NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F067141

Metagenome / Metatranscriptome Family F067141

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067141
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 60 residues
Representative Sequence CMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVRGGVVVVGDRIGVAGAVEIAG
Number of Associated Samples 114
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.63 %
% of genes near scaffold ends (potentially truncated) 92.06 %
% of genes from short scaffolds (< 2000 bps) 89.68 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.825 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(22.222 % of family members)
Environment Ontology (ENVO) Unclassified
(24.603 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.095 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 28.92%    β-sheet: 14.46%    Coil/Unstructured: 56.63%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
d.96.2.2: DVU1097-liked2o34a12o340.68285
d.153.1.1: Class II glutamine amidotransferasesd1ofda31ofd0.68205
d.153.1.1: Class II glutamine amidotransferasesd1gdoa_1gdo0.66134
d.127.1.0: automated matchesd3tb5a_3tb50.65967
d.153.1.1: Class II glutamine amidotransferasesd1te5a_1te50.65502

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF01653DNA_ligase_aden 80.95
PF03120DNA_ligase_OB 8.73
PF14520HHH_5 3.17
PF12826HHH_2 1.59
PF00763THF_DHG_CYH 1.59
PF00398RrnaAD 0.79
PF11838ERAP1_C 0.79
PF02882THF_DHG_CYH_C 0.79
PF02686Glu-tRNAGln 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG0272NAD-dependent DNA ligaseReplication, recombination and repair [L] 89.68
COG01905,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolaseCoenzyme transport and metabolism [H] 2.38
COG003016S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)Translation, ribosomal structure and biogenesis [J] 0.79
COG0686Alanine dehydrogenase (includes sporulation protein SpoVN)Amino acid transport and metabolism [E] 0.79
COG0721Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunitTranslation, ribosomal structure and biogenesis [J] 0.79

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.83 %
UnclassifiedrootN/A3.17 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908032|Perma_A_C_ConsensusfromContig50988All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria887Open in IMG/M
3300000858|JGI10213J12805_10951772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia639Open in IMG/M
3300000891|JGI10214J12806_12128687All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300000891|JGI10214J12806_12650328All Organisms → cellular organisms → Bacteria → Terrabacteria group548Open in IMG/M
3300000953|JGI11615J12901_11791592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia725Open in IMG/M
3300000956|JGI10216J12902_103591360All Organisms → cellular organisms → Bacteria2302Open in IMG/M
3300001213|JGIcombinedJ13530_107007587All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300001686|C688J18823_10849025All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300002530|C687J35503_10115261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia684Open in IMG/M
3300003203|JGI25406J46586_10176905All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300003998|Ga0055472_10091325All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300004020|Ga0055440_10214332All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300004081|Ga0063454_100074806All Organisms → cellular organisms → Bacteria1490Open in IMG/M
3300004157|Ga0062590_100731366All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300004157|Ga0062590_101426920All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300004480|Ga0062592_100789473All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300005204|Ga0068997_10157086All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300005332|Ga0066388_101663048All Organisms → cellular organisms → Bacteria1127Open in IMG/M
3300005334|Ga0068869_101425775All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300005340|Ga0070689_100348757All Organisms → cellular organisms → Bacteria1241Open in IMG/M
3300005343|Ga0070687_100567349All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300005345|Ga0070692_10880648All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300005459|Ga0068867_100774636All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300005518|Ga0070699_100508661All Organisms → cellular organisms → Bacteria1094Open in IMG/M
3300005546|Ga0070696_100253299All Organisms → cellular organisms → Bacteria1332Open in IMG/M
3300005718|Ga0068866_10665871All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300006163|Ga0070715_10783386All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300006791|Ga0066653_10138104All Organisms → cellular organisms → Bacteria1169Open in IMG/M
3300006865|Ga0073934_10831649All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria524Open in IMG/M
3300009012|Ga0066710_100849601All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1402Open in IMG/M
3300009090|Ga0099827_11633956All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia561Open in IMG/M
3300009111|Ga0115026_11223854All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300009147|Ga0114129_12356441All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes638Open in IMG/M
3300009156|Ga0111538_13506800All Organisms → cellular organisms → Bacteria → Terrabacteria group544Open in IMG/M
3300009815|Ga0105070_1002344All Organisms → cellular organisms → Bacteria2696Open in IMG/M
3300009840|Ga0126313_11339261All Organisms → cellular organisms → Bacteria → Terrabacteria group592Open in IMG/M
3300010041|Ga0126312_10588685All Organisms → cellular organisms → Bacteria → Terrabacteria group799Open in IMG/M
3300010044|Ga0126310_10662723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia786Open in IMG/M
3300010045|Ga0126311_10347366All Organisms → cellular organisms → Bacteria → Terrabacteria group1129Open in IMG/M
3300010333|Ga0134080_10493810All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300012041|Ga0137430_1253804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia501Open in IMG/M
3300012207|Ga0137381_11327965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia612Open in IMG/M
3300012356|Ga0137371_10060146All Organisms → cellular organisms → Bacteria2942Open in IMG/M
3300012960|Ga0164301_10168774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1360Open in IMG/M
3300012960|Ga0164301_11669336All Organisms → cellular organisms → Bacteria → Terrabacteria group531Open in IMG/M
3300012961|Ga0164302_11749053All Organisms → cellular organisms → Bacteria → Terrabacteria group523Open in IMG/M
3300012985|Ga0164308_11174213Not Available691Open in IMG/M
3300013297|Ga0157378_10930628All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia901Open in IMG/M
3300014154|Ga0134075_10229850All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia800Open in IMG/M
3300014271|Ga0075326_1054058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1072Open in IMG/M
3300015357|Ga0134072_10484945All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300015373|Ga0132257_100639503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1317Open in IMG/M
3300017966|Ga0187776_11112183All Organisms → cellular organisms → Bacteria → Terrabacteria group587Open in IMG/M
3300018032|Ga0187788_10222157All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300018055|Ga0184616_10074746All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1175Open in IMG/M
3300018060|Ga0187765_10053736All Organisms → cellular organisms → Bacteria2080Open in IMG/M
3300018061|Ga0184619_10069155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1557Open in IMG/M
3300018081|Ga0184625_10493978All Organisms → cellular organisms → Bacteria → Terrabacteria group619Open in IMG/M
3300018089|Ga0187774_10373900All Organisms → cellular organisms → Bacteria857Open in IMG/M
3300018422|Ga0190265_10970025All Organisms → cellular organisms → Bacteria → Terrabacteria group972Open in IMG/M
3300018466|Ga0190268_11207628All Organisms → cellular organisms → Bacteria → Terrabacteria group628Open in IMG/M
3300018466|Ga0190268_11313517All Organisms → cellular organisms → Bacteria → Terrabacteria group611Open in IMG/M
3300018466|Ga0190268_12065306All Organisms → cellular organisms → Bacteria → Terrabacteria group527Open in IMG/M
3300018469|Ga0190270_11428920All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia739Open in IMG/M
3300018469|Ga0190270_11995419All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300018469|Ga0190270_12647359All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria564Open in IMG/M
3300018482|Ga0066669_10535396All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1018Open in IMG/M
3300019377|Ga0190264_10816654All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia713Open in IMG/M
3300020016|Ga0193696_1131530All Organisms → cellular organisms → Bacteria → Terrabacteria group629Open in IMG/M
3300021066|Ga0196980_1052449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia681Open in IMG/M
3300021184|Ga0196959_10062643All Organisms → cellular organisms → Bacteria → Terrabacteria group794Open in IMG/M
3300021859|Ga0210334_10283517All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1022Open in IMG/M
3300022226|Ga0224512_10321721All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia772Open in IMG/M
3300025146|Ga0209322_10113652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1232Open in IMG/M
3300025159|Ga0209619_10117062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin1001574Open in IMG/M
3300025174|Ga0209324_10754011All Organisms → cellular organisms → Bacteria → Terrabacteria group547Open in IMG/M
3300025325|Ga0209341_10228863All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1548Open in IMG/M
3300025792|Ga0210143_1037863All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia847Open in IMG/M
3300025898|Ga0207692_10123156All Organisms → cellular organisms → Bacteria1454Open in IMG/M
3300025936|Ga0207670_10575324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia923Open in IMG/M
3300025942|Ga0207689_10861412All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia765Open in IMG/M
3300025942|Ga0207689_11365536All Organisms → cellular organisms → Bacteria → Proteobacteria594Open in IMG/M
3300026044|Ga0208287_1001147All Organisms → cellular organisms → Bacteria2946Open in IMG/M
3300026075|Ga0207708_10561840All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia963Open in IMG/M
3300026089|Ga0207648_10124172All Organisms → cellular organisms → Bacteria2270Open in IMG/M
3300026343|Ga0209159_1117923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1125Open in IMG/M
3300027713|Ga0209286_1297583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia563Open in IMG/M
(restricted) 3300027799|Ga0233416_10324246All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia531Open in IMG/M
3300027900|Ga0209253_10672575All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia750Open in IMG/M
(restricted) 3300028043|Ga0233417_10075121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1393Open in IMG/M
3300028578|Ga0272482_10267677All Organisms → cellular organisms → Bacteria → Terrabacteria group544Open in IMG/M
3300028711|Ga0307293_10101979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia910Open in IMG/M
3300028721|Ga0307315_10177936All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia653Open in IMG/M
3300028722|Ga0307319_10198970All Organisms → cellular organisms → Bacteria → Terrabacteria group655Open in IMG/M
3300028791|Ga0307290_10068228All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1291Open in IMG/M
3300028791|Ga0307290_10388730All Organisms → cellular organisms → Bacteria → Terrabacteria group510Open in IMG/M
3300028793|Ga0307299_10017799All Organisms → cellular organisms → Bacteria2537Open in IMG/M
3300028799|Ga0307284_10172036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia843Open in IMG/M
3300028811|Ga0307292_10443419All Organisms → cellular organisms → Bacteria → Terrabacteria group554Open in IMG/M
3300028884|Ga0307308_10305036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia763Open in IMG/M
3300028885|Ga0307304_10127927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1041Open in IMG/M
3300028885|Ga0307304_10527036All Organisms → cellular organisms → Bacteria → Terrabacteria group543Open in IMG/M
3300030006|Ga0299907_10193305All Organisms → cellular organisms → Bacteria1680Open in IMG/M
3300030010|Ga0302299_10423356All Organisms → cellular organisms → Bacteria → Terrabacteria group678Open in IMG/M
3300031114|Ga0308187_10273099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia623Open in IMG/M
3300031170|Ga0307498_10140922All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia790Open in IMG/M
3300031576|Ga0247727_10002250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria44509Open in IMG/M
3300031902|Ga0302322_103781938All Organisms → cellular organisms → Bacteria → Terrabacteria group517Open in IMG/M
3300031908|Ga0310900_10746048All Organisms → cellular organisms → Bacteria → Terrabacteria group788Open in IMG/M
3300031952|Ga0315294_10845181All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria782Open in IMG/M
3300032017|Ga0310899_10211614All Organisms → cellular organisms → Bacteria → Terrabacteria group864Open in IMG/M
3300032126|Ga0307415_100513243All Organisms → cellular organisms → Bacteria → Terrabacteria group1050Open in IMG/M
3300032163|Ga0315281_10110275All Organisms → cellular organisms → Bacteria3174Open in IMG/M
3300032516|Ga0315273_11042975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1043Open in IMG/M
3300032892|Ga0335081_11653673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia700Open in IMG/M
3300033407|Ga0214472_10089941All Organisms → cellular organisms → Bacteria3058Open in IMG/M
3300033407|Ga0214472_10477319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1160Open in IMG/M
3300033416|Ga0316622_103179615All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia520Open in IMG/M
3300033481|Ga0316600_10808545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia661Open in IMG/M
3300033550|Ga0247829_10452332All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1060Open in IMG/M
3300034176|Ga0364931_0258581All Organisms → cellular organisms → Bacteria → Terrabacteria group573Open in IMG/M
3300034177|Ga0364932_0405996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300034414|Ga0373905_072692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia553Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil22.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.56%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere4.76%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment3.97%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.17%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.17%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil3.17%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.38%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.38%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil2.38%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.38%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.38%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.59%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.59%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil1.59%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.59%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.59%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.59%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.59%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.79%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.79%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.79%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.79%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.79%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.79%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment0.79%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Soil0.79%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.79%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.79%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.79%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.79%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908032Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_allEnvironmentalOpen in IMG/M
3300000858Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002530Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_3EnvironmentalOpen in IMG/M
3300003203Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300003998Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2EnvironmentalOpen in IMG/M
3300004020Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300012041Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2EnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014271Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2EnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300018055Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coexEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300020016Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1EnvironmentalOpen in IMG/M
3300021066Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13CEnvironmentalOpen in IMG/M
3300021184Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20EnvironmentalOpen in IMG/M
3300021859Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022226Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_13EnvironmentalOpen in IMG/M
3300025146Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1EnvironmentalOpen in IMG/M
3300025159Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3EnvironmentalOpen in IMG/M
3300025174Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3EnvironmentalOpen in IMG/M
3300025325Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025792Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026044Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300027713Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027900Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)EnvironmentalOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028578Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030010Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033407Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175EnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300033481Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CTEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034176Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17EnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M
3300034414Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3EngineeredOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Perma_A_C_043432602124908032SoilAQTCMLADAAAAGVQAVLPKPGGFDQALRYLQQVRGVQGGVIVVGDRIGVAGAVEIAE
JGI10213J12805_1095177213300000858SoilTLGRGRGDGPDGLVVIAGTCMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVHGGVVVIGDRIGVSGRVEIAG*
JGI10214J12806_1212868713300000891SoilGGPDGLAVIADSCMAADAAAAGVQALLPKEFGFAQAVRYLKSVPGVRGGVFVVGERIGVAGNLEIAG*
JGI10214J12806_1265032813300000891SoilAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA*
JGI11615J12901_1179159213300000953SoilAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA*
JGI10216J12902_10359136033300000956SoilDAAAAGVQACLPKPDGFGMALHYLQKVPGVTGAVVVVGDRIGVAGGVEIAG*
JGIcombinedJ13530_10700758713300001213WetlandVGVSTTLGRGRVAVDGLAVLAESCMLAEAAAAGVQAILPKPDGFHLSLAYLQKVPGVIGGLVVIGDRIGVAGGVEIAA*
C688J18823_1084902523300001686SoilSCMLADAAAAGVQALLPKENGLASALLYLKKVRGVLGGVIVMGPRIGVAGSVEIAA*
C687J35503_1011526113300002530SoilAAAGVRAILPKPDGFHLALTYLKRVPGVTGGVLVQGERIGVAGGVEIAA*
JGI25406J46586_1017690523300003203Tabebuia Heterophylla RhizospherePDGLAVIADTCMAADAAAAGIQALLPKERGFAQAVRYLRDVPNVRGGVFVVGERIGVAGGVEIAG*
Ga0055472_1009132523300003998Natural And Restored WetlandsCMLADAAAAGVQALLPKEDGFKLALRYLQQVPGVRGGVVVVGEEIGVAGGVEIARP*
Ga0055440_1021433223300004020Natural And Restored WetlandsLAVLAESCMLADAAAAGVQAILPKENGFNGALAYLRQVKGVFGGVLLLGERIGVAGSVEIAA*
Ga0063454_10007480643300004081SoilMSVDRGRATVDGLAVLADSCMLADAAAAGVQALLPKENGLASALLYLKKVRGVLGGVIVMGPRIGVAGSVEIAA*
Ga0062590_10073136623300004157SoilGGPDGLAVIADSCMAADAAAAGVQALLPKKLGFAQAVRYLKTVPGVRGGVFVLGERIGLAGNLEIAG*
Ga0062590_10142692013300004157SoilGRGGGGPDGLAVIADSCMEADAAAAGVQALLPKKLGFAQAVRYLKTVPGVRGGVFVLGERIGVAGNLEIAG*
Ga0062592_10078947313300004480SoilLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA*
Ga0068997_1015708613300005204Natural And Restored WetlandsCMLADAAAAGVRAILPNERGFDGALAYLRQITGVHGGLVLVGERIGVVGSVEIAA*
Ga0066388_10166304813300005332Tropical Forest SoilCMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVRGGVVVVGDRIGVAGAVEIAG*
Ga0068869_10142577523300005334Miscanthus RhizosphereQSCMLADAAAAGVQACLNKPDGFGMALHYLQRVPGVSGGVVVVGDRIGVAGGVEIAG*
Ga0070689_10034875713300005340Switchgrass RhizosphereDAAAAGVQALLPKDDGFKLALRYLQQVPGVRGGVVVVGAEIGVAGGVEIARP*
Ga0070687_10056734913300005343Switchgrass RhizosphereCMLADAAAAGVQALLPKEDGFRKALQYLQQVPGVDGGVVVVGERIGVAGAVEIAH*
Ga0070692_1088064823300005345Corn, Switchgrass And Miscanthus RhizosphereAGVQAMLGKDEGFHAALAYLQQVPNVLGGVVVVGERIGVAGAVEIAA*
Ga0068867_10077463613300005459Miscanthus RhizosphereSCMLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA*
Ga0070699_10050866113300005518Corn, Switchgrass And Miscanthus RhizosphereDGLAVLAESCMLAGAAAAGVQAILPKENGLQGAMAYLKQVPGVIGGVVFLGERIGIAGGLELAA*
Ga0070696_10025329923300005546Corn, Switchgrass And Miscanthus RhizosphereGRGRGGEGPDGLAVIAASCMAADAAAAGVQAILPKEDGFHAALRYIERVPGVVGGVIVVGRKMGFAGKVEVAGA*
Ga0066905_10006406233300005713Tropical Forest SoilDVDGMAVLAESCMLAGAAAAGVQAILQREDGLQTALAYLKKVPGVIGGVVFLGERIGMAGGLELAA*
Ga0068866_1066587123300005718Miscanthus RhizosphereAVVAVSCMLADAAAAGVQACLPKQDGFGMALHYLQRVPGVRGGVVVSGDRIGVSGGVEIAG*
Ga0070715_1078338623300006163Corn, Switchgrass And Miscanthus RhizosphereADAAAAGVQACLPKPDGFGMALHYLQRVPGVMGAVVVVGERIGVAGGVEIAG*
Ga0066653_1013810413300006791SoilADAAAAGVQAILPKPDGFRTALDYLKRVPGVYGAVVILGERIGMMGGVEIAA*
Ga0073934_1083164923300006865Hot Spring SedimentAVVADSCMIADAAAAGVQAILPKKNGFVSALTYLKQVRGVLGGVVVVGDHVGLAGAVEIAA*
Ga0066710_10084960123300009012Grasslands SoilVATVGGGFGNFNTLGRGHAAVDGLAILATSCMLADAVAAGVQAILPKPDGFRLALSYLKRVPGVHGGVVLQGERIGMAGGVEIAA
Ga0099827_1163395613300009090Vadose Zone SoilESCTMADAAAAGVQAILPKPDGFHLALQYIRQVPGVTGAVVVLGERIGVAGGVEIAA*
Ga0115026_1122385423300009111WetlandAQTCMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVLGGVVVIGERIGVAGKVEIAG*
Ga0114129_1235644113300009147Populus RhizosphereMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVRGGVVVIGDRIGVAGAVEIAG*
Ga0111538_1350680013300009156Populus RhizosphereTGPDGLAVIADTCMAADAAAAGVQALLPKERGFAQAVRYLKGVPNVRGGVFVVGERIGLAGAVEIAG*
Ga0105070_100234433300009815Groundwater SandCMLADAAAAGVQALLSKRDGLHLALEYLKKVPGVSGGVVIIGEHIGMTGGVEIAA*
Ga0126313_1133926123300009840Serpentine SoilSVDRGRATVDGLAVLADSCMLADAAAAGVQALLPKENGLASALLYLKKVRGVLGGVIVMGQRIGVAGSVEIAA*
Ga0126312_1058868513300010041Serpentine SoilPDGLAVIATSCMLADAAAAGVQALLPKENGLASALLYLKKVRGVLGGVIVIGQRIGVAGSVEIAA*
Ga0126310_1066272313300010044Serpentine SoilAAGVQALLPKDDGFRKALQYLQQVQGVDGGVVVVGDRIGVAGGVEIAH*
Ga0126311_1034736613300010045Serpentine SoilDAAAAGVQALLPKENGLASALLYLKKVRGVLGGVIVMGPRIGVAGSVEIAA*
Ga0134080_1049381023300010333Grasslands SoilIAKSCMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVRGGVVVVGDRIGVAGAVEIAG*
Ga0137430_125380413300012041SoilESCMLADAVAAGVRAILPKENGFDGAMAYLGKIQGVFGAVVLLDGRIGVMGTVELAA*
Ga0137381_1132796513300012207Vadose Zone SoilCMLADATAAGVQALLPKPDGFTLALHYLRQVPGVQGGVVVLGDRIGVAGGVEIAA*
Ga0137371_1006014633300012356Vadose Zone SoilADSCMTADAAAAGVQAILPKSDGLRSALKYLERVRGVMGGVVVVGERLGFAGSVEVSG*
Ga0164301_1016877423300012960SoilMLADAAAAGVQACLPKPDGFGMALHYLQKVPGVMGAVIVVGERIGVAGGVEIAG*
Ga0164301_1166933623300012960SoilADAAAAGVQACLPKPDGFGMALHYLPRRPGATGAVVVVGERIGVAGGVELAG*
Ga0164302_1174905313300012961SoilAAAAGVQACLPKPDGFGMALHYLQRVPGVTGAVVVVGERIGVAGGVEIAG*
Ga0164308_1117421323300012985SoilDAAAAGVQACLPKPDGFGMALHYLQKVPGVMGAVVVVGERIGVAGGVEIAG*
Ga0157378_1093062813300013297Miscanthus RhizosphereDAAAAGGQAILPKENGFASALTYLRKVPGVLGGLVVVGERIGVAGGVEIAA*
Ga0134075_1022985013300014154Grasslands SoilDAAAAGVQAILPKPDGFRTALDYLKRVPGVYGAVVILGERIGMMGGVEIAA*
Ga0075326_105405823300014271Natural And Restored WetlandsGGGGPDGLAVIADTCMLADAAAAGVQAVLGKPGGFHRALEYLREVPGVHGGVVVTGLDIGVAGGVEIAA*
Ga0134072_1048494523300015357Grasslands SoilMAADAAAAGVQAILPKPNGFKTALKYLERVPEVTGGVIVVGDHLGFAGRVEVA*
Ga0132257_10063950313300015373Arabidopsis RhizosphereGLAVLATSCMLADAAAAGVQALLPQEDGFKLALKYLQRVPGVRGGVVVLGEEIGVAGGVEIARP*
Ga0187776_1111218323300017966Tropical PeatlandIADSCMRADAAAAGVQALLSKEDGFKEALRYLQHVRGVQGGVVVVGEQIGVAGGVEIARS
Ga0187788_1022215713300018032Tropical PeatlandSGPDGLAVIADSCMRADAAAAGVQALLSKEDGFKEALRYLQHVRGVQGGVVVVGEQIGVAGGVEIARSA
Ga0184616_1007474623300018055Groundwater SedimentQPRRGGVGIATGTGRGKAALDGLAVLADSCMLADAAAAGVQAIVPKADGFHLALAYLQKVPGVIGGVVISGDRIGVAGGVEIAA
Ga0187765_1005373623300018060Tropical PeatlandLAVIAETCMLADAAAAGVQAVLSKPDGFGMALRYLQAVPKVRGGVVVLGATIGVAGAVEIAG
Ga0184619_1006915513300018061Groundwater SedimentAAAGVQALLPKDDGFKLALQYLRQVPGVRGGVVVVGERIGVAGGVEIAQS
Ga0184625_1048813823300018081Groundwater SedimentGRSEVDGLAVLAESCMLAGAAAAGVQAILTKENGLHGALTYLKQVTGVIGGGVFLGERIGMAGGLELAA
Ga0184625_1049397813300018081Groundwater SedimentLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVLGDRIGVAGAVEIAA
Ga0187774_1037390013300018089Tropical PeatlandTTLGRGRGHSGPDGLAVIADSCMRADAAAAGVQALLSKEDGFKEALRYLQHVRGVQGGVVVVGEQIGVAGGVEIAKSA
Ga0190265_1097002523300018422SoilGRGRGGGGPDGLAVIADSCMAADAAAAGIQALLPKEFGFAQAVRYLKSVPGVRGGVFVVGERIGVAGNLEIAG
Ga0190268_1120762823300018466SoilAGVQALLPKDNGLASALLYLKKVRGVLGGVVVVGQRIGVAGGVELAA
Ga0190268_1131351713300018466SoilAAGVQALLPKEFGFAQAVRYLKGVPGVRGGVFVVGERIGVAGSVEIAG
Ga0190268_1206530623300018466SoilAAAAGVQALLGKAGGLAQALQYLREVPGVHGGVIATGVDIGLSGGVEIAA
Ga0190270_1142892023300018469SoilAAGVQAVLGKPGGFLQALQYLRQVPGVHGGVVVAGVEIGVAGAVEIAA
Ga0190270_1199541923300018469SoilGGPDGLAVIADSCMAADAAAAGVQALLPKEFGFAQAVRYLKGVPGVRGGVFVVGERIGLAGNVEIAG
Ga0190270_1264735913300018469SoilDGLAVIAGTCMLADAAAAGVQAMLGKDEGFHAALEYLQQVPNVLGGVVVVGERIGVAGAVEIAA
Ga0066669_1053539613300018482Grasslands SoilRSCMLADAAAAGGQACLLKPEGFGMALHYLQRVPGVRGGVVVVGERIGVAGAVEIAG
Ga0190264_1081665413300019377SoilAAGVQAVLGKPGGFLQALQYLRQVPGVHGGVVVAGAEIGVAGAVEIAA
Ga0193696_113153023300020016SoilGRGGRGPDGLAVIAQSCMLAAAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA
Ga0196980_105244923300021066SoilVQALLPKDNGLASALLYLKKVRGVLGGVVVVGQRIGVAGGVELAA
Ga0196959_1006264323300021184SoilIADSCALADAAAAGVQALLPKDNGLASALLYLKKVRGVLGGVVVVGQRIGVAGGVELAA
Ga0210334_1028351713300021859EstuarineCMLADAAAAGVQAVLGKPDGFHLALQYLRHVPGVHGGVVVTGVEIGVAGGVEIAE
Ga0224512_1032172113300022226SedimentDAAAAGVKAILAKPNGFRLALTYLRKVPGVFGGVILQGQQIGVAGGVEIAA
Ga0209322_1011365213300025146SoilMLASPALEIIAAGVRAILPKPDGFHLALTYLKRVPGVTGGVLVQGERIGVAGGVEIAA
Ga0209619_1011706223300025159SoilARRAPGADGWAVLATSTMLAEAATAGLQALLPKPDGFRSALAYLQKVPGVLGGLVVSGERIGVAGGVEIAA
Ga0209324_1075401113300025174SoilAATAGLQALLPKPDGLRTALAYLQRVPGVLGGVVVSGERIGVAGGVEIAA
Ga0209341_1022886323300025325SoilAVLADSCMLADAAAAGVQAILPKENGLNGALAYLGQVRGVLGGVVLVGERIGVAGAVEIA
Ga0210143_103786323300025792Natural And Restored WetlandsCMLADAAAAGVQALLPKEDGFKLALRYLQQVPGVRGGVVVVGEEIGVAGGVEIARP
Ga0207692_1012315623300025898Corn, Switchgrass And Miscanthus RhizosphereRSCMLADAAAAGVQACLPKPDGFGMALHYLQKVPGVMGAVVVVGERIGVAGGVEIAG
Ga0207670_1057532413300025936Switchgrass RhizosphereDAAAAGVQALLPKDDGFKLALRYLQQVPGVRGGVVVVGAEIGVAGGVEIARP
Ga0207689_1086141213300025942Miscanthus RhizosphereQSCMLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA
Ga0207689_1136553623300025942Miscanthus RhizosphereVIAGTCMLADAAAAGVQAMLGKDEGFHAALAYLQQVPNVLGGVVVVGERIGVAGAVEIAA
Ga0208287_100114733300026044Natural And Restored WetlandsDTCMLADAAAAGVQAVLGKPGGFHRALEYLREVPGVHGGVVVTGLDIGVAGGVEIAA
Ga0207708_1056184023300026075Corn, Switchgrass And Miscanthus RhizosphereCMLADAAAAGVQALLPKEDGFKLALKYLQQVPGVRGGVVVVGSEIGVAGGVEIARP
Ga0207648_1012417213300026089Miscanthus RhizosphereSCMLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA
Ga0209159_111792313300026343SoilAHSCMLADAAAAGVQACLLKPEGFGMALHYLQRVPGVRGGVVVVGERIGVAGAVEIAG
Ga0209286_129758323300027713Freshwater SedimentTGVGVATVLGQGRVPIDGLAVVAESCMLADAAAAGVQAIVPKPDGLRLALIYLQKVPGVRGGVVVQGERIGVAGAVEIAA
(restricted) Ga0233416_1032424613300027799SedimentLAEAAAAGVQAILPKERGFNGALAYLREVRGVHGGVVLVGERIGVAGSVEIAA
Ga0209253_1067257523300027900Freshwater Lake SedimentLGRGKAEVDGLAVLAESCMLAEAAAAGVQAILPKPDGFHLALTYLRKVPGVLGGVVIQGDRIGVAGGVEIAA
(restricted) Ga0233417_1007512113300028043SedimentVVASSCMLADAAAAGVQAILPKPDGLRLALTYLRKVRGVSGGVVVRGEQIGVAGAVEIAA
Ga0272482_1026767723300028578SoilRGGGGPDGLAVIADSCMAADAAAAGVQALLPKDFGFAQAVRYLKGVPGVRGGVFVVGERIGVAGNLEIAG
Ga0307293_1010197923300028711SoilLANSCMLADAAAAGVQAILPKPDGFRTALDYLKKVPGIYGAVVVLGERIGMMGGVEIAA
Ga0307307_1031254523300028718SoilLADAVAAGVQAILPKPDGFRLALSYLKRVPGVHGGVVLQGERIGMAGGVEIAA
Ga0307315_1017793613300028721SoilQSCMLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVLGDRIGVAGAVEIAA
Ga0307319_1019897023300028722SoilGLAVIADSCMEADAAAAGVQALLPKKLGFAQAVRYLQSVPGVRGGVFVVGERIGVAGNLEIAG
Ga0307290_1006822823300028791SoilDAAAAGVQALLPKEDGFKLALQYLQQVPGVRGGVVVVGERIGVAGGVEIAQS
Ga0307290_1038873023300028791SoilAQSCMLADAAAAGVQACLAKPDGFGMALHYLQQVPGVRGGVVVVGDRIGVAGAVEIAA
Ga0307299_1001779933300028793SoilCMSADAAAAGVQALLPKKLGFAQAVRYLRTVPGVRGGVFVVGERIGVAGNLEIAG
Ga0307284_1017203613300028799SoilGHASVDGLAILATSCMLADAVAAGVQAILPKPDGFRLALSYLKRVPGVHGGVVLQGERIGMAGGVEIAA
Ga0307292_1044341913300028811SoilPDGLAVIADSCMSADAAAAGVQALLPKKLGFAQAVRYLRTVPGVRGGVFVMGERIGVAGNLEIAG
Ga0307308_1030503623300028884SoilPSAVAAAGVQACLLKPEGFGMALHYLQQVPGVRGGVVVVGERIGVAGAVEIAG
Ga0307304_1012792723300028885SoilGVGISTTLGRGHAAVDGLAILATSCMLADAVAAGVQAILPKPDGFRLALSYLKRVPGVHGGVVLQGERIGMAGGVEIAA
Ga0307304_1052703613300028885SoilCMLADAAAAGVQAMLGKDEGFHAALEYLQQVPNVLGGVVVVGERIGVAGAVEIAA
Ga0299907_1019330523300030006SoilRGRGGGGPDGLAVIADSCMAADAAAAGVQALLPKEFGFAQAVRYLKGVPGVRGGVFVVGERIGVAGNLEIAG
Ga0302299_1042335623300030010FenAAAGVQAVLGKPDGFGMALRYLQQVPSVLGGVVVVGDRIGVAGGVEIA
Ga0308187_1027309913300031114SoilGSAAAAGVQAILPKPDGFRTALDYLKKVPGIYGAVVVLGERIGMMGGVEIAA
Ga0307498_1014092213300031170SoilAGVQACLPKPDGFGMALHYLQKVPGVMGAVVVVGERIGVAGGVEIAG
Ga0247727_1000225013300031576BiofilmAVIAQTCMLADAAAAGVQACLPKPDGFGMALHYLQRVPGVMGGVVVVGERIGVAGAVEIA
Ga0302322_10378193823300031902FenAAGVQAVLGKPDGFGMALRYLQQVPSVLGGVVVVGDRIGVAGGVEIA
Ga0310900_1074604813300031908SoilDGLAAVAVSCMLADAAAAGVQACLPKQDGFGMALHYLQRVPGVRGGVVVSGDRIGVSGGVEIAG
Ga0315294_1084518113300031952SedimentRIAVDGLALIAESCMLADAAAAGVQAILPKDDGFRLALAYLKRVPGVRGGVVVQGDRIGVVGGVEISA
Ga0310899_1021161413300032017SoilAAGVQALLPKERGFAQAVRYLKGVPNVRGGVFVVGERIGLAGAVEIAG
Ga0307415_10051324323300032126RhizosphereGLAVIADTCMAADAAAAGVQALLPKERGFAQAVRYLKGVPGVRGGVFVVGERIGLAGRLEIAG
Ga0315281_1011027513300032163SedimentTCMLADAAAAGVQAILPKSGGFDQALRYLQQVRGVQGGVIVVGDRIGVAGAVEIAE
Ga0315273_1104297523300032516SedimentTTLGRGHAVVDGLAVLATSCMLADAAAAGVQAILPKPDGFRLALSYLKRVPGVYGGVVLQGERIGMAGGVEIAA
Ga0335081_1165367323300032892SoilIADSCMLADAAAAGVQAILPKEDGFKLALQYLQRVPGVRGGVFVVGQQIGVAGGLEIAQS
Ga0214472_1008994113300033407SoilAWGAAAAAAAAGVQAILPKPDGFGMALHYLQRVPGVRGAIVVLGDRIGVSGALEIAG
Ga0214472_1047731913300033407SoilAVIAESCMLADAAAAGVQAIVPKEHGFAGALTYLKAVPGVVGGVVMVGERIGVAGGVEIV
Ga0316622_10317961513300033416SoilVATTLGQGSQLDGLAVLAESCMLADAAAAGVHAIVPKPDGFHLALTYLRKVPGVIGGIVVQGDRIGVAGGVEIAA
Ga0316600_1080854513300033481SoilESCMLADAAAAGVQAILPKQDGFRLALTYLKKVPGVRGGVVVQGARIGVAGGVEIAA
Ga0247829_1045233223300033550SoilGGPDGLAVIAGTCMLADAAAAGVQAMLGKDEGFHAALEYLQQVPNVVGGVVVVGERIGVAGAVEIAA
Ga0364931_0258581_330_5723300034176SedimentPAGFGVATSTPGGGGPDGLAVIAKTSMLAASATAGVQALLGKPNGLHSALRYLERVPGVFGGVVIEGERIGVAGAVELAS
Ga0364932_0405996_227_4513300034177SedimentMTIGRGHAVVDGLAILADSCMVADAAAAGVQAILPKENGLRSALAYLKQVRGVLGGLVVIGDRIGVAGGVEIAA
Ga0373905_072692_38_2383300034414Sediment SlurryVVDGLAVLASSCMLADATAAGVQAILSKRDGFRLALDYVKNVPGVHGGLVVLGDRIGLTGNVEIAA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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