NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F068045

Metagenome / Metatranscriptome Family F068045

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F068045
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 80 residues
Representative Sequence MEWNLVRRRRDTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA
Number of Associated Samples 107
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 74.26 %
% of genes near scaffold ends (potentially truncated) 31.20 %
% of genes from short scaffolds (< 2000 bps) 63.20 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (55.200 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(22.400 % of family members)
Environment Ontology (ENVO) Unclassified
(36.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.600 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.21%    β-sheet: 17.48%    Coil/Unstructured: 56.31%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF13360PQQ_2 12.80
PF03640Lipoprotein_15 12.00
PF00127Copper-bind 12.00
PF00005ABC_tran 6.40
PF03992ABM 4.80
PF03734YkuD 2.40
PF00704Glyco_hydro_18 1.60
PF12695Abhydrolase_5 1.60
PF01694Rhomboid 1.60
PF00072Response_reg 0.80
PF13191AAA_16 0.80
PF00027cNMP_binding 0.80
PF01011PQQ 0.80
PF13570PQQ_3 0.80
PF00196GerE 0.80
PF13462Thioredoxin_4 0.80
PF01471PG_binding_1 0.80
PF05977MFS_3 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG4315Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)Function unknown [S] 12.00
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 2.40
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 2.40
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 1.60
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 0.80

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.20 %
UnclassifiedrootN/A44.80 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0739550Not Available852Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c0748146Not Available699Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c2058107Not Available540Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100637720Not Available766Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100638823Not Available591Open in IMG/M
3300000881|JGI10215J12807_1034462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis3978Open in IMG/M
3300002568|C688J35102_120548765All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1168Open in IMG/M
3300003321|soilH1_10277270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1212Open in IMG/M
3300003659|JGI25404J52841_10075110All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300004081|Ga0063454_100015612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2235Open in IMG/M
3300004153|Ga0063455_100014639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1944Open in IMG/M
3300004463|Ga0063356_101077211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1156Open in IMG/M
3300004479|Ga0062595_101374232Not Available641Open in IMG/M
3300005093|Ga0062594_100142250All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1550Open in IMG/M
3300005294|Ga0065705_10007801All Organisms → cellular organisms → Bacteria3460Open in IMG/M
3300005294|Ga0065705_10782564Not Available617Open in IMG/M
3300005333|Ga0070677_10117729Not Available1195Open in IMG/M
3300005336|Ga0070680_100124126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2157Open in IMG/M
3300005355|Ga0070671_100322701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1316Open in IMG/M
3300005365|Ga0070688_100128071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1709Open in IMG/M
3300005440|Ga0070705_101352780Not Available592Open in IMG/M
3300005444|Ga0070694_101653344All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300005467|Ga0070706_100140726All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2253Open in IMG/M
3300005526|Ga0073909_10167529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium928Open in IMG/M
3300005617|Ga0068859_101485744Not Available748Open in IMG/M
3300005718|Ga0068866_11025993All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300005983|Ga0081540_1014213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5116Open in IMG/M
3300005983|Ga0081540_1024042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3545Open in IMG/M
3300006058|Ga0075432_10131119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium949Open in IMG/M
3300006173|Ga0070716_100872335Not Available702Open in IMG/M
3300006178|Ga0075367_10333361Not Available957Open in IMG/M
3300006845|Ga0075421_100353555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1774Open in IMG/M
3300006845|Ga0075421_101895731Not Available638Open in IMG/M
3300006880|Ga0075429_101673314Not Available553Open in IMG/M
3300006904|Ga0075424_102486614Not Available542Open in IMG/M
3300009098|Ga0105245_10082712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2937Open in IMG/M
3300009100|Ga0075418_11877049Not Available652Open in IMG/M
3300009162|Ga0075423_12664859Not Available547Open in IMG/M
3300009553|Ga0105249_11432909All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria763Open in IMG/M
3300010147|Ga0126319_1085934All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14566Open in IMG/M
3300010147|Ga0126319_1144816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium979Open in IMG/M
3300010154|Ga0127503_10474529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium699Open in IMG/M
3300010154|Ga0127503_11119089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium896Open in IMG/M
3300012200|Ga0137382_10638434All Organisms → cellular organisms → Bacteria → Terrabacteria group761Open in IMG/M
3300012208|Ga0137376_11527537Not Available559Open in IMG/M
3300012211|Ga0137377_11477352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium606Open in IMG/M
3300012212|Ga0150985_101625692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium961Open in IMG/M
3300012212|Ga0150985_102622991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2218Open in IMG/M
3300012212|Ga0150985_106990910All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium823Open in IMG/M
3300012212|Ga0150985_110036666All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14771Open in IMG/M
3300012212|Ga0150985_113693830All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium562Open in IMG/M
3300012212|Ga0150985_120895221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium527Open in IMG/M
3300012212|Ga0150985_121084303Not Available607Open in IMG/M
3300012469|Ga0150984_106705775All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium818Open in IMG/M
3300012896|Ga0157303_10125675Not Available657Open in IMG/M
3300012901|Ga0157288_10059935Not Available918Open in IMG/M
3300012904|Ga0157282_10026300All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1254Open in IMG/M
3300012910|Ga0157308_10003442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3004Open in IMG/M
3300012937|Ga0162653_100038335All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium714Open in IMG/M
3300012951|Ga0164300_10994237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14539Open in IMG/M
3300012955|Ga0164298_10029112All Organisms → cellular organisms → Bacteria2462Open in IMG/M
3300012961|Ga0164302_10738487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium734Open in IMG/M
3300012987|Ga0164307_10513405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria908Open in IMG/M
3300012989|Ga0164305_10505652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium952Open in IMG/M
3300012989|Ga0164305_11825106Not Available550Open in IMG/M
3300013100|Ga0157373_11335042Not Available544Open in IMG/M
3300015201|Ga0173478_10009588All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2464Open in IMG/M
3300015371|Ga0132258_12566205All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1274Open in IMG/M
3300015374|Ga0132255_100056676All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5137Open in IMG/M
3300018028|Ga0184608_10398918Not Available598Open in IMG/M
3300018054|Ga0184621_10072789Not Available1184Open in IMG/M
3300019356|Ga0173481_10004262All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3740Open in IMG/M
3300019362|Ga0173479_10027671All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis1686Open in IMG/M
3300019869|Ga0193705_1005464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2778Open in IMG/M
3300019873|Ga0193700_1028027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium928Open in IMG/M
3300019886|Ga0193727_1007036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4503Open in IMG/M
3300020002|Ga0193730_1045848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1264Open in IMG/M
3300020005|Ga0193697_1030321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1350Open in IMG/M
3300020016|Ga0193696_1002923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4986Open in IMG/M
3300020080|Ga0206350_10180464Not Available572Open in IMG/M
3300020140|Ga0179590_1080861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14865Open in IMG/M
3300021363|Ga0193699_10472362Not Available514Open in IMG/M
3300022893|Ga0247787_1022195Not Available854Open in IMG/M
3300023266|Ga0247789_1017428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1183Open in IMG/M
3300024181|Ga0247693_1027455Not Available778Open in IMG/M
3300024347|Ga0179591_1110277All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3957Open in IMG/M
3300025885|Ga0207653_10005869All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3831Open in IMG/M
3300025899|Ga0207642_10009199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3427Open in IMG/M
3300025899|Ga0207642_10691786All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300025907|Ga0207645_10158219All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Marmoricola → unclassified Marmoricola → Marmoricola sp. URHB00361481Open in IMG/M
3300025913|Ga0207695_10588100Not Available994Open in IMG/M
3300026023|Ga0207677_10278384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1372Open in IMG/M
3300026075|Ga0207708_11196677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria664Open in IMG/M
3300027821|Ga0209811_10024787All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1979Open in IMG/M
3300027873|Ga0209814_10171841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces mirabilis932Open in IMG/M
3300027907|Ga0207428_10002990All Organisms → cellular organisms → Bacteria16692Open in IMG/M
3300027993|Ga0247749_1028849Not Available623Open in IMG/M
3300028755|Ga0307316_10211659Not Available700Open in IMG/M
3300028793|Ga0307299_10008649All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3581Open in IMG/M
3300031720|Ga0307469_12082147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria552Open in IMG/M
3300031740|Ga0307468_100565634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria919Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil22.40%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.60%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere5.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.00%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil3.20%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.20%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.40%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere2.40%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.40%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.40%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.60%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.60%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.60%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.60%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.80%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.80%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.80%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.80%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.80%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.80%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003321Sugarcane bulk soil Sample H1EnvironmentalOpen in IMG/M
3300003659Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006178Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012937Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300019873Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020005Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2EnvironmentalOpen in IMG/M
3300020016Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300022893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300024181Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34EnvironmentalOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027993Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S199-509C-5EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_073955012228664021SoilMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACAHAILDRRARLEETVAA
ICChiseqgaiiDRAFT_074814623300000033SoilMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELEXPPRLLPGVCDACAXAXLDRRARLXETVAA*
ICChiseqgaiiDRAFT_205810723300000033SoilMEWKVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGICDDCADAIFDRRARSEDAVAA*
INPhiseqgaiiFebDRAFT_10063772013300000364SoilMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACAHAILDRRARLE
INPhiseqgaiiFebDRAFT_10063882313300000364SoilMEWKVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGICDDCADAIFDRRARSEEAVAA*
JGI10215J12807_103446243300000881SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDRRARLEETVAA*
C688J35102_12054876533300002568SoilMEWNRIRRRRNPDLVTCSLCLRVRRDSAWVEPESVITELRSYELDTAPTLLPAVCDACIDAIVGRRAQWEDTLAA*
soilH1_1027727023300003321Sugarcane Root And Bulk SoilMELKLVPQRRTKLVACSLCLRVRRGSAWVDAETAIRELRTYELPSLPRLEPAVCDDCLAAIVERRMQAEEAIAA*
JGI25404J52841_1007511013300003659Tabebuia Heterophylla RhizosphereMKWNLVRRARDTDLVTCSLCLRVRRGSAWIEAEAVITELRSYELDVPPRLLPGVCDDCADAILLRRARXAEAIAA*
Ga0063454_10001561243300004081SoilMEWRIGRRRNPNLVTCSLCLRVHRGSAWVEPESVITELRSYELDTAPTLLPGVCDACTDAILGRRAQPEETLAA*
Ga0063455_10001463913300004153SoilWNRIRRRRNPDLVTCSLCLRVRRDSAWVEPESVITELRSYELDTAPTLLPAVCDACIDAIVGRRAQWEDTLAA*
Ga0063356_10107721143300004463Arabidopsis Thaliana RhizosphereMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0062595_10034221823300004479SoilMAGGREGTSPPASDPRVHIVTGLKGLVMEWNLVQRRRETELVTCSLCLRVRRGSAWIEADAVIAQLRSYELDTPPRLLPGVCDDCADAIFDRRAQTEGAIAA*
Ga0062595_10137423223300004479SoilMEWNLRSRRRHADLAACSLCLRVHRGSAWVEAEDVIRELRSYELPAAPQLQPGICDSCADAILGRRARAAQTIAA*
Ga0062594_10014225033300005093SoilMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0065705_1000780133300005294Switchgrass RhizosphereMEWNVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGICDDCADAIFDRRARSEDVIAA*
Ga0065705_1078256413300005294Switchgrass RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPKLLPGVCDACADAILDRRARLEETVAA*
Ga0070677_1011772933300005333Miscanthus RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0070680_10012412623300005336Corn RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0070671_10032270113300005355Switchgrass RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFYRRARSEEVIAA*
Ga0070688_10012807133300005365Switchgrass RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAVCDDCADAIFDRRA
Ga0070705_10135278013300005440Corn, Switchgrass And Miscanthus RhizosphereMEWNLVRRSHDAELVACSLCLRVRRGSAWIEAEEVIRELRSYELPVAPRLQSGVCDDCADAIFDRRAHAEEEAIAA*
Ga0070694_10165334413300005444Corn, Switchgrass And Miscanthus RhizosphereMEWNVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPLRLLPGICDDCADAIFDRRARSEDVIAA*
Ga0070706_10014072633300005467Corn, Switchgrass And Miscanthus RhizosphereMEWNLVRRSHDAELVACSLCLRVRRGSTWIEAEEAIRQLRSYELPVAPRLQPGVCDDCADSIFDRRAHAEEEAIAA*
Ga0073909_1016752923300005526Surface SoilMEWKVLRRRSGTDLVTCSLCLRVRRGSAWVESEDVITELRSYELDAPPRLLPGVCDECADAIFDRRARTEEGIAA*
Ga0070697_10112725913300005536Corn, Switchgrass And Miscanthus RhizosphereRGPVSSRAARKPTTGQQVAAISGQQAPRMGAGREGMSARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0068859_10148574423300005617Switchgrass RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELERPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0068866_1102599313300005718Miscanthus RhizosphereMEWNVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGICDDCADTIFDRRARTEDAVAA*
Ga0068861_10054180913300005719Switchgrass RhizospherePITCQQVAAIWGQQAVRIAAGGEGADAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETAAA*
Ga0081540_101421343300005983Tabebuia Heterophylla RhizosphereMEWKVIRRRHDTALVTCSLCLRVRRGSEWVEPEDVITALRSYELDSPPRLLPGVCDDCADAIFDRRAQLEETVAA*
Ga0081540_102404253300005983Tabebuia Heterophylla RhizosphereMKWNLVRRARDTDLVTCSLCLRVRRGSAWIEAEAVITELHSYELDVPPRLLPGVCDDCADAILLRRARTAEAIAA*
Ga0075432_1013111913300006058Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILD
Ga0070716_10087233513300006173Corn, Switchgrass And Miscanthus RhizosphereWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0075367_1033336123300006178Populus EndosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELQTPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0075421_10035355533300006845Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILD
Ga0075421_10189573133300006845Populus RhizosphereMVWKVIRRRRKTDLVTCSLCLRVRRGSDWVEPEDVIAELRSFDLAAPPRLLPGVCDDCADAIF
Ga0075420_10095053913300006853Populus RhizosphereADTPRSDPCLHNVPTRKGPVMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0075429_10167331423300006880Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETAAA*
Ga0075424_10248661433300006904Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDR
Ga0075435_10028469313300007076Populus RhizosphereGADAPRSDPCLHNVPTRKGPVMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELQTPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0105250_1009105923300009092Switchgrass RhizosphereMGAGREGTSARSGDPHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0105245_1008271233300009098Miscanthus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETAAA*
Ga0075418_1187704923300009100Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACAD
Ga0105247_1064859613300009101Switchgrass RhizosphereAISGQQAPRMGAGREGTSARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0075423_1266485913300009162Populus RhizosphereVVGQAATACTDLVACSLYLRVRRGSAWVEPEDVITELRSFELETPPRLLPAVCDGCADAILDRRARLEETVAA*
Ga0105241_1055696813300009174Corn RhizosphereALRMGAGREGTSARSGDPHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0105242_1005935113300009176Miscanthus RhizosphereMSARGGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0105248_1079623633300009177Switchgrass RhizosphereMSARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0105237_1008955423300009545Corn RhizosphereMGAGREGTSARSGDPHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0105249_1143290913300009553Switchgrass RhizosphereDPRLHNVPTPKGPGMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0126319_108593413300010147SoilLRGVVMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYDLESPPNLLPGVCDDCADAIFDRRARSEETVAA*
Ga0126319_114481633300010147SoilLKGLAMEWNLRSLRPHTDLVTCSLCLRVQRGSDWVEAEDIIKELRSYELPTAPHLRPGMCDACADAVFGRRARAAETIAA*
Ga0127503_1047452923300010154SoilWNLRSRLRGTDLIACSLCLRVQRGSGWVEAEDVIRELRSYEFPAAPRLRPGMCDACADAILGRRARPVETIAA*
Ga0127503_1111908923300010154SoilWNLRSRRPRTDLVTRSLCLRVLHGSARVEAENVIKELRSYELSTVPHLRAGMCDACAEAIFSRRAQAVQTLAA*
Ga0134126_1017220423300010396Terrestrial SoilMGAGREGTSARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0137382_1063843423300012200Vadose Zone SoilMEWKVIRRRRSTDLVACSLCLRVRRDSAWVEPEDVITELRSYDLEDPPRLLPGVCDDCADAIFDRRAGIEEAIAA*
Ga0137376_1152753713300012208Vadose Zone SoilMEWNLKSRRRHTDLVACSLCLRVHRGSGWVEAEDVIRELLSYELPAVPRLQPGMCDDCADAIFGRRARVVETVAA*
Ga0137377_1147735223300012211Vadose Zone SoilMEWNLRSLRPHADLVTCSLCLRVQRGSAWVEAEHIIKELRSYELPTAPHLRPGMCDACADAIFGRRARAAETIAA*
Ga0150985_10162569213300012212Avena Fatua RhizosphereKGVVMEWKVIRRRSETGLVACSLCLRVRSGSAWLEPEDVITELRSYELESPPTLLPGVCDACADAIFDRRARREETVAA*
Ga0150985_10262299143300012212Avena Fatua RhizosphereVESHTTTANPDLVTCSLCLRVRRDSAWVEPESVITELRSYELDTAPTLLPAVCDACIDAIVGRRAQWEDTLAA*
Ga0150985_10699091013300012212Avena Fatua RhizosphereLRGTKGVAMEWRIGRRRNPNLVTCSLCLRVHRGSAWVEPESVITELRSYELDTAPTLLPGVCDACTDAILGRRAQPEETLAA*
Ga0150985_11003666613300012212Avena Fatua RhizosphereIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYDLESPPNLLPGVCDDCADAIFDRRARPEETVAA*
Ga0150985_11369383023300012212Avena Fatua RhizosphereRLKGLAMEWNLRSLRPHTDLVTCSLCLRVQRGSAWVEAEHVIEELRSYELPSAPHLRPGMCDACADAIFGRRARAAETIAA*
Ga0150985_12089522113300012212Avena Fatua RhizosphereMEWNLRSRLRHTDLLVCSLCLRVQRGSAWVEAEDVIRELRSYEFPAAPPLRPGMCDACADAIFGRRARPVETITA*
Ga0150985_12108430313300012212Avena Fatua RhizosphereDPRLHIVPAPKGVVMEWKVIRRRRSTDLVACSLCLRVRRGSAWVEPEDVITELRSYDLEAPPRLLPGVCDDCADAIFDRRAGIEEAIAA*
Ga0150984_10670577513300012469Avena Fatua RhizosphereGTKGVAMEWRIGRRRNPNLVTCSLCLRVHRGSAWVEPESVITELRSYELDTAPTLLPGVCDACTDAILGRRAQPEETLAA*
Ga0157309_1007546823300012895SoilDAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0157303_1012567513300012896SoilTPKGPVMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0157292_1003514433300012900SoilIAAGGEGADAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPEDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0157288_1005993513300012901SoilDAPRSDPRLHNVPTPKGPVMGWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPEDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0157282_1002630033300012904SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDR
Ga0157308_1000344223300012910SoilMGWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPEDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0162653_10003833523300012937SoilMAELVTCSLCLRVRRGSAWIEADAVIAQLRSYELDTPPRLLPGVCDDCADAIFDRRAQSEGAIAA*
Ga0164300_1099423713300012951SoilMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYDLESPPNLLPGICDDCADAIFDRRARPEETVAA*
Ga0164298_1002911233300012955SoilMEWRVIHRRKDTDLVTCSLCLRVRRGSAWVEADDVITELRSYELETPPNLLPGVCDDCADAIFDRRARLEETVAA*
Ga0164298_1038806413300012955SoilVSSRAARKSTTGQQVAAISGQQAPQMGAGREAMSARSGHPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0164302_1044345023300012961SoilGAGREGMRARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVHRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0164302_1073848723300012961SoilKGVVMEWKVLRRRSGTDLVTCSLCLRVRRGSAWVESEDVITELRSYELDAPPRLLPGVCDECADAIFDRRARTEEGIAA*
Ga0164304_1014755913300012986SoilMSARSGHPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0164307_1051340523300012987SoilMEWRVIHRRKDTDLVTCSLCLRVRRGSAWVEADDVITELRSYELETPPNLLPGVCNDCADAIFDRRARLEETVAA*
Ga0164305_1050565233300012989SoilMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYDLESPPNLLPGICDDCADAIFDRRARPE
Ga0164305_1182510623300012989SoilVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0157373_1133504213300013100Corn RhizospherePHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0157378_1002108033300013297Miscanthus RhizosphereMGAGREGTSARSGDPHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLGLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0163162_1160838013300013306Switchgrass RhizosphereITCQQVAAIWGQQADRIAAGGEGAAAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0157375_1000955133300013308Miscanthus RhizosphereMGAGREGTSARSGDPRLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0157379_1122879313300014968Switchgrass RhizosphereREGTSARSGDPHLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA*
Ga0173478_1000958813300015201SoilMEWNLVRRRRNTDLITCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA*
Ga0132258_1256620523300015371Arabidopsis RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITALRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0132255_10005667623300015374Arabidopsis RhizosphereMEWNLVRRRRDTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA*
Ga0184608_1039891823300018028Groundwater SedimentWKVIRRRSRTDLVTCSLCLRVRRGSAWVEPEFLITELRSYELDTPPRLLPGVCDDCADAIFDRRVRTEEVIAA
Ga0184621_1007278913300018054Groundwater SedimentMEWKVIRRRSRTDLVTCSLCLRVRRGSAWVEPEFLITELRSYELDTPPRLLPGVCDDCADAIFDRRVRTEEVIAA
Ga0184624_1004312923300018073Groundwater SedimentMAGGREGRSASASDPRVHIVTGLKGLVMEWNLVQRRRETELVTCSLCLRVRRGSAWIEADAVIAQLRSYGLDTPPRLLPGVCDDCADAIFDRRAQSEGAIAA
Ga0173481_1000426253300019356SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDRRARLEETVAA
Ga0173482_1053813113300019361SoilGQQAVRIAAGGEGADAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA
Ga0173479_1002767133300019362SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARLEETVAA
Ga0193705_100546443300019869SoilMEWKVIRRRSRTDLVTCSLCLRVRRGSAWVEPEALITELRSYELDTPPRLLPGVCDDCADAIFDRRVRTEEVIAA
Ga0193700_102802713300019873SoilMEWKVIRRRSRTDLVTCSLCLRVRRGSAWVEPEALITELRSYELDTPPRLLPGVCDDCAD
Ga0193727_100703643300019886SoilMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPGVCDDCADAIFDRRARPEETVAA
Ga0193730_104584823300020002SoilMEWKVIQRRRDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGVCDDCADAIFDRRAQLEETVAA
Ga0193697_103032113300020005SoilMEWNVIRRRRSTDLVTCSLCLRVRRGSDWVEPEDVIAELRSYELESPPRLWPGVCDDCADAIFDRRARLD
Ga0193696_100292343300020016SoilMEWNVIRRRRSTDLVTCSLCLRVRRGSDWVEPEDVIAELRSYELESPPRLWPGVCDDCADAIFDRRARLDEPVAA
Ga0206350_1018046413300020080Corn, Switchgrass And Miscanthus RhizosphereLHIVPAPKGVVMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA
Ga0179590_108086123300020140Vadose Zone SoilMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYDLDSPPNLLPGVCDDCADAIFDRRARPEETVAA
Ga0193699_1047236213300021363SoilMEWKVIRRRHDTNLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPGICDDCADAIFDRRARAEETVAA
Ga0247787_102219513300022893SoilPKGPVMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDRRARLEETVAA
Ga0247789_101742833300023266SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELENPPSLLPGVCDACADAILDRRARL
Ga0247693_102745513300024181SoilMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLMPAICDDCADAIFDRRARSEEVIAA
Ga0179591_111027743300024347Vadose Zone SoilMEWNLGSLRPHADLVTCSLCLRAQRGSAWVEAEHVIKELRSYELPTAPHLRPGMCDACADAIFGRRAQAAQTIAA
Ga0207653_1000586933300025885Corn, Switchgrass And Miscanthus RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPNLLPAICDDCADAIFDRRARSEEVIAA
Ga0207642_1000919923300025899Miscanthus RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELESPPNLLPAICDDCADAIFDRRARSEEVIAA
Ga0207642_1069178623300025899Miscanthus RhizosphereMEWNVIRRRRDTNLVTCSVCLRVRRGSAWIEPEDVITALRSYELESPPRLLPGICDDCADTIFDRRARTEDAVAA
Ga0207645_1015821913300025907Miscanthus RhizosphereMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPHLLPAICDDCADAIFDRRARSEEVIAA
Ga0207695_1058810023300025913Corn RhizosphereDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPKLLPAICDDCADAIFDRRARSEEVIAA
Ga0207687_1011112533300025927Miscanthus RhizosphereAAGGEGADAPRSDPRLHNVPTPKGPVMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA
Ga0207677_1027838423300026023Miscanthus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA
Ga0207708_1119667713300026075Corn, Switchgrass And Miscanthus RhizospherePMPRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETAAA
Ga0209811_1002478733300027821Surface SoilMEWKVIHRRGDTDLVTCSLCLRVRRGSAWIEPEDVITALRSYELDSPPKLLPAICDDCADAIFDRRARSEEVIAA
Ga0209814_1017184133300027873Populus RhizosphereTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA
Ga0207428_1000299013300027907Populus RhizosphereMEWNLVRRRRNTDLVTCSLCLRVRRGSAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETVAA
Ga0247749_102884913300027993SoilMEWNLVRRRRNTDLVTCSLCLSVRRGSAWVEPQDVITELRSYELETPPSLLPGVCDACADAILDRRARLEETV
Ga0307316_1021165923300028755SoilMEWKVIRRRSRTDLVTCSLCLRVRRRSAWVEPEALITELRSYELDTPPRLLPGVCDDCADAIFDRRVRTEEVIAA
Ga0307299_1000864953300028793SoilMEWKVTRRRSRTDLVTCSLCLRVRRGSAWVEPEALITELRSYELDTPPRLLPGVCDDCADAIFDRRVRTEEVIAA
Ga0307469_1208214713300031720Hardwood Forest SoilRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADASLDRRARLEETAAA
Ga0307468_10056563423300031740Hardwood Forest SoilMEWNLVRRRRNTDLVTCSLCLRVRRASAWVEPEDVITELRSYELETPPRLLPGVCDACADAILDRRARLEETAAA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.