
Ga0318568_100890492	3300031819	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSDADALTYAKALVRSTEAIEAAR
Ga0318564_103173002	3300031831	Soil	LMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0310917_100279861	3300031833	Soil	PYFGEVREPKGREMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0306919_110417001	3300031879	Soil	DTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAIEAAR
Ga0318544_103454412	3300031880	Soil	TFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0306925_103654422	3300031890	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAEEGAR
Ga0318522_104230882	3300031894	Soil	FGEVREPKGREMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTETIEPARRPRSLERRQDAATA
Ga0318520_101540511	3300031897	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSE
Ga0306923_104582192	3300031910	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGHAPKPTAIFGKRYLYSEADALSYAKALVRSTEAV
Ga0306923_114603551	3300031910	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAIEAAR
Ga0310913_101456742	3300031945	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGAAGRGPRPAAVFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0310910_100212981	3300031946	Soil	RQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEADALGYAKALVRSTETVEAAR
Ga0310910_110482052	3300031946	Soil	MDDTAFPLLTRRQVVELVRRQTGVPLTLSRLMKDGATGRAPKPAAVFGRQHLYSEADALSYAKALIRSTEAVEAAR
Ga0306926_107778112	3300031954	Soil	RPMDDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEADALGYAKALLGSTEAVEAAR
Ga0306926_130282251	3300031954	Soil	DDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGAAGRGPRPAAVFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0306922_120703792	3300032001	Soil	MVDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEADALGYAKALLGSTEAVEAAR
Ga0318569_105347221	3300032010	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLY
Ga0318549_103760011	3300032041	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIE
Ga0318556_105892111	3300032043	Soil	PLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0318558_101237462	3300032044	Soil	MDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYA
Ga0318575_100872903	3300032055	Soil	MDDTAFPLMTRRQFVEFVKRQTGIPLTYSRLMKDGASGRGPRPAAVFGKRYLYSEADALTYAKALVRS
Ga0318533_109078752	3300032059	Soil	AFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYSEADALGYAKALLGSTEAVEAAR
Ga0306924_103035424	3300032076	Soil	MDDTAFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPKPTAIFGKRYLYSEADALSYAKALVRSTEAV
Ga0306924_117171361	3300032076	Soil	SMDDTTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALSYAKALVRSTEAIEAAR
Ga0318518_100725073	3300032090	Soil	MDDAAFPLMTRRQLVEFVQRQTGIPLTYSRLMKDGATGRAPRPTAIFGKRYLYSEA
Ga0318540_100164061	3300032094	Soil	TTFPLMTRRQFVEFVQRQTGIPLTYSRLMKDGAIGRAPRPTAIFGKRYLYSEADALTYAKALVRSTEAIEAAR
Ga0310914_118729891	3300033289	Soil	MDDTAFPLMTRLQLVEFVQRQTGIPLTYSRLMKDGATGHAPRPTAIFGKRYLYS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067003

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences