NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F067238

Metagenome / Metatranscriptome Family F067238

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F067238
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 47 residues
Representative Sequence SSHRKLLSSKAMVVSVAERRDKIPAGTVERGERKRTAAEVSKAD
Number of Associated Samples 111
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 18.55 %
% of genes near scaffold ends (potentially truncated) 70.63 %
% of genes from short scaffolds (< 2000 bps) 86.51 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (81.746 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil
(9.524 % of family members)
Environment Ontology (ENVO) Unclassified
(24.603 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.937 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.18
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF00078RVT_1 13.49
PF08388GIIM 7.14
PF02566OsmC 2.38
PF02371Transposase_20 2.38
PF00202Aminotran_3 1.59
PF13185GAF_2 1.59
PF13408Zn_ribbon_recom 0.79
PF03401TctC 0.79
PF00106adh_short 0.79
PF00891Methyltransf_2 0.79
PF00497SBP_bac_3 0.79
PF13458Peripla_BP_6 0.79
PF14833NAD_binding_11 0.79
PF13602ADH_zinc_N_2 0.79
PF01209Ubie_methyltran 0.79
PF00211Guanylate_cyc 0.79
PF01048PNP_UDP_1 0.79
PF00589Phage_integrase 0.79
PF00144Beta-lactamase 0.79
PF00248Aldo_ket_red 0.79
PF00672HAMP 0.79
PF01135PCMT 0.79
PF03721UDPG_MGDP_dh_N 0.79
PF02735Ku 0.79
PF13751DDE_Tnp_1_6 0.79
PF02861Clp_N 0.79
PF07690MFS_1 0.79
PF09351DUF1993 0.79
PF04545Sigma70_r4 0.79
PF01464SLT 0.79
PF02733Dak1 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 2.38
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 2.38
COG3547TransposaseMobilome: prophages, transposons [X] 2.38
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 1.59
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.79
COG0542ATP-dependent Clp protease, ATP-binding subunit ClpAPosttranslational modification, protein turnover, chaperones [O] 0.79
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.79
COG0775Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnBNucleotide transport and metabolism [F] 0.79
COG0813Purine-nucleoside phosphorylaseNucleotide transport and metabolism [F] 0.79
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.79
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 0.79
COG1273Non-homologous end joining protein Ku, dsDNA break repairReplication, recombination and repair [L] 0.79
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.79
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.79
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 0.79
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.79
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.79
COG2367Beta-lactamase class ADefense mechanisms [V] 0.79
COG2376Dihydroxyacetone kinaseCarbohydrate transport and metabolism [G] 0.79
COG2518Protein-L-isoaspartate O-methyltransferasePosttranslational modification, protein turnover, chaperones [O] 0.79
COG2519tRNA A58 N-methylase Trm61Translation, ribosomal structure and biogenesis [J] 0.79
COG2820Uridine phosphorylaseNucleotide transport and metabolism [F] 0.79
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 0.79
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 0.79

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms81.75 %
UnclassifiedrootN/A18.25 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_17093106All Organisms → cellular organisms → Bacteria → Proteobacteria1155Open in IMG/M
2170459002|FZY7DQ102JT4B1All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium544Open in IMG/M
3300000651|AP72_2010_repI_A10DRAFT_1041636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium598Open in IMG/M
3300000705|JGI12455J11871_104548All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium523Open in IMG/M
3300000715|JGI12409J11926_105142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium519Open in IMG/M
3300000837|AP72_2010_repI_A100DRAFT_1007719Not Available1522Open in IMG/M
3300001179|JGI12660J13575_103630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium514Open in IMG/M
3300001407|JGI20192J14887_1003436All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2265Open in IMG/M
3300001593|JGI12635J15846_10371474All Organisms → cellular organisms → Bacteria → Proteobacteria871Open in IMG/M
3300001620|JGI20266J16349_10422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium529Open in IMG/M
3300001622|JGI20252J16333_100351Not Available949Open in IMG/M
3300001636|JGI20236J16297_101475All Organisms → cellular organisms → Bacteria → Proteobacteria648Open in IMG/M
3300001641|JGI20238J16299_100484Not Available1203Open in IMG/M
3300001645|JGI20270J16353_100458All Organisms → cellular organisms → Bacteria → Proteobacteria946Open in IMG/M
3300002245|JGIcombinedJ26739_100376664Not Available1299Open in IMG/M
3300003224|JGI26344J46810_1001841Not Available1454Open in IMG/M
3300004067|Ga0055485_10024573Not Available1203Open in IMG/M
3300004071|Ga0055486_10006383Not Available1623Open in IMG/M
3300004465|Ga0068944_1143903All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium512Open in IMG/M
3300004468|Ga0068977_1282928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium524Open in IMG/M
3300004471|Ga0068965_1295548All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii533Open in IMG/M
3300004618|Ga0068963_1407803All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300004633|Ga0066395_10086963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1477Open in IMG/M
3300004633|Ga0066395_10611606Not Available639Open in IMG/M
3300004633|Ga0066395_10739661All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300005173|Ga0066822_1003393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales829Open in IMG/M
3300005332|Ga0066388_103403689All Organisms → cellular organisms → Bacteria → Proteobacteria812Open in IMG/M
3300005332|Ga0066388_104545270All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria706Open in IMG/M
3300005332|Ga0066388_104598723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii702Open in IMG/M
3300005332|Ga0066388_106926557All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium570Open in IMG/M
3300005334|Ga0068869_100183335All Organisms → cellular organisms → Bacteria → Proteobacteria1642Open in IMG/M
3300005337|Ga0070682_100171148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1509Open in IMG/M
3300005347|Ga0070668_100497626All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1055Open in IMG/M
3300005356|Ga0070674_101824708All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales552Open in IMG/M
3300005435|Ga0070714_100325308All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1439Open in IMG/M
3300005437|Ga0070710_10441216All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300005439|Ga0070711_100650523All Organisms → cellular organisms → Bacteria → Proteobacteria884Open in IMG/M
3300005439|Ga0070711_101203011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium655Open in IMG/M
3300005439|Ga0070711_101327753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales624Open in IMG/M
3300005445|Ga0070708_100888768All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales837Open in IMG/M
3300005468|Ga0070707_100662496All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300005468|Ga0070707_101095223All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales762Open in IMG/M
3300005536|Ga0070697_100964097All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei758Open in IMG/M
3300005544|Ga0070686_100019878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3967Open in IMG/M
3300005554|Ga0066661_10151345All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1419Open in IMG/M
3300005556|Ga0066707_10469590All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300005561|Ga0066699_10404702Not Available976Open in IMG/M
3300005602|Ga0070762_10136123All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1457Open in IMG/M
3300005713|Ga0066905_100150212All Organisms → cellular organisms → Bacteria → Proteobacteria1676Open in IMG/M
3300005719|Ga0068861_100148913Not Available1918Open in IMG/M
3300005764|Ga0066903_102298125All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1041Open in IMG/M
3300005980|Ga0066798_10025509All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1993Open in IMG/M
3300006028|Ga0070717_10521088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1075Open in IMG/M
3300006041|Ga0075023_100427845All Organisms → cellular organisms → Bacteria → Proteobacteria579Open in IMG/M
3300006046|Ga0066652_100157329All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1912Open in IMG/M
3300006052|Ga0075029_100157676Not Available1398Open in IMG/M
3300006102|Ga0075015_100044354All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2080Open in IMG/M
3300006102|Ga0075015_100201960All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1059Open in IMG/M
3300006102|Ga0075015_100836720All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium555Open in IMG/M
3300006354|Ga0075021_10095325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1763Open in IMG/M
3300006578|Ga0074059_12066856All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium682Open in IMG/M
3300006800|Ga0066660_11402522Not Available547Open in IMG/M
3300006845|Ga0075421_101239441Not Available829Open in IMG/M
3300006846|Ga0075430_100088595All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2590Open in IMG/M
3300006880|Ga0075429_100160545All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1968Open in IMG/M
3300006893|Ga0073928_11069744All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium547Open in IMG/M
3300006904|Ga0075424_102151530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium587Open in IMG/M
3300007076|Ga0075435_101211616All Organisms → cellular organisms → Bacteria → Proteobacteria660Open in IMG/M
3300009518|Ga0116128_1110142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium807Open in IMG/M
3300009525|Ga0116220_10136851All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1048Open in IMG/M
3300009631|Ga0116115_1121937All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium664Open in IMG/M
3300009808|Ga0105071_1073144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium587Open in IMG/M
3300009817|Ga0105062_1076146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6641Open in IMG/M
3300010048|Ga0126373_11632313Not Available709Open in IMG/M
3300010366|Ga0126379_10555973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1228Open in IMG/M
3300010373|Ga0134128_12062143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales628Open in IMG/M
3300012209|Ga0137379_10249889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1686Open in IMG/M
3300012685|Ga0137397_11100856All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300012929|Ga0137404_10395046All Organisms → cellular organisms → Bacteria → Proteobacteria1218Open in IMG/M
3300012944|Ga0137410_10203341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1535Open in IMG/M
3300012971|Ga0126369_12634597All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300014165|Ga0181523_10077023All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2024Open in IMG/M
3300015051|Ga0137414_1192535All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6377Open in IMG/M
3300016319|Ga0182033_10395012All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1167Open in IMG/M
3300016371|Ga0182034_10160106All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1701Open in IMG/M
3300016387|Ga0182040_10047321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2651Open in IMG/M
3300016387|Ga0182040_10825331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium765Open in IMG/M
3300016422|Ga0182039_10513144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1037Open in IMG/M
3300017931|Ga0187877_1104583All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1179Open in IMG/M
3300017937|Ga0187809_10092056Not Available1009Open in IMG/M
3300017972|Ga0187781_10045654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3015Open in IMG/M
3300017972|Ga0187781_10289481Not Available1162Open in IMG/M
3300017975|Ga0187782_10030880All Organisms → cellular organisms → Bacteria → Proteobacteria3893Open in IMG/M
3300018058|Ga0187766_10435987All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium872Open in IMG/M
3300019786|Ga0182025_1019645All Organisms → cellular organisms → Bacteria1092Open in IMG/M
3300019786|Ga0182025_1208483All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2272Open in IMG/M
3300020579|Ga0210407_10792575All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales731Open in IMG/M
3300021168|Ga0210406_11309477All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium521Open in IMG/M
3300021404|Ga0210389_11529222All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria507Open in IMG/M
3300021420|Ga0210394_11772214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium515Open in IMG/M
3300021475|Ga0210392_10361440Not Available1052Open in IMG/M
3300021476|Ga0187846_10283118All Organisms → cellular organisms → Bacteria → Proteobacteria686Open in IMG/M
3300021560|Ga0126371_13427595All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei535Open in IMG/M
3300022727|Ga0224567_103908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium543Open in IMG/M
3300022731|Ga0224563_1018814All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium603Open in IMG/M
3300025905|Ga0207685_10219618Not Available903Open in IMG/M
3300025916|Ga0207663_11501374All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium543Open in IMG/M
3300026920|Ga0208575_1001622All Organisms → cellular organisms → Bacteria2723Open in IMG/M
3300027063|Ga0207762_1041923Not Available680Open in IMG/M
3300027842|Ga0209580_10649720All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium522Open in IMG/M
3300028536|Ga0137415_10111222All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2587Open in IMG/M
3300031719|Ga0306917_10281227All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1282Open in IMG/M
3300031724|Ga0318500_10396425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria686Open in IMG/M
3300031771|Ga0318546_10127527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1697Open in IMG/M
3300031879|Ga0306919_11149957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum591Open in IMG/M
3300031912|Ga0306921_10031754All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5895Open in IMG/M
3300031912|Ga0306921_10282410All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1944Open in IMG/M
3300031941|Ga0310912_10811633Not Available722Open in IMG/M
3300031942|Ga0310916_10268522All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1440Open in IMG/M
3300031945|Ga0310913_10096585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1993Open in IMG/M
3300031954|Ga0306926_10200086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2479Open in IMG/M
3300032076|Ga0306924_10021815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6812Open in IMG/M
3300032076|Ga0306924_11164430All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales836Open in IMG/M
3300032516|Ga0315273_10358834Not Available1970Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.52%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil9.52%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.35%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.76%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.76%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.76%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.17%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.17%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.59%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.59%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.59%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.59%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.59%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.59%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.79%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.79%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.79%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.79%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.79%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.79%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.79%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.79%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.79%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.79%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.79%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2170459002Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cmEnvironmentalOpen in IMG/M
3300000651Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10EnvironmentalOpen in IMG/M
3300000705Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55EnvironmentalOpen in IMG/M
3300000715Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73EnvironmentalOpen in IMG/M
3300000837Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100EnvironmentalOpen in IMG/M
3300001179Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3EnvironmentalOpen in IMG/M
3300001407Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001620Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032EnvironmentalOpen in IMG/M
3300001622Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018EnvironmentalOpen in IMG/M
3300001636Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002EnvironmentalOpen in IMG/M
3300001641Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004EnvironmentalOpen in IMG/M
3300001645Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003224Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3EnvironmentalOpen in IMG/M
3300004067Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004071Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004465Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004468Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004471Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004618Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005173Soil and rhizosphere microbial communities from Laval, Canada - mgHMAEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005980Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil leachate replicate DNA2013-203EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006578Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009631Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100EnvironmentalOpen in IMG/M
3300009808Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022727Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3EnvironmentalOpen in IMG/M
3300022731Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026920Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)EnvironmentalOpen in IMG/M
3300027063Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_005187902088090014SoilLISSHRKLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD
E1_021880602170459002Grass SoilHRKPLRSKAVVASVAETPGQDSGRHGRERRAKRTAAEVSKAV
AP72_2010_repI_A10DRAFT_104163633300000651Forest SoilQVSSHRKLLSSRAMVVSVAERRDLIPAGEVERGERKRTADDVSKAD*
JGI12455J11871_10454813300000705Tropical Forest SoilRKPLSSKAMVVNVAETWDMISAGMVERGERKQTAAEASKAD*
JGI12409J11926_10514223300000715Tropical Forest SoilKPLSSKAMVVNVAERWDMISAGMVERGERKQTAAEASKAD*
AP72_2010_repI_A100DRAFT_100771913300000837Forest SoilFGDQESIPSHRGLLRPKSVVVSVAETPGAIPAGTVERGERKQTAAEVSKAD*
JGI12660J13575_10363013300001179Forest SoilKAMVVNVAESRNKISAGMIERGERKRTADDVSKAD*
JGI20192J14887_100343613300001407Arctic Peat SoilMKEGPEVGNQVLISSHRKLLWSKATVVNVAEKPDKILAGMIERGERKRTAVEVSKAD*
JGI12635J15846_1037147413300001593Forest SoilFGFSNQVLISSHRKLLSLRAMVVALRKNRDLIPAGTVGRGERKQTVDDVSKAV*
JGI20266J16349_1042213300001620Forest SoilRKLLSSKAMVVNVAETRDMIPAGTIERGERKRTVDEVSKSD*
JGI20252J16333_10035123300001622Forest SoilRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
JGI20236J16297_10147513300001636Forest SoilSKAMVVSVAETAGMIPSGKVERGERKQTADDVSKSD*
JGI20238J16299_10048423300001641Forest SoilAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
JGI20270J16353_10045823300001645Forest SoilVQVSSHRELLSSRAMVVSVAERRDMIPAGKVERGERKRTVDEVSKAD*
JGIcombinedJ26739_10037666413300002245Forest SoilMKEAPEAGSQVLASSHRKLLRTKAAVVSVAERRDKIPAGKVERGERKRTVDEVSKAD*
JGI26344J46810_100184123300003224Bog Forest SoilIPSHRKPLWSKAVVVSVAERRDQIPAGTVERGERKRTAAEVSKAD*
Ga0055485_1002457313300004067Natural And Restored WetlandsSHRKLLRSKAVVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0055486_1000638323300004071Natural And Restored WetlandsSHRKLLRSKAVVVSVAETPGKIPAGTVERGERKRTAAEVSKAD*
Ga0068944_114390323300004465Peatlands SoilGNQVLISSHRKLLRSKATVVNVAEKRDVIPSGKVEGGERKRTAVEASKAD*
Ga0068977_128292823300004468Peatlands SoilGNQVLISSHRKLLWSKAMVVSVAETSDEIPAGKVERGERKRTVDEVSKAD*
Ga0068965_129554813300004471Peatlands SoilGNQVLISSHRKLLWSKATVVNVAEKRDVIPSGKVEGGERKRTAVEASKAD*
Ga0068963_140780313300004618Peatlands SoilMKEGPGFGSQVLIPSHRKLLRSNAVVVSVADAGTMILAGKVERGERKRTADEVSKAD*
Ga0066395_1008696313300004633Tropical Forest SoilFGFGNQVLIPSHRKLLRLNVVVVSVADAGTMIPAGKVERGERKQTVDEVSKAD*
Ga0066395_1061160623300004633Tropical Forest SoilNQVLISSHRKLLRSRAVVVSVAERRDEIPAGKVERGERKRTAAEVSKAV*
Ga0066395_1073966113300004633Tropical Forest SoilQVLISNHRKLLWSKARVVNVAEKAGQDPAGMVERGERKRTAAEVSKAA*
Ga0066822_100339323300005173SoilFEVGNQVLISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0066388_10340368923300005332Tropical Forest SoilQVLISSHRKLLWSKAPVVNVAEKLGTIPSGMVEGGERKRTAGEVSKAV*
Ga0066388_10454527023300005332Tropical Forest SoilEIGSQVQVSSHRKLLSSRAMVVSIAERRDLIPAGEVERGDRKRTVDEVSKAD*
Ga0066388_10459872313300005332Tropical Forest SoilEFGNQVLISSHRKLLRSKAVVVSVAERRDMIPAGMVERGERKQTAAEVSKSD*
Ga0066388_10692655713300005332Tropical Forest SoilQVLISSHRKLLSSKAMVVNVAETWDMIPAGTVERGERKRTVDELSKAV*
Ga0068869_10018333513300005334Miscanthus RhizosphereKLLRSRAVVVSVAAKLGKSPGGKVERGERKQTVDEVSKAD*
Ga0070682_10017114823300005337Corn RhizosphereFGNQVLISSHRKLLRSKAVVVSVAETPDEIPAGKVERGERKRTAAEVSKAD*
Ga0070668_10049762613300005347Switchgrass RhizosphereISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0070674_10182470823300005356Miscanthus RhizosphereISSHRKLLLSKAMVVSVAETAGHDPVGKVERGERKQTADDVSKSD*
Ga0070714_10032530833300005435Agricultural SoilMKEGPSGFGNQVLISSHCKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS*
Ga0070710_1044121613300005437Corn, Switchgrass And Miscanthus RhizosphereERLWSKATVVSVADVGAMIPAGKIERGERKRTASEASKAD*
Ga0070711_10065052333300005439Corn, Switchgrass And Miscanthus RhizosphereHRKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS*
Ga0070711_10120301113300005439Corn, Switchgrass And Miscanthus RhizosphereMKEDPEFGDQEPISSHRKLLRAKAVVVSVAETPGKISAGTVERGERKRTAAEVSK
Ga0070711_10132775313300005439Corn, Switchgrass And Miscanthus RhizosphereEFGNQVLISSHRKLLRSNVVVVSVAETPAMIPAGKVERGERKRTVDEVSKAV*
Ga0070708_10088876813300005445Corn, Switchgrass And Miscanthus RhizosphereVLISSHRKLLSSKAMVVSVAEKSGHPAGKVERGERKRTVDEVLKAD*
Ga0070707_10066249633300005468Corn, Switchgrass And Miscanthus RhizosphereMKEGPEAGSQVQVSSHRELLSSRAMVVSVAERRDLIPAGKVERGERKRTVDEVSKAD*
Ga0070707_10109522343300005468Corn, Switchgrass And Miscanthus RhizosphereRKLLSSKAMVVNVAEKRDMISAGKVERGERKRTADEVSKAD*
Ga0070697_10096409723300005536Corn, Switchgrass And Miscanthus RhizosphereSHRKLLSSKAMVVNVAETPGKIPAGEVERGERKQTVDEVSKAD*
Ga0070686_10001987863300005544Switchgrass RhizosphereFGNQVLISSHRKLLRSKAVVVSVAETPDEIPAGTVERGERKRTAAEVSKGD*
Ga0066661_1015134523300005554SoilMKEGPEVGNQVLISSRRKLLSSKAMVVNVAEKPDKISAGTVERGERKQTADEVSKAD*
Ga0066707_1046959023300005556SoilMKEGFEVGNQVLISSHRKLLLSKAMVVNVAEKRDKIPTGKVERGERKRTAAEVSKAD*
Ga0066699_1040470223300005561SoilPISSHRKLLWSKAMVVSVAERRDKILAGMVERGERKRTAAEVSKAD*
Ga0070762_1013612323300005602SoilMKEDPEVGNQVLISSHRKLLLSKAMVVSVAETAGEIPSGKVERGERKQTADDVSKAD*
Ga0066905_10015021213300005713Tropical Forest SoilLRSKAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD*
Ga0068861_10014891323300005719Switchgrass RhizosphereSHRKLLRSKAVVVSVAETPDEIPAGKVERGERKRTAAEVSKAD*
Ga0066903_10229812533300005764Tropical Forest SoilMKEGPLGGNQVLISSHRKLLRLNAVVVSVAETLTMIPAGKVERGERKQTVDEVSKAD*
Ga0066798_1002550923300005980SoilVPISSRRKLLSSKAMVVNVAETRDKIPTGTIERGERKRTAVEVSKSD*
Ga0070717_1052108823300006028Corn, Switchgrass And Miscanthus RhizosphereEFGDQEPISSHRKLLRAKAVVVSVAERRDKISAGTVERGERKRTAAEVSKAD*
Ga0075023_10042784523300006041WatershedsFGNQVLISSHRKLLSSKATVVNVAERRDMILAGMVERGERKRTAAEASKSD*
Ga0066652_10015732923300006046SoilISSHRKLLSSKAMVVSVAETPGQDSGGTVERGERKRTAAEVSKAD*
Ga0075029_10015767613300006052WatershedsSSHRKLLSSKAMVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0075015_10004435433300006102WatershedsQVLISSHRKLLWSKAVVVSVAETPGKIPAGKVERGERKRTAAEVSKAD*
Ga0075015_10020196033300006102WatershedsMKEGPGFGSQVLIPSHRKLLRSKAVVVSVADAGTMILAGKVERGERKRTADEVSKAD*
Ga0075015_10083672023300006102WatershedsVSSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD*
Ga0075021_1009532513300006354WatershedsRKLLSSKATVVNVAETRDMISAGMVERGERKRTAAEASKSD*
Ga0074059_1206685623300006578SoilEPISSHRKLLWSKAVVVSVAERRDEIPAGTVERGERKRTAAEVSKAD*
Ga0066660_1140252213300006800SoilLLSSRAMVVSVAETRDLIPAGKVERGERKRTANEVSKAD*
Ga0075421_10123944123300006845Populus RhizosphereSRCKLLRSKAVVVSVAVKVRTSSPAGEIEGGERKRTAAEASKAD*
Ga0075430_10008859543300006846Populus RhizosphereGDQEPISSHRKLLRSKAVVVSIAETPDEIPAGTVERDERKRTAAEVSKSD*
Ga0075429_10016054513300006880Populus RhizosphereMKEGPEVGSQVQVSSHRELLSSRAMVVSVAETRDLIPAGKVERGERKRTADDVSKAD*
Ga0073928_1106974413300006893Iron-Sulfur Acid SpringLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD*
Ga0075424_10215153023300006904Populus RhizosphereDQEPISSHRKLLRAKAVVVSVAERRDKIPAGTVERGERKRTAAEVSKAD*
Ga0075435_10121161623300007076Populus RhizosphereMKEGPSSFGDQEPISSHRKLLRPKAVVVSVAERRDKISAGTVERDERKRTAAEVSKAD*
Ga0116128_111014213300009518PeatlandVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0116220_1013685123300009525Peatlands SoilVLVSSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKSD*
Ga0116115_112193713300009631PeatlandVLVSSHRKLLWSKATAVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0105071_107314423300009808Groundwater SandMLVSVAEKPGQRFPAGTVEKGERKQTADEVSKAD*
Ga0105062_107614623300009817Groundwater SandVPIPSHRKLLRSKAVVVSVAENARTMIPAGMVERGERKRTAAEVSKAD*
Ga0126373_1163231313300010048Tropical Forest SoilVPFEAGSEVQVSSHRKLLLLRAMVVRLRKRRDLIPAGKVERSERKQTADEVSKAD*
Ga0126379_1055597333300010366Tropical Forest SoilCKLLRSKAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD*
Ga0134128_1206214313300010373Terrestrial SoilVLISSHRKLLSSKAMVVSVAETLGQDSGTGKVERGERKRTVDE
Ga0136449_10011007913300010379Peatlands SoilMVVNVAEKVGTMIPAGKIERGERKQTASEASKSD*
Ga0137379_1024988913300012209Vadose Zone SoilVLTLSHHKLLSSKAMVVTLRKRRDKIPAGKVERGERKQTVDEV
Ga0137397_1110085613300012685Vadose Zone SoilLISSHRKLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD*
Ga0137404_1039504623300012929Vadose Zone SoilMLLSSKAMVVNVAESRDMIPIGKVDRGERKRTAVEVSKAD*
Ga0137410_1020334133300012944Vadose Zone SoilLISSHRKLLSSKAMVVNVAESRDMIPIGKVDSGERKRTAVEVSKAD*
Ga0126369_1263459723300012971Tropical Forest SoilLLSPKATVVNVAEASGIGYRHGMVERGERKRTAAEASKAD*
Ga0181523_1007702323300014165BogPFEVGNQVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD*
Ga0137414_119253583300015051Vadose Zone SoilVLIPSHRKLLSFKSGMVVSVAETPDEIPAGKVERGERKRTVDEVSKAIGRCQTGG*
Ga0182033_1039501213300016319SoilSHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0182034_1016010623300016371SoilVQVSSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0182040_1004732113300016387SoilNQVLISSHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0182040_1082533113300016387SoilSKLLLSKATVVSVAERRDRIPAGTVERGERKRTADEVSKRD
Ga0182039_1051314413300016422SoilLLSSKAMVVSVAEKSGRDPVRHGMVERGERKRTTAEVSKSA
Ga0187877_110458323300017931PeatlandVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0187809_1009205613300017937Freshwater SedimentSSHRKLLWSKAMVVSVAENRNEIPAGKIERGERKQTVGEVSKAD
Ga0187854_1018122813300017938PeatlandWSKAMVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0187781_1004565433300017972Tropical PeatlandGVGNQVLISSHRKLLRSKAVVVSVAERRDEIPAGKVERGERKRTAAEVSKTD
Ga0187781_1028948133300017972Tropical PeatlandVLISSHRKLLWSKAMVVSVAESRDLIPSGKVERGERKRSIDEVS
Ga0187782_1003088033300017975Tropical PeatlandVLISSHRKLLRSKAVVVSVAERRDEIPAGKVERGERKRTAAEVSKTD
Ga0187766_1043598733300018058Tropical PeatlandISSHRKLLWSKTTVVNVAESRDMISPGTVERGERKRTAAEASK
Ga0182025_101964523300019786PermafrostVLVSSHRKLLWSKATVVSVAENRNEIPAGKIVRGERKRTVGEVSKA
Ga0182025_120848313300019786PermafrostMTLRGRQSVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0210407_1079257523300020579SoilLATCCATTFEVGNQVLISSHCKLLSSKAMVVSVAERREEIPAGTVERGERKQTVDEVSKALR
Ga0210406_1130947723300021168SoilRKLLRAKAVVVSVAETPGQDFGRHGRERRTAAEVSKAD
Ga0210389_1152922213300021404SoilVLISSHRKLLSSKATVVNVAEKSGWIWTGVIEGGERKRTADEVSKGD
Ga0210394_1177221413300021420SoilNQWLISSHCKLLSSKAMVVSVAERREEIPAGTVERGERKQTVDEVSKALR
Ga0210392_1036144013300021475SoilRGRQSGLISSHRKLLSSKAMVVNVAEKVGTGPTGKVERGERKRTAAEVSKSD
Ga0187846_1028311823300021476BiofilmVSSHRKLLSSRAMVVSVAETSDLIPAGKVERGERKRTADEVSKAD
Ga0126371_1342759513300021560Tropical Forest SoilKATVVNVAEASGIGFRHGMVERGERKRTAAEASKAD
Ga0224567_10390813300022727Plant LitterLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0224563_101881413300022731SoilFEVGNQVLVSSHRKLLWSKATVVSVAENRNEIPAGKIERGERKRTVGEVSKAD
Ga0207685_1021961823300025905Corn, Switchgrass And Miscanthus RhizosphereVLNSSHRKLLSSKAMVVSVAETPGQDSGTGKVERGERKRTVDEVSKAD
Ga0207663_1150137413300025916Corn, Switchgrass And Miscanthus RhizosphereHRKLLRSKAVVVNVAEKVGTTIPAGMVERGERKRTAAEASKFS
Ga0208575_100162253300026920SoilVLISSHRKLLSSKAMVGALRKRRDEIPAGKVERGERKQTVDEVSKAD
Ga0207762_104192313300027063Tropical Forest SoilSHRKLLWSKAMVVSVAESWDMIPSGKVERGERKRSIGEVSKAD
Ga0209580_1064972023300027842Surface SoilKLLRPKSVVVSVAERRDKIPAGTVERGERKQTADEVSKAD
Ga0137415_1011122223300028536Vadose Zone SoilVLISSHRKLLWSKATVVNVAEKSEQISVGVIERGERKRTAVEVSKAD
Ga0306917_1028122733300031719SoilVLISSPRKLLSSKATVVNVAEKRDMISTGVVEGGERKRTAAEVSKAD
Ga0318500_1039642523300031724SoilQVLISSHRKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0318546_1012752713300031771SoilVLISSYRKLLLSKAMVVNIAKTSGQDSDNERGERKQTAAEVSKAD
Ga0306919_1114995713300031879SoilVLIPSHRKPLRSKAVVVSVADTAGTMILAGTVEKGERKRTADEVSKGD
Ga0306921_1003175413300031912SoilRCKLLSSTAMVVSVAVNVGRISRAGKVERGERKRTVDELSKAV
Ga0306921_1028241013300031912SoilGDQEPISSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0310912_1081163323300031941SoilSHRKLLRSKAVVVSVADQDKILAGKVERGERKRTAAEVSKAD
Ga0310916_1026852213300031942SoilKLLRSKAVVVSVAETSGHDPPAGMVERGKRKRTAAEVSKSD
Ga0310913_1009658533300031945SoilKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0306926_1020008613300031954SoilVQVSSHRELLSSRAMVVSVAETSGLIPAGTVERGERKRTADEVSKAD
Ga0306924_1002181513300032076SoilQEPISSHRKLLRAKAVVVSVAETPGPDSAGTVERGERKRTAAEVSKAD
Ga0306924_1116443013300032076SoilKAVVVSVAVKLGPKVQDGKVERGERKRTAAEVSKSD
Ga0315273_1035883433300032516SedimentKLLLSKATVVNVAENAGPMSPAGMIERGERKRTVDEVSKAFR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.