Metagenome / Metatranscriptome Family F067498

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067498
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	75 residues
Representative Sequence	MNPAGLSLAADEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR
Number of Associated Samples	108
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	31.20 %
% of genes from short scaffolds (< 2000 bps)	77.60 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.400 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.600 % of family members)
Environment Ontology (ENVO)	Unclassified (31.200 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.400 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.65% β-sheet: 8.82% Coil/Unstructured: 73.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF00561	Abhydrolase_1	3.20
PF00106	adh_short	2.40
PF00873	ACR_tran	2.40
PF00005	ABC_tran	2.40
PF05988	DUF899	2.40
PF13561	adh_short_C2	1.60
PF13432	TPR_16	1.60
PF09335	SNARE_assoc	1.60
PF08327	AHSA1	1.60
PF05787	DUF839	1.60
PF12697	Abhydrolase_6	1.60
PF00072	Response_reg	0.80
PF13191	AAA_16	0.80
PF02878	PGM_PMM_I	0.80
PF04542	Sigma70_r2	0.80
PF01243	Putative_PNPOx	0.80
PF01451	LMWPc	0.80
PF14559	TPR_19	0.80
PF13414	TPR_11	0.80
PF01061	ABC2_membrane	0.80
PF13242	Hydrolase_like	0.80
PF11716	MDMPI_N	0.80
PF05448	AXE1	0.80
PF02518	HATPase_c	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	2.40
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.60
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.60
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.60
COG3211	Secreted phosphatase, PhoX family	General function prediction only [R]	1.60
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.80
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.80
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.80
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.80
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.80
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.80
COG3458	Cephalosporin-C deacetylase or related acetyl esterase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.80
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.40 %
Unclassified	root	N/A	17.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.40 %
Unclassified	root	N/A	17.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.40 %
Unclassified	root	N/A	17.60 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	36.80 %
Unclassified	root	N/A	17.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.40 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	36.80 %
Unclassified	root	N/A	17.60 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.20 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.60 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	36.80 %
Unclassified	root	N/A	17.60 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.00 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.60 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.60 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.80 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	36.80 %
Unclassified	root	N/A	17.60 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.60 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.60 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.80 %
Unclassified	root	N/A	17.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.60 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.80 %
Unclassified	root	N/A	17.60 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	1.60 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.80 %
Unclassified	root	N/A	17.60 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1.60 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	36.80 %
Unclassified	root	N/A	17.60 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1.60 %
Pseudomonas aeruginosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2193233	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300000956\|JGI10216J12902_104012814	Not Available	526	Open in IMG/M
3300002562\|JGI25382J37095_10142496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	791	Open in IMG/M
3300002908\|JGI25382J43887_10052423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2217	Open in IMG/M
3300005172\|Ga0066683_10283234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1030	Open in IMG/M
3300005186\|Ga0066676_10055476	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
3300005289\|Ga0065704_10703648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	560	Open in IMG/M
3300005295\|Ga0065707_10727393	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	628	Open in IMG/M
3300005336\|Ga0070680_100668322	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300005338\|Ga0068868_101588869	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005446\|Ga0066686_10335592	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1030	Open in IMG/M
3300005518\|Ga0070699_100354342	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300005549\|Ga0070704_100228731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1516	Open in IMG/M
3300005561\|Ga0066699_10508957	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	861	Open in IMG/M
3300005713\|Ga0066905_100561413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	960	Open in IMG/M
3300006034\|Ga0066656_10080774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1940	Open in IMG/M
3300006049\|Ga0075417_10019137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2704	Open in IMG/M
3300006844\|Ga0075428_100583196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1195	Open in IMG/M
3300006844\|Ga0075428_101946230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	610	Open in IMG/M
3300006845\|Ga0075421_101800515	Not Available	659	Open in IMG/M
3300006847\|Ga0075431_100835668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	893	Open in IMG/M
3300006852\|Ga0075433_10051896	All Organisms → cellular organisms → Bacteria → Proteobacteria	3573	Open in IMG/M
3300006854\|Ga0075425_100031642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5872	Open in IMG/M
3300006854\|Ga0075425_100152603	All Organisms → cellular organisms → Bacteria	2647	Open in IMG/M
3300006871\|Ga0075434_101972339	Not Available	589	Open in IMG/M
3300006914\|Ga0075436_100078368	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300006969\|Ga0075419_10325915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1040	Open in IMG/M
3300007255\|Ga0099791_10004888	All Organisms → cellular organisms → Bacteria	5514	Open in IMG/M
3300009012\|Ga0066710_100016712	All Organisms → cellular organisms → Bacteria → Proteobacteria	7878	Open in IMG/M
3300009038\|Ga0099829_10982825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	700	Open in IMG/M
3300009088\|Ga0099830_10007377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6501	Open in IMG/M
3300009089\|Ga0099828_10015209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5861	Open in IMG/M
3300009100\|Ga0075418_10425802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1421	Open in IMG/M
3300009137\|Ga0066709_100216568	All Organisms → cellular organisms → Bacteria	2531	Open in IMG/M
3300009146\|Ga0105091_10549268	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300009147\|Ga0114129_12077277	Not Available	686	Open in IMG/M
3300009147\|Ga0114129_12566123	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	608	Open in IMG/M
3300009162\|Ga0075423_10006192	All Organisms → cellular organisms → Bacteria → Proteobacteria	11226	Open in IMG/M
3300009814\|Ga0105082_1049581	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	707	Open in IMG/M
3300009820\|Ga0105085_1083453	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300009837\|Ga0105058_1043913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	990	Open in IMG/M
3300010029\|Ga0105074_1119439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300010119\|Ga0127452_1119494	Not Available	564	Open in IMG/M
3300010133\|Ga0127459_1096458	Not Available	577	Open in IMG/M
3300010140\|Ga0127456_1055979	Not Available	624	Open in IMG/M
3300010140\|Ga0127456_1102797	Not Available	553	Open in IMG/M
3300010304\|Ga0134088_10050477	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300010304\|Ga0134088_10492942	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300010359\|Ga0126376_13010518	Not Available	521	Open in IMG/M
3300010362\|Ga0126377_13598255	Not Available	501	Open in IMG/M
3300011269\|Ga0137392_10008178	All Organisms → cellular organisms → Bacteria	6802	Open in IMG/M
3300012096\|Ga0137389_10325822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1303	Open in IMG/M
3300012189\|Ga0137388_11459116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	622	Open in IMG/M
3300012202\|Ga0137363_10291072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	1338	Open in IMG/M
3300012202\|Ga0137363_11085021	Not Available	680	Open in IMG/M
3300012204\|Ga0137374_10337745	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300012205\|Ga0137362_10001712	All Organisms → cellular organisms → Bacteria	13825	Open in IMG/M
3300012205\|Ga0137362_11399566	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	585	Open in IMG/M
3300012206\|Ga0137380_10914416	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300012206\|Ga0137380_11342332	Not Available	600	Open in IMG/M
3300012207\|Ga0137381_10159073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1947	Open in IMG/M
3300012358\|Ga0137368_10316436	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300012361\|Ga0137360_11329818	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300012363\|Ga0137390_10025113	All Organisms → cellular organisms → Bacteria	5601	Open in IMG/M
3300012393\|Ga0134052_1317293	Not Available	538	Open in IMG/M
3300012396\|Ga0134057_1191571	Not Available	529	Open in IMG/M
3300012397\|Ga0134056_1109430	Not Available	632	Open in IMG/M
3300012399\|Ga0134061_1214227	Not Available	810	Open in IMG/M
3300012402\|Ga0134059_1030358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300012582\|Ga0137358_10770419	Not Available	641	Open in IMG/M
3300012582\|Ga0137358_10821105	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	616	Open in IMG/M
3300012918\|Ga0137396_10017701	All Organisms → cellular organisms → Bacteria → Proteobacteria	4511	Open in IMG/M
3300012922\|Ga0137394_10441191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300012922\|Ga0137394_11155702	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300012929\|Ga0137404_10167707	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300012929\|Ga0137404_10964191	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300012930\|Ga0137407_10031420	All Organisms → cellular organisms → Bacteria → Proteobacteria	4142	Open in IMG/M
3300012930\|Ga0137407_12307251	Not Available	514	Open in IMG/M
3300012957\|Ga0164303_10218074	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300012972\|Ga0134077_10044889	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1615	Open in IMG/M
3300012976\|Ga0134076_10093402	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1186	Open in IMG/M
3300014326\|Ga0157380_11103006	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300015241\|Ga0137418_10013048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7678	Open in IMG/M
3300017659\|Ga0134083_10136503	Not Available	986	Open in IMG/M
3300018052\|Ga0184638_1022995	All Organisms → cellular organisms → Bacteria → Proteobacteria	2217	Open in IMG/M
3300018053\|Ga0184626_10170576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	924	Open in IMG/M
3300018056\|Ga0184623_10251280	All Organisms → cellular organisms → Bacteria → Terrabacteria group	807	Open in IMG/M
3300018074\|Ga0184640_10059568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1597	Open in IMG/M
3300018075\|Ga0184632_10027746	All Organisms → cellular organisms → Bacteria → Proteobacteria	2411	Open in IMG/M
3300018075\|Ga0184632_10194345	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	894	Open in IMG/M
3300018076\|Ga0184609_10220405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	886	Open in IMG/M
3300018076\|Ga0184609_10277130	Not Available	785	Open in IMG/M
3300018078\|Ga0184612_10337588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300018079\|Ga0184627_10019002	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3354	Open in IMG/M
3300019362\|Ga0173479_10491657	Not Available	617	Open in IMG/M
3300019789\|Ga0137408_1238301	All Organisms → cellular organisms → Bacteria → Proteobacteria	3561	Open in IMG/M
3300021073\|Ga0210378_10178598	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300025917\|Ga0207660_10604830	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300025923\|Ga0207681_10454787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas aeruginosa	1042	Open in IMG/M
3300026296\|Ga0209235_1101339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1240	Open in IMG/M
3300026297\|Ga0209237_1028434	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3084	Open in IMG/M
3300026298\|Ga0209236_1143652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1020	Open in IMG/M
3300026298\|Ga0209236_1145754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1008	Open in IMG/M
3300026324\|Ga0209470_1184871	Not Available	896	Open in IMG/M
3300026354\|Ga0257180_1025401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300027490\|Ga0209899_1101802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300027577\|Ga0209874_1040926	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1234	Open in IMG/M
3300027655\|Ga0209388_1071267	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300027846\|Ga0209180_10037813	All Organisms → cellular organisms → Bacteria	2624	Open in IMG/M
3300027873\|Ga0209814_10026240	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2385	Open in IMG/M
3300027875\|Ga0209283_10023300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3815	Open in IMG/M
3300027909\|Ga0209382_10749870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1045	Open in IMG/M
3300027950\|Ga0209885_1044624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300027952\|Ga0209889_1005511	All Organisms → cellular organisms → Bacteria → Proteobacteria	3382	Open in IMG/M
3300027954\|Ga0209859_1028235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	951	Open in IMG/M
3300027961\|Ga0209853_1095612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	759	Open in IMG/M
3300031184\|Ga0307499_10342296	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031226\|Ga0307497_10439761	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300031720\|Ga0307469_10849865	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300031720\|Ga0307469_12370369	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300031720\|Ga0307469_12439498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300031740\|Ga0307468_100126420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300032180\|Ga0307471_101266659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	900	Open in IMG/M
3300032205\|Ga0307472_101235022	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300033412\|Ga0310810_10936772	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.20%
Host-Associated	Host-Associated	16.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.60%
Plants	Host-Associated → Plants	16.80%
Aquatic	Environmental → Aquatic	9.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.20%
Sediment	Environmental → Aquatic → Sediment	8.00%
Freshwater	Environmental → Aquatic → Freshwater	1.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.00%
Sand	Environmental → Terrestrial → Soil → Sand	8.00%
Loam	Environmental → Terrestrial → Soil → Loam	4.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.00%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.20%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.20%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.00%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.80%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010119	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012402	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027950	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_21932332	3300000033	Soil	MTAAGQKPISDEEDEAAPVTILDAXGRVLQVLPVAEFRRIHGVPERPTADKWRRRRERTKPSEIEEGVTAHPVSX*
JGI10216J12902_1040128141	3300000956	Soil	MNPTGRRLVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPSTPDSWRRRKERVKTREIEQGAAATLATR*
JGI25382J37095_101424961	3300002562	Grasslands Soil	MNPAGLNLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENV
JGI25382J43887_100524232	3300002908	Grasslands Soil	MNPAGLNLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR*
Ga0066683_102832341	3300005172	Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*SGK
Ga0066676_100554761	3300005186	Soil	MNPADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0065704_107036482	3300005289	Switchgrass Rhizosphere	MTAAGQKPISDEEDEAAPVTILDALGRVLQILPVAEFRRIHGVPERPTADKWRRRRERAKPSEIEEGVTAHPVS
Ga0065707_107273932	3300005295	Switchgrass Rhizosphere	MTAAGQKPISDEEDEAAPVTILDALGRVLQILPVAEFRRIHGVPERPTADKWRLRRERAKPSEIQEGVTAHPVSR*
Ga0070680_1006683221	3300005336	Corn Rhizosphere	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALVG*
Ga0068868_1015888691	3300005338	Miscanthus Rhizosphere	MSSAGRRPVADEESAAPVTILDGLGRVVRVIAAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALVG*
Ga0066686_103355922	3300005446	Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*SGKTPEAKARRPHLDGAA
Ga0070699_1003543421	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MHPAGLRLAAGEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKQREIEQGAIENVVPR*
Ga0070704_1002287312	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIAAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALVG*
Ga0066699_105089572	3300005561	Soil	MNVGLRPVTDDEEVAPVTILDGLGRVVRVVPAEEFRRIHGVPERPSPDNWRRRRDRVRPSEIAQGAIENAVPR*
Ga0066905_1005614131	3300005713	Tropical Forest Soil	PEGRKPVAEDENVAPVTILDGLGRVVRIVPAEEFRQIHGVPERAKTEPGRRKKAGVGTGNIEQGASEAVAPR*
Ga0066656_100807743	3300006034	Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0075417_100191373	3300006049	Populus Rhizosphere	MNPTGRRLVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPPTPDSWRRRKERVKTSEIEQGAAATLATR*
Ga0075428_1005831963	3300006844	Populus Rhizosphere	MTAAGQKPISDEEDEAAPVTILDALGRVLQVLPVAEFRRIHGVPERPTADKWRRRRERTKPSEIEEGVTAHPVSR*
Ga0075428_1019462302	3300006844	Populus Rhizosphere	MNPTGRRLVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPPTPDSWRRRKERVKTSEIEQG
Ga0075421_1018005153	3300006845	Populus Rhizosphere	MTAADQKPISDEEDEAAPVTILDALGRVIQVLPVAEFRRIHGVPERPTADKWRRRRERAKPSEIEEGVTAHPVSR*
Ga0075431_1008356682	3300006847	Populus Rhizosphere	MTAAGQKPISDEEDEAAPVTILDALGRVIQVLPVAEFRRIHGVPERPTADKWRRRRERAKPSEIEEGVTAHPVSR*
Ga0075433_100518963	3300006852	Populus Rhizosphere	MSSAGRRPVVDEESASPVTILDGLGRVIGVVPAEEFRRIHGVPERPKPDMWRRRRERAKPSENAEDATEPVLLG*
Ga0075425_1000316424	3300006854	Populus Rhizosphere	MSSAGRRPVVDEESASPVTILDGLGRVIGVVPAEEFRRIHGVPERPKPDMWRRRRERAKPSENAEDATEHVLLG*
Ga0075425_1001526032	3300006854	Populus Rhizosphere	MTAAGQKPIGDEEDAVAPVTILDGLGRVIQVLPVAEFRRIHGVPERPTVDKWRRRRERAKPSEIEEGVIAHPVSR*
Ga0075434_1019723392	3300006871	Populus Rhizosphere	MTAAGQKPIGDEEDAVAPVTILDGLGRVIQVLPVAEFRRIHGVPERPTVDKWRRRRERAKPSEIEKGVTAHPVSR*
Ga0075436_1000783683	3300006914	Populus Rhizosphere	MTAAGQKPIGDEEDAVAPVTILDGLGRVIQVLPVAEFRRIHGVPERPTVDKWRRRRERAKPSEIEEGVTAHPVSR*
Ga0075419_103259152	3300006969	Populus Rhizosphere	MNPTGRRFVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPPTPDSWRRRKERVKTSEIEQGAAATLATR*
Ga0099791_100048888	3300007255	Vadose Zone Soil	MNPAGLSLAADEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR*
Ga0066710_1000167124	3300009012	Grasslands Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVTGRPTTDIWRRRRERVKPSEIEQGAIENAVAR
Ga0099829_109828251	3300009038	Vadose Zone Soil	MNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKRSEIEQGAIENVVPR*
Ga0099830_100073773	3300009088	Vadose Zone Soil	MNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPG*
Ga0099828_100152091	3300009089	Vadose Zone Soil	STRKGEVSMNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR*
Ga0075418_104258022	3300009100	Populus Rhizosphere	NPTGRRLVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPPTPDSWRRRKERVKTSEIEQGAAATLATR*
Ga0066709_1002165684	3300009137	Grasslands Soil	ASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVTGRPTTDIWRRRRERVKPSEIEQGAIENAVAR*
Ga0105091_105492681	3300009146	Freshwater Sediment	AARAPEGDISMNPADRRRVSDEENVAPVTILDGLGRVLQIVPAAEFRRIHGVPERPRREHWRRGRRRAEPSEIAE*
Ga0114129_120772771	3300009147	Populus Rhizosphere	MHPKRQEHRNGGKSMTAAGQKPIGDEEDAVAPVTILDGLGRVIQVLPVAEFRRIHGVPERPTVDKWRRRRERAKPSEIEEGVTAHPVSR*
Ga0114129_125661232	3300009147	Populus Rhizosphere	MNPTGRRFVADEEAPAPVTILDGLGRVMHVIPAEEFRRIRGVPAPPTPDSWRRRKERVKASEIEQGAAATLATR*
Ga0075423_1000619215	3300009162	Populus Rhizosphere	MSSAFRRPVVDEESASPVTILDGLGRVIGVVPAEEFRRIHGVPERPKPDMWRRRRERAKPSENAEDATEPVLLG*
Ga0105082_10495812	3300009814	Groundwater Sand	MHPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTADNWRRRRERVKQREIEQDAIENVVPR*
Ga0105085_10834531	3300009820	Groundwater Sand	MHPAGLRLAADEEGAAPVSILDGLGRVVRIIPAEEFRRIHGVPERPTADNWRRRRERVKQREIEQDAIENVVP
Ga0105058_10439132	3300009837	Groundwater Sand	MNPAGLRLAANEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKQREIEQGAIENVVPR*
Ga0105074_11194391	3300010029	Groundwater Sand	GEVPMHPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTADNWRRRRERVKQREIEQDAIENVVPR*
Ga0127452_11194942	3300010119	Grasslands Soil	RDGRIKSGDSHRKGGVSMNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0127459_10964582	3300010133	Grasslands Soil	VSMNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0127456_10559791	3300010140	Grasslands Soil	SMNPADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0127456_11027971	3300010140	Grasslands Soil	GNSTRKGEVPMNPAGLRLAADEEGAAPVTILDGLGRVVRIVAAEEFRRIHGVPERPTTDNWRRRRERVKPREIERGAIENVVPR*
Ga0134088_100504771	3300010304	Grasslands Soil	GAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0134088_104929421	3300010304	Grasslands Soil	IESGNSIRKGEVPMNPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHRAPERPTTDNWRRRRERVKQREIEQGAIENVVPR*
Ga0126376_130105181	3300010359	Tropical Forest Soil	MNSASRRPIAEEEGPAPVTILDGLGRVMQVIPAEEFRRIHGLPTPPTPDSWRRRKERVKTGAIEQGAAEDVASR*
Ga0126377_135982552	3300010362	Tropical Forest Soil	MSAAGRRPVSDEEDAAPVTILDGLGRVIQILPVAEFRRIHGLPERPSADRWRRRRERAKPIEIEEGVPEHPVPS*
Ga0137392_100081785	3300011269	Vadose Zone Soil	MNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR*
Ga0137389_103258222	3300012096	Vadose Zone Soil	GAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKRSEIEQGAIENVVPR*
Ga0137388_114591161	3300012189	Vadose Zone Soil	MNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR*
Ga0137363_102910723	3300012202	Vadose Zone Soil	MDASKAQQHRKGETSMNPAGPRLVGDEEIAAPVTILDGLGRVIRIVPAEEFRRIHGVPERPTPDNWRRRRGRAKPSEIAEGATEHAVPR*
Ga0137363_110850212	3300012202	Vadose Zone Soil	MSSAGRRPIADEESVAPVTILDGLGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERA
Ga0137374_103377453	3300012204	Vadose Zone Soil	MNPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPGRPATENWRRRRERVKPSEIV*
Ga0137362_1000171214	3300012205	Vadose Zone Soil	MPAMDASKAQQHRKGETSMNPAGPRLVGDEEIAAPVTILDGLGRVIRIVPAEEFRRIHGVPERPTPDNWRRRRGRAKPSEIAEGATEHAVPR*
Ga0137362_113995661	3300012205	Vadose Zone Soil	MKPAGRGPVGDEENVAPVTILDGQGHVIRIVPVEEFRRIHGVPEPPTADKWRRRRERAKPSEI
Ga0137380_109144162	3300012206	Vadose Zone Soil	MNPADLRLAADEQGAAPVTILDGLGRVVRIVPAEEFRRTHGVPERPTREHWRRRKERVKPTEIEQGAIENVVQR*
Ga0137380_113423322	3300012206	Vadose Zone Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIANAVPR*
Ga0137381_101590733	3300012207	Vadose Zone Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0137368_103164363	3300012358	Vadose Zone Soil	ALDGLIESGNTPRKGEVSMNPDGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIV*
Ga0137360_113298182	3300012361	Vadose Zone Soil	MNPAGLSLASDEDGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR*
Ga0137390_100251132	3300012363	Vadose Zone Soil	MNPAGLSLAADEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR*
Ga0134052_13172931	3300012393	Grasslands Soil	RKGGVSMNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0134057_11915711	3300012396	Grasslands Soil	GRIESGNSTRKGEVPMNPAGLRLAADEEGAAPVTILDGLGRVVRIVAAEEFRRIHGVPERPTTDNWRRRRERVKPREIERGAIENVVPR*
Ga0134056_11094301	3300012397	Grasslands Soil	MNPAGLRLAADEEGAAPVTILDGLGRVVRIVAAEEFRRIHGVPERPTTDNWRRRRERVKPREIERGAIENVVPR*
Ga0134061_12142272	3300012399	Grasslands Soil	LAHRKGEASMNPADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRQIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR*
Ga0134059_10303581	3300012402	Grasslands Soil	PAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGAPERPTTDNWRRRRERVKQREIEQGAIENVVPR*
Ga0137358_107704192	3300012582	Vadose Zone Soil	MSSAGRRPIADEESVAPVTILDGLGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSED
Ga0137358_108211052	3300012582	Vadose Zone Soil	MNPGMRPVADDEEVAPVTILDGLGRVVRIVPAEEFRRLHGVPERPSPDNWRRRRERVKPSENAQGPIENAVPR*
Ga0137396_100177016	3300012918	Vadose Zone Soil	MNPGMRPVADDEDVAPVTILDGLGRVVRIVPAEEFRRLHGVPERPSPDNWRRRRERVKPSENAQGPIENAVPR*
Ga0137394_104411912	3300012922	Vadose Zone Soil	MNPGMRPVADDEDVAPVTILDGLGRVVRIVPAEEFRRLRGVPERPSPDTWRRRRERVKPSENAQGPIENAVPR*
Ga0137394_111557022	3300012922	Vadose Zone Soil	MSSAGRRPIADEESVAPVTILDGLGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERPKPSENAEDAIEHALVG*
Ga0137404_101677073	3300012929	Vadose Zone Soil	MPVMDASKAQQHRKGETSMNAADPRLVGDEEIAAPVTILDGLGRVIRIVPAEEFRRIHGVPERPTPDNWRRRRGRAKPSEIAEGATEHAVPR*
Ga0137404_109641911	3300012929	Vadose Zone Soil	MNPAGPSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR*
Ga0137407_100314204	3300012930	Vadose Zone Soil	MPVMDASKAQQHRKGETSMNAADPRLVGDEEIAAPVTILDGLGRVIRIVPAEEFRRIHGVPERPTPDNWRRRRGRAKPSEVAEAATEHAVPR*
Ga0137407_123072511	3300012930	Vadose Zone Soil	MSSAGRRPIADEESVAPVTILDGLGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIQHALVG*
Ga0164303_102180742	3300012957	Soil	MSSAGRKPVADEESVAPVTILDGMGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERPKPSENAEDATEDALVG*
Ga0134077_100448893	3300012972	Grasslands Soil	MNPADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIE
Ga0134076_100934021	3300012976	Grasslands Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKP
Ga0157380_111030061	3300014326	Switchgrass Rhizosphere	MSSAGRRPVADEESAAPVTILDGLGRVIQVVPAEEFRRVHGAPERPKPEMWRRRRERAKPSESAEDAIEHALVG*
Ga0137418_100130482	3300015241	Vadose Zone Soil	MNPGMRPVTDDEEVAPVTILDGLGRVVRIVPAEEFRRLHGVPERPSPDNWRRRRERVKPSENAQGPIENAVPR*
Ga0134083_101365031	3300017659	Grasslands Soil	MNPADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR
Ga0184638_10229957	3300018052	Groundwater Sediment	KSGDSTRKGEVSMNPADLRLASDEDGAAPVTILDGLGRVVQIIPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0184626_101705761	3300018053	Groundwater Sediment	MNPAGLRLAADEEGAAPVTILDGLGRVVRIIPADEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGSIENAVPR
Ga0184623_102512802	3300018056	Groundwater Sediment	MNPADLRLASDEDGAAPVTILDGLGRVVQIIPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0184640_100595683	3300018074	Groundwater Sediment	MNPAGLRLAADEDGAAPVTILDGLGRVVQIIPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0184632_100277464	3300018075	Groundwater Sediment	MNPADLRLASDEDGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0184632_101943451	3300018075	Groundwater Sediment	MNPADLRLAADEQGAAPVTILDGLGRVVRIVPAEEFRRTHGVPERPTRDHWRRRKERVKPTEIEQGAIENVVQR
Ga0184609_102204051	3300018076	Groundwater Sediment	MNPADLRLAADEQGAAPVTILDGLGRVVRIVPAEEFRRTHGVPERPTRDHWRRRKERVKPSEIEQGAIENVVQR
Ga0184609_102771302	3300018076	Groundwater Sediment	MYPAGLRLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTRDNWRRRRERVKPSEIEQDAIENVVSR
Ga0184612_103375881	3300018078	Groundwater Sediment	MNPAGLRLAADEEGAAPVTILDGLGRVVRIIPADEFRRIHGVPERPTTDNWRRRRERVKPSEIEQG
Ga0184627_100190025	3300018079	Groundwater Sediment	MNPAGLRLAADEEGAAAVTILDGLGRVVQIIPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0173479_104916571	3300019362	Soil	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALV
Ga0137408_12383014	3300019789	Vadose Zone Soil	MPVMDASKAQQHRKGETSMNAADPRLVGDEEIAAPVTILDGLGRVIRIVPAEEFRRIHGVPERPTPDNWRRRRGRAKPSEVAEAATEHAVPR
Ga0210378_101785982	3300021073	Groundwater Sediment	MNPADLRLAADEQGAAPVTILDGLGRVVRIVPAEEFRRTHGVPERPTRDHWRRRKERVKPSEIEPGAIENVVQR
Ga0207660_106048302	3300025917	Corn Rhizosphere	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALVG
Ga0207681_104547872	3300025923	Switchgrass Rhizosphere	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIAAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHALVG
Ga0209235_11013391	3300026296	Grasslands Soil	MNPAGPSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR
Ga0209237_10284345	3300026297	Grasslands Soil	MNPAGLNLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR
Ga0209236_11436521	3300026298	Grasslands Soil	MNPAGPSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVP
Ga0209236_11457542	3300026298	Grasslands Soil	GLNLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR
Ga0209470_11848711	3300026324	Soil	MNSADLRLASDEEGAAPVTILDGLGRVVRTIPAEEFRRIHGVPGRPTTDIWRRRRERVKPSEIEQGAIENAVPR
Ga0257180_10254012	3300026354	Soil	MNPAGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPG
Ga0209899_11018021	3300027490	Groundwater Sand	MNPADLRLAADEEGAAPVSILDGLGRVVRIVPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIEDVVPR
Ga0209874_10409263	3300027577	Groundwater Sand	MNPAGLRLAANEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKQREIEQGAIENVVPR
Ga0209388_10712672	3300027655	Vadose Zone Soil	MNPAGLSLAADEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDHWRRRRERVKPSEIEQGAIENVVPR
Ga0209180_100378135	3300027846	Vadose Zone Soil	ASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPG
Ga0209814_100262403	3300027873	Populus Rhizosphere	MNPTGRRLVADEEAPAPVTILDGLGRVMQVIPAEEFRRIRGVPAPPTPDSWRRRKERVKTSEIEQGAAATLATR
Ga0209283_100233001	3300027875	Vadose Zone Soil	AGLSLASDEEGAAPVTILDGLGRVVRIIPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENVVPR
Ga0209382_107498702	3300027909	Populus Rhizosphere	MTAAGQKPISDEEDEAAPVTILDALGRVIQVLPVAEFRRIHGVPERPTADKWRRRRERAKPSEIEEGVTAHPVSR
Ga0209885_10446242	3300027950	Groundwater Sand	MNPAGLRLAANEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKPSEIEQGAIENAVPR
Ga0209889_10055115	3300027952	Groundwater Sand	MHPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIEDVVPR
Ga0209859_10282353	3300027954	Groundwater Sand	MHPAGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTADNWRRRRERVKQREIEQDAIENVVPR
Ga0209853_10956121	3300027961	Groundwater Sand	MNPADLRLAADEEGAAPVSILDGLGRVVRIIPAEEFRRIHGVPGRPTTDNWRRRRERVKPSEIEQGAIEDVV
Ga0307499_103422962	3300031184	Soil	MSSAGRRPIADEESVAPVTILDGLGRVIGVVPAEEFRRIHGAPERPKPDMWRRRRERAKPIENAEDAIEHALVG
Ga0307497_104397612	3300031226	Soil	MNSAGRRPVAEEESAAPVTILDGLGRVVRVIPAEEFRRIHEAPERPKPDMWRRRRERAKPSENSEDVIEHALVG
Ga0307469_108498652	3300031720	Hardwood Forest Soil	MSSAGRRPVVDEESVAPVTILDGMGRVIEVVPAEEFRRIHGVPERPKQDMWRRRRERPKQSENAEDAIEHALVG
Ga0307469_123703691	3300031720	Hardwood Forest Soil	MSPAGRRPVVEEESAAPVTILDGLGRVIRVVPAEEFRRIRGVPERPKPDMWRRRRERAKPSENAEDAIEHALVG
Ga0307469_124394982	3300031720	Hardwood Forest Soil	MNPTGLRLAADEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKPRELEQGAI
Ga0307468_1001264202	3300031740	Hardwood Forest Soil	MSSAGRRPVADEESVAPVTILDGLGRVIGIVPAEEFRRIHGVPERAKPDMWRRRRERPKPSENVEDAIEPALVG
Ga0307471_1012666592	3300032180	Hardwood Forest Soil	MNPASLRLADDEEGAAPVTILDGLGRVVRIVPAEEFRRIHGVPERPTTDNWRRRRERVKPRELEQGAIENVVPR
Ga0307472_1012350221	3300032205	Hardwood Forest Soil	MSSAGRRPVAEEESAAPVTILDGLGRVIQVVPAEEFRRVHGAPERPKPEMWRRRRERAKPSENAEDAIEHALVG
Ga0310810_109367722	3300033412	Soil	MNSAGRRPVAEEESAAPVTILDGLGRVIRVVPAEEFRRIHGAPERPKPDMWRRRRERAKPSENSEDAIEHDLVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067498

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences