Metagenome / Metatranscriptome Family F067053

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067053
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	63 residues
Representative Sequence	MEDEGFVDDSFIEETAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALE
Number of Associated Samples	104
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.95 %
% of genes near scaffold ends (potentially truncated)	30.16 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.540 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.397 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.35% β-sheet: 0.00% Coil/Unstructured: 45.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.124.1.1: Phospholipase C	d1ca1a1	1ca1	0.71166
a.118.9.0: automated matches	d5woza1	5woz	0.70907
a.182.1.1: GatB/YqeY domain	d1ng6a_	1ng6	0.69509
a.124.1.1: Phospholipase C	d1p5xa_	1p5x	0.69339
a.102.1.9: Trehalase-like	d2jg0a_	2jg0	0.69243

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00892	EamA	31.75
PF00694	Aconitase_C	18.25
PF04828	GFA	13.49
PF00216	Bac_DNA_binding	3.17
PF02798	GST_N	2.38
PF00497	SBP_bac_3	1.59
PF13521	AAA_28	1.59
PF00722	Glyco_hydro_16	1.59
PF00881	Nitroreductase	1.59
PF08447	PAS_3	1.59
PF00196	GerE	0.79
PF12158	DUF3592	0.79
PF13103	TonB_2	0.79
PF05199	GMC_oxred_C	0.79
PF00005	ABC_tran	0.79
PF02776	TPP_enzyme_N	0.79
PF04909	Amidohydro_2	0.79
PF08352	oligo_HPY	0.79
PF07883	Cupin_2	0.79
PF14026	DUF4242	0.79
PF10431	ClpB_D2-small	0.79
PF09587	PGA_cap	0.79
PF03466	LysR_substrate	0.79
PF02515	CoA_transf_3	0.79
PF03734	YkuD	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	13.49
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	3.17
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	1.59
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.79
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.79
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.54 %
Unclassified	root	N/A	17.46 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.70 %
Unclassified	root	N/A	17.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.14 %
Unclassified	root	N/A	17.46 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	42.06 %
Unclassified	root	N/A	17.46 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	42.06 %
Unclassified	root	N/A	17.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.79 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.79 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	42.06 %
Unclassified	root	N/A	17.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	42.06 %
Unclassified	root	N/A	17.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	0.79 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	42.06 %
Unclassified	root	N/A	17.46 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	0.79 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10016241	All Organisms → cellular organisms → Bacteria → Proteobacteria	4139	Open in IMG/M
3300004479\|Ga0062595_100744205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300005167\|Ga0066672_10018828	All Organisms → cellular organisms → Bacteria → Proteobacteria	3568	Open in IMG/M
3300005171\|Ga0066677_10049411	All Organisms → cellular organisms → Bacteria	2098	Open in IMG/M
3300005175\|Ga0066673_10107569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1505	Open in IMG/M
3300005175\|Ga0066673_10525845	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005175\|Ga0066673_10536242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300005176\|Ga0066679_10534746	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300005178\|Ga0066688_10642596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300005179\|Ga0066684_10643426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300005179\|Ga0066684_10689548	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005179\|Ga0066684_10789917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300005184\|Ga0066671_10113883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1522	Open in IMG/M
3300005184\|Ga0066671_10407608	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005184\|Ga0066671_10436999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300005332\|Ga0066388_103419494	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300005332\|Ga0066388_107754410	Not Available	538	Open in IMG/M
3300005344\|Ga0070661_101200697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300005435\|Ga0070714_100100828	Not Available	2543	Open in IMG/M
3300005435\|Ga0070714_100273655	All Organisms → cellular organisms → Bacteria → Proteobacteria	1566	Open in IMG/M
3300005436\|Ga0070713_102030661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300005436\|Ga0070713_102093670	Not Available	549	Open in IMG/M
3300005437\|Ga0070710_10180849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1320	Open in IMG/M
3300005440\|Ga0070705_100075960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2047	Open in IMG/M
3300005536\|Ga0070697_100139431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2038	Open in IMG/M
3300005537\|Ga0070730_10180680	Not Available	1416	Open in IMG/M
3300005541\|Ga0070733_10182031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1371	Open in IMG/M
3300005560\|Ga0066670_10313303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	955	Open in IMG/M
3300005561\|Ga0066699_10103679	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300005564\|Ga0070664_100546352	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300005566\|Ga0066693_10091877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300005575\|Ga0066702_10377496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	863	Open in IMG/M
3300005575\|Ga0066702_10467232	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300005575\|Ga0066702_10823846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300005587\|Ga0066654_10433534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300005764\|Ga0066903_107189862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300006028\|Ga0070717_11117475	Not Available	718	Open in IMG/M
3300006173\|Ga0070716_100512378	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300006175\|Ga0070712_101595781	Not Available	571	Open in IMG/M
3300006581\|Ga0074048_10171440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300006755\|Ga0079222_10149931	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300006794\|Ga0066658_10161728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1148	Open in IMG/M
3300006794\|Ga0066658_10333530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810	Open in IMG/M
3300006806\|Ga0079220_10443654	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300006854\|Ga0075425_100084671	All Organisms → cellular organisms → Bacteria	3588	Open in IMG/M
3300006854\|Ga0075425_100914542	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300006854\|Ga0075425_102606479	Not Available	559	Open in IMG/M
3300006893\|Ga0073928_10000451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	97585	Open in IMG/M
3300006903\|Ga0075426_10162825	All Organisms → cellular organisms → Bacteria	1611	Open in IMG/M
3300006914\|Ga0075436_100029140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	3796	Open in IMG/M
3300007788\|Ga0099795_10339826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300009137\|Ga0066709_102249928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	750	Open in IMG/M
3300009137\|Ga0066709_102989893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300010046\|Ga0126384_10833099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300010326\|Ga0134065_10209073	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300010359\|Ga0126376_12926739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300010373\|Ga0134128_10250569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1987	Open in IMG/M
3300010373\|Ga0134128_12552122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300012096\|Ga0137389_10863511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300012200\|Ga0137382_10004637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6675	Open in IMG/M
3300012200\|Ga0137382_10195651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1387	Open in IMG/M
3300012205\|Ga0137362_11354760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300012208\|Ga0137376_10427793	Not Available	1150	Open in IMG/M
3300012211\|Ga0137377_10148378	Not Available	2245	Open in IMG/M
3300012212\|Ga0150985_103149825	Not Available	825	Open in IMG/M
3300012917\|Ga0137395_10004827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6884	Open in IMG/M
3300012923\|Ga0137359_11506002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300012924\|Ga0137413_10270996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300012925\|Ga0137419_10213895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1434	Open in IMG/M
3300012929\|Ga0137404_10984461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	771	Open in IMG/M
3300012930\|Ga0137407_12060749	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012957\|Ga0164303_10511446	Not Available	771	Open in IMG/M
3300012960\|Ga0164301_11395052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300012986\|Ga0164304_11710622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300012989\|Ga0164305_10363802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1094	Open in IMG/M
3300014497\|Ga0182008_10238311	Not Available	935	Open in IMG/M
3300015241\|Ga0137418_10906924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300015242\|Ga0137412_10073231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2787	Open in IMG/M
3300015245\|Ga0137409_10348042	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300015356\|Ga0134073_10040403	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300015357\|Ga0134072_10388975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300015371\|Ga0132258_10284144	All Organisms → cellular organisms → Bacteria → Proteobacteria	4062	Open in IMG/M
3300015372\|Ga0132256_102779524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300017823\|Ga0187818_10005754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5290	Open in IMG/M
3300018061\|Ga0184619_10253297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	809	Open in IMG/M
3300018086\|Ga0187769_11411221	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300018431\|Ga0066655_10455685	Not Available	845	Open in IMG/M
3300018433\|Ga0066667_10970069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300018468\|Ga0066662_10370724	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300018468\|Ga0066662_12966977	Not Available	504	Open in IMG/M
3300018482\|Ga0066669_10308701	Not Available	1289	Open in IMG/M
3300018482\|Ga0066669_11349355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300019888\|Ga0193751_1125177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300020006\|Ga0193735_1046477	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300020006\|Ga0193735_1078814	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300020199\|Ga0179592_10358476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300020580\|Ga0210403_11209279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300020581\|Ga0210399_10668133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300021170\|Ga0210400_10002748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15951	Open in IMG/M
3300021362\|Ga0213882_10010538	All Organisms → cellular organisms → Bacteria	3343	Open in IMG/M
3300021445\|Ga0182009_10381550	Not Available	725	Open in IMG/M
3300021478\|Ga0210402_12025613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300021560\|Ga0126371_10068724	All Organisms → cellular organisms → Bacteria → Proteobacteria	3439	Open in IMG/M
3300021560\|Ga0126371_12512897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300022557\|Ga0212123_10000151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	235782	Open in IMG/M
3300022756\|Ga0222622_10419379	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300025910\|Ga0207684_10039379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4009	Open in IMG/M
3300025929\|Ga0207664_10918550	Not Available	786	Open in IMG/M
3300026088\|Ga0207641_10850612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	904	Open in IMG/M
3300026330\|Ga0209473_1272475	Not Available	572	Open in IMG/M
3300026548\|Ga0209161_10258302	Not Available	896	Open in IMG/M
3300026550\|Ga0209474_10493056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300027388\|Ga0208995_1084376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300027645\|Ga0209117_1136108	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300027663\|Ga0208990_1042666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1390	Open in IMG/M
3300027669\|Ga0208981_1006521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2921	Open in IMG/M
3300027681\|Ga0208991_1038569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1444	Open in IMG/M
3300027775\|Ga0209177_10101095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	914	Open in IMG/M
3300027857\|Ga0209166_10288139	Not Available	865	Open in IMG/M
3300028536\|Ga0137415_10335224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300028536\|Ga0137415_11016666	Not Available	640	Open in IMG/M
3300028906\|Ga0308309_11453852	Not Available	586	Open in IMG/M
3300031057\|Ga0170834_108474055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1117	Open in IMG/M
3300031231\|Ga0170824_128008446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300031474\|Ga0170818_103187912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1127	Open in IMG/M
3300031754\|Ga0307475_10250144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1420	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.48%
Host-Associated	Host-Associated	9.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.51%
Plants	Host-Associated → Plants	9.52%
Aquatic	Environmental → Aquatic	3.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.38%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.59%
Sediment	Environmental → Aquatic → Sediment	1.59%
Freshwater	Environmental → Aquatic → Freshwater	0.79%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.29%
Loam	Environmental → Terrestrial → Soil → Loam	20.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.38%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.17%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.38%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.38%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.38%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100162413	3300001661	Forest Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERIGRD*
Ga0062595_1007442052	3300004479	Soil	MEDEGFVDDSFIEETAWEYVGLHGNECVPMLRRFAEAAERAGDALSAQTWRAVAEAAERILALT*
Ga0066672_100188283	3300005167	Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0066677_100494111	3300005171	Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0066673_101075691	3300005175	Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIADAAERILALE*
Ga0066673_105258452	3300005175	Soil	MEDEGFVDDGFIEETAWEYVGLHGSACVSVLRRLAEAAERSGDELSAQTWRAIAEAAERILASGWESRFDA*
Ga0066673_105362421	3300005175	Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAVATERAGDALSAQTWRAIADAA
Ga0066679_105347461	3300005176	Soil	VDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0066688_106425962	3300005178	Soil	MEDEGFVDDSFIEETAWEYVDLHGKACISVLRRLAEATERAGDPLSAQTWRAIADAAERILALE*
Ga0066684_106434261	3300005179	Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0066684_106895482	3300005179	Soil	MEDEGFVDDSFIEETAWEYVDLHGKACLSVLRRLAEAAERAGDPLSAQTWRAIADAAERITVVD*
Ga0066684_107899172	3300005179	Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIA
Ga0066671_101138831	3300005184	Soil	RIGSAMEDEGFVDDGFIEETAWEYVGLHGKGSVSMLSRLAEAAARAGDDVSAQTWRAIAEAAERILASRWE*
Ga0066671_104076082	3300005184	Soil	MEDEGFVDDRFIEETAWEYLSLHGRESVALLLRLAEATERAGDALSAQTWRAVADAAERILALE*
Ga0066671_104369991	3300005184	Soil	MEDEGFVDDSFIEEMAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIAAAAERILALK*
Ga0066388_1034194942	3300005332	Tropical Forest Soil	MEDEGFVDDGFIEETAWEYASLHGKACVPMLRRLALAAEQAGDTVQAQTWRAIAEAAAHILALE*
Ga0066388_1077544101	3300005332	Tropical Forest Soil	MEDEGFVEDGFIEETAWEYASLHGKACVPMLRRLAMAAEQSGDVVGAQTWRAIAEAAERLLALD*
Ga0070661_1012006971	3300005344	Corn Rhizosphere	MEDEGFVDDSFIEETAWEYVGLHGRECVSLLRRLGDAAERAGDALSAQTWRAVAEA
Ga0070714_1001008282	3300005435	Agricultural Soil	RNMEDEGFVDDSFIEETAWEYVGLHGNECVPMLRRFAEAAERAGDALSAQTWRAVAEAAERILALT*
Ga0070714_1002736552	3300005435	Agricultural Soil	MEDEGFVDDGFIEETAWEYVGLHGQECVPMLRRLAEAAERAGDVVGAQTWRAIAEAAERILALK*
Ga0070713_1020306612	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RNGMEDEGFVDDGFIEETAWEYVGLYGDRSASVLRQLAEAAERAGYVVSAHTWRAVAEAAERIFKG*
Ga0070713_1020936701	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDGFIEETAWEYVGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAERIFSG*
Ga0070710_101808492	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAIAEAAERIVTLE*
Ga0070705_1000759606	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDSFIEEAAWDYVGLHGSACLSVLRQLVGVAEQAGDDVAAQTWRAIAEAAARILSV*
Ga0070697_1001394311	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GFVDDSFIEEAAWDYVGLHGSACLSVLRQLVGVAEQAGDDVAAQTWRAIAEAAARILSV*
Ga0070730_101806802	3300005537	Surface Soil	MEDEGFVDDGFIEETAWEYFGRYGGRGASLLRELAASAERAGDAIAAQTWRAIAEAAERIAGSGSG*
Ga0070733_101820311	3300005541	Surface Soil	MEDEGFVDDGFIEEAAWEYFGRYGRRGASLLRELAASAERAGDAIAAQTWRAVAEAAERIAGSGPG*
Ga0066670_103133031	3300005560	Soil	MEDEGFVDDSFIEETAWEYVDLHGKACLSVLRRLAEAAERAGDPLSAQTWRAIADAAERI
Ga0066699_101036793	3300005561	Soil	MEDEGFVDDSFIEEMAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0070664_1005463522	3300005564	Corn Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK*
Ga0066693_100918772	3300005566	Soil	MEDEGFVDDSFIEETAWEYVDLHGKACLSLLRRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0066702_103774962	3300005575	Soil	MEDEGFVDDSFIEETAWEYVGLHGDRCVRVLRQLAEATEQSGDALSAQTWRAIAEAADRILAMGVGK*
Ga0066702_104672322	3300005575	Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIADAAERILALE*
Ga0066702_108238462	3300005575	Soil	MEDEGFVDDSFIEEMAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAI
Ga0066654_104335342	3300005587	Soil	MEDEGFVDDSFIEETAWEYVGLHGKACLSVLRRLSEATERAGDSLSAQTWRAV
Ga0066903_1071898622	3300005764	Tropical Forest Soil	MEDEGFVDDSFIEETAWEYVSYYGEECLPMLRRLGGTAERAGDVVAAQTWRAVAEAAERLIAADRSGS*
Ga0070717_111174752	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FIEETAWEYVGLHGNECVPMLRRFAEAAERAGDALSAQTWRAVAEAAERILALT*
Ga0070716_1005123782	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGKAAVAILSRVAEAAARAGDELSAQTWRAIAEAAERILASHWE*
Ga0070712_1015957812	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDGFIEETAWEYVGLYGDRSAYVLRQLAEAAERAGDVVSAHTWRAVAEAAERIFSG*
Ga0074048_101714402	3300006581	Soil	MEDEGFVDDGFIEETAWEYVGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAERIFKG*
Ga0079222_101499312	3300006755	Agricultural Soil	MEDEGFVDDGFIEETAWEYVGLHGRECVSLLRRLGDAAERAGDALSAQTWRAVAEAAERILALK*
Ga0066658_101617282	3300006794	Soil	MEDEGFVDDGFIEETAWEQVDLYGSASIPMLRRLAEAAERSGDELSAQTWRAIAEAAERILALGVGK*
Ga0066658_103335301	3300006794	Soil	MEDEGFVDDSFIEEMAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALK*
Ga0079220_104436541	3300006806	Agricultural Soil	SFIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK*
Ga0075425_1000846712	3300006854	Populus Rhizosphere	MEDEGFVDDSFIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK*
Ga0075425_1009145422	3300006854	Populus Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGDRCARVLQQLAEAAEQSGDALSAQTWRAIAEAAERILGW*
Ga0075425_1026064792	3300006854	Populus Rhizosphere	FIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAIAEAAERIVTLE*
Ga0073928_1000045154	3300006893	Iron-Sulfur Acid Spring	MEDEGFVDDGFIEATAWEFFGRHGDQCVSMLQRLAEAADRAGDLTAAQTWRAIAEAAGRIVSRG*
Ga0075426_101628251	3300006903	Populus Rhizosphere	RRNMEDEGFVDDGFIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAIAEAAERIVTLE*
Ga0075436_1000291401	3300006914	Populus Rhizosphere	FIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK*
Ga0099795_103398261	3300007788	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERICRD*
Ga0066709_1022499282	3300009137	Grasslands Soil	MTMEDEGFVDDSFIEETAWECVGLYGSACLSTLRKLADSTAKAGDDVSAQTWRAIAEAAERIVGIGYETGGSFGAPG*
Ga0066709_1029898931	3300009137	Grasslands Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIAD
Ga0126384_108330991	3300010046	Tropical Forest Soil	MEDEGFVDDGFIEETAWEYASLHGKACVPMLRRLALAAEQAGDTVQAQTWRAIAEAAAHI
Ga0134065_102090731	3300010326	Grasslands Soil	MEDEGFVDDTFIEETAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0126376_129267391	3300010359	Tropical Forest Soil	MEDEGFVDDGFIEETAWEYASLHGKACVPMLRRLALAAEQAGDTVQAQTWRAIAEAAAHILVLE*
Ga0134128_102505692	3300010373	Terrestrial Soil	MEDEGFVDDSFIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAIAEAAERIVTLE*
Ga0134128_125521222	3300010373	Terrestrial Soil	EDEGFVDDGFIEETAWDYVGRCGSAAVSELRRLAEAAARSGDELSAQTWRAIAGAAERILALRVRK*
Ga0137389_108635112	3300012096	Vadose Zone Soil	MEDDGLVDDDFIEEVAWEYVGLHGDASMSMLRKQAELVETAGDRLSAQTWHAIAEAAERILMNFHRRRSHHD*
Ga0137382_100046376	3300012200	Vadose Zone Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLQLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0137382_101956511	3300012200	Vadose Zone Soil	MEDDGFVDDGFIEETAWEYVGLHGGACVSVLRRVAESAERGGDELSGQTWRAIAEAAERILASGRESRFDA*
Ga0137362_113547602	3300012205	Vadose Zone Soil	MMEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERICRD*
Ga0137376_104277932	3300012208	Vadose Zone Soil	IEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0137377_101483782	3300012211	Vadose Zone Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILTLE*
Ga0150985_1031498252	3300012212	Avena Fatua Rhizosphere	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAKTWRAIADAAERILALE*
Ga0137395_100048274	3300012917	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAVERICRD*
Ga0137359_115060021	3300012923	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAV
Ga0137413_102709962	3300012924	Vadose Zone Soil	MEDDGLVDDDFIEEVAWEYVGLHGEASISMLRKQAELVETAGDRLSAQTWHAIAEAAERILMNFHRRRSHHD*
Ga0137419_102138951	3300012925	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERSCRD*
Ga0137404_109844612	3300012929	Vadose Zone Soil	MEDDGLVDDDFIEEVAWEYVGLHGEASMSMLRKHAELVEMAGDRLSAQTWHAIAEAAERILMNFHRRRSHHD*
Ga0137407_120607491	3300012930	Vadose Zone Soil	DDFIEEVAWEYVGLHGEASMSMLRKHAELVEMAGDRLSAQTWHAIAEAAERILMNFHRRRSHHD*
Ga0164303_105114461	3300012957	Soil	VSLHGKESMSLLLRLAAAADRASDTVSAQTWRAIAEAAARIVAVE*
Ga0164301_113950521	3300012960	Soil	MEDEGFVDDSFIEETAWESVGLHGRESVALLRRLAAATERAGDALSAQTWRAIADAAERILGLG*
Ga0164304_117106221	3300012986	Soil	MEDEGFVDDSFIEETAWEYVGLHGKACLSVLRRLSEATERAGDPLSAQTWRAVAEAAERILALDEWPTP*
Ga0164305_103638021	3300012989	Soil	MEDEGFVDDSFIEETAWEYVGLHGRESVALLRRLAAATERAGDALSAQTWRAIADAAERI
Ga0182008_102383112	3300014497	Rhizosphere	EGFVDDSFIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK*
Ga0137418_109069242	3300015241	Vadose Zone Soil	MEDDGLVDDDFIEEVAWEYVGLHGEASMSMLRKQAELVETAGDRLSAQTWHAIAEAAERILMNFHRRRSYHD*
Ga0137412_100732312	3300015242	Vadose Zone Soil	MGDEGFVDDSFIEEAAWEYVSLHGRESVALLLQLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0137409_103480421	3300015245	Vadose Zone Soil	MEDDGLVDDDFIEEVAWEYVGRHGEASMSMLRKQAEPVETAGDRLSAQTWHAIAEAVERILMNLHRR
Ga0134073_100404032	3300015356	Grasslands Soil	MEDEGFVDDSFIEETAWKCVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE*
Ga0134072_103889751	3300015357	Grasslands Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAVATERAGDALSAQTWRAIADAADRILALE*
Ga0132258_102841442	3300015371	Arabidopsis Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGDRCARVLRQLAEAAEQSGDALSAQTWRAIAEAAERILGW*
Ga0132256_1027795241	3300015372	Arabidopsis Rhizosphere	MEDEGFVDDGFIEDTAWEYVGLHGDRCARVLRQLAEAAEQSGDALSAQTWRAIAEAAERILGW*
Ga0187818_100057543	3300017823	Freshwater Sediment	MEDEGFVDDDFVEETAWKYVALHGSAALSMLRELAEAAEKAGDVLSGQTWRAISEAAERI
Ga0184619_102532971	3300018061	Groundwater Sediment	MEDEGFVDDSFIEETAWEYVGLYGSACISMLRRLADSAERAGDEISAQTWCAIAEAAERIMAIGYEPGEMFGAPG
Ga0187769_114112211	3300018086	Tropical Peatland	VEDEGYVDDEFIDETAWSYVFRHGNDSVRLLRELAESAEASGDALSADTWRAIAEAAERMIGPA
Ga0066655_104556852	3300018431	Grasslands Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIADAAERILALE
Ga0066667_109700692	3300018433	Grasslands Soil	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGNALSAQTWRAIADAAERILALE
Ga0066662_103707242	3300018468	Grasslands Soil	MEDEGFVDDSFIEETAWECVSLHGRESVALLLRLAEATERAGDALSAQGWRAIADAAERILALE
Ga0066662_129669772	3300018468	Grasslands Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALE
Ga0066669_103087012	3300018482	Grasslands Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAVATERAGDALSAQTWRAIADAADRILALE
Ga0066669_113493551	3300018482	Grasslands Soil	MEDEGFVDDGFIEETAWEYVGLHGSACVSVLRRLAEAAERSGDELSGQTWHAIAEAAERILASGW
Ga0193751_11251771	3300019888	Soil	MEDEGFVDDSFIEATAWEYVGLHGKGCVSMLLRLAVAAEHAGDGLSAQTWRAIAEAAERIVALE
Ga0193735_10464772	3300020006	Soil	MEDEGFVDDSFIEETAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE
Ga0193735_10788142	3300020006	Soil	MEDEGFVDDSFIEETAWEYVGLHGSACLSVLRQLAEIAEQAGDEVAAQTWRAIAEAGARILALGWEGRFDA
Ga0179592_103584761	3300020199	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERICRD
Ga0210403_112092792	3300020580	Soil	MEDEGFVDASFIEATAWEYVSLHGDRCVSMLLPLAELAENAGDGLSAQTWRAIAEAAKRIVT
Ga0210399_106681332	3300020581	Soil	GFIEETAWEYFGRHGDRSASVLRRLAEAAERAGDVVAAQTWQAVAEAAERIFSG
Ga0210400_100027486	3300021170	Soil	MEDEGFVDDGFIEETAWEYFGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAARIFKG
Ga0213882_100105382	3300021362	Exposed Rock	MEDEGFVDDSFIEEMAWEYASLQGKDCVPMLRQLAAAAEQAGDTVAAQTWRAITEAAARILALESDPR
Ga0182009_103815502	3300021445	Soil	MEDEGFVDDSFIEETAWEYVGLHGQECVSLLRRLGDAAERAGDALSAQTWRAVADAAERILALK
Ga0210402_120256132	3300021478	Soil	MEDEGFVDDGFIEETAWEYFGLYGDRSASVLRQLAEAAERAGDVVSAQTWRAVAEAAERIFKG
Ga0126371_100687244	3300021560	Tropical Forest Soil	MEDEGFVDDGFIEETAWEYASLHGKACVPMLRRLALAAEQAGDTVQAQTWRAIAEAAAHILALE
Ga0126371_125128971	3300021560	Tropical Forest Soil	MEDEGFVDDSFIEETAWEYVSYYGEECLPMLRRLGGTAERAGDVVAAQTWRAVAEAAERLIAADRSGS
Ga0212123_1000015184	3300022557	Iron-Sulfur Acid Spring	MEDEGFVDDGFIEATAWEFFGRHGDQCVSMLQRLAEAADRAGDLTAAQTWRAIAEAAGRIVSRG
Ga0222622_104193792	3300022756	Groundwater Sediment	MEDEGFVDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE
Ga0207684_100393792	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEDEGFVDDSFIEEAAWDYVGLHGSACLSVLRQLVGVAEQAGDDVAAQTWRAIAEAAARILSV
Ga0207664_109185502	3300025929	Agricultural Soil	PYSHRRNMEDEGFVDDSFIEETAWEYVGLHGKECVSLLRRLAEAAERAGDAVSAQTWRAVAEAAERIPALK
Ga0207641_108506122	3300026088	Switchgrass Rhizosphere	MEDEGFVDDGFIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAI
Ga0209473_12724752	3300026330	Soil	GFVDDSFIEETAWEYVDLHGKACLSVLRRLAEAAERAGDPLSAQTWRAIADAAERITVVD
Ga0209161_102583022	3300026548	Soil	RTAPHSRRRNMEDEGFVDDSFIEEAAWEYVSLHGRESVALLRRLAEATERAGDALSAQTWRAIADAAERILALE
Ga0209474_104930562	3300026550	Soil	MEDEGFVDDSFIEETAWEYVDLHGKACLSVLRRLAEAAERAGDPLSAQTWRAIADAAERITVVD
Ga0208995_10843762	3300027388	Forest Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAE
Ga0209117_11361082	3300027645	Forest Soil	MEDEGFVDDSFIEATAWEYVSLHGDRGLSTLLRLAEIAERAGDGLSAQTWRAIAEAAGRIIALE
Ga0208990_10426665	3300027663	Forest Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERI
Ga0208981_10065213	3300027669	Forest Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSVQTWRAVAEAAERIGRD
Ga0208991_10385694	3300027681	Forest Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAAERIGRD
Ga0209177_101010951	3300027775	Agricultural Soil	MEDEGFVDDGFIEETAWEYVGLHGRECVSLLLRLADAAERAGDIVGAQTWRAIAEAAERIVT
Ga0209166_102881392	3300027857	Surface Soil	MEDEGFVDDGFIEETAWEYFGRYGGRGASLLRELAASAERAGDAIAAQTWRAIAEAAERIAGSGSG
Ga0137415_103352241	3300028536	Vadose Zone Soil	MEDEGFVDDGFIEETAWEYVGLHGKRSASVLRQLADIAERAGDVVSAQTWRAVAEAVERICRD
Ga0137415_110166662	3300028536	Vadose Zone Soil	VDDSFIEEAAWEYVSLHGRESVALLLRLAEATERAGDALSAQTWRAIADAAERILALE
Ga0308309_114538521	3300028906	Soil	MEDEGFADDDFIEDVAREYVGLHGTQSKAVLEERAEIAEAAGDQLSAQTWRAIAEAAESIIEM
Ga0170834_1084740552	3300031057	Forest Soil	MEDEGFVDDGFIEETAWEYFGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAERISRG
Ga0170824_1280084462	3300031231	Forest Soil	PEPRTRNGMEDEGFVDDGFIEETAWEYFGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAERISRG
Ga0170818_1031879122	3300031474	Forest Soil	MEDEGFVDDGFIEETAWEYFGLYGDRSASVLRQLAEAAERAGDVVSAHTWRAVAEAAQRIFKG
Ga0307475_102501442	3300031754	Hardwood Forest Soil	MEDEGFVDDSFIEATAWEYVSLHGKESVSMLLRLAAAADRAGDALSAQTWRAIAEAAARIVAVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067053

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences