Metagenome / Metatranscriptome Family F067977

Basic Information
Family ID	F067977
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	63 residues
Representative Sequence	CSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLRARNPFR
Number of Associated Samples	89
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	98.40 %
% of genes from short scaffolds (< 2000 bps)	84.80 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Most Common Taxonomy
Group	Unclassified (91.200 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.200 % of family members)
Environment Ontology (ENVO)	Unclassified (72.800 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.600 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 20.45% Coil/Unstructured: 67.05%
Feature Viewer

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Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF07690	MFS_1	2.40
PF02357	NusG	0.80
PF03354	TerL_ATPase	0.80
PF05119	Terminase_4	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.80
COG3747	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.80
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.80

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
All Organisms	root	All Organisms	8.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
cellular organisms	root	All Organisms → cellular organisms	8.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.00 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.40 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.80 %
Shinella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella	0.80 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Methylosinus sporium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → Methylosinus sporium	0.80 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.80 %
unclassified Shinella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.20 %
Shinella sp. DD12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	0.80 %
Methylosinus sporium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → Methylosinus sporium	0.80 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.80 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01A4KXO	Not Available	506	Open in IMG/M
3300000955\|JGI1027J12803_109199315	Not Available	1292	Open in IMG/M
3300002568\|C688J35102_117883977	Not Available	513	Open in IMG/M
3300005713\|Ga0066905_100315923	Not Available	1233	Open in IMG/M
3300006175\|Ga0070712_100967775	Not Available	736	Open in IMG/M
3300006881\|Ga0068865_101947170	Not Available	533	Open in IMG/M
3300006881\|Ga0068865_102208614	Not Available	501	Open in IMG/M
3300006953\|Ga0074063_13837756	Not Available	743	Open in IMG/M
3300009176\|Ga0105242_10573492	Not Available	1085	Open in IMG/M
3300009551\|Ga0105238_11929097	Not Available	624	Open in IMG/M
3300009553\|Ga0105249_12445277	Not Available	595	Open in IMG/M
3300010375\|Ga0105239_11743873	Not Available	721	Open in IMG/M
3300010376\|Ga0126381_102461442	Not Available	746	Open in IMG/M
3300010376\|Ga0126381_103637862	Not Available	604	Open in IMG/M
3300010376\|Ga0126381_105017803	Not Available	507	Open in IMG/M
3300010398\|Ga0126383_12868594	Not Available	563	Open in IMG/M
3300012212\|Ga0150985_117482274	Not Available	627	Open in IMG/M
3300012957\|Ga0164303_11424360	Not Available	519	Open in IMG/M
3300012961\|Ga0164302_11293199	Not Available	589	Open in IMG/M
3300014326\|Ga0157380_11385357	Not Available	753	Open in IMG/M
3300014969\|Ga0157376_12448120	Not Available	562	Open in IMG/M
3300015373\|Ga0132257_103385041	Not Available	580	Open in IMG/M
3300016270\|Ga0182036_10013306	Not Available	4468	Open in IMG/M
3300016270\|Ga0182036_10210608	Not Available	1431	Open in IMG/M
3300016270\|Ga0182036_10361773	Not Available	1121	Open in IMG/M
3300016294\|Ga0182041_10370216	Not Available	1210	Open in IMG/M
3300016319\|Ga0182033_10019318	Not Available	4104	Open in IMG/M
3300016319\|Ga0182033_10023263	Not Available	3825	Open in IMG/M
3300016319\|Ga0182033_12038946	Not Available	523	Open in IMG/M
3300016341\|Ga0182035_10372640	Not Available	1192	Open in IMG/M
3300016341\|Ga0182035_11859232	Not Available	546	Open in IMG/M
3300016357\|Ga0182032_10422408	Not Available	1083	Open in IMG/M
3300016357\|Ga0182032_10946090	Not Available	734	Open in IMG/M
3300016371\|Ga0182034_10007663	All Organisms → cellular organisms → Bacteria → Proteobacteria	5887	Open in IMG/M
3300016371\|Ga0182034_11082163	Not Available	695	Open in IMG/M
3300016387\|Ga0182040_11428812	Not Available	586	Open in IMG/M
3300017792\|Ga0163161_10370940	Not Available	1142	Open in IMG/M
3300025899\|Ga0207642_10141312	All Organisms → cellular organisms → Bacteria → Acidobacteria	1270	Open in IMG/M
3300025916\|Ga0207663_10349841	Not Available	1118	Open in IMG/M
3300026118\|Ga0207675_101188826	Not Available	783	Open in IMG/M
3300026118\|Ga0207675_102123514	Not Available	578	Open in IMG/M
3300028754\|Ga0307297_10309387	Not Available	572	Open in IMG/M
3300028755\|Ga0307316_10194728	Not Available	730	Open in IMG/M
3300028819\|Ga0307296_10231157	Not Available	1005	Open in IMG/M
3300031170\|Ga0307498_10215685	Not Available	678	Open in IMG/M
3300031543\|Ga0318516_10471191	Not Available	722	Open in IMG/M
3300031543\|Ga0318516_10729987	Not Available	561	Open in IMG/M
3300031543\|Ga0318516_10793160	Not Available	535	Open in IMG/M
3300031544\|Ga0318534_10135653	Not Available	1417	Open in IMG/M
3300031545\|Ga0318541_10202610	Not Available	1098	Open in IMG/M
3300031564\|Ga0318573_10378245	Not Available	761	Open in IMG/M
3300031564\|Ga0318573_10579245	Not Available	604	Open in IMG/M
3300031573\|Ga0310915_10598729	Not Available	781	Open in IMG/M
3300031640\|Ga0318555_10526677	Not Available	640	Open in IMG/M
3300031668\|Ga0318542_10702413	Not Available	529	Open in IMG/M
3300031679\|Ga0318561_10004768	All Organisms → cellular organisms → Bacteria → Proteobacteria	5425	Open in IMG/M
3300031680\|Ga0318574_10569678	Not Available	664	Open in IMG/M
3300031682\|Ga0318560_10051940	Not Available	2022	Open in IMG/M
3300031713\|Ga0318496_10615428	Not Available	600	Open in IMG/M
3300031719\|Ga0306917_10021621	Not Available	3979	Open in IMG/M
3300031719\|Ga0306917_10581956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Shinella → unclassified Shinella → Shinella sp. DD12	880	Open in IMG/M
3300031720\|Ga0307469_11763979	Not Available	598	Open in IMG/M
3300031724\|Ga0318500_10005804	Not Available	3979	Open in IMG/M
3300031724\|Ga0318500_10664954	Not Available	530	Open in IMG/M
3300031744\|Ga0306918_10008337	All Organisms → cellular organisms → Bacteria → Proteobacteria	5739	Open in IMG/M
3300031744\|Ga0306918_10554893	Not Available	900	Open in IMG/M
3300031748\|Ga0318492_10046440	Not Available	2013	Open in IMG/M
3300031748\|Ga0318492_10412474	Not Available	711	Open in IMG/M
3300031764\|Ga0318535_10261830	Not Available	774	Open in IMG/M
3300031764\|Ga0318535_10544396	Not Available	515	Open in IMG/M
3300031769\|Ga0318526_10433087	Not Available	537	Open in IMG/M
3300031770\|Ga0318521_10051490	Not Available	2126	Open in IMG/M
3300031770\|Ga0318521_10221607	Not Available	1098	Open in IMG/M
3300031777\|Ga0318543_10337127	Not Available	675	Open in IMG/M
3300031777\|Ga0318543_10421241	Not Available	598	Open in IMG/M
3300031779\|Ga0318566_10283127	Not Available	821	Open in IMG/M
3300031782\|Ga0318552_10487435	Not Available	629	Open in IMG/M
3300031793\|Ga0318548_10191404	Not Available	1003	Open in IMG/M
3300031797\|Ga0318550_10236149	Not Available	886	Open in IMG/M
3300031798\|Ga0318523_10351402	Not Available	734	Open in IMG/M
3300031805\|Ga0318497_10470254	Not Available	704	Open in IMG/M
3300031805\|Ga0318497_10886649	Not Available	501	Open in IMG/M
3300031858\|Ga0310892_10754105	Not Available	672	Open in IMG/M
3300031859\|Ga0318527_10332458	Not Available	647	Open in IMG/M
3300031879\|Ga0306919_10986606	Not Available	644	Open in IMG/M
3300031890\|Ga0306925_10537698	Not Available	1240	Open in IMG/M
3300031894\|Ga0318522_10146247	Not Available	889	Open in IMG/M
3300031897\|Ga0318520_10004857	All Organisms → cellular organisms → Bacteria → Proteobacteria	5292	Open in IMG/M
3300031910\|Ga0306923_10034555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5480	Open in IMG/M
3300031910\|Ga0306923_10875001	Not Available	986	Open in IMG/M
3300031912\|Ga0306921_10243145	Not Available	2109	Open in IMG/M
3300031912\|Ga0306921_11118530	Not Available	882	Open in IMG/M
3300031912\|Ga0306921_11242607	Not Available	827	Open in IMG/M
3300031912\|Ga0306921_11522338	Not Available	730	Open in IMG/M
3300031942\|Ga0310916_10031127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3918	Open in IMG/M
3300031942\|Ga0310916_11463662	Not Available	558	Open in IMG/M
3300031947\|Ga0310909_10396244	Not Available	1159	Open in IMG/M
3300031954\|Ga0306926_10425601	Not Available	1637	Open in IMG/M
3300031954\|Ga0306926_10841994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1103	Open in IMG/M
3300031954\|Ga0306926_10975333	Not Available	1010	Open in IMG/M
3300031954\|Ga0306926_12271600	Not Available	602	Open in IMG/M
3300032009\|Ga0318563_10532847	Not Available	634	Open in IMG/M
3300032010\|Ga0318569_10252285	Not Available	820	Open in IMG/M
3300032025\|Ga0318507_10369032	Not Available	625	Open in IMG/M
3300032039\|Ga0318559_10378810	Not Available	659	Open in IMG/M
3300032041\|Ga0318549_10464420	Not Available	570	Open in IMG/M
3300032044\|Ga0318558_10140029	Not Available	1159	Open in IMG/M
3300032051\|Ga0318532_10009327	Not Available	2970	Open in IMG/M
3300032054\|Ga0318570_10034934	Not Available	2018	Open in IMG/M
3300032059\|Ga0318533_10657310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → Methylosinus sporium	769	Open in IMG/M
3300032064\|Ga0318510_10394209	Not Available	589	Open in IMG/M
3300032066\|Ga0318514_10495106	Not Available	650	Open in IMG/M
3300032076\|Ga0306924_10844427	Not Available	1017	Open in IMG/M
3300032076\|Ga0306924_10897036	Not Available	981	Open in IMG/M
3300032076\|Ga0306924_11038446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	897	Open in IMG/M
3300032076\|Ga0306924_11552487	Not Available	700	Open in IMG/M
3300032090\|Ga0318518_10010380	Not Available	3826	Open in IMG/M
3300032094\|Ga0318540_10230446	Not Available	894	Open in IMG/M
3300032261\|Ga0306920_100977970	Not Available	1233	Open in IMG/M
3300032261\|Ga0306920_102176204	Not Available	772	Open in IMG/M
3300032261\|Ga0306920_103484037	Not Available	582	Open in IMG/M
3300033289\|Ga0310914_11562210	Not Available	563	Open in IMG/M
3300033290\|Ga0318519_10462425	Not Available	761	Open in IMG/M
3300033290\|Ga0318519_10926317	Not Available	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.80%
Host-Associated	Host-Associated	11.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.80%
Plants	Host-Associated → Plants	11.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.80%
Loam	Environmental → Terrestrial → Soil → Loam	3.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.60%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_08564490	2170459005	Grass Soil	GSFHDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLSQLQERNPFQ
JGI1027J12803_1091993154	3300000955	Soil	FHDRTRARTDSHLINWGRYGLGIYDTMTEMTWHRRERAPSARFEFLGRLQQRNPFQ*
C688J35102_1178839772	3300002568	Soil	SGTFHDLTRVRTDSHLIGWSRFGLSIYDTMTETTWHRREQAQSSSLFEFVGRLREGGSRNGR*
Ga0066905_1003159232	3300005713	Tropical Forest Soil	FLRKRHARGGAATLRCSGRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR*
Ga0070712_1009677751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LMRARKALAGAPATLRCSGSFLDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG*
Ga0068865_1019471701	3300006881	Miscanthus Rhizosphere	PATLRCSGSFHDSTRVRTDSHLINWGRYGLGIWDSMTETTWHRRERAPSARFEFLGQLQARNPFR*
Ga0068865_1022086142	3300006881	Miscanthus Rhizosphere	PATLRCSGSFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDV*
Ga0074063_138377561	3300006953	Soil	RCSGSFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSAQLFEFLGQLREGGLRDG*
Ga0105242_105734921	3300009176	Miscanthus Rhizosphere	SFHDPTRARTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG*
Ga0105238_119290971	3300009551	Corn Rhizosphere	TFHDPTRVRTDSHLINWGRHGLGIWDSMTGQTWHRREKAPSALFTFLWQLRQKDPFA*
Ga0105249_124452771	3300009553	Switchgrass Rhizosphere	ARKAHANAPATLRCSGSFHDSTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR*
Ga0126382_106073381	3300010047	Tropical Forest Soil	TRVRTDSHLINWGHYGLGIWDAMTDTTWHRRERAPSARFEFLGQLQARNPFHE*
Ga0105239_117438732	3300010375	Corn Rhizosphere	YDRTRVRTDSHLLNWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR*
Ga0126381_1024614422	3300010376	Tropical Forest Soil	RKRTQGDIRCSGSSHDSTRTRTDSHLVNWGRHGLGIWDAMTDTTWHRRERAPSARFEFLRQLQAENPFNV*
Ga0126381_1036378622	3300010376	Tropical Forest Soil	LVRGRRSGAVTMRCSGTFHDPTRVRTDSHLINWGHHGLGIWDAMTDTTWHRRERAPSATFAFLEQLKRRNPLK*
Ga0126381_1050178032	3300010376	Tropical Forest Soil	RRDGAATMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK*
Ga0126383_128685941	3300010398	Tropical Forest Soil	GTFHDPTRVRTDSHLINWGRYGLGIYDTMTEMTWHRREKASTASLFEFLVNLREGRLHNG
Ga0150985_1174822742	3300012212	Avena Fatua Rhizosphere	CSGTFHDPTRVRTDSHLINWGRYGLGIWDSMTGQTWHRREKAPSGLCKFLGQLRQKDPFA
Ga0164303_114243601	3300012957	Soil	TLRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG*
Ga0164302_112931992	3300012961	Soil	FHDPTRVRTDSHLINWGRYGLGIHDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG*
Ga0157380_113853571	3300014326	Switchgrass Rhizosphere	GARANAPTTLRCSGSFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWDASAQVFEFLGRLRDGGRRDG*
Ga0157376_124481201	3300014969	Miscanthus Rhizosphere	TRVRTDSHLINWGRYGLGIHDTMTETTWHRRERGASARLFEFLGQLREG*
Ga0132257_1033850411	3300015373	Arabidopsis Rhizosphere	ECARTNAPSTLRCSGTFHDPTRKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGRLQARNPFHERA*
Ga0182036_100133061	3300016270	Soil	RTRVRTDSHLINWDRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0182036_102106081	3300016270	Soil	TVRCSGSFHDRTQKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFHE
Ga0182036_103617732	3300016270	Soil	TVRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0182041_103702161	3300016294	Soil	AGAPATLRCSGTFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREKASTASLFEFLVNLREGRLHNA
Ga0182033_100193185	3300016319	Soil	SGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0182033_100232631	3300016319	Soil	SGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0182033_120389462	3300016319	Soil	APATLRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFP
Ga0182035_103726401	3300016341	Soil	SFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0182035_118592321	3300016341	Soil	SALRCSGRFHDRTRARTDSHLIGWGRYGISIYDTMTETTWHRRERAPTARFEFLGQLQARNPFR
Ga0182032_104224082	3300016357	Soil	SALRCSGSFHDRTRARTDSHLIGWGRYGLSIYDTMTESSWHRRERAPSARFEFLGQLLARNPFDE
Ga0182032_109460902	3300016357	Soil	RTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFTFLEQLKGRNPLK
Ga0182034_100076631	3300016371	Soil	NGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0182034_110821631	3300016371	Soil	TRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0182040_114288121	3300016387	Soil	LVRKQRPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0163161_103709402	3300017792	Switchgrass Rhizosphere	MRARGARANAPAMLRCSGSFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG
Ga0207642_101413121	3300025899	Miscanthus Rhizosphere	RFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFQ
Ga0207663_103498411	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	HDSTRVRTDSHLINWGRYGLGIYDTMEETTWHRRERGPSARFEYLGQLQARNPFR
Ga0207675_1011888262	3300026118	Switchgrass Rhizosphere	ATLRCSGSFHDSTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERASSARFEFLGQLQERNPFK
Ga0207675_1021235141	3300026118	Switchgrass Rhizosphere	ARGAPANARATLRCSGSFHDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQGRNPFHE
Ga0307297_103093872	3300028754	Soil	ASTMRCSGRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSALFEFLGQLREGGGRDG
Ga0307316_101947282	3300028755	Soil	GRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR
Ga0307296_102311571	3300028819	Soil	GRHANAPATLRCSGRFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSALFEFLGQLREGGGRDG
Ga0307498_102156852	3300031170	Soil	CSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR
Ga0318516_104711911	3300031543	Soil	RRRRASDSAPATLRCSGTFHDPTRVRTDSHLINWGRFGLGIYDTMTETTWHRRERASVAQTFEFLEQLRRRKPR
Ga0318516_107299871	3300031543	Soil	VRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSARFEFLGQMLARSPFR
Ga0318516_107931602	3300031543	Soil	RCSGTFHDGTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSARFEFLTQILARSSC
Ga0318534_101356532	3300031544	Soil	HMRERRNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318541_102026102	3300031545	Soil	FHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0318573_103782452	3300031564	Soil	RCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPL
Ga0318573_105792452	3300031564	Soil	GTATVRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0310915_105987291	3300031573	Soil	RQAREASTVRCSGSFHDRTRKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFHE
Ga0318555_105266771	3300031640	Soil	VRKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDTMTETTWHRRERAPSATFAFLEQLRGRNPFK
Ga0318542_107024131	3300031668	Soil	FHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318561_100047681	3300031679	Soil	RCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPL
Ga0318574_105696781	3300031680	Soil	TLRCSGAFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREQASSASLFEFLVNLREGSLHDA
Ga0318560_100519401	3300031682	Soil	RERRNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0318496_106154281	3300031713	Soil	APATLRCSGTFHDPTRVRTDSHLINWGRFGLGIYDTMTETTWHRRERASVAQTFEFLEQLRRRKPR
Ga0306917_100216211	3300031719	Soil	GTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0306917_105819562	3300031719	Soil	RTGVGTPRCSGTFHDPTRVRTDSHLINWGRFGLGIYDTMTETTWHRRSRAPTARFEFLGQLQARNPF
Ga0307469_117639792	3300031720	Hardwood Forest Soil	FIRKRRLQGRLATLRCSGRFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSARLEFLGQLQARNPFR
Ga0318500_100058041	3300031724	Soil	CKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDAMTETTWHRRERMPSARFEFLGQLMERSPF
Ga0318500_106649542	3300031724	Soil	FHDPTRVRTDSHLINWGRHGLGIWDSMTATTWHRRERAPSERFEFLSQLQARNPFDGYQL
Ga0306918_100083371	3300031744	Soil	NGTTTMRCSGSFHDRTRVLTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0306918_105548932	3300031744	Soil	QRAQGGATTLRCSGSFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSALFEFLGQLQARNPFHV
Ga0318492_100464402	3300031748	Soil	RERRNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318492_104124742	3300031748	Soil	CSGSFHDSTRVRTDSHLINWGRRYGLGIWDAMTETTWHRRERAPSARFEFLGQLQARNPF
Ga0318535_102618301	3300031764	Soil	FIRRQRAQGGATTLRCSGSFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSALFEFLGQLQARNPFHV
Ga0318535_105443962	3300031764	Soil	RTRVRTDSHLINWGRHGLGIYDTMTETNWHRRERAPSTRFEFLSQLLARNPFK
Ga0318526_104330871	3300031769	Soil	SGSFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0318521_100514901	3300031770	Soil	RHNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318521_102216072	3300031770	Soil	LCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPL
Ga0318543_103371272	3300031777	Soil	LVRKQHPRDLRCSGTFRDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0318543_104212412	3300031777	Soil	SGSFHDRTRVRTDSRLINWGRYGLGIYDTMTETTWHRRTRAPSTTFEFLEQLKGRNPLK
Ga0318566_102831272	3300031779	Soil	MRCSGSFHDSTRVRTDSHLINWGRRYGLGIWDAMTETTWHRRERAPSARFEFLGRLQARNPFL
Ga0318552_104874351	3300031782	Soil	SGTFHDSTRVRTDSHLINWGRHGLGIYDTMTKTTWHRRERAPSSTFEFLEQLRERSPFK
Ga0318548_101914041	3300031793	Soil	RDGTATVRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318550_102361491	3300031797	Soil	GTFHDRTRARTDSHLVNWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLRARNPFR
Ga0318523_103514022	3300031798	Soil	ASTVRCSGSFHDRTRKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFHE
Ga0318497_104702542	3300031805	Soil	GTFHDPTRVRTDSHLINWGRHGLGIWDAMTGTTWHRRERAPSARFEFLGRLMEMNPFNM
Ga0318497_108866491	3300031805	Soil	DPTRVRTDSHLINWGRRGLGIWDSMTETTWHRRERAPSATFTFLEQLKKRSPFK
Ga0310892_107541052	3300031858	Soil	GARANAPTTLRCSGSFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREWGPSARLFEFLGQLREGGLRDG
Ga0318527_103324581	3300031859	Soil	RCSGTFHDPTRVRTDSHLINWGRRGLGIWDAMTETTWHRRERVPSARFEFLAQLMERSPF
Ga0306919_109866061	3300031879	Soil	TLRCSGTFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREKASTASLFEFLVNLREGRLCNG
Ga0306925_105376981	3300031890	Soil	GSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0318522_101462471	3300031894	Soil	RCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPF
Ga0318520_100048579	3300031897	Soil	TMRSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0306923_100345551	3300031910	Soil	SGSFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSELFTFLEQLRERNPFNERTVCLQDEP
Ga0306923_108750011	3300031910	Soil	GTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFTFLEQLKGRNPLK
Ga0306921_102431452	3300031912	Soil	CSGSFHDRTRARTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0306921_111185301	3300031912	Soil	TRARTDSHLIGWGRYGLSIYDTMTESSWHRRERAPSARFEFLGQLLARNPFDE
Ga0306921_112426072	3300031912	Soil	SFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSARFEFLGQMLARSPFR
Ga0306921_115223381	3300031912	Soil	REASTVRCSGSFHDRTRKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFHE
Ga0310916_100311271	3300031942	Soil	KQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0310916_114636622	3300031942	Soil	TSALRCSGSFHDRTRARTDSHLIGWGRYGLSIYDTMTESSWHRRERAPSARFEFLGQLLARNPFDE
Ga0310909_103962442	3300031947	Soil	HFLRKRHARGGAATLRCSGRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLRARNPFR
Ga0306926_104256012	3300031954	Soil	RTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0306926_108419941	3300031954	Soil	RCSGTFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSARFEFLTQILARSSC
Ga0306926_109753332	3300031954	Soil	SFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSALFEFLGQLQARNPFHV
Ga0306926_122716001	3300031954	Soil	HDSTRVRTDSHLISWGRHGLGIYDTMTETTWHRRERAPSARFEFLEQMLARSPRK
Ga0318563_105328472	3300032009	Soil	CLVRTQRAPATLRCSGTFHDGTRVRTDSHLINWGRHGLGIYDTMTETTWHRRERAPSARFEFLTEILARSSCT
Ga0318569_102522852	3300032010	Soil	TVRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFP
Ga0318507_103690322	3300032025	Soil	HNGTTTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318559_103788101	3300032039	Soil	ELERFVRKQHPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0318549_104644201	3300032041	Soil	CSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLRARNPFR
Ga0318558_101400292	3300032044	Soil	LRCSGTFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERNPFK
Ga0318532_100093271	3300032051	Soil	SGTFHDPTRVRTDSHLINWGRHGLGIWDAMTETTWHRRERMPSARFEFLGQLMERSPF
Ga0318570_100349342	3300032054	Soil	HDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318533_106573102	3300032059	Soil	SGSFHDRTRKRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFHE
Ga0318510_103942091	3300032064	Soil	GTATVRCSGSFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0318514_104951062	3300032066	Soil	SGTFHDPTRVRTDSHLINWGRRGLGIWDSMTETTWHRRERAPSATFTFLEQLKKRSPFK
Ga0306924_108444271	3300032076	Soil	TMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0306924_108970361	3300032076	Soil	RTRQGASALRCSGSFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSALFEFLGQLQARNPFHV
Ga0306924_110384462	3300032076	Soil	RGANTPVTLRCSGAFHDPTRVRTDSHLINWGRYGLGIYDTMTETTWHRREQASSASLFEFLVNLREGSLHDA
Ga0306924_115524871	3300032076	Soil	RTQRAQAAARPPLRCSGTFHDSTRVRTDSHLISWGRHGLGIYDTMTETTWHRRERAPSARFEFLEQMLARSPRK
Ga0318518_100103804	3300032090	Soil	TTMRCSGSFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRTRAPSATFAFLEQLKGRNPLK
Ga0318540_102304461	3300032094	Soil	SGSFHDRTRVRTDSHLINWGRRGLGIYDTMTETTWHRRERAPSARFEFLGQMLARSPFR
Ga0306920_1009779701	3300032261	Soil	HDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRARAPSATFAFLEQLKGRNPLK
Ga0306920_1021762041	3300032261	Soil	SFHDRTRVRTDSHLIGRGRYGISIYDTMTESTWHRRERAPSARFEFLGQLLARNPFDE
Ga0306920_1034840372	3300032261	Soil	CSGSFHDPTRVRTDSHLINWGRHGLGIWDSMTETTWHRRERAPSATFAFLEQLRERSPFK
Ga0310914_115622102	3300033289	Soil	SFHDRTRVRTDSHLINWGRHGLGIYDTMTETTWHRRARTPSATFAFLEQLKGRNPLK
Ga0318519_104624251	3300033290	Soil	LTAVTLRCSGTFHDRTRVRTDSHLINWGRYGIGIYDTMTEVTWHRRERGPSPRIEFLSQLQTRKPFR
Ga0318519_109263172	3300033290	Soil	ELERFVRKQRPRDLRCSGTFHDPTRVRTDSHLINWGRHGLGIWDTMTETTWHRRERAPSATFAFLEQLRGRNPFK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067977

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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